Query 045559
Match_columns 335
No_of_seqs 118 out of 1263
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.1E-35 4.6E-40 254.1 25.6 218 93-327 1-230 (230)
2 PF08268 FBA_3: F-box associat 99.7 1.6E-15 3.4E-20 118.2 13.6 107 202-313 1-118 (129)
3 PF07734 FBA_1: F-box associat 99.6 9.7E-15 2.1E-19 118.6 14.7 127 202-334 1-148 (164)
4 PHA02713 hypothetical protein; 99.4 5.9E-12 1.3E-16 121.4 16.5 199 107-333 320-541 (557)
5 PHA02713 hypothetical protein; 99.3 1.3E-10 2.9E-15 112.1 18.9 196 108-333 273-497 (557)
6 KOG4441 Proteins containing BT 99.3 1.2E-10 2.6E-15 112.2 17.8 212 92-333 327-554 (571)
7 PHA02790 Kelch-like protein; P 99.3 3.2E-10 6.8E-15 107.8 18.3 187 107-334 287-479 (480)
8 PHA03098 kelch-like protein; P 99.3 2.7E-10 5.7E-15 110.2 18.2 197 107-333 311-519 (534)
9 KOG4441 Proteins containing BT 99.2 4.3E-10 9.4E-15 108.4 17.2 196 107-333 301-507 (571)
10 PLN02153 epithiospecifier prot 99.1 1E-08 2.2E-13 93.5 19.5 208 107-333 50-292 (341)
11 TIGR03548 mutarot_permut cycli 99.1 1.5E-08 3.3E-13 91.7 18.7 152 170-333 87-287 (323)
12 TIGR03547 muta_rot_YjhT mutatr 99.1 4.1E-08 8.8E-13 89.7 20.9 208 106-333 28-306 (346)
13 PLN02193 nitrile-specifier pro 99.0 2.5E-08 5.5E-13 94.6 19.7 205 107-333 193-418 (470)
14 PLN03215 ascorbic acid mannose 99.0 1.4E-07 3E-12 85.0 22.5 292 1-331 11-352 (373)
15 PHA03098 kelch-like protein; P 98.9 4.1E-08 9E-13 95.0 17.0 149 171-333 311-472 (534)
16 PRK14131 N-acetylneuraminic ac 98.9 1.4E-07 3E-12 87.2 18.1 221 94-333 35-328 (376)
17 PHA02790 Kelch-like protein; P 98.9 5.8E-08 1.3E-12 92.4 15.5 144 170-333 286-431 (480)
18 PLN02153 epithiospecifier prot 98.7 7.1E-07 1.5E-11 81.4 17.4 157 171-333 50-233 (341)
19 PLN02193 nitrile-specifier pro 98.7 1.3E-06 2.8E-11 83.1 17.3 155 171-333 193-359 (470)
20 PRK14131 N-acetylneuraminic ac 98.6 3.2E-06 6.8E-11 78.2 18.0 154 171-331 189-374 (376)
21 TIGR03548 mutarot_permut cycli 98.6 4.2E-06 9E-11 75.7 16.5 149 172-333 40-202 (323)
22 TIGR03547 muta_rot_YjhT mutatr 98.5 1.2E-05 2.6E-10 73.5 18.0 138 171-315 168-329 (346)
23 KOG1230 Protein containing rep 98.5 6.9E-06 1.5E-10 73.3 15.3 216 106-334 97-349 (521)
24 PF12937 F-box-like: F-box-lik 98.3 2.1E-07 4.6E-12 58.5 1.0 36 1-36 8-43 (47)
25 PF00646 F-box: F-box domain; 98.3 3.8E-07 8.2E-12 57.6 1.8 38 1-38 10-47 (48)
26 smart00256 FBOX A Receptor for 98.2 3.4E-07 7.4E-12 55.6 0.2 36 1-36 5-40 (41)
27 KOG4693 Uncharacterized conser 97.6 0.0016 3.6E-08 55.3 12.5 187 106-315 104-310 (392)
28 KOG0379 Kelch repeat-containin 97.0 0.081 1.8E-06 50.6 18.5 205 108-333 89-309 (482)
29 KOG4693 Uncharacterized conser 97.0 0.016 3.4E-07 49.5 11.6 224 95-335 32-286 (392)
30 KOG0379 Kelch repeat-containin 96.8 0.066 1.4E-06 51.2 15.5 154 172-333 89-257 (482)
31 smart00284 OLF Olfactomedin-li 96.6 0.075 1.6E-06 45.8 13.0 119 201-332 78-215 (255)
32 PF02191 OLF: Olfactomedin-lik 96.5 0.098 2.1E-06 45.3 13.4 121 201-334 73-212 (250)
33 KOG1230 Protein containing rep 96.0 0.53 1.1E-05 43.0 15.2 149 172-326 99-276 (521)
34 KOG2120 SCF ubiquitin ligase, 95.4 0.0038 8.1E-08 54.4 -0.1 35 1-35 105-139 (419)
35 PF13964 Kelch_6: Kelch motif 95.2 0.056 1.2E-06 33.9 4.7 41 201-243 6-47 (50)
36 KOG0281 Beta-TrCP (transducin 94.4 0.015 3.3E-07 51.2 0.9 40 1-40 86-125 (499)
37 PF01344 Kelch_1: Kelch motif; 94.3 0.14 3E-06 31.4 5.0 41 201-243 6-47 (47)
38 PF02897 Peptidase_S9_N: Proly 94.3 4.7 0.0001 37.7 19.3 120 202-333 283-412 (414)
39 PF07893 DUF1668: Protein of u 94.1 1.7 3.7E-05 39.6 13.6 145 106-269 85-252 (342)
40 PF07646 Kelch_2: Kelch motif; 93.9 0.18 3.9E-06 31.4 4.9 42 201-242 6-47 (49)
41 COG3055 Uncharacterized protei 93.2 1.2 2.5E-05 40.1 10.2 83 201-294 41-133 (381)
42 TIGR01640 F_box_assoc_1 F-box 93.1 2.9 6.3E-05 35.5 12.7 117 204-333 3-135 (230)
43 PF10282 Lactonase: Lactonase, 93.1 6.9 0.00015 35.7 19.4 150 170-333 165-332 (345)
44 COG4257 Vgb Streptogramin lyas 92.8 6.1 0.00013 34.5 13.7 215 95-334 70-314 (353)
45 PF13964 Kelch_6: Kelch motif 92.5 0.32 7E-06 30.4 4.5 29 305-333 9-44 (50)
46 PF08450 SGL: SMP-30/Gluconola 92.0 7.1 0.00015 33.4 19.9 203 97-334 11-222 (246)
47 PF06433 Me-amine-dh_H: Methyl 91.5 3.5 7.6E-05 37.2 11.2 113 207-330 196-325 (342)
48 smart00612 Kelch Kelch domain. 90.9 0.28 6E-06 29.7 2.8 34 170-207 14-47 (47)
49 PF10282 Lactonase: Lactonase, 90.2 6.1 0.00013 36.0 12.2 115 206-333 154-285 (345)
50 PF05096 Glu_cyclase_2: Glutam 89.8 13 0.00027 32.5 13.8 138 168-331 65-209 (264)
51 KOG2055 WD40 repeat protein [G 89.3 9.5 0.0002 35.5 12.1 99 224-329 279-378 (514)
52 KOG3545 Olfactomedin and relat 89.1 7.2 0.00015 33.4 10.6 137 181-334 56-211 (249)
53 TIGR02658 TTQ_MADH_Hv methylam 89.1 14 0.00031 33.7 13.4 119 203-332 202-338 (352)
54 PF07646 Kelch_2: Kelch motif; 88.8 1.4 3E-05 27.3 4.8 30 305-334 9-47 (49)
55 PF13418 Kelch_4: Galactose ox 88.3 1.3 2.9E-05 27.3 4.5 29 305-333 10-45 (49)
56 PRK11138 outer membrane biogen 87.7 15 0.00033 34.1 13.2 108 202-329 65-182 (394)
57 PF13360 PQQ_2: PQQ-like domai 87.5 16 0.00035 30.7 18.0 190 96-330 35-235 (238)
58 KOG2997 F-box protein FBX9 [Ge 87.2 0.2 4.4E-06 44.0 0.3 39 1-39 114-157 (366)
59 PF13418 Kelch_4: Galactose ox 86.3 1.1 2.4E-05 27.6 3.3 41 201-243 6-48 (49)
60 PF07762 DUF1618: Protein of u 85.1 7.2 0.00016 29.9 8.1 72 225-297 6-100 (131)
61 KOG4152 Host cell transcriptio 85.0 23 0.0005 33.8 12.2 204 106-333 56-310 (830)
62 PF05096 Glu_cyclase_2: Glutam 84.9 26 0.00056 30.6 15.0 108 201-327 48-159 (264)
63 COG4257 Vgb Streptogramin lyas 84.2 13 0.00029 32.5 9.7 122 92-245 194-317 (353)
64 COG2706 3-carboxymuconate cycl 82.7 37 0.00079 30.7 14.0 117 205-333 154-284 (346)
65 PF13360 PQQ_2: PQQ-like domai 81.3 31 0.00067 28.9 17.0 134 172-329 4-144 (238)
66 PRK11028 6-phosphogluconolacto 81.2 40 0.00087 30.2 15.0 138 170-326 11-157 (330)
67 PF08450 SGL: SMP-30/Gluconola 80.8 34 0.00075 29.1 13.8 110 201-331 4-128 (246)
68 PRK11028 6-phosphogluconolacto 80.8 42 0.00091 30.1 20.7 71 260-333 238-314 (330)
69 TIGR03300 assembly_YfgL outer 78.9 52 0.0011 30.1 12.9 105 202-329 61-167 (377)
70 COG3055 Uncharacterized protei 78.7 52 0.0011 29.9 12.9 138 171-315 196-357 (381)
71 smart00612 Kelch Kelch domain. 78.6 7 0.00015 23.2 4.8 22 224-245 14-36 (47)
72 TIGR03300 assembly_YfgL outer 78.5 54 0.0012 30.0 19.2 104 201-329 236-342 (377)
73 TIGR03866 PQQ_ABC_repeats PQQ- 77.9 45 0.00097 28.8 20.3 103 226-334 180-289 (300)
74 COG2706 3-carboxymuconate cycl 77.4 55 0.0012 29.6 18.8 153 170-333 166-331 (346)
75 PRK04792 tolB translocation pr 77.3 67 0.0015 30.5 19.1 185 106-332 241-432 (448)
76 PRK00178 tolB translocation pr 77.1 65 0.0014 30.2 19.0 185 106-332 222-413 (430)
77 PF01344 Kelch_1: Kelch motif; 76.4 14 0.0003 22.2 6.5 41 252-292 3-46 (47)
78 PRK05137 tolB translocation pr 75.9 71 0.0015 30.1 19.1 185 106-332 225-419 (435)
79 PF13415 Kelch_3: Galactose ox 71.5 4.7 0.0001 24.8 2.6 28 169-196 17-44 (49)
80 PRK11138 outer membrane biogen 67.9 1E+02 0.0022 28.5 20.0 185 96-328 119-315 (394)
81 PRK05137 tolB translocation pr 67.4 1.1E+02 0.0024 28.7 20.8 184 107-332 182-373 (435)
82 smart00564 PQQ beta-propeller 67.2 18 0.0004 19.7 4.4 24 306-329 5-28 (33)
83 PLN02772 guanylate kinase 67.2 42 0.00091 31.2 8.7 75 201-282 29-107 (398)
84 PF07250 Glyoxal_oxid_N: Glyox 67.1 83 0.0018 27.2 11.2 145 171-329 46-201 (243)
85 KOG0274 Cdc4 and related F-box 66.4 2.7 5.8E-05 40.8 1.0 35 3-37 117-151 (537)
86 KOG4341 F-box protein containi 66.0 1.8 3.8E-05 40.0 -0.3 32 1-32 79-110 (483)
87 COG4946 Uncharacterized protei 65.1 1.3E+02 0.0028 28.6 12.2 111 202-333 327-439 (668)
88 PF12458 DUF3686: ATPase invol 65.0 76 0.0016 29.7 9.7 136 95-280 236-383 (448)
89 PF03088 Str_synth: Strictosid 63.7 12 0.00026 26.7 3.7 17 316-332 36-52 (89)
90 TIGR03074 PQQ_membr_DH membran 63.1 1.8E+02 0.004 29.8 13.2 30 201-239 189-220 (764)
91 cd01206 Homer Homer type EVH1 60.5 16 0.00035 27.0 3.9 41 106-156 10-51 (111)
92 COG4946 Uncharacterized protei 59.9 66 0.0014 30.5 8.5 36 299-335 269-305 (668)
93 PRK04922 tolB translocation pr 59.8 1.6E+02 0.0034 27.8 19.8 141 170-332 227-375 (433)
94 PF01011 PQQ: PQQ enzyme repea 57.8 23 0.00049 20.4 3.6 21 309-329 2-22 (38)
95 COG3386 Gluconolactonase [Carb 54.8 1.6E+02 0.0035 26.4 11.2 32 207-246 37-68 (307)
96 PF07893 DUF1668: Protein of u 54.7 1.7E+02 0.0037 26.7 11.4 104 225-333 86-215 (342)
97 TIGR03075 PQQ_enz_alc_DH PQQ-d 53.3 2.3E+02 0.0049 27.7 12.3 113 201-329 64-193 (527)
98 KOG0279 G protein beta subunit 53.2 71 0.0015 28.1 7.1 67 257-329 200-266 (315)
99 KOG2048 WD40 repeat protein [G 52.4 1.6E+02 0.0035 29.1 10.1 97 224-329 450-552 (691)
100 KOG2437 Muskelin [Signal trans 52.1 21 0.00046 33.9 4.1 125 201-331 265-418 (723)
101 KOG0289 mRNA splicing factor [ 51.5 2.1E+02 0.0046 26.9 11.8 113 203-333 355-470 (506)
102 KOG1963 WD40 repeat protein [G 50.6 1.9E+02 0.0042 29.4 10.5 57 272-329 478-543 (792)
103 PRK03629 tolB translocation pr 49.7 2.3E+02 0.0049 26.7 19.9 141 170-332 222-370 (429)
104 KOG4378 Nuclear protein COP1 [ 48.5 56 0.0012 31.1 6.2 29 300-328 254-283 (673)
105 TIGR03866 PQQ_ABC_repeats PQQ- 48.1 1.8E+02 0.0038 24.9 20.4 92 226-329 96-191 (300)
106 PF13570 PQQ_3: PQQ-like domai 47.0 45 0.00097 19.3 3.8 20 307-326 21-40 (40)
107 PRK04043 tolB translocation pr 47.0 2.5E+02 0.0055 26.4 19.4 184 106-331 212-406 (419)
108 COG1520 FOG: WD40-like repeat 46.7 2.3E+02 0.005 25.9 12.6 134 172-329 36-175 (370)
109 PF02239 Cytochrom_D1: Cytochr 45.4 2.5E+02 0.0054 25.9 11.8 94 224-330 15-113 (369)
110 PLN02772 guanylate kinase 44.7 1.5E+02 0.0032 27.7 8.4 72 255-326 29-109 (398)
111 PRK04922 tolB translocation pr 43.9 2.8E+02 0.0061 26.0 19.8 185 106-332 227-418 (433)
112 KOG0310 Conserved WD40 repeat- 43.0 3E+02 0.0065 26.2 13.7 132 170-327 47-186 (487)
113 cd01207 Ena-Vasp Enabled-VASP- 42.8 49 0.0011 24.7 4.1 44 106-156 8-51 (111)
114 KOG0647 mRNA export protein (c 41.4 1.6E+02 0.0036 26.2 7.6 65 267-333 45-110 (347)
115 TIGR02800 propeller_TolB tol-p 41.0 2.9E+02 0.0063 25.4 20.2 186 106-332 213-404 (417)
116 PF15408 PH_7: Pleckstrin homo 41.0 8.7 0.00019 26.9 -0.1 25 11-35 76-100 (104)
117 PF14157 YmzC: YmzC-like prote 40.7 28 0.00061 22.8 2.2 25 307-331 29-55 (63)
118 PRK10115 protease 2; Provision 39.4 4.2E+02 0.0092 26.8 21.9 114 204-332 277-401 (686)
119 TIGR02800 propeller_TolB tol-p 38.5 3.2E+02 0.0069 25.2 19.2 141 171-332 214-361 (417)
120 KOG2055 WD40 repeat protein [G 38.4 1E+02 0.0022 29.1 6.2 59 272-333 234-296 (514)
121 KOG2106 Uncharacterized conser 36.1 4.1E+02 0.0088 25.7 11.3 45 203-247 284-330 (626)
122 PRK00178 tolB translocation pr 35.7 3.7E+02 0.008 25.1 19.9 142 170-332 222-370 (430)
123 PF14583 Pectate_lyase22: Olig 33.9 1.3E+02 0.0028 27.9 6.2 100 224-330 167-277 (386)
124 KOG0318 WD40 repeat stress pro 33.0 3.1E+02 0.0066 26.6 8.4 55 273-329 465-521 (603)
125 KOG0289 mRNA splicing factor [ 32.2 4.4E+02 0.0095 24.9 12.5 125 168-314 366-494 (506)
126 KOG0293 WD40 repeat-containing 31.8 3.4E+02 0.0074 25.4 8.3 65 257-327 319-386 (519)
127 PRK01742 tolB translocation pr 31.2 4.5E+02 0.0097 24.6 18.1 139 170-332 227-368 (429)
128 TIGR03032 conserved hypothetic 30.8 1.7E+02 0.0036 26.4 6.1 54 201-270 207-261 (335)
129 KOG0319 WD40-repeat-containing 30.6 4.7E+02 0.01 26.4 9.6 61 226-292 41-106 (775)
130 KOG0319 WD40-repeat-containing 30.0 6E+02 0.013 25.7 13.6 190 92-326 25-223 (775)
131 PF12217 End_beta_propel: Cata 29.7 3.4E+02 0.0075 23.8 7.6 64 202-270 196-259 (367)
132 KOG0295 WD40 repeat-containing 28.2 4.8E+02 0.01 24.0 8.5 54 272-328 313-367 (406)
133 PRK04792 tolB translocation pr 28.0 5.2E+02 0.011 24.4 20.0 142 170-332 241-389 (448)
134 PRK02889 tolB translocation pr 27.6 5.2E+02 0.011 24.2 19.8 99 224-332 263-367 (427)
135 KOG2315 Predicted translation 26.7 6.1E+02 0.013 24.7 14.3 142 98-282 231-391 (566)
136 PF15525 DUF4652: Domain of un 26.3 3.6E+02 0.0079 22.3 6.8 59 273-332 86-155 (200)
137 PF07569 Hira: TUP1-like enhan 26.2 4E+02 0.0086 22.5 9.6 77 253-333 14-103 (219)
138 KOG0294 WD40 repeat-containing 25.8 5E+02 0.011 23.5 11.0 91 201-310 47-141 (362)
139 PRK02889 tolB translocation pr 25.6 5.6E+02 0.012 24.0 19.5 185 106-331 219-409 (427)
140 PF00400 WD40: WD domain, G-be 25.2 1.3E+02 0.0028 16.6 5.7 38 286-323 1-39 (39)
141 PRK11408 hypothetical protein; 25.2 1.4E+02 0.0031 23.3 4.2 20 316-335 46-65 (145)
142 KOG0301 Phospholipase A2-activ 24.7 7.3E+02 0.016 25.0 11.6 89 226-328 201-291 (745)
143 PF14977 FAM194: FAM194 protei 24.6 4.3E+02 0.0092 22.3 7.8 71 255-329 27-98 (208)
144 KOG4152 Host cell transcriptio 24.5 5E+02 0.011 25.2 8.3 156 170-334 56-247 (830)
145 KOG0292 Vesicle coat complex C 24.2 2.7E+02 0.0058 29.0 6.8 70 257-327 212-282 (1202)
146 PF06058 DCP1: Dcp1-like decap 24.0 66 0.0014 24.4 2.2 19 317-335 29-47 (122)
147 PF05237 MoeZ_MoeB: MoeZ/MoeB 23.9 73 0.0016 22.2 2.3 19 317-335 54-72 (84)
148 smart00160 RanBD Ran-binding d 23.4 83 0.0018 24.1 2.7 27 308-335 19-45 (130)
149 KOG1332 Vesicle coat complex C 23.3 5E+02 0.011 22.6 8.3 71 262-334 223-296 (299)
150 PF10902 DUF2693: Protein of u 22.9 73 0.0016 22.4 2.1 18 317-334 49-66 (83)
151 KOG2096 WD40 repeat protein [G 22.9 4.8E+02 0.01 23.6 7.5 55 254-314 191-246 (420)
152 PF13854 Kelch_5: Kelch motif 22.8 1.7E+02 0.0037 17.0 3.9 28 254-281 8-38 (42)
153 KOG2096 WD40 repeat protein [G 22.4 5.9E+02 0.013 23.1 10.7 33 300-332 191-224 (420)
154 PLN02919 haloacid dehalogenase 20.8 1.1E+03 0.023 25.5 22.4 116 206-332 694-840 (1057)
155 TIGR02276 beta_rpt_yvtn 40-res 20.6 1.8E+02 0.0039 16.4 3.7 20 310-329 6-26 (42)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.1e-35 Score=254.06 Aligned_cols=218 Identities=22% Similarity=0.334 Sum_probs=164.0
Q ss_pred cccccceEEEeecCceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCce
Q 045559 93 RGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQ 172 (335)
Q Consensus 93 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 172 (335)
++|||||||+.. ...++||||+||+++.||+++.. ... .....++||||+.+++||||++..... ......
T Consensus 1 ~~sCnGLlc~~~-~~~~~V~NP~T~~~~~LP~~~~~-~~~-~~~~~~~~G~d~~~~~YKVv~~~~~~~------~~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSY-GKRLVVWNPSTGQSRWLPTPKSR-RSN-KESDTYFLGYDPIEKQYKVLCFSDRSG------NRNQSE 71 (230)
T ss_pred CcccceEEEEec-CCcEEEECCCCCCEEecCCCCCc-ccc-cccceEEEeecccCCcEEEEEEEeecC------CCCCcc
Confidence 479999999887 48899999999999999977643 000 111268999999999999999975311 124578
Q ss_pred EEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceee-ecCCCccccCCC
Q 045559 173 VFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEE-ILGPNCLLEISP 251 (335)
Q Consensus 173 ~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~ 251 (335)
++||++++++||.++..+....... .+|++||++||++...... ....|++||+++|+|++ +++|...... .
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~~---~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~-~ 144 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLKS---RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDS-V 144 (230)
T ss_pred EEEEEeCCCCccccccCCCCccccC---CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCcccccc-c
Confidence 9999999999999874322222221 3999999999999754311 02389999999999995 8888754321 1
Q ss_pred CeeEEEEeCCeEEEEEecCCCCEEEEEEECC--CCceeEEEEeccC---Cce---eeeEEEeeCCEEEEEecC--Ce-EE
Q 045559 252 KHTVFGLYNDSLSFLVFDERESCFDIWTMKE--RYHWTKEFSTTPI---LAV---DAPIGFWKNDTFFIRSNT--EE-LL 320 (335)
Q Consensus 252 ~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~--~~~W~~~~~i~~~---~~~---~~~~~~~~~~~il~~~~~--~~-l~ 320 (335)
....|++++|+||++........++||+|++ ..+|+++++| +. ..+ ..|.++.++|+|++...+ .. ++
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i-~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~ 223 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTV-PIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIF 223 (230)
T ss_pred cceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEE-cCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEE
Confidence 3468999999999999875345699999997 5679999999 53 222 458899999999887663 34 99
Q ss_pred EEeCCCC
Q 045559 321 LYDPNSE 327 (335)
Q Consensus 321 ~yd~~~~ 327 (335)
+||+++|
T Consensus 224 ~y~~~~~ 230 (230)
T TIGR01640 224 YYNVGEN 230 (230)
T ss_pred EEeccCC
Confidence 9999986
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=1.6e-15 Score=118.18 Aligned_cols=107 Identities=21% Similarity=0.339 Sum_probs=83.3
Q ss_pred eeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCC--CEEEEEE
Q 045559 202 CTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERE--SCFDIWT 279 (335)
Q Consensus 202 ~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~--~~~~IW~ 279 (335)
|+++||++||++...... ...|++||+++|+|+.+++|.. .........|.+++|+||++...... ..++||+
T Consensus 1 gicinGvly~~a~~~~~~----~~~IvsFDv~~E~f~~i~~P~~-~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv 75 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSD----NNVIVSFDVRSEKFRFIKLPED-PYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV 75 (129)
T ss_pred CEEECcEEEeEEEECCCC----CcEEEEEEcCCceEEEEEeeee-eccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence 589999999999873221 6799999999999999999811 11113577899999999999888522 4799999
Q ss_pred ECC--CCceeEEEEeccCC-------ceeeeEEEeeCCEEEEE
Q 045559 280 MKE--RYHWTKEFSTTPIL-------AVDAPIGFWKNDTFFIR 313 (335)
Q Consensus 280 l~~--~~~W~~~~~i~~~~-------~~~~~~~~~~~~~il~~ 313 (335)
|++ +.+|++++.+.|.. ....++++.++|+|++.
T Consensus 76 LeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 76 LEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred eeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 999 78999987753332 13678888889998776
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.63 E-value=9.7e-15 Score=118.61 Aligned_cols=127 Identities=24% Similarity=0.385 Sum_probs=88.4
Q ss_pred eeeecceEEEEeecCCCCCccCceEEEEEECCccce-eeecCCCccccCCCCeeEEEEe-CCeEEEEEecCCCCEEEEEE
Q 045559 202 CTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVF-EEILGPNCLLEISPKHTVFGLY-NDSLSFLVFDERESCFDIWT 279 (335)
Q Consensus 202 ~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~IW~ 279 (335)
+|++||.+||++...... ....|++||+++|+| ..+++|..... ......|+.. +|+||++........++||+
T Consensus 1 gV~vnG~~hW~~~~~~~~---~~~~IlsFDl~~E~F~~~~~lP~~~~~-~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWv 76 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENND---EKDFILSFDLSTEKFGRSLPLPFCNDD-DDDSVSLSVVRGDCLCVLYQCDETSKIEIWV 76 (164)
T ss_pred CEEECCEEEeeEEecCCC---CceEEEEEeccccccCCEECCCCccCc-cCCEEEEEEecCCEEEEEEeccCCccEEEEE
Confidence 689999999999876431 012799999999999 78899987662 1246677554 77899998765456799999
Q ss_pred ECC----CCceeEEEEeccCCce---e-----eeEEEeeCCEEEEEec--C-----CeEEEEeCCCCceeeccc
Q 045559 280 MKE----RYHWTKEFSTTPILAV---D-----APIGFWKNDTFFIRSN--T-----EELLLYDPNSEEIIDFQH 334 (335)
Q Consensus 280 l~~----~~~W~~~~~i~~~~~~---~-----~~~~~~~~~~il~~~~--~-----~~l~~yd~~~~~~~~v~~ 334 (335)
|++ ..+|+|.++| +.... . ..+.+..++++++..+ . ..++.|+ +.+.++++++
T Consensus 77 m~~~~~~~~SWtK~~~i-~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~ 148 (164)
T PF07734_consen 77 MKKYGYGKESWTKLFTI-DLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDI 148 (164)
T ss_pred EeeeccCcceEEEEEEE-ecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccc
Confidence 995 5799999999 44332 1 1223334456655432 1 3477777 6677777765
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.42 E-value=5.9e-12 Score=121.42 Aligned_cols=199 Identities=10% Similarity=0.030 Sum_probs=131.7
Q ss_pred ceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceec
Q 045559 107 DEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNF 186 (335)
Q Consensus 107 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 186 (335)
..+..+||.|++|..+|+++.. +..++.....+ |++.+... .. ......+++|+.+++.|..+
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~---------R~~~~~~~~~g--~IYviGG~-~~-----~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKN---------RCRFSLAVIDD--TIYAIGGQ-NG-----TNVERTIECYTMGDDKWKML 382 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcch---------hhceeEEEECC--EEEEECCc-CC-----CCCCceEEEEECCCCeEEEC
Confidence 4578999999999999988765 11122111112 33333221 00 12245799999999999999
Q ss_pred CcccccccccCCCceeeeecceEEEEeecCCCCC---------------ccCceEEEEEECCccceeee-cCCCccccCC
Q 045559 187 QGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHP---------------LCCHYVILSFDMSDEVFEEI-LGPNCLLEIS 250 (335)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~---------------~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~ 250 (335)
+.+|.+..... .+.++|.||.++....... ......+.+||+++++|+.+ ++|...
T Consensus 383 ~~mp~~r~~~~----~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r---- 454 (557)
T PHA02713 383 PDMPIALSSYG----MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT---- 454 (557)
T ss_pred CCCCccccccc----EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc----
Confidence 87777655554 7889999999986432100 00024699999999999988 555433
Q ss_pred CCeeEEEEeCCeEEEEEecCCCC-E-EEEEEECC-C-CceeEEEEeccCCceeeeEEEeeCCEEEEEecC---CeEEEEe
Q 045559 251 PKHTVFGLYNDSLSFLVFDERES-C-FDIWTMKE-R-YHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNT---EELLLYD 323 (335)
Q Consensus 251 ~~~~~l~~~~g~L~~~~~~~~~~-~-~~IW~l~~-~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~---~~l~~yd 323 (335)
....++.++|+|++++...+.. . -.+...+. . ..|+....+ |.+.....+++. +|+|++..+. ..+-.||
T Consensus 455 -~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 455 -IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH-DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred -ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE-CCEEEEEeeecceeehhhcC
Confidence 3446889999999998753111 1 13566776 5 589998777 655443333333 7888877652 2589999
Q ss_pred CCCCceeecc
Q 045559 324 PNSEEIIDFQ 333 (335)
Q Consensus 324 ~~~~~~~~v~ 333 (335)
++|++|+.+.
T Consensus 532 ~~~~~W~~~~ 541 (557)
T PHA02713 532 VYTYEWNHIC 541 (557)
T ss_pred cccccccchh
Confidence 9999998763
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.32 E-value=1.3e-10 Score=112.11 Aligned_cols=196 Identities=9% Similarity=0.064 Sum_probs=128.1
Q ss_pred eEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceecC
Q 045559 108 EIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQ 187 (335)
Q Consensus 108 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 187 (335)
.+..+||.|++|..+++++.. . ..++.....+ +|+.+...... ......++.|+..++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~-----r----~~~~~a~l~~--~IYviGG~~~~-----~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNH-----I----INYASAIVDN--EIIIAGGYNFN-----NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcc-----c----cceEEEEECC--EEEEEcCCCCC-----CCccceEEEEECCCCeEeeCC
Confidence 467899999999999988765 1 1111111112 33333221000 112357899999999999988
Q ss_pred cccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCeEEEE
Q 045559 188 GFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSFL 266 (335)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~~ 266 (335)
.+|.+.... ..+.++|.+|.++...... ....+.+||+.+++|+.+ ++|... .....+.++|+|+++
T Consensus 337 ~m~~~R~~~----~~~~~~g~IYviGG~~~~~---~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~~~~~~~g~IYvi 404 (557)
T PHA02713 337 PMIKNRCRF----SLAVIDDTIYAIGGQNGTN---VERTIECYTMGDDKWKMLPDMPIAL-----SSYGMCVLDQYIYII 404 (557)
T ss_pred CCcchhhce----eEEEECCEEEEECCcCCCC---CCceEEEEECCCCeEEECCCCCccc-----ccccEEEECCEEEEE
Confidence 776665444 3899999999998764221 134699999999999998 556543 234577899999999
Q ss_pred EecCCCC-------------------EEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecC-------CeE
Q 045559 267 VFDERES-------------------CFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNT-------EEL 319 (335)
Q Consensus 267 ~~~~~~~-------------------~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-------~~l 319 (335)
+...... .-.+...+. ...|+....+ +.+.....++ .-+|+|++..+. ..+
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-CcccccCcEE-EECCEEEEEeCCCCCCccceeE
Confidence 8753110 123566666 6899887666 4443322233 337888877642 246
Q ss_pred EEEeCCC-Cceeecc
Q 045559 320 LLYDPNS-EEIIDFQ 333 (335)
Q Consensus 320 ~~yd~~~-~~~~~v~ 333 (335)
..||+++ ++|+.+.
T Consensus 483 e~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 483 FRYNTNTYNGWELIT 497 (557)
T ss_pred EEecCCCCCCeeEcc
Confidence 8999999 8998763
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.31 E-value=1.2e-10 Score=112.24 Aligned_cols=212 Identities=10% Similarity=0.011 Sum_probs=143.1
Q ss_pred ccccccceEEEeec-------CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccc
Q 045559 92 FRGPFEGLFIMFIG-------GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELG 164 (335)
Q Consensus 92 ~~~s~~GLl~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~ 164 (335)
-++..+|.|-...+ .+....+||.|.+|..+|++... +..+|.....+.-.+|....
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~---------R~~~~v~~l~g~iYavGG~d------- 390 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK---------RSDFGVAVLDGKLYAVGGFD------- 390 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc---------cccceeEEECCEEEEEeccc-------
Confidence 33455665543331 35689999999999999999876 34444433333333333321
Q ss_pred cccCCCceEEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCC
Q 045559 165 KVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGP 243 (335)
Q Consensus 165 ~~~~~~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 243 (335)
+......+|.|+..++.|..++.++.+...+ .++.++|.+|-++...... ..-..+.+||+.+++|+.+ +++
T Consensus 391 -g~~~l~svE~YDp~~~~W~~va~m~~~r~~~----gv~~~~g~iYi~GG~~~~~--~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 391 -GEKSLNSVECYDPVTNKWTPVAPMLTRRSGH----GVAVLGGKLYIIGGGDGSS--NCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred -cccccccEEEecCCCCcccccCCCCcceeee----EEEEECCEEEEEcCcCCCc--cccceEEEEcCCCCceeecCCcc
Confidence 1344568999999999999998776654444 4899999999998755321 0135899999999999998 666
Q ss_pred CccccCCCCeeEEEEeCCeEEEEEecCCC-CEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEec------
Q 045559 244 NCLLEISPKHTVFGLYNDSLSFLVFDERE-SCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSN------ 315 (335)
Q Consensus 244 ~~~~~~~~~~~~l~~~~g~L~~~~~~~~~-~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------ 315 (335)
... ....++.++|.|++++...+. ..-.|-..+. ...|+....+ +.+.. ..-++.-++.+++..+
T Consensus 464 ~~R-----~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-~~~rs-~~g~~~~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 464 TRR-----SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-TSPRS-AVGVVVLGGKLYAVGGFDGNNN 536 (571)
T ss_pred ccc-----ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC-ccccc-cccEEEECCEEEEEecccCccc
Confidence 654 345589999999999997531 1223555665 7899998555 33221 1111223677777654
Q ss_pred CCeEEEEeCCCCceeecc
Q 045559 316 TEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 316 ~~~l~~yd~~~~~~~~v~ 333 (335)
-+.+-.||+++++|+++.
T Consensus 537 l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 537 LNTVECYDPETDTWTEVT 554 (571)
T ss_pred cceeEEcCCCCCceeeCC
Confidence 246999999999998753
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.27 E-value=3.2e-10 Score=107.84 Aligned_cols=187 Identities=7% Similarity=0.000 Sum_probs=124.2
Q ss_pred ceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceec
Q 045559 107 DEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNF 186 (335)
Q Consensus 107 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 186 (335)
.....+||.+++|..+|+++.. .. ..+... ..+ ++..+... .....++.|+..+++|..+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~-----r~--~~~~v~--~~~--~iYviGG~---------~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSP-----RL--YASGVP--ANN--KLYVVGGL---------PNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CeEEEEECCCCEEEECCCCCch-----hh--cceEEE--ECC--EEEEECCc---------CCCCceEEEECCCCeEEEC
Confidence 4577899999999999988765 11 111111 112 33333211 1124589999999999999
Q ss_pred CcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEE
Q 045559 187 QGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFL 266 (335)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~ 266 (335)
+++|.+.... .++.++|.||.++..... ...+.+||+++++|+.++.++... .....+..+|+|+++
T Consensus 347 ~~l~~~r~~~----~~~~~~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~~~~~~IYv~ 413 (480)
T PHA02790 347 PSLLKPRCNP----AVASINNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPH----YKSCALVFGRRLFLV 413 (480)
T ss_pred CCCCCCCccc----EEEEECCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCcc----ccceEEEECCEEEEE
Confidence 8777665444 389999999999875421 246789999999999984333221 234567899999999
Q ss_pred EecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCEEEEEecC------CeEEEEeCCCCceeeccc
Q 045559 267 VFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNT------EELLLYDPNSEEIIDFQH 334 (335)
Q Consensus 267 ~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~~~~~~~v~~ 334 (335)
+.. .+++-.+ .+.|+..-.+ +.+.....+++ -+|+|++..+. ..+..||+++++|+-...
T Consensus 414 GG~-----~e~ydp~-~~~W~~~~~m-~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~~ 479 (480)
T PHA02790 414 GRN-----AEFYCES-SNTWTLIDDP-IYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWDG 479 (480)
T ss_pred CCc-----eEEecCC-CCcEeEcCCC-CCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEecCC
Confidence 852 3444434 5899987655 44333222333 37888887652 458999999999986543
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.27 E-value=2.7e-10 Score=110.23 Aligned_cols=197 Identities=12% Similarity=0.083 Sum_probs=127.9
Q ss_pred ceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceec
Q 045559 107 DEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNF 186 (335)
Q Consensus 107 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 186 (335)
..++.+||.|++|..+|.++..+ .. .+... ..+. ++.+... .. ......+++|+..+++|+..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R----~~---~~~~~--~~~~--lyv~GG~-~~-----~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPR----KN---PGVTV--FNNR--IYVIGGI-YN-----SISLNTVESWKPGESKWREE 373 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccc----cc---ceEEE--ECCE--EEEEeCC-CC-----CEecceEEEEcCCCCceeeC
Confidence 36889999999999999876540 11 11111 1122 3333211 01 12345789999999999998
Q ss_pred CcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCeEEE
Q 045559 187 QGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSF 265 (335)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~ 265 (335)
+.+|.+..... ++.++|.+|.++...... .....+..||+.+++|+.+ ++|... .....+..+|+|++
T Consensus 374 ~~lp~~r~~~~----~~~~~~~iYv~GG~~~~~--~~~~~v~~yd~~t~~W~~~~~~p~~r-----~~~~~~~~~~~iyv 442 (534)
T PHA03098 374 PPLIFPRYNPC----VVNVNNLIYVIGGISKND--ELLKTVECFSLNTNKWSKGSPLPISH-----YGGCAIYHDGKIYV 442 (534)
T ss_pred CCcCcCCccce----EEEECCEEEEECCcCCCC--cccceEEEEeCCCCeeeecCCCCccc-----cCceEEEECCEEEE
Confidence 87776654443 788999999998743210 0024789999999999998 555433 23346778999999
Q ss_pred EEecCCCC----EEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEec------CCeEEEEeCCCCceeecc
Q 045559 266 LVFDERES----CFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSN------TEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 266 ~~~~~~~~----~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~ 333 (335)
++...... .-.+|+.+. +..|...-.+ +.+......++ -+++|++..+ .+.+..||+++++|+.+.
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSL-NFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCC-CcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 98753111 123777777 7899987555 44332222232 3778877664 246999999999998764
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.23 E-value=4.3e-10 Score=108.37 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=136.6
Q ss_pred ceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceec
Q 045559 107 DEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNF 186 (335)
Q Consensus 107 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 186 (335)
..+..+||.+++|..+.+++.. .. ..+.+.- .+ +|+.+..... +......+++|++.+++|..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~-----r~--~~~~~~~--~~--~lYv~GG~~~-----~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSP-----RC--RVGVAVL--NG--KLYVVGGYDS-----GSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcc-----cc--cccEEEE--CC--EEEEEccccC-----CCcccceEEEecCCCCceecc
Confidence 4677899999999999998876 11 1222222 12 4444332110 134567899999999999998
Q ss_pred CcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCeEEE
Q 045559 187 QGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSF 265 (335)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~ 265 (335)
+++..+.... ..+.++|.+|.++...... ....+.+||..+++|+.+ +++... .....++.+|+||+
T Consensus 365 a~M~~~R~~~----~v~~l~g~iYavGG~dg~~---~l~svE~YDp~~~~W~~va~m~~~r-----~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 365 APMNTKRSDF----GVAVLDGKLYAVGGFDGEK---SLNSVECYDPVTNKWTPVAPMLTRR-----SGHGVAVLGGKLYI 432 (571)
T ss_pred CCccCccccc----eeEEECCEEEEEecccccc---ccccEEEecCCCCcccccCCCCcce-----eeeEEEEECCEEEE
Confidence 8666555554 3899999999999876421 134799999999999999 566633 45678999999999
Q ss_pred EEecCCC----CEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCEEEEEec------CCeEEEEeCCCCceeecc
Q 045559 266 LVFDERE----SCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSN------TEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 266 ~~~~~~~----~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~ 333 (335)
++..... .+++.+--. ++.|+.+-.+ +.+.....+++. ++.|+...+ ...+-.||+++++|+.+.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~-t~~W~~~~~M-~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPE-TNTWTLIAPM-NTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EcCcCCCccccceEEEEcCC-CCceeecCCc-ccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 9996422 233333333 6999998877 555444445543 788888775 234899999999999874
No 10
>PLN02153 epithiospecifier protein
Probab=99.11 E-value=1e-08 Score=93.47 Aligned_cols=208 Identities=11% Similarity=0.056 Sum_probs=120.7
Q ss_pred ceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceec
Q 045559 107 DEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNF 186 (335)
Q Consensus 107 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 186 (335)
..++++||.|++|..+|+.... +. .. ..+++.....+ +++.+... .. ......+++|+.++++|+.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~--p~-~~--~~~~~~~~~~~--~iyv~GG~-~~-----~~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDV--PR-IS--CLGVRMVAVGT--KLYIFGGR-DE-----KREFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCC--CC-Cc--cCceEEEEECC--EEEEECCC-CC-----CCccCcEEEEECCCCEEEEe
Confidence 4689999999999998865422 00 00 11111111112 23333211 01 11234689999999999987
Q ss_pred Ccc-----cccccccCCCceeeeecceEEEEeecCCCC--C-ccCceEEEEEECCccceeeecCCCccccCCCCeeEEEE
Q 045559 187 QGF-----EFGMYDLDEVLDCTYHNGACHWLVPFGAFH--P-LCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGL 258 (335)
Q Consensus 187 ~~~-----p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~--~-~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~ 258 (335)
+.+ |.+...+ ..+..+|.+|.+....... . ......+.+||+++++|..++.+..... .+....++.
T Consensus 117 ~~~~~~~~p~~R~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~-~r~~~~~~~ 191 (341)
T PLN02153 117 TKLDEEGGPEARTFH----SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE-KRGGAGFAV 191 (341)
T ss_pred ccCCCCCCCCCceee----EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC-CCCcceEEE
Confidence 654 3333333 3788999999997653210 0 0001358899999999998754321100 012335678
Q ss_pred eCCeEEEEEecCC---------CCEEEEEEECC-CCceeEEEEec--cCCceeeeEEEeeCCEEEEEecC----------
Q 045559 259 YNDSLSFLVFDER---------ESCFDIWTMKE-RYHWTKEFSTT--PILAVDAPIGFWKNDTFFIRSNT---------- 316 (335)
Q Consensus 259 ~~g~L~~~~~~~~---------~~~~~IW~l~~-~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------- 316 (335)
.+|+|+++..... ...-++++++. ...|+++.... |.+....... .-+++|++..+.
T Consensus 192 ~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~ 270 (341)
T PLN02153 192 VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLG 270 (341)
T ss_pred ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCccccccc
Confidence 8999999865320 01124566665 68999875431 3222222222 235677766542
Q ss_pred -----CeEEEEeCCCCceeecc
Q 045559 317 -----EELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 317 -----~~l~~yd~~~~~~~~v~ 333 (335)
+.++.||+++++|+++.
T Consensus 271 ~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 271 PGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred cccccccEEEEEcCccEEEecc
Confidence 26899999999999874
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.07 E-value=1.5e-08 Score=91.66 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCcc----eecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCC
Q 045559 170 SRQVFIYSFSDNSW----RNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPN 244 (335)
Q Consensus 170 ~~~~~vyss~~~~W----~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~ 244 (335)
...++.|+..++.| +..+.+|.+...+ .++.++|.||.+....... ....+.+||+.+++|+.+ ++|.
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~----~~~~~~~~iYv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~ 159 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENG----SACYKDGTLYVGGGNRNGK---PSNKSYLFNLETQEWFELPDFPG 159 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCc----eEEEECCEEEEEeCcCCCc---cCceEEEEcCCCCCeeECCCCCC
Confidence 35788999998887 5565555554444 3788999999998653211 134789999999999998 4664
Q ss_pred ccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCc-----eeeeEEEeeCCEEEEEecC--
Q 045559 245 CLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILA-----VDAPIGFWKNDTFFIRSNT-- 316 (335)
Q Consensus 245 ~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~-----~~~~~~~~~~~~il~~~~~-- 316 (335)
... .....+..+++|++++........++|+.+. ...|++...+ +... ......+..+++|++..+.
T Consensus 160 ~~r----~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 160 EPR----VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP-TTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred CCC----CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCC-CCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 321 3345678899999998864233345677776 6899876543 2111 1122222335777776531
Q ss_pred ------------------------------------CeEEEEeCCCCceeecc
Q 045559 317 ------------------------------------EELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 317 ------------------------------------~~l~~yd~~~~~~~~v~ 333 (335)
+.+..||+++++|+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 235 DVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 36999999999998764
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.05 E-value=4.1e-08 Score=89.74 Aligned_cols=208 Identities=11% Similarity=0.066 Sum_probs=120.3
Q ss_pred CceEEEEec--chhhhhcCCCCcc-cCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCc
Q 045559 106 GDEIALYNH--ATRDLKFLPKLTL-IDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNS 182 (335)
Q Consensus 106 ~~~~~V~NP--~T~~~~~LP~~~~-~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~ 182 (335)
...++++++ .+++|..+|+++. . +. ..++.. ..+ +|+.+.................++.|+..+++
T Consensus 28 ~~~~~~~d~~~~~~~W~~l~~~p~~~----R~---~~~~~~--~~~--~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 28 GTSWYKLDLKKPSKGWQKIADFPGGP----RN---QAVAAA--IDG--KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCeeEEEECCCCCCCceECCCCCCCC----cc---cceEEE--ECC--EEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 356778874 6788999998763 2 01 111111 112 33333221000000000123478999999999
Q ss_pred ceecCc-ccccccccCCCceee-eecceEEEEeecCCCC------------Cc-------------------cCceEEEE
Q 045559 183 WRNFQG-FEFGMYDLDEVLDCT-YHNGACHWLVPFGAFH------------PL-------------------CCHYVILS 229 (335)
Q Consensus 183 W~~~~~-~p~~~~~~~~~~~~v-~~~G~~ywl~~~~~~~------------~~-------------------~~~~~i~~ 229 (335)
|+.++. +|...... .++ .++|.||.+....... .. .....+.+
T Consensus 97 W~~~~~~~p~~~~~~----~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (346)
T TIGR03547 97 WQKLDTRSPVGLLGA----SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLS 172 (346)
T ss_pred EecCCCCCCCcccce----eEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEE
Confidence 999862 22322222 134 6899999997653100 00 00146999
Q ss_pred EECCccceeee-cCCCccccCCCCeeEEEEeCCeEEEEEecC--CCCEEEEEEE--CC-CCceeEEEEeccCCce-----
Q 045559 230 FDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSFLVFDE--RESCFDIWTM--KE-RYHWTKEFSTTPILAV----- 298 (335)
Q Consensus 230 fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~--~~~~~~IW~l--~~-~~~W~~~~~i~~~~~~----- 298 (335)
||+.+++|+.+ ++|.... ....++..+|+|+++.... .....++|.. +. ...|...-.+ |.+..
T Consensus 173 YDp~t~~W~~~~~~p~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m-~~~r~~~~~~ 247 (346)
T TIGR03547 173 YDPSTNQWRNLGENPFLGT----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL-PPPKSSSQEG 247 (346)
T ss_pred EECCCCceeECccCCCCcC----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC-CCCCCCcccc
Confidence 99999999999 5664221 3446788999999998763 1123445554 33 4689987666 43321
Q ss_pred -eeeEEEeeCCEEEEEecC-----------------------CeEEEEeCCCCceeecc
Q 045559 299 -DAPIGFWKNDTFFIRSNT-----------------------EELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 299 -~~~~~~~~~~~il~~~~~-----------------------~~l~~yd~~~~~~~~v~ 333 (335)
....++.-+++|++..+. ..+-.||+++++|+.+.
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 111123347888876542 14679999999998763
No 13
>PLN02193 nitrile-specifier protein
Probab=99.04 E-value=2.5e-08 Score=94.64 Aligned_cols=205 Identities=8% Similarity=0.016 Sum_probs=123.6
Q ss_pred ceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceec
Q 045559 107 DEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNF 186 (335)
Q Consensus 107 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 186 (335)
..++++||.|.+|..+|..... +. .......+... .+ +++.+... .. ......+++|++.+++|+.+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~--P~-~~~~~~~~v~~--~~--~lYvfGG~-~~-----~~~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDV--PH-LSCLGVRMVSI--GS--TLYVFGGR-DA-----SRQYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCC--CC-CcccceEEEEE--CC--EEEEECCC-CC-----CCCCccEEEEECCCCEEEEc
Confidence 3588999999999987754221 00 00001111111 11 23333211 00 12235789999999999988
Q ss_pred Ccc---cccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeE
Q 045559 187 QGF---EFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSL 263 (335)
Q Consensus 187 ~~~---p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L 263 (335)
..+ |.+...+ ..+.+++.||.+....... ....+.+||+.+.+|+.++.|..... .+....++..+|++
T Consensus 260 ~~~~~~P~~R~~h----~~~~~~~~iYv~GG~~~~~---~~~~~~~yd~~t~~W~~~~~~~~~~~-~R~~~~~~~~~gki 331 (470)
T PLN02193 260 TPVEEGPTPRSFH----SMAADEENVYVFGGVSATA---RLKTLDSYNIVDKKWFHCSTPGDSFS-IRGGAGLEVVQGKV 331 (470)
T ss_pred CcCCCCCCCccce----EEEEECCEEEEECCCCCCC---CcceEEEEECCCCEEEeCCCCCCCCC-CCCCcEEEEECCcE
Confidence 754 3333333 3678899999998654211 12468899999999998865432111 12334567789999
Q ss_pred EEEEecCCCCEEEEEEECC-CCceeEEEEec--cCCceeeeEEEeeCCEEEEEecC---------------CeEEEEeCC
Q 045559 264 SFLVFDERESCFDIWTMKE-RYHWTKEFSTT--PILAVDAPIGFWKNDTFFIRSNT---------------EELLLYDPN 325 (335)
Q Consensus 264 ~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~ 325 (335)
+++........-++|+++. +..|++...+. |.+....... .-+++|++..+. +.++.||++
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 9998754222345777776 68999876542 3332222222 336777766541 248999999
Q ss_pred CCceeecc
Q 045559 326 SEEIIDFQ 333 (335)
Q Consensus 326 ~~~~~~v~ 333 (335)
+++|+++.
T Consensus 411 t~~W~~~~ 418 (470)
T PLN02193 411 TLQWERLD 418 (470)
T ss_pred cCEEEEcc
Confidence 99999875
No 14
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.03 E-value=1.4e-07 Score=84.98 Aligned_cols=292 Identities=12% Similarity=0.110 Sum_probs=139.6
Q ss_pred ChhhHhccCC-hhhhhhheeccccchhhhCChHhHHHHHhhcCCCCceeeeccCCCCCCCcceeeeeccCCCCcc--ccc
Q 045559 1 MVVEILSKFP-VKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLA--NIS 77 (335)
Q Consensus 1 ll~eIL~rLP-~k~l~r~r~VcK~W~~li~sp~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 77 (335)
||..|..||| .-+++|+|+|||+||+.+.... +. ...++.|+++. ....|. ..+. + +...+. |..
T Consensus 11 ll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~~~~-~~~~~~----~~~~-~--~~~~~~~~~~~ 78 (373)
T PLN03215 11 LLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPLILF-NPINPS----ETLT-D--DRSYISRPGAF 78 (373)
T ss_pred HHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCccccccccc-CcccCC----CCcc-c--cccccccccce
Confidence 5788999997 6699999999999999876310 00 00111122221 000000 0000 0 000000 000
Q ss_pred cccccccCCCCCccccccccceEEEeec---CceEEEEecchhhhhcCCCCcccCCcCCceee----eeEE-eecCCC--
Q 045559 78 LEEDLILLIPIEEHFRGPFEGLFIMFIG---GDEIALYNHATRDLKFLPKLTLIDNLESIYTI----MFGL-GLDPKC-- 147 (335)
Q Consensus 78 ~~~~~~~~~p~~~~~~~s~~GLl~~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~----~~~l-~~d~~~-- 147 (335)
+.....+.++. ..++..|.|.-... ...+.+.||+++.-..+|+...+ . -++... .+.+ +.+...
T Consensus 79 ls~~~~~r~~~---~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~ln-l-l~f~v~ei~~~y~l~~~~~~~~~ 153 (373)
T PLN03215 79 LSRAAFFRVTL---SSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVD-L-LEFTVSEIREAYQVLDWAKRRET 153 (373)
T ss_pred eeeeEEEEeec---CCCCCCCcEEEEeccccCCccEecCccccCccCCCCccce-e-eeeEEEEccceEEEEeccccccc
Confidence 00000011111 11356777766542 57889999999997777753332 0 001100 2222 111000
Q ss_pred -CCeEEEEEEEEecCccccccCCCceEEEEEc------CCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCC
Q 045559 148 -NYYKLVYIVTYHDSELGKVLNDSRQVFIYSF------SDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHP 220 (335)
Q Consensus 148 -~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss------~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~ 220 (335)
..|+.+.+....... ......+-|+.. +.+.|..++. ...... .-++++|.+|.+...+
T Consensus 154 ~~~~~~~~~~~~~~~~----~~~~~vl~i~~~g~l~~w~~~~Wt~l~~---~~~~~~---DIi~~kGkfYAvD~~G---- 219 (373)
T PLN03215 154 RPGYQRSALVKVKEGD----NHRDGVLGIGRDGKINYWDGNVLKALKQ---MGYHFS---DIIVHKGQTYALDSIG---- 219 (373)
T ss_pred ccceeEEEEEEeecCC----CcceEEEEEeecCcEeeecCCeeeEccC---CCceee---EEEEECCEEEEEcCCC----
Confidence 013211111111110 000112222211 1367776642 111121 4799999999985433
Q ss_pred ccCceEEEEEECCccceeeecCCCc--cc-cCCCCeeEEEEeCCeEEEEEecC---------------CCCEEEEEEECC
Q 045559 221 LCCHYVILSFDMSDEVFEEILGPNC--LL-EISPKHTVFGLYNDSLSFLVFDE---------------RESCFDIWTMKE 282 (335)
Q Consensus 221 ~~~~~~i~~fD~~~e~~~~i~~P~~--~~-~~~~~~~~l~~~~g~L~~~~~~~---------------~~~~~~IW~l~~ 282 (335)
.+.++|.+- ..+.+..+.. .. ........|+++.|+|.++.... ....++|+.++.
T Consensus 220 -----~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~ 293 (373)
T PLN03215 220 -----IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD 293 (373)
T ss_pred -----eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC
Confidence 466666432 1222211110 00 00013567999999999998742 124689999988
Q ss_pred -CCceeEEEEeccCCce----eeeEEE-------eeCCEEEEEecCCeEEEEeCCCCceee
Q 045559 283 -RYHWTKEFSTTPILAV----DAPIGF-------WKNDTFFIRSNTEELLLYDPNSEEIID 331 (335)
Q Consensus 283 -~~~W~~~~~i~~~~~~----~~~~~~-------~~~~~il~~~~~~~l~~yd~~~~~~~~ 331 (335)
...|+++.+++ -..+ -..+++ ...+.|++..+ ....+||++.++..-
T Consensus 294 ~~~~WveV~sLg-d~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd-~~~~v~~~~dg~~~~ 352 (373)
T PLN03215 294 ELAKWMEVKTLG-DNAFVMATDTCFSVLAHEFYGCLPNSIYFTED-TMPKVFKLDNGNGSS 352 (373)
T ss_pred CCCcEEEecccC-CeEEEEECCccEEEecCCCCCccCCEEEEECC-CcceEEECCCCCccc
Confidence 78999988773 1111 001111 11344666654 457899999987443
No 15
>PHA03098 kelch-like protein; Provisional
Probab=98.93 E-value=4.1e-08 Score=95.02 Aligned_cols=149 Identities=11% Similarity=0.081 Sum_probs=103.3
Q ss_pred ceEEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccccC
Q 045559 171 RQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLEI 249 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~ 249 (335)
..++.|+..++.|..++.+|.+.... ..+.++|.+|.++...... ....+..||+.+.+|+.+ ++|...
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~----~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~lp~~r--- 380 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNP----GVTVFNNRIYVIGGIYNSI---SLNTVESWKPGESKWREEPPLIFPR--- 380 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccc----eEEEECCEEEEEeCCCCCE---ecceEEEEcCCCCceeeCCCcCcCC---
Confidence 46899999999999887766554444 3788999999998765221 134688999999999988 555433
Q ss_pred CCCeeEEEEeCCeEEEEEecC--CCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecC---------C
Q 045559 250 SPKHTVFGLYNDSLSFLVFDE--RESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNT---------E 317 (335)
Q Consensus 250 ~~~~~~l~~~~g~L~~~~~~~--~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~---------~ 317 (335)
.....+..+|++++++... ....-.++..+. +..|.....+ |.+..... ++..++.|++..+. .
T Consensus 381 --~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~ 456 (534)
T PHA03098 381 --YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL-PISHYGGC-AIYHDGKIYVIGGISYIDNIKVYN 456 (534)
T ss_pred --ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC-CccccCce-EEEECCEEEEECCccCCCCCcccc
Confidence 3345678899999998853 111234555555 5899987655 54433222 23346788776541 2
Q ss_pred eEEEEeCCCCceeecc
Q 045559 318 ELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 318 ~l~~yd~~~~~~~~v~ 333 (335)
.+..||+++++|+++.
T Consensus 457 ~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 457 IVESYNPVTNKWTELS 472 (534)
T ss_pred eEEEecCCCCceeeCC
Confidence 4899999999999874
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.89 E-value=1.4e-07 Score=87.17 Aligned_cols=221 Identities=10% Similarity=0.026 Sum_probs=124.2
Q ss_pred ccccceEEEee--cCceEEEEecc--hhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCC
Q 045559 94 GPFEGLFIMFI--GGDEIALYNHA--TRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLND 169 (335)
Q Consensus 94 ~s~~GLl~~~~--~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~ 169 (335)
+..++-|-+.. ....++++++. +++|..+|+++.. + +.+++.....+...|+.... .....+....
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~------r~~~~~v~~~~~IYV~GG~~--~~~~~~~~~~ 104 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG--P------REQAVAAFIDGKLYVFGGIG--KTNSEGSPQV 104 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC--C------cccceEEEECCEEEEEcCCC--CCCCCCceeE
Confidence 34555554433 23457788775 4789999876532 0 11111111112333333211 1000000012
Q ss_pred CceEEEEEcCCCcceecCc-ccccccccCCCceeee-ecceEEEEeecCCC---C-------------------------
Q 045559 170 SRQVFIYSFSDNSWRNFQG-FEFGMYDLDEVLDCTY-HNGACHWLVPFGAF---H------------------------- 219 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~-~p~~~~~~~~~~~~v~-~~G~~ywl~~~~~~---~------------------------- 219 (335)
...+++|+..+++|+.++. .|.+...+ .++. .+|.||.++..... .
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~~----~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~ 180 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAGH----VAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDK 180 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccce----EEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcC
Confidence 3478999999999999863 23332222 2344 79999999875310 0
Q ss_pred -C--ccCceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCeEEEEEecC--CCCEEEEEE--ECC-CCceeEEE
Q 045559 220 -P--LCCHYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSFLVFDE--RESCFDIWT--MKE-RYHWTKEF 290 (335)
Q Consensus 220 -~--~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~--~~~~~~IW~--l~~-~~~W~~~~ 290 (335)
+ ......+.+||+.+++|+.+ ++|.... ....++..+++|++++... .....++|. ++. ...|.+..
T Consensus 181 ~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 181 KPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred ChhhcCcCceEEEEECCCCeeeECCcCCCCCC----CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 0 00014699999999999998 5664221 2345778899999998752 223455664 433 57899877
Q ss_pred EeccCCce-------eeeEEEeeCCEEEEEecCC-----------------------eEEEEeCCCCceeecc
Q 045559 291 STTPILAV-------DAPIGFWKNDTFFIRSNTE-----------------------ELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 291 ~i~~~~~~-------~~~~~~~~~~~il~~~~~~-----------------------~l~~yd~~~~~~~~v~ 333 (335)
.+ |.+.. ....++.-+++|++..+.. .+-.||+++++|+++.
T Consensus 257 ~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 257 DL-PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CC-CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 66 43321 1111233467887765411 2457999999998764
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=98.88 E-value=5.8e-08 Score=92.44 Aligned_cols=144 Identities=8% Similarity=0.006 Sum_probs=103.3
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCcccc
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLE 248 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~ 248 (335)
...++.|+..++.|..++.++.+..... .+.++|.+|.++.... ...+..||+.+++|..+ ++|...
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~~~----~v~~~~~iYviGG~~~------~~sve~ydp~~n~W~~~~~l~~~r-- 353 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRLYAS----GVPANNKLYVVGGLPN------PTSVERWFHGDAAWVNMPSLLKPR-- 353 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhhcce----EEEECCEEEEECCcCC------CCceEEEECCCCeEEECCCCCCCC--
Confidence 3568999999999999987766544443 7889999999987642 23578999999999988 555433
Q ss_pred CCCCeeEEEEeCCeEEEEEecCC-CCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeCCCC
Q 045559 249 ISPKHTVFGLYNDSLSFLVFDER-ESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSE 327 (335)
Q Consensus 249 ~~~~~~~l~~~~g~L~~~~~~~~-~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~ 327 (335)
.....+.++|+|++++.... ...++.|-.+ ...|+..-.+ +.+.... .++.-+|+|++..+ ..-.||++++
T Consensus 354 ---~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~-~~~W~~~~~m-~~~r~~~-~~~~~~~~IYv~GG--~~e~ydp~~~ 425 (480)
T PHA02790 354 ---CNPAVASINNVIYVIGGHSETDTTTEYLLPN-HDQWQFGPST-YYPHYKS-CALVFGRRLFLVGR--NAEFYCESSN 425 (480)
T ss_pred ---cccEEEEECCEEEEecCcCCCCccEEEEeCC-CCEEEeCCCC-CCccccc-eEEEECCEEEEECC--ceEEecCCCC
Confidence 34567899999999988642 2445555444 5899886555 4333222 22334788888765 3678999999
Q ss_pred ceeecc
Q 045559 328 EIIDFQ 333 (335)
Q Consensus 328 ~~~~v~ 333 (335)
+|+.+.
T Consensus 426 ~W~~~~ 431 (480)
T PHA02790 426 TWTLID 431 (480)
T ss_pred cEeEcC
Confidence 998763
No 18
>PLN02153 epithiospecifier protein
Probab=98.75 E-value=7.1e-07 Score=81.38 Aligned_cols=157 Identities=7% Similarity=0.025 Sum_probs=96.3
Q ss_pred ceEEEEEcCCCcceecCccc-cccc-ccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccc
Q 045559 171 RQVFIYSFSDNSWRNFQGFE-FGMY-DLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLL 247 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p-~~~~-~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~ 247 (335)
..+++|+..++.|...+.++ .+.. ... ...+.++|.||.+....... ....+.+||+.+++|+.+ +++....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~--~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~ 124 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLG--VRMVAVGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGG 124 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCc--eEEEEECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCC
Confidence 46899999999999876432 2211 111 24788999999998753221 023689999999999988 3321100
Q ss_pred cCCCCeeEEEEeCCeEEEEEecCCC-------CEEEEEEECC-CCceeEEEEec-c-CCceeeeEEEeeCCEEEEEec--
Q 045559 248 EISPKHTVFGLYNDSLSFLVFDERE-------SCFDIWTMKE-RYHWTKEFSTT-P-ILAVDAPIGFWKNDTFFIRSN-- 315 (335)
Q Consensus 248 ~~~~~~~~l~~~~g~L~~~~~~~~~-------~~~~IW~l~~-~~~W~~~~~i~-~-~~~~~~~~~~~~~~~il~~~~-- 315 (335)
...+.....+..+++|++++..... ..-++|+++. ...|..+-... + .+.....+++ -+++|++..+
T Consensus 125 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~ 203 (341)
T PLN02153 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFA 203 (341)
T ss_pred CCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccc
Confidence 0111344567889999999875311 1124666666 68898754331 1 1111122232 3677766432
Q ss_pred ------------CCeEEEEeCCCCceeecc
Q 045559 316 ------------TEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 316 ------------~~~l~~yd~~~~~~~~v~ 333 (335)
.+.+..||+++++|+++.
T Consensus 204 ~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 204 TSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred cccccCCccceecCceEEEEcCCCcEEecc
Confidence 246999999999999875
No 19
>PLN02193 nitrile-specifier protein
Probab=98.67 E-value=1.3e-06 Score=83.08 Aligned_cols=155 Identities=7% Similarity=0.065 Sum_probs=95.5
Q ss_pred ceEEEEEcCCCcceecCcc-cccc-cccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccc
Q 045559 171 RQVFIYSFSDNSWRNFQGF-EFGM-YDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLL 247 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~-p~~~-~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~ 247 (335)
..+++|+.+++.|..++.. +.+. .... ...+.+++.+|.+....... ....+.+||+.+++|+.+ +++....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~--~~~v~~~~~lYvfGG~~~~~---~~ndv~~yD~~t~~W~~l~~~~~~P~ 267 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLG--VRMVSIGSTLYVFGGRDASR---QYNGFYSFDTTTNEWKLLTPVEEGPT 267 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccc--eEEEEECCEEEEECCCCCCC---CCccEEEEECCCCEEEEcCcCCCCCC
Confidence 4689999999999976532 1221 1111 24788999999998654321 124688999999999998 3321110
Q ss_pred cCCCCeeEEEEeCCeEEEEEecCC-CCEEEEEEECC-CCceeEEEEec--cCCceeeeEEEeeCCEEEEEec-----CCe
Q 045559 248 EISPKHTVFGLYNDSLSFLVFDER-ESCFDIWTMKE-RYHWTKEFSTT--PILAVDAPIGFWKNDTFFIRSN-----TEE 318 (335)
Q Consensus 248 ~~~~~~~~l~~~~g~L~~~~~~~~-~~~~~IW~l~~-~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~-----~~~ 318 (335)
.+....++..+++|+++..... ...-++|.++. +.+|....... |.......+.+ -+++|++... ...
T Consensus 268 --~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~d 344 (470)
T PLN02193 268 --PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDD 344 (470)
T ss_pred --CccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCc
Confidence 0123356778999999987631 12234566665 68998753321 11111222222 3677776643 246
Q ss_pred EEEEeCCCCceeecc
Q 045559 319 LLLYDPNSEEIIDFQ 333 (335)
Q Consensus 319 l~~yd~~~~~~~~v~ 333 (335)
+..||+++++|+++.
T Consensus 345 v~~yD~~t~~W~~~~ 359 (470)
T PLN02193 345 VHYYDPVQDKWTQVE 359 (470)
T ss_pred eEEEECCCCEEEEec
Confidence 999999999999874
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.62 E-value=3.2e-06 Score=78.18 Aligned_cols=154 Identities=12% Similarity=0.023 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCcceecCccccc-ccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCcccc
Q 045559 171 RQVFIYSFSDNSWRNFQGFEFG-MYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLE 248 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p~~-~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~ 248 (335)
..+++|+.+++.|..++.+|.+ .... ..+.++|.||.+.................||.++.+|..+ ++|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~----a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGS----AVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcc----eEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 5799999999999998866653 3333 3788899999998643211001133556778899999988 66653321
Q ss_pred C-CC--CeeEEEEeCCeEEEEEecCCC--------------------CEEEEEEECCCCceeEEEEeccCCceeeeEEEe
Q 045559 249 I-SP--KHTVFGLYNDSLSFLVFDERE--------------------SCFDIWTMKERYHWTKEFSTTPILAVDAPIGFW 305 (335)
Q Consensus 249 ~-~~--~~~~l~~~~g~L~~~~~~~~~--------------------~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~ 305 (335)
. +. .....+.++|+|++++..... ..++++..+. ..|+..-.+ |.+.... .++.
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~-~~W~~~~~l-p~~r~~~-~av~ 341 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN-GKWQKVGEL-PQGLAYG-VSVS 341 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC-CcccccCcC-CCCccce-EEEE
Confidence 1 00 112246789999999875310 1245555554 889887666 5443222 2344
Q ss_pred eCCEEEEEecC-------CeEEEEeCCCCceee
Q 045559 306 KNDTFFIRSNT-------EELLLYDPNSEEIID 331 (335)
Q Consensus 306 ~~~~il~~~~~-------~~l~~yd~~~~~~~~ 331 (335)
-+++|++..+. ..+..|+++++++..
T Consensus 342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 342 WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 47888877641 368999999888764
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.55 E-value=4.2e-06 Score=75.75 Aligned_cols=149 Identities=7% Similarity=0.039 Sum_probs=96.1
Q ss_pred eEEEEEcCC--CcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccce----eee-cCCC
Q 045559 172 QVFIYSFSD--NSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVF----EEI-LGPN 244 (335)
Q Consensus 172 ~~~vyss~~--~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~----~~i-~~P~ 244 (335)
.+.+|+..+ ..|.....+|.+.... .++.+++.+|.+....... ....+..||+.+++| ..+ ++|.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~----~~~~~~~~lyviGG~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~ 112 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYG----ASVSVENGIYYIGGSNSSE---RFSSVYRITLDESKEELICETIGNLPF 112 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccce----EEEEECCEEEEEcCCCCCC---CceeEEEEEEcCCceeeeeeEcCCCCc
Confidence 445554222 2699887776654333 3788899999998654221 134788999999888 344 4443
Q ss_pred ccccCCCCeeEEEEeCCeEEEEEecC-CCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecC-----C
Q 045559 245 CLLEISPKHTVFGLYNDSLSFLVFDE-RESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNT-----E 317 (335)
Q Consensus 245 ~~~~~~~~~~~l~~~~g~L~~~~~~~-~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-----~ 317 (335)
.. .....+..+|+|+++.... ....-++|+++. ..+|++...+ |...-....++.-+++|++..+. .
T Consensus 113 ~~-----~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~~r~~~~~~~~~~~iYv~GG~~~~~~~ 186 (323)
T TIGR03548 113 TF-----ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF-PGEPRVQPVCVKLQNELYVFGGGSNIAYT 186 (323)
T ss_pred Cc-----cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCC-CCCCCCcceEEEECCEEEEEcCCCCcccc
Confidence 32 2345678899999998753 122335777776 6899987655 43222233333447788877542 2
Q ss_pred eEEEEeCCCCceeecc
Q 045559 318 ELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 318 ~l~~yd~~~~~~~~v~ 333 (335)
.+..||+++++|+++.
T Consensus 187 ~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 187 DGYKYSPKKNQWQKVA 202 (323)
T ss_pred ceEEEecCCCeeEECC
Confidence 4789999999999874
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.50 E-value=1.2e-05 Score=73.51 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=85.9
Q ss_pred ceEEEEEcCCCcceecCccccc-ccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCcccc
Q 045559 171 RQVFIYSFSDNSWRNFQGFEFG-MYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLE 248 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p~~-~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~ 248 (335)
..+++|+..+++|..++.+|.. .... ..+.++|.||.+.................+|.++++|+.+ ++|.....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGS----AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCc----eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 5799999999999999876643 3333 3678899999998653211000112334445577799988 66543211
Q ss_pred CC--CCeeEEEEeCCeEEEEEecCC--------------------CCEEEEEEECCCCceeEEEEeccCCceeeeEEEee
Q 045559 249 IS--PKHTVFGLYNDSLSFLVFDER--------------------ESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWK 306 (335)
Q Consensus 249 ~~--~~~~~l~~~~g~L~~~~~~~~--------------------~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~ 306 (335)
.+ ......+.++|+|++++.... ...+++|..+. ..|++...+ |.+.... .++.-
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~-~~W~~~~~l-p~~~~~~-~~~~~ 320 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN-GKWSKVGKL-PQGLAYG-VSVSW 320 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC-CcccccCCC-CCCceee-EEEEc
Confidence 00 012236778999999987520 02567787775 899988766 5543222 23334
Q ss_pred CCEEEEEec
Q 045559 307 NDTFFIRSN 315 (335)
Q Consensus 307 ~~~il~~~~ 315 (335)
+++|++..+
T Consensus 321 ~~~iyv~GG 329 (346)
T TIGR03547 321 NNGVLLIGG 329 (346)
T ss_pred CCEEEEEec
Confidence 788887765
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.49 E-value=6.9e-06 Score=73.31 Aligned_cols=216 Identities=11% Similarity=0.111 Sum_probs=126.9
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...+|++|--+.+|+.+-.+..+ ..++...+...|.. +-.+...+ +.............+++|++.+++|..
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P-----~pRsshq~va~~s~--~l~~fGGE-faSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAP-----PPRSSHQAVAVPSN--ILWLFGGE-FASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeeeEEeccccceeEeccCCCc-----CCCccceeEEeccC--eEEEeccc-cCCcchhhhhhhhheeeeeeccchhee
Confidence 45789999999999976544333 11223344444433 22222211 111111112334578999999999998
Q ss_pred cC--cccccccccCCCceeeeecceEEEEeec-CCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEe-CC
Q 045559 186 FQ--GFEFGMYDLDEVLDCTYHNGACHWLVPF-GAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLY-ND 261 (335)
Q Consensus 186 ~~--~~p~~~~~~~~~~~~v~~~G~~ywl~~~-~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~-~g 261 (335)
+. +.|.+...+. .|.....+.-++.. +.........-+.+||+.+=+|+.+..+.. ....+...++.+. +|
T Consensus 169 l~~~g~PS~RSGHR----MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~PtpRSGcq~~vtpqg 243 (521)
T KOG1230|consen 169 LEFGGGPSPRSGHR----MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GPTPRSGCQFSVTPQG 243 (521)
T ss_pred eccCCCCCCCccce----eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CCCCCCcceEEecCCC
Confidence 86 3344433332 44444444333322 211111112459999999999999966553 2222345566776 88
Q ss_pred eEEEEEecC----------CCCEEEEEEECC-C-----CceeEEEEec--cCCceeeeEEEeeCCE-EEEEe--c-----
Q 045559 262 SLSFLVFDE----------RESCFDIWTMKE-R-----YHWTKEFSTT--PILAVDAPIGFWKNDT-FFIRS--N----- 315 (335)
Q Consensus 262 ~L~~~~~~~----------~~~~~~IW~l~~-~-----~~W~~~~~i~--~~~~~~~~~~~~~~~~-il~~~--~----- 315 (335)
.+.+.+.+. +...-++|.|+. . -.|+++-.++ |-+.....++++++++ ++|-. +
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeee 323 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEE 323 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccc
Confidence 888887753 445678999998 2 3577765553 3344556678888877 44321 1
Q ss_pred -------CCeEEEEeCCCCceeeccc
Q 045559 316 -------TEELLLYDPNSEEIIDFQH 334 (335)
Q Consensus 316 -------~~~l~~yd~~~~~~~~v~~ 334 (335)
-+.|+.||+..|+|.+-|+
T Consensus 324 Esl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 324 ESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred hhhhhhhhhhhhheecccchhhHhhh
Confidence 2468999999999987665
No 24
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.30 E-value=2.1e-07 Score=58.47 Aligned_cols=36 Identities=28% Similarity=0.626 Sum_probs=31.0
Q ss_pred ChhhHhccCChhhhhhheeccccchhhhCChHhHHH
Q 045559 1 MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISK 36 (335)
Q Consensus 1 ll~eIL~rLP~k~l~r~r~VcK~W~~li~sp~F~~~ 36 (335)
++.+||+.||++++++++.|||+|+.++.++.+.+.
T Consensus 8 il~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 8 ILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp HHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 478999999999999999999999999998855544
No 25
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.27 E-value=3.8e-07 Score=57.60 Aligned_cols=38 Identities=39% Similarity=0.617 Sum_probs=32.9
Q ss_pred ChhhHhccCChhhhhhheeccccchhhhCChHhHHHHH
Q 045559 1 MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHL 38 (335)
Q Consensus 1 ll~eIL~rLP~k~l~r~r~VcK~W~~li~sp~F~~~~~ 38 (335)
++.+||.+||++++++++.|||+|++++.++.+...+.
T Consensus 10 il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 10 ILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 47899999999999999999999999999999887764
No 26
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.19 E-value=3.4e-07 Score=55.61 Aligned_cols=36 Identities=47% Similarity=0.750 Sum_probs=32.5
Q ss_pred ChhhHhccCChhhhhhheeccccchhhhCChHhHHH
Q 045559 1 MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISK 36 (335)
Q Consensus 1 ll~eIL~rLP~k~l~r~r~VcK~W~~li~sp~F~~~ 36 (335)
++.+||.+|++++++++++|||+|+.++.++.|.+.
T Consensus 5 ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 5 ILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 468999999999999999999999999999887653
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.62 E-value=0.0016 Score=55.29 Aligned_cols=187 Identities=9% Similarity=0.009 Sum_probs=108.1
Q ss_pred CceEEEEecchhhhhcC------CCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcC
Q 045559 106 GDEIALYNHATRDLKFL------PKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFS 179 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~L------P~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~ 179 (335)
...++-++|-|.+|.+. |..... .+++.+| +.-.|+...+ ++. ..-...++++++.
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDG-------HsAcV~g-----n~MyiFGGye---~~a---~~FS~d~h~ld~~ 165 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDG-------HSACVWG-----NQMYIFGGYE---EDA---QRFSQDTHVLDFA 165 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCC-------ceeeEEC-----cEEEEecChH---HHH---HhhhccceeEecc
Confidence 34678889999999863 333222 2244444 2233333322 100 1223567889999
Q ss_pred CCcceecCc---ccccccccCCCceeeeecceEEEEeecCCCC-C-----ccCceEEEEEECCccceeeecCCCccccCC
Q 045559 180 DNSWRNFQG---FEFGMYDLDEVLDCTYHNGACHWLVPFGAFH-P-----LCCHYVILSFDMSDEVFEEILGPNCLLEIS 250 (335)
Q Consensus 180 ~~~W~~~~~---~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~-~-----~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~ 250 (335)
|-.||.+.. +|.-...+ .++.++|.+|-+...+... + ......|+++|+.++.|...+.-+.....
T Consensus 166 TmtWr~~~Tkg~PprwRDFH----~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~G- 240 (392)
T KOG4693|consen 166 TMTWREMHTKGDPPRWRDFH----TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGG- 240 (392)
T ss_pred ceeeeehhccCCCchhhhhh----hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCc-
Confidence 999998862 22222223 3788889999998654311 0 11124799999999999865211111111
Q ss_pred CCeeEEEEeCCeEEEEEecC---CCCEEEEEEECC-CCceeEEEEeccCCce-eeeEEEeeCCEEEEEec
Q 045559 251 PKHTVFGLYNDSLSFLVFDE---RESCFDIWTMKE-RYHWTKEFSTTPILAV-DAPIGFWKNDTFFIRSN 315 (335)
Q Consensus 251 ~~~~~l~~~~g~L~~~~~~~---~~~~~~IW~l~~-~~~W~~~~~i~~~~~~-~~~~~~~~~~~il~~~~ 315 (335)
+..-...++||.+++++..- ...--++|..+. +..|.++..-+-.+.. -+-.++..++++++..+
T Consensus 241 RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 241 RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 23345788999999999874 334567899998 7889875433211111 22233334677766543
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.03 E-value=0.081 Score=50.60 Aligned_cols=205 Identities=7% Similarity=-0.011 Sum_probs=119.4
Q ss_pred eEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceecC
Q 045559 108 EIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQ 187 (335)
Q Consensus 108 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 187 (335)
.++|+|--++.|......... ...+.....+..+ ++-++...... . ......+++|+..|+.|+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~-p~~r~g~~~~~~~------~~l~lfGG~~~-~-----~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDE-PSPRYGHSLSAVG------DKLYLFGGTDK-K-----YRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCC-CCcccceeEEEEC------CeEEEEccccC-C-----CCChhheEeccCCCCcEEEec
Confidence 589999999887776543332 0011111122222 23222222211 0 122458899999999998775
Q ss_pred cc---cccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEE
Q 045559 188 GF---EFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLS 264 (335)
Q Consensus 188 ~~---p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~ 264 (335)
.. |.+...+ ..+.++-.+|.+...+... .....+-+||+++.+|..+......... +..-.++..+++++
T Consensus 156 ~~~~~P~~r~~H----s~~~~g~~l~vfGG~~~~~--~~~ndl~i~d~~~~~W~~~~~~g~~P~p-R~gH~~~~~~~~~~ 228 (482)
T KOG0379|consen 156 PTGDPPPPRAGH----SATVVGTKLVVFGGIGGTG--DSLNDLHIYDLETSTWSELDTQGEAPSP-RYGHAMVVVGNKLL 228 (482)
T ss_pred CcCCCCCCcccc----eEEEECCEEEEECCccCcc--cceeeeeeeccccccceecccCCCCCCC-CCCceEEEECCeEE
Confidence 32 3334444 3666777788887665321 1245799999999999998443322111 23345778888888
Q ss_pred EEEecC--CCCEEEEEEECC-CCceeEEEEec--cCCceeeeEEEeeCCEEEEEec--------CCeEEEEeCCCCceee
Q 045559 265 FLVFDE--RESCFDIWTMKE-RYHWTKEFSTT--PILAVDAPIGFWKNDTFFIRSN--------TEELLLYDPNSEEIID 331 (335)
Q Consensus 265 ~~~~~~--~~~~~~IW~l~~-~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~--------~~~l~~yd~~~~~~~~ 331 (335)
++.... +.--=++|.|+- +..|.++-... |.+.......+. ...+++... -..++.||.+++.|.+
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~ 307 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSK 307 (482)
T ss_pred EEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceee
Confidence 887753 233557899887 67787543221 333344444433 445555443 1247899999999987
Q ss_pred cc
Q 045559 332 FQ 333 (335)
Q Consensus 332 v~ 333 (335)
+.
T Consensus 308 ~~ 309 (482)
T KOG0379|consen 308 VE 309 (482)
T ss_pred ee
Confidence 75
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.99 E-value=0.016 Score=49.52 Aligned_cols=224 Identities=10% Similarity=0.022 Sum_probs=120.0
Q ss_pred cccceEEEeecCceEEEEecchhhhhcCCCCcccC-CcCCcee---eeeEEeecCCCCCeEEEEEEEEecCccccccCCC
Q 045559 95 PFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLID-NLESIYT---IMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDS 170 (335)
Q Consensus 95 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~---~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 170 (335)
-|.|-.-=..++-.+.|.|-.+-.|..+|+--..+ ....+.. .++|-....-. =|+......... ..-.
T Consensus 32 YCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~--d~~yvWGGRND~-----egaC 104 (392)
T KOG4693|consen 32 YCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ--DKAYVWGGRNDD-----EGAC 104 (392)
T ss_pred cccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc--ceEEEEcCccCc-----cccc
Confidence 44443332234567889999999999998743221 0000100 01111111100 112222111010 1123
Q ss_pred ceEEEEEcCCCcceecC---cccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeec---CCC
Q 045559 171 RQVFIYSFSDNSWRNFQ---GFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEIL---GPN 244 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~---~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~---~P~ 244 (335)
..++-|+.+++.|+..+ .+|-....+ .+.+.+..+|-+.....+- ..-...+-++|+.+.+|+.+. -|+
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaRDGH----sAcV~gn~MyiFGGye~~a-~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGARDGH----SACVWGNQMYIFGGYEEDA-QRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred ceeeeeccccccccccceeeecCCccCCc----eeeEECcEEEEecChHHHH-HhhhccceeEeccceeeeehhccCCCc
Confidence 46788999999998754 123223333 3788888888887543210 000235889999999999982 243
Q ss_pred ccccCCCCeeEEEEeCCeEEEEEecCCC----------CEEEEEEECC-CCceeEEEEec--cCCceeeeEEEeeCCEEE
Q 045559 245 CLLEISPKHTVFGLYNDSLSFLVFDERE----------SCFDIWTMKE-RYHWTKEFSTT--PILAVDAPIGFWKNDTFF 311 (335)
Q Consensus 245 ~~~~~~~~~~~l~~~~g~L~~~~~~~~~----------~~~~IW~l~~-~~~W~~~~~i~--~~~~~~~~~~~~~~~~il 311 (335)
.-.. .-.-.+++|..++++...++ -.-+|=.|+- ++.|.+...-. |...-.....+ -||+++
T Consensus 180 rwRD----FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y 254 (392)
T KOG4693|consen 180 RWRD----FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFV-YNGKMY 254 (392)
T ss_pred hhhh----hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEE-EcceEE
Confidence 2211 12345667888888775311 1233444554 68898742220 11111222222 278877
Q ss_pred EEec--------CCeEEEEeCCCCceeecccC
Q 045559 312 IRSN--------TEELLLYDPNSEEIIDFQHK 335 (335)
Q Consensus 312 ~~~~--------~~~l~~yd~~~~~~~~v~~~ 335 (335)
+..+ -+.|+.||++|..|..|..+
T Consensus 255 ~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 255 MFGGYNGTLNVHFNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred Eecccchhhhhhhcceeecccccchheeeecc
Confidence 6553 25699999999999998764
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.77 E-value=0.066 Score=51.22 Aligned_cols=154 Identities=7% Similarity=-0.010 Sum_probs=98.5
Q ss_pred eEEEEEcCCCcceecC---cccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCcccc
Q 045559 172 QVFIYSFSDNSWRNFQ---GFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLE 248 (335)
Q Consensus 172 ~~~vyss~~~~W~~~~---~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~ 248 (335)
.+++|+.++..|.... ..|.+...+. .+.++..+|.++...... .....+-+||+.+.+|..+..-.....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~----~~~~~~~l~lfGG~~~~~--~~~~~l~~~d~~t~~W~~l~~~~~~P~ 162 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHS----LSAVGDKLYLFGGTDKKY--RNLNELHSLDLSTRTWSLLSPTGDPPP 162 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccccee----EEEECCeEEEEccccCCC--CChhheEeccCCCCcEEEecCcCCCCC
Confidence 5889999998897543 2243344443 788889999998765311 012479999999999988732221000
Q ss_pred CCCCeeEEEEeCCeEEEEEecCCC--CEEEEEEECC-CCceeEEEEecc--CCceeeeEEEeeCCEEEEEe-cC------
Q 045559 249 ISPKHTVFGLYNDSLSFLVFDERE--SCFDIWTMKE-RYHWTKEFSTTP--ILAVDAPIGFWKNDTFFIRS-NT------ 316 (335)
Q Consensus 249 ~~~~~~~l~~~~g~L~~~~~~~~~--~~~~IW~l~~-~~~W~~~~~i~~--~~~~~~~~~~~~~~~il~~~-~~------ 316 (335)
.+..-.++..+.+|.+++..... ..-++|+++- ...|.+..+.++ .+.....+.+. ++++++.. .+
T Consensus 163 -~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l 240 (482)
T KOG0379|consen 163 -PRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYL 240 (482)
T ss_pred -CcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCcee
Confidence 01233466777889999887522 4678899888 677999877742 22233444444 44544433 22
Q ss_pred CeEEEEeCCCCceeecc
Q 045559 317 EELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 317 ~~l~~yd~~~~~~~~v~ 333 (335)
+.+..+|+.+.+|.++.
T Consensus 241 ~D~~~ldl~~~~W~~~~ 257 (482)
T KOG0379|consen 241 NDVHILDLSTWEWKLLP 257 (482)
T ss_pred cceEeeecccceeeecc
Confidence 35899999999998553
No 31
>smart00284 OLF Olfactomedin-like domains.
Probab=96.58 E-value=0.075 Score=45.83 Aligned_cols=119 Identities=12% Similarity=0.110 Sum_probs=75.8
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCcccc-------CCCCeeEEEEeCCeEEEEEecC-C
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLE-------ISPKHTVFGLYNDSLSFLVFDE-R 271 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~-------~~~~~~~l~~~~g~L~~~~~~~-~ 271 (335)
..|+.||.+|..... ...|+.||+.+++.... .+|..... .....+.|++-+..|.++.... .
T Consensus 78 G~VVYngslYY~~~~--------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 78 GVVVYNGSLYFNKFN--------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred cEEEECceEEEEecC--------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 489999999996543 34799999999999755 67753211 0234688898888899988775 4
Q ss_pred CCEEEEEEECC-----CCceeEEEEeccCCceeeeEEEeeCCEEEEEec----C-CeEEEEeCCCCceeec
Q 045559 272 ESCFDIWTMKE-----RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSN----T-EELLLYDPNSEEIIDF 332 (335)
Q Consensus 272 ~~~~~IW~l~~-----~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~----~-~~l~~yd~~~~~~~~v 332 (335)
.+.|.|=.|++ ...|.-. + +-+.....+-+ +|.++.... + ..-+.||+.|++-+.+
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T~--~-~k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~ 215 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWITT--Y-NKRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGKEGHL 215 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEcC--C-CcccccccEEE--eeEEEEEccCCCCCcEEEEEEECCCCcccee
Confidence 46788888887 4556542 2 22222222222 355554431 2 2357788777665544
No 32
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.50 E-value=0.098 Score=45.28 Aligned_cols=121 Identities=11% Similarity=0.114 Sum_probs=77.7
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCcccee-eecCCCccccC-------CCCeeEEEEeCCeEEEEEecCCC
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFE-EILGPNCLLEI-------SPKHTVFGLYNDSLSFLVFDERE 272 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~-------~~~~~~l~~~~g~L~~~~~~~~~ 272 (335)
..|+.||.+|.-... ...|+.||+.++... ...+|...... ....+.+++-+..|.++....+.
T Consensus 73 G~vVYngslYY~~~~--------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 73 GHVVYNGSLYYNKYN--------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred CeEEECCcEEEEecC--------CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 478999999998764 458999999999998 66888754321 23457888888889999887633
Q ss_pred -CEEEEEEECC-----CCceeEEEEeccCCceeeeEEEeeCCEEEEEecC----Ce-EEEEeCCCCceeeccc
Q 045559 273 -SCFDIWTMKE-----RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNT----EE-LLLYDPNSEEIIDFQH 334 (335)
Q Consensus 273 -~~~~IW~l~~-----~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~----~~-l~~yd~~~~~~~~v~~ 334 (335)
+.+.|=.|+. ...|.-. + +-+.+...+-+ +|.++..... .+ -+.||+.+++-+.+.|
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~--~-~k~~~~naFmv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS--Y-PKRSAGNAFMV--CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec--c-CchhhcceeeE--eeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 3688888887 4556532 2 22222222222 3555544321 22 3777777766655543
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.95 E-value=0.53 Score=42.99 Aligned_cols=149 Identities=10% Similarity=0.091 Sum_probs=88.5
Q ss_pred eEEEEEcCCCcceecCcc--cccccccCCCceeeeec-ceEEEEeecCCCCC--cc-CceEEEEEECCccceeeecCCCc
Q 045559 172 QVFIYSFSDNSWRNFQGF--EFGMYDLDEVLDCTYHN-GACHWLVPFGAFHP--LC-CHYVILSFDMSDEVFEEILGPNC 245 (335)
Q Consensus 172 ~~~vyss~~~~W~~~~~~--p~~~~~~~~~~~~v~~~-G~~ywl~~~~~~~~--~~-~~~~i~~fD~~~e~~~~i~~P~~ 245 (335)
.+.+|+.+++.|+.+..+ |.+...++ +|.+- |.+|.++..-.... .- +.--+-.||+.+.+|..+.++..
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq----~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQ----AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccce----eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 568899999999988633 33334443 55555 64444443321100 00 01248899999999999988765
Q ss_pred cccCCCCeeEEEEeCCeEEEEEecCCCCE-----EEEEEECC-CCceeEEEEec--cCCceeeeEEEeeCCEEEEEec--
Q 045559 246 LLEISPKHTVFGLYNDSLSFLVFDERESC-----FDIWTMKE-RYHWTKEFSTT--PILAVDAPIGFWKNDTFFIRSN-- 315 (335)
Q Consensus 246 ~~~~~~~~~~l~~~~g~L~~~~~~~~~~~-----~~IW~l~~-~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~-- 315 (335)
... +..-.++....+|.+++...+.+. =++|+.+- ...|.+.-.-+ |-+.-..-+.+.++|.|++..+
T Consensus 175 PS~--RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 175 PSP--RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCC--CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchh
Confidence 433 233357888888999987652221 13444443 58998865321 2222233455566788877653
Q ss_pred -------------CCeEEEEeCCC
Q 045559 316 -------------TEELLLYDPNS 326 (335)
Q Consensus 316 -------------~~~l~~yd~~~ 326 (335)
...++..++++
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCc
Confidence 12478888877
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.0038 Score=54.37 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=30.8
Q ss_pred ChhhHhccCChhhhhhheeccccchhhhCChHhHH
Q 045559 1 MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFIS 35 (335)
Q Consensus 1 ll~eIL~rLP~k~l~r~r~VcK~W~~li~sp~F~~ 35 (335)
|++.||++||.|+|+++..|||+|+.+.++.+-..
T Consensus 105 ill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 105 ILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 47899999999999999999999999998766543
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.17 E-value=0.056 Score=33.92 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=32.1
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCC
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGP 243 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 243 (335)
..+.++|.||.++...... .....+..||+++++|+.+ ++|
T Consensus 6 s~v~~~~~iyv~GG~~~~~--~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSG--KYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCC--CccccEEEEcCCCCcEEECCCCC
Confidence 4899999999998775410 1145899999999999999 555
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.44 E-value=0.015 Score=51.22 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.7
Q ss_pred ChhhHhccCChhhhhhheeccccchhhhCChHhHHHHHhh
Q 045559 1 MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKA 40 (335)
Q Consensus 1 ll~eIL~rLP~k~l~r~r~VcK~W~~li~sp~F~~~~~~~ 40 (335)
+.+.||+.|...+|+.|..|||+|+.+++++-..++...+
T Consensus 86 i~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~ 125 (499)
T KOG0281|consen 86 IAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIER 125 (499)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3578999999999999999999999999998877665543
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.35 E-value=0.14 Score=31.44 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=32.2
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCC
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGP 243 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 243 (335)
..+.++|.||.++...... .....+..||+.+++|..+ ++|
T Consensus 6 ~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence 5899999999998765411 1246899999999999988 554
No 38
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.27 E-value=4.7 Score=37.67 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=67.4
Q ss_pred eeeecceEEEEeecCCCCCccCceEEEEEECCccc---eeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEE
Q 045559 202 CTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEV---FEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIW 278 (335)
Q Consensus 202 ~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~---~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW 278 (335)
....++.+|.++..+.. ...|++.|+.+.. |..+-.|..... .-..+...++.|.+.........+.|+
T Consensus 283 v~~~~~~~yi~Tn~~a~-----~~~l~~~~l~~~~~~~~~~~l~~~~~~~---~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAP-----NGRLVAVDLADPSPAEWWTVLIPEDEDV---SLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEEETTEEEEEE-TT-T-----T-EEEEEETTSTSGGGEEEEEE--SSSE---EEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EEccCCEEEEeeCCCCC-----CcEEEEecccccccccceeEEcCCCCce---eEEEEEEECCEEEEEEEECCccEEEEE
Confidence 33457788888875533 5789999998665 553322322110 223455567788887777544555555
Q ss_pred EECCCCceeEEEEeccCCceeeeEEEe--e-CCEEEEEec----CCeEEEEeCCCCceeecc
Q 045559 279 TMKERYHWTKEFSTTPILAVDAPIGFW--K-NDTFFIRSN----TEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 279 ~l~~~~~W~~~~~i~~~~~~~~~~~~~--~-~~~il~~~~----~~~l~~yd~~~~~~~~v~ 333 (335)
-++ ..|... .+ ++.......++. . .+++++... ...++.||+++++.+.+.
T Consensus 355 ~~~--~~~~~~-~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 355 DLD--DGKESR-EI-PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ETT---TEEEE-EE-ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ECC--CCcEEe-ee-cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 555 134333 34 343333333333 2 345666543 357999999999998764
No 39
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.13 E-value=1.7 Score=39.63 Aligned_cols=145 Identities=15% Similarity=0.088 Sum_probs=79.5
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEE--------
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYS-------- 177 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vys-------- 177 (335)
.....|+++.|+....+|.+... . ... +.+.. .++ ++.+.......... ......+|+++
T Consensus 85 ~~~t~vyDt~t~av~~~P~l~~p-k---~~p--isv~V---G~~--LY~m~~~~~~~~~~-~~~~~~FE~l~~~~~~~~~ 152 (342)
T PF07893_consen 85 SGRTLVYDTDTRAVATGPRLHSP-K---RCP--ISVSV---GDK--LYAMDRSPFPEPAG-RPDFPCFEALVYRPPPDDP 152 (342)
T ss_pred CCCeEEEECCCCeEeccCCCCCC-C---cce--EEEEe---CCe--EEEeeccCcccccc-CccceeEEEeccccccccc
Confidence 56689999999999999986654 1 111 12221 223 44443211110000 00011555552
Q ss_pred --cCCCcceecCcccccccccC----CCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee---cCCCcccc
Q 045559 178 --FSDNSWRNFQGFEFGMYDLD----EVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI---LGPNCLLE 248 (335)
Q Consensus 178 --s~~~~W~~~~~~p~~~~~~~----~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i---~~P~~~~~ 248 (335)
.++.+|+.++.+|+...... ...++|. +|.--|+...+. ...-.+||+++.+|+.. .||.....
T Consensus 153 ~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~------~~GTysfDt~~~~W~~~GdW~LPF~G~a 225 (342)
T PF07893_consen 153 SPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR------RWGTYSFDTESHEWRKHGDWMLPFHGQA 225 (342)
T ss_pred cCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC------ceEEEEEEcCCcceeeccceecCcCCcc
Confidence 23467888876665421100 1135666 898888866532 12689999999999988 88875332
Q ss_pred --CCCCeeEEEEe--C--CeEEEEEec
Q 045559 249 --ISPKHTVFGLY--N--DSLSFLVFD 269 (335)
Q Consensus 249 --~~~~~~~l~~~--~--g~L~~~~~~ 269 (335)
......+++-+ + +.||.+...
T Consensus 226 ~y~~el~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 226 EYVPELDLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred EECCCcCeEEEeccCCCCcEEEEEecc
Confidence 11234444443 3 357666554
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.94 E-value=0.18 Score=31.43 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=31.1
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecC
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILG 242 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~ 242 (335)
..+.++|.||.+...+..........+-.||+++.+|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 488999999999877211111224579999999999998844
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.22 E-value=1.2 Score=40.08 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=57.8
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECC--ccceeee-cCCCccccCCCCeeEEEEeCCeEEEEEecCCC-----
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMS--DEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSFLVFDERE----- 272 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~--~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~----- 272 (335)
.+...+..+|.-..+... .-...|++ ...|+.+ ..|.... ....-+.++|+|+++......
T Consensus 41 ~Ga~ig~~~YVGLGs~G~-------afy~ldL~~~~k~W~~~a~FpG~~r----nqa~~a~~~~kLyvFgG~Gk~~~~~~ 109 (381)
T COG3055 41 AGALIGDTVYVGLGSAGT-------AFYVLDLKKPGKGWTKIADFPGGAR----NQAVAAVIGGKLYVFGGYGKSVSSSP 109 (381)
T ss_pred ccceecceEEEEeccCCc-------cceehhhhcCCCCceEcccCCCccc----ccchheeeCCeEEEeeccccCCCCCc
Confidence 477777789986665422 34455554 5689999 6676542 355678899999999887411
Q ss_pred -CEEEEEEECC-CCceeEEEEecc
Q 045559 273 -SCFDIWTMKE-RYHWTKEFSTTP 294 (335)
Q Consensus 273 -~~~~IW~l~~-~~~W~~~~~i~~ 294 (335)
..-+++.++. ..+|+++.+.-|
T Consensus 110 ~~~nd~Y~y~p~~nsW~kl~t~sP 133 (381)
T COG3055 110 QVFNDAYRYDPSTNSWHKLDTRSP 133 (381)
T ss_pred eEeeeeEEecCCCChhheeccccc
Confidence 2356788888 899999988833
No 42
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.12 E-value=2.9 Score=35.54 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=66.8
Q ss_pred eecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCcccc-CCCCeeEEEEe--CCe--E-EEEEec--CCCCEE
Q 045559 204 YHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLE-ISPKHTVFGLY--NDS--L-SFLVFD--ERESCF 275 (335)
Q Consensus 204 ~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~-~~~~~~~l~~~--~g~--L-~~~~~~--~~~~~~ 275 (335)
.|||.+ .+... ..+...|+.+.++..++.|+.... .......++-. .+. + .+.... .....+
T Consensus 3 sCnGLl-c~~~~---------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~ 72 (230)
T TIGR01640 3 PCDGLI-CFSYG---------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEH 72 (230)
T ss_pred ccceEE-EEecC---------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccE
Confidence 578888 44432 268899999999999976653211 10011223221 122 2 332221 123578
Q ss_pred EEEEECCCCceeEEEEeccCCce-eeeEEEeeCCEEEEEe-cC-----CeEEEEeCCCCceee-cc
Q 045559 276 DIWTMKERYHWTKEFSTTPILAV-DAPIGFWKNDTFFIRS-NT-----EELLLYDPNSEEIID-FQ 333 (335)
Q Consensus 276 ~IW~l~~~~~W~~~~~i~~~~~~-~~~~~~~~~~~il~~~-~~-----~~l~~yd~~~~~~~~-v~ 333 (335)
+|+.+.. ++|...... +.... ... ++.-+|.++... .. ..++.||++++++.+ +.
T Consensus 73 ~Vys~~~-~~Wr~~~~~-~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~ 135 (230)
T TIGR01640 73 QVYTLGS-NSWRTIECS-PPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP 135 (230)
T ss_pred EEEEeCC-CCccccccC-CCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee
Confidence 8888886 899886532 22111 222 444588875433 21 169999999999995 53
No 43
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.06 E-value=6.9 Score=35.67 Aligned_cols=150 Identities=11% Similarity=0.201 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCc--ceecCcccccccccCCCceeee-ecce-EEEEeecCCCCCccCceEEEEEECC--ccceeee---
Q 045559 170 SRQVFIYSFSDNS--WRNFQGFEFGMYDLDEVLDCTY-HNGA-CHWLVPFGAFHPLCCHYVILSFDMS--DEVFEEI--- 240 (335)
Q Consensus 170 ~~~~~vyss~~~~--W~~~~~~p~~~~~~~~~~~~v~-~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~--~e~~~~i--- 240 (335)
...+.+|+..++. .........+....| +..++ -+|. +|...... ..|.+|++. +..+..+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP--Rh~~f~pdg~~~Yv~~e~s--------~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGP--RHLAFSPDGKYAYVVNELS--------NTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSE--EEEEE-TTSSEEEEEETTT--------TEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCC--cEEEEcCCcCEEEEecCCC--------CcEEEEeecccCCceeEEEEe
Confidence 4578888887654 544222222222222 11222 2554 66665543 245555554 5566554
Q ss_pred -cCCCccccCCCCeeEEEEe-CCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccC-CceeeeEEEeeCCEEEEEe-
Q 045559 241 -LGPNCLLEISPKHTVFGLY-NDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPI-LAVDAPIGFWKNDTFFIRS- 314 (335)
Q Consensus 241 -~~P~~~~~~~~~~~~l~~~-~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~-~~~~~~~~~~~~~~il~~~- 314 (335)
.+|...... ..-..+... +|+ |++.... .+.|.++.++. .+.-..+..+ +. ....+-+.+.++|+.++..
T Consensus 235 ~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 235 STLPEGFTGE-NAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp ESCETTSCSS-SSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEE
T ss_pred eecccccccc-CCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEe
Confidence 344422211 123344444 666 6666665 78999999966 4555555566 43 2335666667788866544
Q ss_pred -cCCeEEEE--eCCCCceeecc
Q 045559 315 -NTEELLLY--DPNSEEIIDFQ 333 (335)
Q Consensus 315 -~~~~l~~y--d~~~~~~~~v~ 333 (335)
+.+.|.+| |.++++++.+.
T Consensus 311 ~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEEEEeCCCCcEEEec
Confidence 35566666 67888887653
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.83 E-value=6.1 Score=34.48 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=119.4
Q ss_pred cccceEEEeec-CceEEEEecchhhhhcCCCCcccCCcCCce---------ee--eeEEeecCCCCCeEEEEEEEEecCc
Q 045559 95 PFEGLFIMFIG-GDEIALYNHATRDLKFLPKLTLIDNLESIY---------TI--MFGLGLDPKCNYYKLVYIVTYHDSE 162 (335)
Q Consensus 95 s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~---------~~--~~~l~~d~~~~~ykVv~~~~~~~~~ 162 (335)
+-+|-|-+... ...+==.||.|++-...|...-. ++.+.. .+ ....-+|+.+.+++-+-+.-
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga-~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~----- 143 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA-SPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL----- 143 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCC-CCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc-----
Confidence 56787777653 55666789999999988876544 333211 11 11222344443333332221
Q ss_pred cccccCCCceEEEEEcCCCcceecCc-----c-c---------ccccccCCCceeeeecceEEEEeecCCCCCccCceEE
Q 045559 163 LGKVLNDSRQVFIYSFSDNSWRNFQG-----F-E---------FGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVI 227 (335)
Q Consensus 163 ~~~~~~~~~~~~vyss~~~~W~~~~~-----~-p---------~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i 227 (335)
.....+..--||+-..+-|-+-+. + | .+....+ ...++.-||.+|+-...+ ..|
T Consensus 144 --~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gp-yGi~atpdGsvwyaslag--------nai 212 (353)
T COG4257 144 --EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGP-YGICATPDGSVWYASLAG--------NAI 212 (353)
T ss_pred --ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCC-cceEECCCCcEEEEeccc--------cce
Confidence 113456777889888888954321 0 1 1111111 113466678888765543 379
Q ss_pred EEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECC-CCceeEEEEeccCC-ceeeeEEEe
Q 045559 228 LSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPIL-AVDAPIGFW 305 (335)
Q Consensus 228 ~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~-~~~~~~~~~ 305 (335)
...|..+..-.+++.|...... .+.--...-|++.+-.. ..=.+.+.+. ..+| ..+.+ |-. .-..-+.|.
T Consensus 213 aridp~~~~aev~p~P~~~~~g--sRriwsdpig~~wittw----g~g~l~rfdPs~~sW-~eypL-Pgs~arpys~rVD 284 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAG--SRRIWSDPIGRAWITTW----GTGSLHRFDPSVTSW-IEYPL-PGSKARPYSMRVD 284 (353)
T ss_pred EEcccccCCcceecCCCccccc--ccccccCccCcEEEecc----CCceeeEeCcccccc-eeeeC-CCCCCCcceeeec
Confidence 9999999988888888763321 11111222333333311 1122333444 5667 44555 422 224455666
Q ss_pred eCCEEEE-EecCCeEEEEeCCCCceeeccc
Q 045559 306 KNDTFFI-RSNTEELLLYDPNSEEIIDFQH 334 (335)
Q Consensus 306 ~~~~il~-~~~~~~l~~yd~~~~~~~~v~~ 334 (335)
..|.+.+ ....+.+..+|++|.+++++-+
T Consensus 285 ~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 285 RHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred cCCcEEeeccccCceeecCcccceEEEecC
Confidence 5677777 4457789999999999987643
No 45
>PF13964 Kelch_6: Kelch motif
Probab=92.55 E-value=0.32 Score=30.35 Aligned_cols=29 Identities=10% Similarity=0.306 Sum_probs=22.6
Q ss_pred eeCCEEEEEec-------CCeEEEEeCCCCceeecc
Q 045559 305 WKNDTFFIRSN-------TEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 305 ~~~~~il~~~~-------~~~l~~yd~~~~~~~~v~ 333 (335)
.-+++|++..+ .+.+..||++|++|+.+.
T Consensus 9 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 9 VVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 34778887754 256999999999999874
No 46
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.05 E-value=7.1 Score=33.44 Aligned_cols=203 Identities=7% Similarity=-0.036 Sum_probs=103.2
Q ss_pred cceEEEee-cCceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEE
Q 045559 97 EGLFIMFI-GGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFI 175 (335)
Q Consensus 97 ~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~v 175 (335)
+|-|.+.. ...+++.++|.+++...+..+. ..++.++...+.+.| .. .....+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-----------~~G~~~~~~~g~l~v-~~--------------~~~~~~ 64 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-----------PNGMAFDRPDGRLYV-AD--------------SGGIAV 64 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-----------EEEEEEECTTSEEEE-EE--------------TTCEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-----------CceEEEEccCCEEEE-EE--------------cCceEE
Confidence 56565555 4778999999998876544333 245666632233321 11 123466
Q ss_pred EEcCCCcceecCcccccc-cccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCee
Q 045559 176 YSFSDNSWRNFQGFEFGM-YDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHT 254 (335)
Q Consensus 176 yss~~~~W~~~~~~p~~~-~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~ 254 (335)
++..++.++.+...+... .....+.-.+--+|.+|+-..............|..+|.. .+...+.-. .. ...
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~----~pN 137 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LG----FPN 137 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ES----SEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cc----ccc
Confidence 688888887765432110 0000012356667887765543221000001679999999 444333110 10 111
Q ss_pred EEEEe-CCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCc---eeeeEEEeeCCEEEEEe-cCCeEEEEeCCCC
Q 045559 255 VFGLY-NDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILA---VDAPIGFWKNDTFFIRS-NTEELLLYDPNSE 327 (335)
Q Consensus 255 ~l~~~-~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~---~~~~~~~~~~~~il~~~-~~~~l~~yd~~~~ 327 (335)
-|+.. +|+ |++.... ...+..+-++. ...+.....+-.++. ...-+++..+|.|++.. ...++..||++.+
T Consensus 138 Gi~~s~dg~~lyv~ds~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEEETTSSEEEEEETT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred ceEECCcchheeecccc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence 23333 454 6665554 44444444433 333544333312222 23334555678887764 4678999999977
Q ss_pred ceeeccc
Q 045559 328 EIIDFQH 334 (335)
Q Consensus 328 ~~~~v~~ 334 (335)
.+.+|.+
T Consensus 216 ~~~~i~~ 222 (246)
T PF08450_consen 216 LLREIEL 222 (246)
T ss_dssp EEEEEE-
T ss_pred EEEEEcC
Confidence 7777654
No 47
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.49 E-value=3.5 Score=37.17 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=65.1
Q ss_pred ceEEEEeecCCCCCccCceEEEEEECCccceeee-cCC--Cccc---cCCCCeeEEEEe---CCeEEEEEecC-----CC
Q 045559 207 GACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGP--NCLL---EISPKHTVFGLY---NDSLSFLVFDE-----RE 272 (335)
Q Consensus 207 G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P--~~~~---~~~~~~~~l~~~---~g~L~~~~~~~-----~~ 272 (335)
|.+||++..+ .|...|+..+.-... +.+ ...+ .+.....++..+ .|+|+++-... ..
T Consensus 196 ~~~~F~Sy~G---------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 196 GRLYFVSYEG---------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp TEEEEEBTTS---------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred CeEEEEecCC---------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 5788877754 678888776654333 111 1111 111112233333 56788776532 34
Q ss_pred CEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEE-e-cCCeEEEEeCCCCcee
Q 045559 273 SCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIR-S-NTEELLLYDPNSEEII 330 (335)
Q Consensus 273 ~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~-~-~~~~l~~yd~~~~~~~ 330 (335)
..-+||+++- ..=.++.+| ++..-...+.+..+++ .|+. . .+..|.+||..|++..
T Consensus 267 pgteVWv~D~-~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 267 PGTEVWVYDL-KTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp -EEEEEEEET-TTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CceEEEEEEC-CCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 5789999998 332567788 6665455677887766 6653 3 3567999999998764
No 48
>smart00612 Kelch Kelch domain.
Probab=90.90 E-value=0.28 Score=29.74 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecc
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNG 207 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G 207 (335)
...+++|+.+++.|+..+.+|.+..... .+.++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~----~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHG----VAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccce----EEEeCC
Confidence 4578999999999999886665544332 455543
No 49
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.22 E-value=6.1 Score=35.98 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=67.4
Q ss_pred cceEEEEeecCCCCCccCceEEEEEECCccc--eee---ecCCCccccCCCCeeEEEEeCCe-EEEEEecCCCCEEEEEE
Q 045559 206 NGACHWLVPFGAFHPLCCHYVILSFDMSDEV--FEE---ILGPNCLLEISPKHTVFGLYNDS-LSFLVFDERESCFDIWT 279 (335)
Q Consensus 206 ~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~--~~~---i~~P~~~~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~ 279 (335)
+|..-|...-+.+ .|..|++..+. ... +.+|...+. .+..+ .-+|+ +++++.. .+.+.++.
T Consensus 154 dg~~v~v~dlG~D-------~v~~~~~~~~~~~l~~~~~~~~~~G~GP---Rh~~f-~pdg~~~Yv~~e~--s~~v~v~~ 220 (345)
T PF10282_consen 154 DGRFVYVPDLGAD-------RVYVYDIDDDTGKLTPVDSIKVPPGSGP---RHLAF-SPDGKYAYVVNEL--SNTVSVFD 220 (345)
T ss_dssp TSSEEEEEETTTT-------EEEEEEE-TTS-TEEEEEEEECSTTSSE---EEEEE--TTSSEEEEEETT--TTEEEEEE
T ss_pred CCCEEEEEecCCC-------EEEEEEEeCCCceEEEeeccccccCCCC---cEEEE-cCCcCEEEEecCC--CCcEEEEe
Confidence 4666666665533 56677765554 433 356665432 22322 22555 6666554 78999999
Q ss_pred ECC-CCceeEEEEeccCCc------eeeeEEEeeCCEEEEEe--cCCeEEEEeC--CCCceeecc
Q 045559 280 MKE-RYHWTKEFSTTPILA------VDAPIGFWKNDTFFIRS--NTEELLLYDP--NSEEIIDFQ 333 (335)
Q Consensus 280 l~~-~~~W~~~~~i~~~~~------~~~~~~~~~~~~il~~~--~~~~l~~yd~--~~~~~~~v~ 333 (335)
++. ...+....++..++. ...-+.+++||++++.. ..+.|..|++ ++++++.++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 994 567777777732211 23445567789866554 3567888887 556777654
No 50
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.85 E-value=13 Score=32.45 Aligned_cols=138 Identities=7% Similarity=-0.023 Sum_probs=75.0
Q ss_pred CCCceEEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccce-eeecCCCcc
Q 045559 168 NDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVF-EEILGPNCL 246 (335)
Q Consensus 168 ~~~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~ 246 (335)
-....+..|++.+++=.....+|-..+ . +..+.+|+.+|-+++. ....+.||..+-+- ..++.|.
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~~~F--g--EGit~~~d~l~qLTWk--------~~~~f~yd~~tl~~~~~~~y~~-- 130 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPPRYF--G--EGITILGDKLYQLTWK--------EGTGFVYDPNTLKKIGTFPYPG-- 130 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TTT----E--EEEEEETTEEEEEESS--------SSEEEEEETTTTEEEEEEE-SS--
T ss_pred CCcEEEEEEECCCCcEEEEEECCcccc--c--eeEEEECCEEEEEEec--------CCeEEEEccccceEEEEEecCC--
Confidence 345678889998886333222332222 2 3478889999999997 45789999875322 2224442
Q ss_pred ccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEe-----eCCEEEEEec-CCeEE
Q 045559 247 LEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFW-----KNDTFFIRSN-TEELL 320 (335)
Q Consensus 247 ~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~-----~~~~il~~~~-~~~l~ 320 (335)
+ ..-|+..+..|.+...+ -.|+.++. .....+.+| ....-..|+... -+|.|+-.-. ...++
T Consensus 131 E-----GWGLt~dg~~Li~SDGS-----~~L~~~dP-~~f~~~~~i-~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 131 E-----GWGLTSDGKRLIMSDGS-----SRLYFLDP-ETFKEVRTI-QVTDNGRPVSNLNELEYINGKIYANVWQTDRIV 198 (264)
T ss_dssp S-------EEEECSSCEEEE-SS-----SEEEEE-T-TT-SEEEEE-E-EETTEE---EEEEEEETTEEEEEETTSSEEE
T ss_pred c-----ceEEEcCCCEEEEECCc-----cceEEECC-cccceEEEE-EEEECCEECCCcEeEEEEcCEEEEEeCCCCeEE
Confidence 2 33456445556666553 23667775 555566666 333222222211 1677776543 56788
Q ss_pred EEeCCCCceee
Q 045559 321 LYDPNSEEIID 331 (335)
Q Consensus 321 ~yd~~~~~~~~ 331 (335)
.-||+|++...
T Consensus 199 ~Idp~tG~V~~ 209 (264)
T PF05096_consen 199 RIDPETGKVVG 209 (264)
T ss_dssp EEETTT-BEEE
T ss_pred EEeCCCCeEEE
Confidence 88888887764
No 51
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.29 E-value=9.5 Score=35.53 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=61.1
Q ss_pred ceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEE
Q 045559 224 HYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIG 303 (335)
Q Consensus 224 ~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~ 303 (335)
..++.+||+++.+.+.+..|...+........+.-++.-|++.+. .+.|.+-..+ +.+|..-++| .....-+.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLhak-T~eli~s~Ki---eG~v~~~~ 351 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHAK-TKELITSFKI---EGVVSDFT 351 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehhh-hhhhhheeee---ccEEeeEE
Confidence 568999999999999998888766321122222222222444443 3444444444 4778776666 23344455
Q ss_pred EeeCCEEE-EEecCCeEEEEeCCCCce
Q 045559 304 FWKNDTFF-IRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 304 ~~~~~~il-~~~~~~~l~~yd~~~~~~ 329 (335)
+..+++.+ +...++.|+++|++++..
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcce
Confidence 56677754 555677899999998854
No 52
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=89.11 E-value=7.2 Score=33.42 Aligned_cols=137 Identities=8% Similarity=0.088 Sum_probs=79.9
Q ss_pred CcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCcc-ceeeecCCCccccC-------CCC
Q 045559 181 NSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDE-VFEEILGPNCLLEI-------SPK 252 (335)
Q Consensus 181 ~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e-~~~~i~~P~~~~~~-------~~~ 252 (335)
+.|...-.+|.+.... ..|+.||.+|..... ...|+.||++++ +.....+|...... ...
T Consensus 56 ~~~~~~~~lp~~~~gT----g~VVynGs~yynk~~--------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~s 123 (249)
T KOG3545|consen 56 GRKAEKYRLPYSWDGT----GHVVYNGSLYYNKAG--------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHS 123 (249)
T ss_pred cCcceEEeCCCCcccc----ceEEEcceEEeeccC--------CcceEEEEeecceeeeeeeccccccCCCcccccCCCc
Confidence 4454443445443333 489999999998754 457999999985 33444666543221 124
Q ss_pred eeEEEEeCCeEEEEEecC-CCCEEEEEEECC-----CCceeEEEEeccCCceeeeEEEeeCCEEEEEec----CCeE-EE
Q 045559 253 HTVFGLYNDSLSFLVFDE-RESCFDIWTMKE-----RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSN----TEEL-LL 321 (335)
Q Consensus 253 ~~~l~~~~g~L~~~~~~~-~~~~~~IW~l~~-----~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~----~~~l-~~ 321 (335)
.+.+++....|.++.... ..+.+.|=.|+. ...|.-. + +......-+ .-+|-++..+. ...+ +.
T Consensus 124 diD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~-~k~~~~~aF--~iCGvLY~v~S~~~~~~~i~ya 198 (249)
T KOG3545|consen 124 DIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--L-PKRSAGNAF--MICGVLYVVHSYNCTHTQISYA 198 (249)
T ss_pred cccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--c-CCCCcCceE--EEeeeeEEEeccccCCceEEEE
Confidence 567777777788777764 455666677776 4567432 1 222221211 12355554432 2233 68
Q ss_pred EeCCCCceeeccc
Q 045559 322 YDPNSEEIIDFQH 334 (335)
Q Consensus 322 yd~~~~~~~~v~~ 334 (335)
||..+++-+.+.|
T Consensus 199 ydt~~~~~~~~~i 211 (249)
T KOG3545|consen 199 YDTTTGTQERIDL 211 (249)
T ss_pred EEcCCCceecccc
Confidence 8888887766654
No 53
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.09 E-value=14 Score=33.72 Aligned_cols=119 Identities=11% Similarity=0.121 Sum_probs=70.7
Q ss_pred eeecceEEEEeecCCCCCccCceEEEEEECCcc------ceeeecCCCccccCCCCeeE-EEEe--CCeEEEEEecC---
Q 045559 203 TYHNGACHWLVPFGAFHPLCCHYVILSFDMSDE------VFEEILGPNCLLEISPKHTV-FGLY--NDSLSFLVFDE--- 270 (335)
Q Consensus 203 v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e------~~~~i~~P~~~~~~~~~~~~-l~~~--~g~L~~~~~~~--- 270 (335)
.-.+|..+|.+..+ .|..+|+... .|..+..-...+.......+ ++.. +++|+++....
T Consensus 202 ~~~dg~~~~vs~eG---------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 202 SNKSGRLVWPTYTG---------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred EcCCCcEEEEecCC---------eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 33378889988764 5777775432 33333111100111111211 3332 34577743221
Q ss_pred --CCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEEec--CCeEEEEeCCCCce-eec
Q 045559 271 --RESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN--TEELLLYDPNSEEI-IDF 332 (335)
Q Consensus 271 --~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~--~~~l~~yd~~~~~~-~~v 332 (335)
....=+||++|- ..+..+.+| +...-...+.+.+||+ .++..+ .+.|.++|..+.+. +.|
T Consensus 273 thk~~~~~V~ViD~-~t~kvi~~i-~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 273 THKTASRFLFVVDA-KTGKRLRKI-ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cccCCCCEEEEEEC-CCCeEEEEE-eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 112237899996 888899999 7777677788899988 766554 56799999988744 544
No 54
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=88.76 E-value=1.4 Score=27.29 Aligned_cols=30 Identities=3% Similarity=0.284 Sum_probs=22.7
Q ss_pred eeCCEEEEEecC---------CeEEEEeCCCCceeeccc
Q 045559 305 WKNDTFFIRSNT---------EELLLYDPNSEEIIDFQH 334 (335)
Q Consensus 305 ~~~~~il~~~~~---------~~l~~yd~~~~~~~~v~~ 334 (335)
..+++|++..+. ..+..||+++++|+++.-
T Consensus 9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 347787766432 468999999999999863
No 55
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=88.31 E-value=1.3 Score=27.27 Aligned_cols=29 Identities=7% Similarity=0.320 Sum_probs=17.6
Q ss_pred eeCCEEEEEec-------CCeEEEEeCCCCceeecc
Q 045559 305 WKNDTFFIRSN-------TEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 305 ~~~~~il~~~~-------~~~l~~yd~~~~~~~~v~ 333 (335)
.+++.+++..+ -+.++.||+++++|+++.
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 34567766543 236899999999999874
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.75 E-value=15 Score=34.06 Aligned_cols=108 Identities=6% Similarity=-0.018 Sum_probs=61.8
Q ss_pred eeeecceEEEEeecCCCCCccCceEEEEEECCcc--ceeeecCCCccccCC-----CCeeEEEEeCCeEEEEEecCCCCE
Q 045559 202 CTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDE--VFEEILGPNCLLEIS-----PKHTVFGLYNDSLSFLVFDERESC 274 (335)
Q Consensus 202 ~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~~~~~-----~~~~~l~~~~g~L~~~~~~~~~~~ 274 (335)
+++.+|.+|..... ..+.++|.++. .|+. +++....... ......+..+|.+++.... ..
T Consensus 65 Pvv~~~~vy~~~~~---------g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~---g~ 131 (394)
T PRK11138 65 PAVAYNKVYAADRA---------GLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK---GQ 131 (394)
T ss_pred cEEECCEEEEECCC---------CeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC---CE
Confidence 78899999987754 37999998644 5542 3332111000 0112345667777664432 22
Q ss_pred EEEEEECC---CCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeCCCCce
Q 045559 275 FDIWTMKE---RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 275 ~~IW~l~~---~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~ 329 (335)
+..++. +..|... + +-.....|+.. ++.+++...+..|+.+|+++++.
T Consensus 132 --l~ald~~tG~~~W~~~--~-~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 132 --VYALNAEDGEVAWQTK--V-AGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred --EEEEECCCCCCccccc--C-CCceecCCEEE--CCEEEEECCCCEEEEEEccCCCE
Confidence 445543 6678663 2 21222344442 56677776677899999988764
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.54 E-value=16 Score=30.74 Aligned_cols=190 Identities=9% Similarity=0.062 Sum_probs=93.4
Q ss_pred ccceEEEeecCceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEE
Q 045559 96 FEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFI 175 (335)
Q Consensus 96 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~v 175 (335)
.+|.+.+......++.+|+.|++...--..+.. ... . +....=+|+.... .-.+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-----~~~--~-----~~~~~~~v~v~~~------------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-----ISG--A-----PVVDGGRVYVGTS------------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-----GGS--G-----EEEETTEEEEEET------------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-----ccc--e-----eeecccccccccc------------eeeeEe
Confidence 678887776688999999999886543332221 100 0 1111122222210 115666
Q ss_pred EEcCCC--cce-ecCccc-ccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccc--eeee-cCCCcccc
Q 045559 176 YSFSDN--SWR-NFQGFE-FGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEV--FEEI-LGPNCLLE 248 (335)
Q Consensus 176 yss~~~--~W~-~~~~~p-~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~--~~~i-~~P~~~~~ 248 (335)
++.+++ .|+ .....+ ....... .....++.+|..... ..|.++|+++.+ |..- ..|.....
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSS---SPAVDGDRLYVGTSS---------GKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--S---EEEEETTEEEEEETC---------SEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccCCcceeeeecccccccccccccc---CceEecCEEEEEecc---------CcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 665555 488 343212 1111111 234445666665543 379999987554 4332 33332110
Q ss_pred ---CCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeC
Q 045559 249 ---ISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDP 324 (335)
Q Consensus 249 ---~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~ 324 (335)
.......+...+|.+++.... ...+.+ -++. ...|.+. + ..... .....++.+++...+..++.+|+
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~---~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--I---SGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--S---S-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred eeeecccccceEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--C---CCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 000123444456766665554 233444 3343 2236321 2 22111 12233455666666789999999
Q ss_pred CCCcee
Q 045559 325 NSEEII 330 (335)
Q Consensus 325 ~~~~~~ 330 (335)
+|++..
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 998753
No 58
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=87.23 E-value=0.2 Score=44.04 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=31.9
Q ss_pred ChhhHhccC-----ChhhhhhheeccccchhhhCChHhHHHHHh
Q 045559 1 MVVEILSKF-----PVKSLLRFRCVCKSWYELFESPSFISKHLK 39 (335)
Q Consensus 1 ll~eIL~rL-----P~k~l~r~r~VcK~W~~li~sp~F~~~~~~ 39 (335)
+|++||.+. .+.+|-++.+|||.|+-...+|+|.+....
T Consensus 114 vLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 114 VLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred HHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 356666654 469999999999999999999999887554
No 59
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=86.32 E-value=1.1 Score=27.61 Aligned_cols=41 Identities=7% Similarity=0.008 Sum_probs=23.3
Q ss_pred eeeee-cceEEEEeecCCCCCccCceEEEEEECCccceeee-cCC
Q 045559 201 DCTYH-NGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGP 243 (335)
Q Consensus 201 ~~v~~-~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 243 (335)
.++.+ ++.+|.+....... .....+..||+++++|+.+ ++|
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCC
Confidence 35666 57888877554211 0023688999999999999 444
No 60
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=85.11 E-value=7.2 Score=29.92 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=50.1
Q ss_pred eEEEEEECCcc--ceeeecCCCccccC---------CCCeeEEEEeCCeEEEEEecC--------CCCEEEEEEECC---
Q 045559 225 YVILSFDMSDE--VFEEILGPNCLLEI---------SPKHTVFGLYNDSLSFLVFDE--------RESCFDIWTMKE--- 282 (335)
Q Consensus 225 ~~i~~fD~~~e--~~~~i~~P~~~~~~---------~~~~~~l~~~~g~L~~~~~~~--------~~~~~~IW~l~~--- 282 (335)
..|+.+|+-.+ .++-|++|...... ......++..+|+|-.+.... ....+.+|.|..
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 36888997655 55666888654221 123456888999987777653 244799999998
Q ss_pred -CCceeEEEEeccCCc
Q 045559 283 -RYHWTKEFSTTPILA 297 (335)
Q Consensus 283 -~~~W~~~~~i~~~~~ 297 (335)
...|.+.+++ ..+.
T Consensus 86 ~~~~W~~d~~v-~~~d 100 (131)
T PF07762_consen 86 SSWEWKKDCEV-DLSD 100 (131)
T ss_pred CCCCEEEeEEE-Ehhh
Confidence 5789999999 4544
No 61
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.04 E-value=23 Score=33.76 Aligned_cols=204 Identities=12% Similarity=0.083 Sum_probs=97.4
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCc--c
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNS--W 183 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~--W 183 (335)
-+++.|+|-+|+||- +|.-... ...-..++||......-.|+..+-.|. ...=+.|.++... |
T Consensus 56 iDELHvYNTatnqWf-~PavrGD-----iPpgcAA~GfvcdGtrilvFGGMvEYG---------kYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 56 IDELHVYNTATNQWF-APAVRGD-----IPPGCAAFGFVCDGTRILVFGGMVEYG---------KYSNDLYELQASRWEW 120 (830)
T ss_pred hhhhhhhccccceee-cchhcCC-----CCCchhhcceEecCceEEEEccEeeec---------cccchHHHhhhhhhhH
Confidence 357899999999986 4433332 111244555554444444444332222 2344667777654 5
Q ss_pred eecCc-------ccccccccCCCceeeeecceEEEEeecCCCC-----C---ccCceEEEEEECCcc--ceeee----cC
Q 045559 184 RNFQG-------FEFGMYDLDEVLDCTYHNGACHWLVPFGAFH-----P---LCCHYVILSFDMSDE--VFEEI----LG 242 (335)
Q Consensus 184 ~~~~~-------~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~-----~---~~~~~~i~~fD~~~e--~~~~i----~~ 242 (335)
+.+.. +|++...++ -+.+..+.|.+..-.++. . -....+|+-+-.... .|... .+
T Consensus 121 krlkp~~p~nG~pPCPRlGHS----Fsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~ 196 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGHS----FSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVL 196 (830)
T ss_pred hhcCCCCCCCCCCCCCccCce----eEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCC
Confidence 66541 233333332 455556788876443321 0 001124444433333 23221 33
Q ss_pred CCccccCCCCeeEEEE--eCC---eEEEEEecCCCCEEEEEEECC-CCceeEEEEe--ccCCceeeeEEEeeCCEEEEEe
Q 045559 243 PNCLLEISPKHTVFGL--YND---SLSFLVFDERESCFDIWTMKE-RYHWTKEFST--TPILAVDAPIGFWKNDTFFIRS 314 (335)
Q Consensus 243 P~~~~~~~~~~~~l~~--~~g---~L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i--~~~~~~~~~~~~~~~~~il~~~ 314 (335)
|+..+ .+..+.. -|. ++++.+.-.+..-=++|.|+- .-.|++...- -|++.-.+...+. .++.++..
T Consensus 197 P~pRE----SHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfG 271 (830)
T KOG4152|consen 197 PPPRE----SHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFG 271 (830)
T ss_pred CCCcc----cceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee-cceeEEec
Confidence 44332 2222222 222 244444433344567899997 7789875321 1333211111111 12222211
Q ss_pred --------------------cCCeEEEEeCCCCceeecc
Q 045559 315 --------------------NTEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 315 --------------------~~~~l~~yd~~~~~~~~v~ 333 (335)
....+-+.|+.+.+|+.+.
T Consensus 272 GWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 272 GWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred ceeeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 1246889999999998763
No 62
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.85 E-value=26 Score=30.58 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=66.1
Q ss_pred eeeee--cceEEEEeecCCCCCccCceEEEEEECCcccee-eecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEE
Q 045559 201 DCTYH--NGACHWLVPFGAFHPLCCHYVILSFDMSDEVFE-EILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDI 277 (335)
Q Consensus 201 ~~v~~--~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~I 277 (335)
+|... +|.+|=-+.... +..|-.+|+.+.+.. ..++|... ..--++..+++|+.+.-. .+..-+
T Consensus 48 QGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~-----FgEGit~~~d~l~qLTWk--~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRY-----FGEGITILGDKLYQLTWK--EGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESS--SSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccc-----cceeEEEECCEEEEEEec--CCeEEE
Confidence 46544 577776655433 568999999998775 55888754 334588889999999987 455545
Q ss_pred EEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEEecCCeEEEEeCCCC
Q 045559 278 WTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSNTEELLLYDPNSE 327 (335)
Q Consensus 278 W~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~~~~l~~yd~~~~ 327 (335)
|-.+ ...++.++ +++. .-=|++.+|+ ++...+..+|...||++=
T Consensus 115 yd~~---tl~~~~~~-~y~~--EGWGLt~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 115 YDPN---TLKKIGTF-PYPG--EGWGLTSDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp EETT---TTEEEEEE-E-SS--S--EEEECSSCEEEE-SSSEEEEE-TTT-
T ss_pred Eccc---cceEEEEE-ecCC--cceEEEcCCCEEEEECCccceEEECCccc
Confidence 5444 34555555 4442 2233345666 555666788999999874
No 63
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.23 E-value=13 Score=32.45 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=75.4
Q ss_pred ccccccceEEEeec-CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCC
Q 045559 92 FRGPFEGLFIMFIG-GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDS 170 (335)
Q Consensus 92 ~~~s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 170 (335)
+++.-+|-|-+..- .+.+...||.++.-..+|.+... .. ..-....|+.. -+++.. ...
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~--~~----gsRriwsdpig----~~witt----------wg~ 253 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNAL--KA----GSRRIWSDPIG----RAWITT----------WGT 253 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcc--cc----cccccccCccC----cEEEec----------cCC
Confidence 44455565554432 45677889999987788877653 00 02233444432 223322 224
Q ss_pred ceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCc
Q 045559 171 RQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNC 245 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~ 245 (335)
-.++.|+..+.+|+.-. +|-. ...+ ++++++.. .-|+..-+ ...|..||.++++|+++++|..
T Consensus 254 g~l~rfdPs~~sW~eyp-LPgs-~arp---ys~rVD~~grVW~sea~-------agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 254 GSLHRFDPSVTSWIEYP-LPGS-KARP---YSMRVDRHGRVWLSEAD-------AGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ceeeEeCcccccceeee-CCCC-CCCc---ceeeeccCCcEEeeccc-------cCceeecCcccceEEEecCCCC
Confidence 46888998888999764 2221 1111 46666654 56776654 5689999999999999988864
No 64
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=82.69 E-value=37 Score=30.69 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=69.1
Q ss_pred ecceEEEEeecCCCCCccCceEEEEEECCccceeee---cCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEEC
Q 045559 205 HNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI---LGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMK 281 (335)
Q Consensus 205 ~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i---~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~ 281 (335)
-+|.+-|...-+ ...|..||++....... .+++..+. +++ +.--+|+++.+..+- .+++.+|..+
T Consensus 154 P~~~~l~v~DLG-------~Dri~~y~~~dg~L~~~~~~~v~~G~GP---RHi-~FHpn~k~aY~v~EL-~stV~v~~y~ 221 (346)
T COG2706 154 PDGRYLVVPDLG-------TDRIFLYDLDDGKLTPADPAEVKPGAGP---RHI-VFHPNGKYAYLVNEL-NSTVDVLEYN 221 (346)
T ss_pred CCCCEEEEeecC-------CceEEEEEcccCccccccccccCCCCCc---ceE-EEcCCCcEEEEEecc-CCEEEEEEEc
Confidence 345444444444 33677777775555443 44443332 222 456688865555543 7899999999
Q ss_pred C-CCceeEEEEeccCCc------eeeeEEEeeCCEEEEEecC--Ce--EEEEeCCCCceeecc
Q 045559 282 E-RYHWTKEFSTTPILA------VDAPIGFWKNDTFFIRSNT--EE--LLLYDPNSEEIIDFQ 333 (335)
Q Consensus 282 ~-~~~W~~~~~i~~~~~------~~~~~~~~~~~~il~~~~~--~~--l~~yd~~~~~~~~v~ 333 (335)
. ..+-..+.+|..++. -..-+.+..||++++..+. +. ++.-|+.+++++-++
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~ 284 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG 284 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence 8 455556666632221 2445566779998877652 33 566778878777654
No 65
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.32 E-value=31 Score=28.93 Aligned_cols=134 Identities=10% Similarity=0.125 Sum_probs=70.9
Q ss_pred eEEEEEcCCCc--ceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceee-ecCCCcccc
Q 045559 172 QVFIYSFSDNS--WRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEE-ILGPNCLLE 248 (335)
Q Consensus 172 ~~~vyss~~~~--W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~ 248 (335)
.+..++..+++ |+.--..+..-... ..+..+|.+|.... ...|.++|..+.+-.. ..++.....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~----~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~ 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVA----TAVPDGGRVYVASG---------DGNLYALDAKTGKVLWRFDLPGPISG 70 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEE----TEEEETTEEEEEET---------TSEEEEEETTTSEEEEEEECSSCGGS
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccc----eEEEeCCEEEEEcC---------CCEEEEEECCCCCEEEEeeccccccc
Confidence 45677776653 87632111110100 14457788887743 4489999985554322 244443321
Q ss_pred CCCCeeEEEEeCCeEEEEEecCCCCEEEEEEEC--C-CCceeEEEEeccCCce-eeeEEEeeCCEEEEEecCCeEEEEeC
Q 045559 249 ISPKHTVFGLYNDSLSFLVFDERESCFDIWTMK--E-RYHWTKEFSTTPILAV-DAPIGFWKNDTFFIRSNTEELLLYDP 324 (335)
Q Consensus 249 ~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~--~-~~~W~~~~~i~~~~~~-~~~~~~~~~~~il~~~~~~~l~~yd~ 324 (335)
.....++.+++.... + .|+.++ . +..|.......+.... ..+.....++.+++......|+.+|+
T Consensus 71 ------~~~~~~~~v~v~~~~---~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 71 ------APVVDGGRVYVGTSD---G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp ------GEEEETTEEEEEETT---S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred ------eeeecccccccccce---e--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 136677777776632 3 455555 3 6678732222122212 11112122455666666778999999
Q ss_pred CCCce
Q 045559 325 NSEEI 329 (335)
Q Consensus 325 ~~~~~ 329 (335)
++++.
T Consensus 140 ~tG~~ 144 (238)
T PF13360_consen 140 KTGKL 144 (238)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 98776
No 66
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=81.21 E-value=40 Score=30.17 Aligned_cols=138 Identities=9% Similarity=0.050 Sum_probs=69.4
Q ss_pred CceEEEEEcCC-CcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECC-ccceeee-cCCCc
Q 045559 170 SRQVFIYSFSD-NSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMS-DEVFEEI-LGPNC 245 (335)
Q Consensus 170 ~~~~~vyss~~-~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~-~e~~~~i-~~P~~ 245 (335)
...+.+|+..+ +.++.+...+.. .... ...+.-+|. +|..... ...|.+|++. +..+..+ ..|..
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~-~~~~--~l~~spd~~~lyv~~~~--------~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVP-GQVQ--PMVISPDKRHLYVGVRP--------EFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecC-CCCc--cEEECCCCCEEEEEECC--------CCcEEEEEECCCCceEEeeeecCC
Confidence 45677887754 566655433321 1111 011222454 4554432 3367778875 4455544 22221
Q ss_pred cccCCCCeeEEEEe-CCe-EEEEEecCCCCEEEEEEECCCC-ceeEEEEeccCCceeeeEEEeeCCEEEEE-e-cCCeEE
Q 045559 246 LLEISPKHTVFGLY-NDS-LSFLVFDERESCFDIWTMKERY-HWTKEFSTTPILAVDAPIGFWKNDTFFIR-S-NTEELL 320 (335)
Q Consensus 246 ~~~~~~~~~~l~~~-~g~-L~~~~~~~~~~~~~IW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~-~~~~l~ 320 (335)
. ....++.. +|+ |++.... .+.+.+|-+++.+ .......+ +...-..-+.+.++|+.++. . +++.+.
T Consensus 80 ~-----~p~~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 80 G-----SPTHISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred C-----CceEEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 1 11234433 565 6666554 6789999997512 22222333 22111233455667775543 3 357899
Q ss_pred EEeCCC
Q 045559 321 LYDPNS 326 (335)
Q Consensus 321 ~yd~~~ 326 (335)
+||+++
T Consensus 152 v~d~~~ 157 (330)
T PRK11028 152 LFTLSD 157 (330)
T ss_pred EEEECC
Confidence 999976
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=80.84 E-value=34 Score=29.14 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=65.9
Q ss_pred eeeee--cceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEE
Q 045559 201 DCTYH--NGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIW 278 (335)
Q Consensus 201 ~~v~~--~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW 278 (335)
.+++. +|.+||.... ...|..+|..+.+...+..|... ...+..-+|+|++.... .+.+.
T Consensus 4 gp~~d~~~g~l~~~D~~--------~~~i~~~~~~~~~~~~~~~~~~~------G~~~~~~~g~l~v~~~~----~~~~~ 65 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP--------GGRIYRVDPDTGEVEVIDLPGPN------GMAFDRPDGRLYVADSG----GIAVV 65 (246)
T ss_dssp EEEEETTTTEEEEEETT--------TTEEEEEETTTTEEEEEESSSEE------EEEEECTTSEEEEEETT----CEEEE
T ss_pred ceEEECCCCEEEEEEcC--------CCEEEEEECCCCeEEEEecCCCc------eEEEEccCCEEEEEEcC----ceEEE
Confidence 45566 6999999765 34899999999998888777621 22222246777766643 23333
Q ss_pred EECCCCceeEEEEeccC-C-ceeeeE--EEeeCCEEEEEecC---------CeEEEEeCCCCceee
Q 045559 279 TMKERYHWTKEFSTTPI-L-AVDAPI--GFWKNDTFFIRSNT---------EELLLYDPNSEEIID 331 (335)
Q Consensus 279 ~l~~~~~W~~~~~i~~~-~-~~~~~~--~~~~~~~il~~~~~---------~~l~~yd~~~~~~~~ 331 (335)
-++ ...+...... +. . ....|. ++.++|.+++.... .+++.++++ ++.+.
T Consensus 66 d~~-~g~~~~~~~~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 66 DPD-TGKVTVLADL-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp ETT-TTEEEEEEEE-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred ecC-CCcEEEEeec-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 222 4677777666 32 2 334454 44567887775431 458888888 55443
No 68
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.75 E-value=42 Score=30.06 Aligned_cols=71 Identities=10% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEec--CCeEEEEe--CCCCceeecc
Q 045559 260 NDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSN--TEELLLYD--PNSEEIIDFQ 333 (335)
Q Consensus 260 ~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~yd--~~~~~~~~v~ 333 (335)
+|+ |++... ..+.+.+|.++. ...+.....+ +.....+-+.+.++|+.++..+ ++.+..|+ .+++.++.++
T Consensus 238 dg~~lyv~~~--~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 238 DGRHLYACDR--TASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCEEEEecC--CCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 555 555533 367899999976 4566666666 4332334456667888655432 55676664 5666776653
No 69
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.93 E-value=52 Score=30.11 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=54.4
Q ss_pred eeeecceEEEEeecCCCCCccCceEEEEEECCcccee-eecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEE
Q 045559 202 CTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFE-EILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTM 280 (335)
Q Consensus 202 ~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l 280 (335)
++..+|.+|..... ..+.+||..+.+-. ..+++.... ...+..++.+++.... ..+..+-.
T Consensus 61 p~v~~~~v~v~~~~---------g~v~a~d~~tG~~~W~~~~~~~~~------~~p~v~~~~v~v~~~~---g~l~ald~ 122 (377)
T TIGR03300 61 PAVAGGKVYAADAD---------GTVVALDAETGKRLWRVDLDERLS------GGVGADGGLVFVGTEK---GEVIALDA 122 (377)
T ss_pred eEEECCEEEEECCC---------CeEEEEEccCCcEeeeecCCCCcc------cceEEcCCEEEEEcCC---CEEEEEEC
Confidence 67888988887753 37999997655432 224443221 1123334445443322 22222222
Q ss_pred CC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeCCCCce
Q 045559 281 KE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 281 ~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~ 329 (335)
+. +..|... + +-.....|+. .++.+++...+..|..+|+++++.
T Consensus 123 ~tG~~~W~~~--~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 123 EDGKELWRAK--L-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER 167 (377)
T ss_pred CCCcEeeeec--c-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce
Confidence 22 4456542 2 1111123333 255666666677899999887653
No 70
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.72 E-value=52 Score=29.94 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEe-ecCCCCCccCceEEEEEECCccceeee-cCCCcccc
Q 045559 171 RQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLV-PFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLE 248 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~-~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~ 248 (335)
..+-+|+..++.|+.....|+.....+ ++...|..-++. ....+.-++......-|.-...+|... .+|.....
T Consensus 196 ~ev~sy~p~~n~W~~~G~~pf~~~aGs----a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~ 271 (381)
T COG3055 196 KEVLSYDPSTNQWRNLGENPFYGNAGS----AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGS 271 (381)
T ss_pred ccccccccccchhhhcCcCcccCccCc----ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCC
Confidence 467788899999999876665422222 445444433332 221111011134566666778899988 66665433
Q ss_pred CC--CCeeEEEEeCCeEEEEEecC--------------------CCCEEEEEEECCCCceeEEEEeccCCceeeeEEEee
Q 045559 249 IS--PKHTVFGLYNDSLSFLVFDE--------------------RESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWK 306 (335)
Q Consensus 249 ~~--~~~~~l~~~~g~L~~~~~~~--------------------~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~ 306 (335)
.. -....-+.++|.+-+...-- -.-.-+||+++. .+|.....+ |. .+..-+.+.-
T Consensus 272 ~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~-g~Wk~~GeL-p~-~l~YG~s~~~ 348 (381)
T COG3055 272 NKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN-GSWKIVGEL-PQ-GLAYGVSLSY 348 (381)
T ss_pred CccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC-Cceeeeccc-CC-CccceEEEec
Confidence 21 01112234455544443311 122467899996 999998888 65 5555566666
Q ss_pred CCEEEEEec
Q 045559 307 NDTFFIRSN 315 (335)
Q Consensus 307 ~~~il~~~~ 315 (335)
++.++++..
T Consensus 349 nn~vl~IGG 357 (381)
T COG3055 349 NNKVLLIGG 357 (381)
T ss_pred CCcEEEEcc
Confidence 777777653
No 71
>smart00612 Kelch Kelch domain.
Probab=78.65 E-value=7 Score=23.19 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=17.3
Q ss_pred ceEEEEEECCccceeee-cCCCc
Q 045559 224 HYVILSFDMSDEVFEEI-LGPNC 245 (335)
Q Consensus 224 ~~~i~~fD~~~e~~~~i-~~P~~ 245 (335)
...+..||+.+.+|+.+ ++|..
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCc
Confidence 34688999999999988 55543
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.46 E-value=54 Score=30.01 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=56.1
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccc--eeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEE
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEV--FEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIW 278 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~--~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW 278 (335)
.+++.+|.+|.....+ .+.++|.++.+ |.. +.+. ....+..+|.+++... ...+..+
T Consensus 236 ~p~~~~~~vy~~~~~g---------~l~a~d~~tG~~~W~~-~~~~--------~~~p~~~~~~vyv~~~---~G~l~~~ 294 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQG---------RVAALDLRSGRVLWKR-DASS--------YQGPAVDDNRLYVTDA---DGVVVAL 294 (377)
T ss_pred ccEEECCEEEEEEcCC---------EEEEEECCCCcEEEee-ccCC--------ccCceEeCCEEEEECC---CCeEEEE
Confidence 3677889998876543 69999987653 432 2111 1123345666665542 2334444
Q ss_pred EECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeCCCCce
Q 045559 279 TMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 279 ~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~ 329 (335)
-.+. ...|.... + .......|+. .++.+++...+..|+.+|+++++.
T Consensus 295 d~~tG~~~W~~~~-~-~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 295 DRRSGSELWKNDE-L-KYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred ECCCCcEEEcccc-c-cCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 3333 34565421 2 1122234433 245666666667788888877655
No 73
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=77.92 E-value=45 Score=28.75 Aligned_cols=103 Identities=8% Similarity=0.096 Sum_probs=54.2
Q ss_pred EEEEEECCccce-eeecC--CCccccCCCCeeEEE-EeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeee
Q 045559 226 VILSFDMSDEVF-EEILG--PNCLLEISPKHTVFG-LYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAP 301 (335)
Q Consensus 226 ~i~~fD~~~e~~-~~i~~--P~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~ 301 (335)
.|..+|+++.+. ..+.. |...... .....+. .-+|+..++.... .+.+.||-++. |.....+ ........
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~s~dg~~~~~~~~~-~~~i~v~d~~~---~~~~~~~-~~~~~~~~ 253 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEA-VQPVGIKLTKDGKTAFVALGP-ANRVAVVDAKT---YEVLDYL-LVGQRVWQ 253 (300)
T ss_pred EEEEEEcCcceeeeeeeeccccccccc-CCccceEECCCCCEEEEEcCC-CCeEEEEECCC---CcEEEEE-EeCCCcce
Confidence 678889877643 22221 1110000 0111232 3356543333222 45688886653 4444444 23333445
Q ss_pred EEEeeCCEEEEEe--cCCeEEEEeCCCCce-eeccc
Q 045559 302 IGFWKNDTFFIRS--NTEELLLYDPNSEEI-IDFQH 334 (335)
Q Consensus 302 ~~~~~~~~il~~~--~~~~l~~yd~~~~~~-~~v~~ 334 (335)
+.+.++|+.++.. .++.|.+||+++.+. +++++
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 5667788865543 467899999999884 55554
No 74
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=77.43 E-value=55 Score=29.58 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeee----cCCC
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI----LGPN 244 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i----~~P~ 244 (335)
...+.+|++.++.=.............+ ..-...=||. .|.+..-.+ +..+..+|....++..+ -+|.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~EL~s------tV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNELNS------TVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEeccCC------EEEEEEEcCCCceEEEeeeeccCcc
Confidence 5678899988876655442211111111 0112333565 566665432 44556666655777665 4565
Q ss_pred ccccCCCCeeEEE-EeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCc-eeeeEEEeeCCEEEEEec--CC-
Q 045559 245 CLLEISPKHTVFG-LYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILA-VDAPIGFWKNDTFFIRSN--TE- 317 (335)
Q Consensus 245 ~~~~~~~~~~~l~-~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~-~~~~~~~~~~~~il~~~~--~~- 317 (335)
..... ..-..+- .-+|+ |++.... ...|.+...++ ...=...... +... ..+-+-+...|++++..+ ..
T Consensus 239 dF~g~-~~~aaIhis~dGrFLYasNRg--~dsI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 239 DFTGT-NWAAAIHISPDGRFLYASNRG--HDSIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred ccCCC-CceeEEEECCCCCEEEEecCC--CCeEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 54332 1122233 33666 6766665 56787888887 3332222222 3222 245555666788777654 22
Q ss_pred -eEEEEeCCCCceeecc
Q 045559 318 -ELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 318 -~l~~yd~~~~~~~~v~ 333 (335)
.++.=|.+|+++.+++
T Consensus 315 i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 315 ITVFERDKETGRLTLLG 331 (346)
T ss_pred EEEEEEcCCCceEEecc
Confidence 3677789999888764
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=77.29 E-value=67 Score=30.47 Aligned_cols=185 Identities=8% Similarity=-0.013 Sum_probs=94.1
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...++++|..|++...+...+.. .....+.|..+ +-++.. . ......+.+++.+++..+.
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~---------~~~~~wSPDG~-~La~~~-~---------~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI---------NGAPRFSPDGK-KLALVL-S---------KDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC---------cCCeeECCCCC-EEEEEE-e---------CCCCeEEEEEECCCCCeEE
Confidence 45799999999887666544322 12345555433 222222 1 1224567778888887776
Q ss_pred cCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCe-E
Q 045559 186 FQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDS-L 263 (335)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~-L 263 (335)
+..... ....+ ...-+|. +++...... ...|..+|+.+.+...+....... .... ..-+|+ |
T Consensus 301 lt~~~~-~~~~p----~wSpDG~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt~~g~~~----~~~~-~SpDG~~l 364 (448)
T PRK04792 301 ITRHRA-IDTEP----SWHPDGKSLIFTSERGG------KPQIYRVNLASGKVSRLTFEGEQN----LGGS-ITPDGRSM 364 (448)
T ss_pred CccCCC-Cccce----EECCCCCEEEEEECCCC------CceEEEEECCCCCEEEEecCCCCC----cCee-ECCCCCEE
Confidence 542211 11111 2223554 444443322 347888898877776653221110 1122 233665 5
Q ss_pred EEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEEeCCCCceeec
Q 045559 264 SFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 264 ~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~yd~~~~~~~~v 332 (335)
++.... .....||+++- ......+. ....-..| .+.+||+ |++... ...++.+|.+.+..+.+
T Consensus 365 ~~~~~~--~g~~~I~~~dl~~g~~~~lt---~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 365 IMVNRT--NGKFNIARQDLETGAMQVLT---STRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred EEEEec--CCceEEEEEECCCCCeEEcc---CCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 655544 45678888875 33332211 11111334 4466777 445432 23478888876655544
No 76
>PRK00178 tolB translocation protein TolB; Provisional
Probab=77.10 E-value=65 Score=30.18 Aligned_cols=185 Identities=10% Similarity=0.044 Sum_probs=92.9
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...++++|..|++.+.+...+.. .....+.|.. ++-++.... .....+++++..++..+.
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~---------~~~~~~SpDG-~~la~~~~~----------~g~~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL---------NGAPAWSPDG-SKLAFVLSK----------DGNPEIYVMDLASRQLSR 281 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC---------cCCeEECCCC-CEEEEEEcc----------CCCceEEEEECCCCCeEE
Confidence 35789999999987777644322 1234445532 332222211 123567888888888776
Q ss_pred cCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCe-E
Q 045559 186 FQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDS-L 263 (335)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~-L 263 (335)
+...+. ....+ ...-+|. +++...... ...|..+|+.+.....+....... ....+ .-+|+ |
T Consensus 282 lt~~~~-~~~~~----~~spDg~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt~~~~~~----~~~~~-Spdg~~i 345 (430)
T PRK00178 282 VTNHPA-IDTEP----FWGKDGRTLYFTSDRGG------KPQIYKVNVNGGRAERVTFVGNYN----ARPRL-SADGKTL 345 (430)
T ss_pred cccCCC-CcCCe----EECCCCCEEEEEECCCC------CceEEEEECCCCCEEEeecCCCCc----cceEE-CCCCCEE
Confidence 542211 11111 2223553 555544332 346788888777766553221110 11222 22455 6
Q ss_pred EEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEEeCCCCceeec
Q 045559 264 SFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 264 ~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~yd~~~~~~~~v 332 (335)
++.... .....||+++- .........- .....| .+.+||+ +++... ...|+..+..++.-+.+
T Consensus 346 ~~~~~~--~~~~~l~~~dl~tg~~~~lt~~---~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 346 VMVHRQ--DGNFHVAAQDLQRGSVRILTDT---SLDESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred EEEEcc--CCceEEEEEECCCCCEEEccCC---CCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 555543 23456777765 3443332211 111334 4566777 444443 24588888876654443
No 77
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=76.43 E-value=14 Score=22.16 Aligned_cols=41 Identities=2% Similarity=-0.040 Sum_probs=30.8
Q ss_pred CeeEEEEeCCeEEEEEecCC--CCEEEEEEECC-CCceeEEEEe
Q 045559 252 KHTVFGLYNDSLSFLVFDER--ESCFDIWTMKE-RYHWTKEFST 292 (335)
Q Consensus 252 ~~~~l~~~~g~L~~~~~~~~--~~~~~IW~l~~-~~~W~~~~~i 292 (335)
.....+..+++|++++.... ...-.+|+++. +..|...-.+
T Consensus 3 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 3 SGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp BSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred ccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 34568899999999998742 44566677776 7999987665
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=75.89 E-value=71 Score=30.06 Aligned_cols=185 Identities=9% Similarity=0.067 Sum_probs=90.3
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...++++|+.|++.+.+...+.. .....+.|.. +.-++... ......+.+++.+++.-+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~---------~~~~~~SPDG-~~la~~~~----------~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM---------TFAPRFSPDG-RKVVMSLS----------QGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc---------ccCcEECCCC-CEEEEEEe----------cCCCceEEEEECCCCceEE
Confidence 46899999999987776543322 2234455533 22222221 1123456777877776655
Q ss_pred cCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecC-CCccccCCCCeeEEEEeCCe-
Q 045559 186 FQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILG-PNCLLEISPKHTVFGLYNDS- 262 (335)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~-P~~~~~~~~~~~~l~~~~g~- 262 (335)
+...+. ....+ ...-+|. +++...... ...|..+|+.+...+.+.. +... ..... .-+|+
T Consensus 285 Lt~~~~-~~~~~----~~spDG~~i~f~s~~~g------~~~Iy~~d~~g~~~~~lt~~~~~~-----~~~~~-SpdG~~ 347 (435)
T PRK05137 285 LTDSPA-IDTSP----SYSPDGSQIVFESDRSG------SPQLYVMNADGSNPRRISFGGGRY-----STPVW-SPRGDL 347 (435)
T ss_pred ccCCCC-ccCce----eEcCCCCEEEEEECCCC------CCeEEEEECCCCCeEEeecCCCcc-----cCeEE-CCCCCE
Confidence 542211 11111 2223453 444332221 3367778887766665522 1111 11222 23555
Q ss_pred EEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---C---CeEEEEeCCCCceeec
Q 045559 263 LSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---T---EELLLYDPNSEEIIDF 332 (335)
Q Consensus 263 L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~---~~l~~yd~~~~~~~~v 332 (335)
|++.... .....||+++......+..+- .. .... ..+.+||+ |++... . ..|+.+|+.+++.+.+
T Consensus 348 ia~~~~~--~~~~~i~~~d~~~~~~~~lt~-~~-~~~~-p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 348 IAFTKQG--GGQFSIGVMKPDGSGERILTS-GF-LVEG-PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EEEEEcC--CCceEEEEEECCCCceEeccC-CC-CCCC-CeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 6665544 334566666541222222111 11 1223 34466777 445443 1 3699999988776654
No 79
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=71.51 E-value=4.7 Score=24.85 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCcceecCccccccccc
Q 045559 169 DSRQVFIYSFSDNSWRNFQGFEFGMYDL 196 (335)
Q Consensus 169 ~~~~~~vyss~~~~W~~~~~~p~~~~~~ 196 (335)
....+++|+..+++|+.++.+|.+...+
T Consensus 17 ~~nd~~~~~~~~~~W~~~~~~P~~R~~h 44 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRIGDLPPPRSGH 44 (49)
T ss_pred EecCEEEEECCCCEEEECCCCCCCccce
Confidence 3467899999999999997666554433
No 80
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=67.87 E-value=1e+02 Score=28.48 Aligned_cols=185 Identities=10% Similarity=0.081 Sum_probs=93.6
Q ss_pred ccceEEEeecCceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEE
Q 045559 96 FEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFI 175 (335)
Q Consensus 96 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~v 175 (335)
.+|.|.+......++.+|+.|++.+.--..+.. ... .-.+. + . +|+... ..-.+.-
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~s-sP~v~-~----~-~v~v~~------------~~g~l~a 174 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALS-RPVVS-D----G-LVLVHT------------SNGMLQA 174 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eec-CCEEE-C----C-EEEEEC------------CCCEEEE
Confidence 466776666567889999999885542222111 000 00111 1 1 222211 1224666
Q ss_pred EEcCCCc--ceecCcccc-cccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCcc--ceee-ecCCCccccC
Q 045559 176 YSFSDNS--WRNFQGFEF-GMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDE--VFEE-ILGPNCLLEI 249 (335)
Q Consensus 176 yss~~~~--W~~~~~~p~-~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e--~~~~-i~~P~~~~~~ 249 (335)
++.+++. |+.-...|. ...... .++..+|.+|+-... ..+.++|.++. .|+. +..|......
T Consensus 175 ld~~tG~~~W~~~~~~~~~~~~~~~---sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLTLRGES---APATAFGGAIVGGDN---------GRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred EEccCCCEeeeecCCCCcccccCCC---CCEEECCEEEEEcCC---------CEEEEEEccCChhhheeccccCCCccch
Confidence 7776654 876432221 111111 367788888876543 36889998765 4542 2223211100
Q ss_pred ---CCCeeEEEEeCCeEEEEEecCCCCEEEEEEECC---CCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEe
Q 045559 250 ---SPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE---RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYD 323 (335)
Q Consensus 250 ---~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~---~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd 323 (335)
......-+..+|.+++.... .. ++.++. ...|.+... ....|+ ..++.+++...+..++.+|
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~~---g~--l~ald~~tG~~~W~~~~~-----~~~~~~--~~~~~vy~~~~~g~l~ald 310 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAYN---GN--LVALDLRSGQIVWKREYG-----SVNDFA--VDGGRIYLVDQNDRVYALD 310 (394)
T ss_pred hcccccCCCcEEECCEEEEEEcC---Ce--EEEEECCCCCEEEeecCC-----CccCcE--EECCEEEEEcCCCeEEEEE
Confidence 00011223456777766543 22 344443 456865321 111222 2366788877778899999
Q ss_pred CCCCc
Q 045559 324 PNSEE 328 (335)
Q Consensus 324 ~~~~~ 328 (335)
+++++
T Consensus 311 ~~tG~ 315 (394)
T PRK11138 311 TRGGV 315 (394)
T ss_pred CCCCc
Confidence 98765
No 81
>PRK05137 tolB translocation protein TolB; Provisional
Probab=67.37 E-value=1.1e+02 Score=28.73 Aligned_cols=184 Identities=9% Similarity=0.117 Sum_probs=89.7
Q ss_pred ceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceec
Q 045559 107 DEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNF 186 (335)
Q Consensus 107 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 186 (335)
.++++++.-++..+.|...... .....+.|.. + +++.+.. . .....+.++++.++..+.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~---------v~~p~wSpDG-~-~lay~s~--~-------~g~~~i~~~dl~~g~~~~l 241 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSL---------VLTPRFSPNR-Q-EITYMSY--A-------NGRPRVYLLDLETGQRELV 241 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCC---------eEeeEECCCC-C-EEEEEEe--c-------CCCCEEEEEECCCCcEEEe
Confidence 4788888876655555433222 3344555543 2 3333321 1 1235788888888877665
Q ss_pred CcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCe-E
Q 045559 187 QGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDS-L 263 (335)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~-L 263 (335)
...+-... .+ ...-+|. +.+...... ...|..+|+++.....+ ..+... ..... .-+|+ |
T Consensus 242 ~~~~g~~~-~~----~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~~~~~-----~~~~~-spDG~~i 304 (435)
T PRK05137 242 GNFPGMTF-AP----RFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDSPAID-----TSPSY-SPDGSQI 304 (435)
T ss_pred ecCCCccc-Cc----EECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCCCCcc-----CceeE-cCCCCEE
Confidence 43221111 11 2333553 444333221 34688889887766554 322211 11111 23555 5
Q ss_pred EEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEEeCCCCceeec
Q 045559 264 SFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 264 ~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~yd~~~~~~~~v 332 (335)
+..... ....+||+++- .....++. - .-.....| ...++|+ |++... ...++.+|++++..+.+
T Consensus 305 ~f~s~~--~g~~~Iy~~d~~g~~~~~lt-~-~~~~~~~~-~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 305 VFESDR--SGSPQLYVMNADGSNPRRIS-F-GGGRYSTP-VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred EEEECC--CCCCeEEEEECCCCCeEEee-c-CCCcccCe-EECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 544332 33456777765 23222221 1 11112233 3456776 545443 24689999877665443
No 82
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=67.24 E-value=18 Score=19.65 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=18.7
Q ss_pred eCCEEEEEecCCeEEEEeCCCCce
Q 045559 306 KNDTFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 306 ~~~~il~~~~~~~l~~yd~~~~~~ 329 (335)
.+|.+++...+..++.+|.++++.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcE
Confidence 356677777778999999988765
No 83
>PLN02772 guanylate kinase
Probab=67.18 E-value=42 Score=31.21 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=50.4
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee----cCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEE
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI----LGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFD 276 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i----~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~ 276 (335)
.++.++..+|.++...... .....+-.||..+.+|..- ..|.... .+.....-+++|.++.... ...=+
T Consensus 29 tav~igdk~yv~GG~~d~~--~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~----GhSa~v~~~~rilv~~~~~-~~~~~ 101 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGN--TLSIGVQILDKITNNWVSPIVLGTGPKPCK----GYSAVVLNKDRILVIKKGS-APDDS 101 (398)
T ss_pred eeEEECCEEEEEcccCCCc--cccceEEEEECCCCcEecccccCCCCCCCC----cceEEEECCceEEEEeCCC-CCccc
Confidence 5899999999988643211 0135799999999999764 2232221 3444555578898888765 34578
Q ss_pred EEEECC
Q 045559 277 IWTMKE 282 (335)
Q Consensus 277 IW~l~~ 282 (335)
||.|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 999886
No 84
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=67.12 E-value=83 Score=27.16 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCc----cceeeecCCCcc
Q 045559 171 RQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSD----EVFEEILGPNCL 246 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~----e~~~~i~~P~~~ 246 (335)
...-+|+..+++++.+.. ........ ..+.-||.+.-....... ...+-.|+..+ ..|.+..--...
T Consensus 46 a~s~~yD~~tn~~rpl~v-~td~FCSg---g~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~ 116 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV-QTDTFCSG---GAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQS 116 (243)
T ss_pred EEEEEEecCCCcEEeccC-CCCCcccC---cCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccC
Confidence 345788899999987752 22222222 366677876644433221 33566677654 345543211111
Q ss_pred ccCCCCeeEEE-EeCCeEEEEEecCCCCEEEEEEECC--CC--ceeEEEEe-ccCCceeeeE-EEeeCCEEEEEecCCeE
Q 045559 247 LEISPKHTVFG-LYNDSLSFLVFDERESCFDIWTMKE--RY--HWTKEFST-TPILAVDAPI-GFWKNDTFFIRSNTEEL 319 (335)
Q Consensus 247 ~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~IW~l~~--~~--~W~~~~~i-~~~~~~~~~~-~~~~~~~il~~~~~~~l 319 (335)
.. ...... --||++.+++... ....+.|=-.. .. .|...... +......+|+ .+.++|++|+..+.. -
T Consensus 117 ~R---WYpT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s 191 (243)
T PF07250_consen 117 GR---WYPTATTLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-S 191 (243)
T ss_pred CC---ccccceECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-c
Confidence 11 223333 3388888888875 34455443322 11 11111111 0111225555 446799998877753 5
Q ss_pred EEEeCCCCce
Q 045559 320 LLYDPNSEEI 329 (335)
Q Consensus 320 ~~yd~~~~~~ 329 (335)
..||.+++++
T Consensus 192 ~i~d~~~n~v 201 (243)
T PF07250_consen 192 IIYDYKTNTV 201 (243)
T ss_pred EEEeCCCCeE
Confidence 6679999976
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=66.42 E-value=2.7 Score=40.81 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=30.4
Q ss_pred hhHhccCChhhhhhheeccccchhhhCChHhHHHH
Q 045559 3 VEILSKFPVKSLLRFRCVCKSWYELFESPSFISKH 37 (335)
Q Consensus 3 ~eIL~rLP~k~l~r~r~VcK~W~~li~sp~F~~~~ 37 (335)
..||..|+.+++++++.||+.|+.+..+.....+.
T Consensus 117 ~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 117 LHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred ccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 56899999999999999999999999977666643
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.04 E-value=1.8 Score=39.96 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=28.1
Q ss_pred ChhhHhccCChhhhhhheeccccchhhhCChH
Q 045559 1 MVVEILSKFPVKSLLRFRCVCKSWYELFESPS 32 (335)
Q Consensus 1 ll~eIL~rLP~k~l~r~r~VcK~W~~li~sp~ 32 (335)
++.+||+-|..|+++|++.+||.|+-+..+-.
T Consensus 79 l~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 79 LLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 36789999999999999999999999887643
No 87
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=65.06 E-value=1.3e+02 Score=28.64 Aligned_cols=111 Identities=11% Similarity=-0.010 Sum_probs=60.5
Q ss_pred eeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEEC
Q 045559 202 CTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMK 281 (335)
Q Consensus 202 ~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~ 281 (335)
-..++|-.+-+...+ +..|+ +.-..-- ++++....- ....+..... ..+....+...+.|+-.+
T Consensus 327 fa~~~Gd~ia~VSRG-------kaFi~--~~~~~~~--iqv~~~~~V---rY~r~~~~~e--~~vigt~dgD~l~iyd~~ 390 (668)
T COG4946 327 FAVVNGDYIALVSRG-------KAFIM--RPWDGYS--IQVGKKGGV---RYRRIQVDPE--GDVIGTNDGDKLGIYDKD 390 (668)
T ss_pred hccCCCcEEEEEecC-------cEEEE--CCCCCee--EEcCCCCce---EEEEEccCCc--ceEEeccCCceEEEEecC
Confidence 356788888888766 23333 3222222 233322111 2233333333 333333335577777766
Q ss_pred CCCceeEEEEec-cCCceeeeEEEeeCCE-EEEEecCCeEEEEeCCCCceeecc
Q 045559 282 ERYHWTKEFSTT-PILAVDAPIGFWKNDT-FFIRSNTEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 282 ~~~~W~~~~~i~-~~~~~~~~~~~~~~~~-il~~~~~~~l~~yd~~~~~~~~v~ 333 (335)
. . +.-++. ++.. ...+++..+|+ +++..+..+++++|.++++.+.+.
T Consensus 391 ~-~---e~kr~e~~lg~-I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 391 G-G---EVKRIEKDLGN-IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred C-c---eEEEeeCCccc-eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 5 2 222342 3333 44567788988 555566778999999999887663
No 88
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=64.96 E-value=76 Score=29.66 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=70.6
Q ss_pred cccceEEEeec-----CceEEEEecchhhhhcCCCCcccC--CcCCceeeeeEEeecCCCCCeEEEEEEEEecCcccccc
Q 045559 95 PFEGLFIMFIG-----GDEIALYNHATRDLKFLPKLTLID--NLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVL 167 (335)
Q Consensus 95 s~~GLl~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~ 167 (335)
--+.||++.-- .-.++|+|..|++-.+|-.+...- .|.+... .+.=||--.+++||++-..
T Consensus 236 ~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGi-IFpgGYyLqtGe~K~Fd~~----------- 303 (448)
T PF12458_consen 236 RVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGI-IFPGGYYLQTGEYKTFDTD----------- 303 (448)
T ss_pred ecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCce-EccCceEeccCCceeeccc-----------
Confidence 45667777752 237999999999988876654320 1111110 1122333234566654321
Q ss_pred CCCceEEEEEcCCCcceecCccccc-ccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCcc
Q 045559 168 NDSRQVFIYSFSDNSWRNFQGFEFG-MYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCL 246 (335)
Q Consensus 168 ~~~~~~~vyss~~~~W~~~~~~p~~-~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~ 246 (335)
.. .+.+. ...+| --..++|.+...... ...++.||+-+.+. .-|...
T Consensus 304 ------------~~------~l~F~r~vrSP------NGEDvLYvF~~~~~g-----~~~Ll~YN~I~k~v---~tPi~c 351 (448)
T PF12458_consen 304 ------------MD------GLEFERKVRSP------NGEDVLYVFYAREEG-----RYLLLPYNLIRKEV---ATPIIC 351 (448)
T ss_pred ------------CC------CceEEEEecCC------CCceEEEEEEECCCC-----cEEEEechhhhhhh---cCCeec
Confidence 11 11111 11111 112367877766543 67889998776543 333322
Q ss_pred ccCCCCeeEEEEeCCeEEEEEecC----CCCEEEEEEE
Q 045559 247 LEISPKHTVFGLYNDSLSFLVFDE----RESCFDIWTM 280 (335)
Q Consensus 247 ~~~~~~~~~l~~~~g~L~~~~~~~----~~~~~~IW~l 280 (335)
. ..-.--||.|+++.... ...-|+||.-
T Consensus 352 h------G~alf~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 352 H------GYALFEDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred c------ceeEecCCEEEEEecCCCCcceeccceeecC
Confidence 1 12344588888888762 2235777763
No 89
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=63.73 E-value=12 Score=26.70 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=13.6
Q ss_pred CCeEEEEeCCCCceeec
Q 045559 316 TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 316 ~~~l~~yd~~~~~~~~v 332 (335)
.++|+.|||+|++.+.+
T Consensus 36 ~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -EEEEEEETTTTEEEEE
T ss_pred CcCEEEEECCCCeEEEe
Confidence 35899999999998654
No 90
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.14 E-value=1.8e+02 Score=29.79 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=22.5
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECC--ccceee
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMS--DEVFEE 239 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~--~e~~~~ 239 (335)
.++.++|.+|.-+.. ..++++|.+ ++.|+-
T Consensus 189 TPlvvgg~lYv~t~~---------~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 189 TPLKVGDTLYLCTPH---------NKVIALDAATGKEKWKF 220 (764)
T ss_pred CCEEECCEEEEECCC---------CeEEEEECCCCcEEEEE
Confidence 489999999997653 379999976 455653
No 91
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=60.52 E-value=16 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=30.1
Q ss_pred CceEEEEecchh-hhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEE
Q 045559 106 GDEIALYNHATR-DLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIV 156 (335)
Q Consensus 106 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~ 156 (335)
...++++||.|| .|...- +.. ....+-+|+..+.|+||.+.
T Consensus 10 rA~V~~yd~~tKk~WvPs~--~~~--------~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPAS--KHA--------VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCC--CCc--------eeEEEEecCCCcEEEEEEec
Confidence 456899999996 775443 222 25788889999999999863
No 92
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=59.93 E-value=66 Score=30.50 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=26.2
Q ss_pred eeeEEEeeCCE-EEEEecCCeEEEEeCCCCceeecccC
Q 045559 299 DAPIGFWKNDT-FFIRSNTEELLLYDPNSEEIIDFQHK 335 (335)
Q Consensus 299 ~~~~~~~~~~~-il~~~~~~~l~~yd~~~~~~~~v~~~ 335 (335)
..|--...||+ |+++.. +.++.|||+++++++++|+
T Consensus 269 YY~R~~nsDGkrIvFq~~-GdIylydP~td~lekldI~ 305 (668)
T COG4946 269 YYPRNANSDGKRIVFQNA-GDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred ccccccCCCCcEEEEecC-CcEEEeCCCcCcceeeecC
Confidence 34444444677 566554 5799999999999999885
No 93
>PRK04922 tolB translocation protein TolB; Provisional
Probab=59.76 E-value=1.6e+02 Score=27.77 Aligned_cols=141 Identities=5% Similarity=-0.009 Sum_probs=70.2
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccc
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLL 247 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~ 247 (335)
...+.+++..++.-+.+...+- .... ....-+|. +++...... ...|..+|+.+.....+ ..+...
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g-~~~~----~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~~~~~~- 294 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRG-INGA----PSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTNHFGID- 294 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCC-CccC----ceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECccCCCCc-
Confidence 4467778887776655542221 1111 12333553 544443322 34688889887765544 211110
Q ss_pred cCCCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEE
Q 045559 248 EISPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLL 321 (335)
Q Consensus 248 ~~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~ 321 (335)
..... .-+|+ |++.... ....+||.++- .....++. . .-..... ..+.++|+ |++... ...+..
T Consensus 295 ----~~~~~-spDG~~l~f~sd~--~g~~~iy~~dl~~g~~~~lt-~-~g~~~~~-~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 295 ----TEPTW-APDGKSIYFTSDR--GGRPQIYRVAASGGSAERLT-F-QGNYNAR-ASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred ----cceEE-CCCCCEEEEEECC--CCCceEEEEECCCCCeEEee-c-CCCCccC-EEECCCCCEEEEEECCCCceeEEE
Confidence 11222 23555 4444322 33457888765 34443322 1 1111122 34566777 545433 236999
Q ss_pred EeCCCCceeec
Q 045559 322 YDPNSEEIIDF 332 (335)
Q Consensus 322 yd~~~~~~~~v 332 (335)
+|+++++.+.+
T Consensus 365 ~d~~~g~~~~L 375 (433)
T PRK04922 365 MDLSTGSVRTL 375 (433)
T ss_pred EECCCCCeEEC
Confidence 99998887654
No 94
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=57.80 E-value=23 Score=20.41 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=14.0
Q ss_pred EEEEEecCCeEEEEeCCCCce
Q 045559 309 TFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 309 ~il~~~~~~~l~~yd~~~~~~ 329 (335)
.+++...+..++.+|.+|++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSE
T ss_pred EEEEeCCCCEEEEEECCCCCE
Confidence 455555566778888777664
No 95
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=54.84 E-value=1.6e+02 Score=26.42 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=25.4
Q ss_pred ceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCcc
Q 045559 207 GACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCL 246 (335)
Q Consensus 207 G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~ 246 (335)
+.+||....+ ..|.++|..+..-+.+..|...
T Consensus 37 ~~L~w~DI~~--------~~i~r~~~~~g~~~~~~~p~~~ 68 (307)
T COG3386 37 GALLWVDILG--------GRIHRLDPETGKKRVFPSPGGF 68 (307)
T ss_pred CEEEEEeCCC--------CeEEEecCCcCceEEEECCCCc
Confidence 3578877653 4799999999988888888765
No 96
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=54.70 E-value=1.7e+02 Score=26.66 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=58.5
Q ss_pred eEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCC--C------EEEEEEEC------C-CCceeEE
Q 045559 225 YVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERE--S------CFDIWTMK------E-RYHWTKE 289 (335)
Q Consensus 225 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~--~------~~~IW~l~------~-~~~W~~~ 289 (335)
...+.||.++...... |...... ........+|+|+++...... . .+++-..+ . ...|.=.
T Consensus 86 ~~t~vyDt~t~av~~~--P~l~~pk--~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~ 161 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATG--PRLHSPK--RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWR 161 (342)
T ss_pred CCeEEEECCCCeEecc--CCCCCCC--cceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEE
Confidence 3588899888877744 4322211 223344457889999886411 1 55554433 1 3444333
Q ss_pred EEec--cCCce-------eeeEEEeeCCEEEEEecCC--eEEEEeCCCCceeecc
Q 045559 290 FSTT--PILAV-------DAPIGFWKNDTFFIRSNTE--ELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 290 ~~i~--~~~~~-------~~~~~~~~~~~il~~~~~~--~l~~yd~~~~~~~~v~ 333 (335)
. +. |+... ....++.++..|++..... .-+.||.++.+|++++
T Consensus 162 ~-LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 162 S-LPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred c-CCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 2 31 21111 3334455334477766544 6899999999999875
No 97
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=53.31 E-value=2.3e+02 Score=27.68 Aligned_cols=113 Identities=12% Similarity=0.209 Sum_probs=58.2
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCc--cceeee-cCCCcccc---CCCCeeEEEEeCCeEEEEEecCCCCE
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSD--EVFEEI-LGPNCLLE---ISPKHTVFGLYNDSLSFLVFDERESC 274 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~--e~~~~i-~~P~~~~~---~~~~~~~l~~~~g~L~~~~~~~~~~~ 274 (335)
.+++.+|.+|..+.. ..|.++|..+ +.|+.- ..|..... .......++..+|++++...+ .
T Consensus 64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--g-- 130 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--A-- 130 (527)
T ss_pred CCEEECCEEEEECCC---------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC--C--
Confidence 378899999986653 3699999875 455533 33322110 000112234556666554432 1
Q ss_pred EEEEEECC---CCceeEEEEecc--CCceeeeEEEeeCCEEEEEec------CCeEEEEeCCCCce
Q 045559 275 FDIWTMKE---RYHWTKEFSTTP--ILAVDAPIGFWKNDTFFIRSN------TEELLLYDPNSEEI 329 (335)
Q Consensus 275 ~~IW~l~~---~~~W~~~~~i~~--~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~ 329 (335)
.+..|+. +..|.....-.. ......|+.. ++.+++... ...|..||++|++.
T Consensus 131 -~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 131 -RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred -EEEEEECCCCCEEeecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCce
Confidence 2455544 456655321000 1111345443 556655432 35789999988764
No 98
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=53.21 E-value=71 Score=28.06 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=46.4
Q ss_pred EEeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeCCCCce
Q 045559 257 GLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 257 ~~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~ 329 (335)
+.-||.||.-+.. ..++.+|-|++.. ..|+. ........+++.++.--+....+..+-.+|+++++.
T Consensus 200 vSpDGslcasGgk--dg~~~LwdL~~~k---~lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 200 VSPDGSLCASGGK--DGEAMLWDLNEGK---NLYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred ECCCCCEEecCCC--CceEEEEEccCCc---eeEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 3448889988766 6789999999822 25666 344556667777776666666666688888887654
No 99
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=52.42 E-value=1.6e+02 Score=29.10 Aligned_cols=97 Identities=8% Similarity=0.191 Sum_probs=58.1
Q ss_pred ceEEEEEECCccceeee-cCCCccccCCCCeeEEEE-eCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCcee
Q 045559 224 HYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGL-YNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVD 299 (335)
Q Consensus 224 ~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~-~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~ 299 (335)
...+..|+++++++-++ ..-+.... .....++. .+|. ||++.. .+.+.+|.|+. ...|.+. + +....
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~~--~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~~~~~l~~-r---ln~~v 520 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAKC--PSISRLVVSSDGNYIAAIST---RGQIFVYNLETLESHLLKV-R---LNIDV 520 (691)
T ss_pred cceeEEEEecCcchhhhhccccccCC--CcceeEEEcCCCCEEEEEec---cceEEEEEcccceeecchh-c---cCcce
Confidence 44677788887777666 22221111 12223443 3565 888885 47899999998 4555441 1 11123
Q ss_pred eeEEEee--CCEEEEEecCCeEEEEeCCCCce
Q 045559 300 APIGFWK--NDTFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 300 ~~~~~~~--~~~il~~~~~~~l~~yd~~~~~~ 329 (335)
..+++.+ .+.+++...++.++-||.+..++
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~~~~l 552 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIEARNL 552 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecchhhh
Confidence 4444432 46688888888999999966544
No 100
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=52.07 E-value=21 Score=33.86 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=74.5
Q ss_pred eeeeecc--eEEEEeecCCCCCccCceEEEEEECCccceeeec----CCCccccCCCCeeEEEEeCCeEEEEEecC----
Q 045559 201 DCTYHNG--ACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEIL----GPNCLLEISPKHTVFGLYNDSLSFLVFDE---- 270 (335)
Q Consensus 201 ~~v~~~G--~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~----~P~~~~~~~~~~~~l~~~~g~L~~~~~~~---- 270 (335)
+.|+..| ++|..+.-.+.. .-.-.-+|+...+.|+++. .|.... +.+..+-.+..+|++++..-
T Consensus 265 QMV~~~~~~CiYLYGGWdG~~---~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs---CHRMVid~S~~KLYLlG~Y~~sS~ 338 (723)
T KOG2437|consen 265 QMVIDVQTECVYLYGGWDGTQ---DLADFWAYSVKENQWTCINRDTEGPGARS---CHRMVIDISRRKLYLLGRYLDSSV 338 (723)
T ss_pred eEEEeCCCcEEEEecCcccch---hHHHHHhhcCCcceeEEeecCCCCCcchh---hhhhhhhhhHhHHhhhhhcccccc
Confidence 4788888 899877554311 0123677889999999983 454332 24444555666677776542
Q ss_pred ---CCCEEEEEEECC-CCceeEEEEeccCC-----ceeeeEEEeeCCEEEEEec----------CCeEEEEeCCCCceee
Q 045559 271 ---RESCFDIWTMKE-RYHWTKEFSTTPIL-----AVDAPIGFWKNDTFFIRSN----------TEELLLYDPNSEEIID 331 (335)
Q Consensus 271 ---~~~~~~IW~l~~-~~~W~~~~~i~~~~-----~~~~~~~~~~~~~il~~~~----------~~~l~~yd~~~~~~~~ 331 (335)
....-++|+.|- +..|+..-.=+.-. -.-.-++|..+..++...+ -..|+.||.+...|+-
T Consensus 339 r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 339 RNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred ccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 234567899998 78898753221111 1133444443433444432 1358999999887753
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.53 E-value=2.1e+02 Score=26.86 Aligned_cols=113 Identities=7% Similarity=0.095 Sum_probs=64.0
Q ss_pred eeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECC
Q 045559 203 TYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE 282 (335)
Q Consensus 203 v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~ 282 (335)
+.=||.++-.+.. ...+=.+|+.+.. ..-++|+.-.. -..+.-.++.-+++...+ ...+-+|-|..
T Consensus 355 fHpDgLifgtgt~--------d~~vkiwdlks~~-~~a~Fpght~~----vk~i~FsENGY~Lat~ad-d~~V~lwDLRK 420 (506)
T KOG0289|consen 355 FHPDGLIFGTGTP--------DGVVKIWDLKSQT-NVAKFPGHTGP----VKAISFSENGYWLATAAD-DGSVKLWDLRK 420 (506)
T ss_pred EcCCceEEeccCC--------CceEEEEEcCCcc-ccccCCCCCCc----eeEEEeccCceEEEEEec-CCeEEEEEehh
Confidence 3335655554443 3366778888777 44477874332 223444434444444443 35599999987
Q ss_pred CCceeEEEEeccCCce--eeeEEEeeCCEEEEEe-cCCeEEEEeCCCCceeecc
Q 045559 283 RYHWTKEFSTTPILAV--DAPIGFWKNDTFFIRS-NTEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 283 ~~~W~~~~~i~~~~~~--~~~~~~~~~~~il~~~-~~~~l~~yd~~~~~~~~v~ 333 (335)
..=.+.+.+ +.- ..-+.+...|..+... .+-.++.|+.++++|+++.
T Consensus 421 -l~n~kt~~l---~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 421 -LKNFKTIQL---DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred -hcccceeec---cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 221233333 322 2334445557765544 3456888899999999874
No 102
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=50.58 E-value=1.9e+02 Score=29.38 Aligned_cols=57 Identities=16% Similarity=0.394 Sum_probs=41.4
Q ss_pred CCEEEEEEECC-------CCceeEEEEeccCCce-eeeEEEeeCCEEEEEecCCeEEEEeCCC-Cce
Q 045559 272 ESCFDIWTMKE-------RYHWTKEFSTTPILAV-DAPIGFWKNDTFFIRSNTEELLLYDPNS-EEI 329 (335)
Q Consensus 272 ~~~~~IW~l~~-------~~~W~~~~~i~~~~~~-~~~~~~~~~~~il~~~~~~~l~~yd~~~-~~~ 329 (335)
.+.+.||++.+ ...|..+..= .+... ....++.+||.++...-++.+-.||..+ +++
T Consensus 478 dg~~KiW~~~~~~n~~k~~s~W~c~~i~-sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l 543 (792)
T KOG1963|consen 478 DGDFKIWVFTDDSNIYKKSSNWTCKAIG-SYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNEL 543 (792)
T ss_pred CCeEEEEEEecccccCcCccceEEeeee-ccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhh
Confidence 57899999955 5789887533 44322 3445667789998888888999999988 444
No 103
>PRK03629 tolB translocation protein TolB; Provisional
Probab=49.66 E-value=2.3e+02 Score=26.66 Aligned_cols=141 Identities=6% Similarity=0.051 Sum_probs=69.5
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccc
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLL 247 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~ 247 (335)
...+.+++..++.=+.+...+-.. .. ....-||. +++...... ...|..+|+.+.....+ ..+...
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~-~~----~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~~~~~- 289 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHN-GA----PAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDGRSNN- 289 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCc-CC----eEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCCCCCc-
Confidence 346777787776554443221111 01 12333553 555543322 33688889987766554 222111
Q ss_pred cCCCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEE
Q 045559 248 EISPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLL 321 (335)
Q Consensus 248 ~~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~ 321 (335)
.... -.-+|+ |+..... ....+||.++. ...-.+. +- .... .....+.+||+ |++... ...++.
T Consensus 290 ----~~~~-wSPDG~~I~f~s~~--~g~~~Iy~~d~~~g~~~~l-t~-~~~~-~~~~~~SpDG~~Ia~~~~~~g~~~I~~ 359 (429)
T PRK03629 290 ----TEPT-WFPDSQNLAYTSDQ--AGRPQVYKVNINGGAPQRI-TW-EGSQ-NQDADVSSDGKFMVMVSSNGGQQHIAK 359 (429)
T ss_pred ----CceE-ECCCCCEEEEEeCC--CCCceEEEEECCCCCeEEe-ec-CCCC-ccCEEECCCCCEEEEEEccCCCceEEE
Confidence 1111 123555 5444433 34568888875 3332222 11 1111 12234466777 445443 245889
Q ss_pred EeCCCCceeec
Q 045559 322 YDPNSEEIIDF 332 (335)
Q Consensus 322 yd~~~~~~~~v 332 (335)
+|+++++.+.+
T Consensus 360 ~dl~~g~~~~L 370 (429)
T PRK03629 360 QDLATGGVQVL 370 (429)
T ss_pred EECCCCCeEEe
Confidence 99999887654
No 104
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=48.47 E-value=56 Score=31.07 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=18.8
Q ss_pred eeEEEeeCCEEEEEec-CCeEEEEeCCCCc
Q 045559 300 APIGFWKNDTFFIRSN-TEELLLYDPNSEE 328 (335)
Q Consensus 300 ~~~~~~~~~~il~~~~-~~~l~~yd~~~~~ 328 (335)
.-+++.++|.++.... .++|+.||++..+
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecccCC
Confidence 3445566777666654 5578888887653
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=48.13 E-value=1.8e+02 Score=24.91 Aligned_cols=92 Identities=8% Similarity=-0.029 Sum_probs=44.5
Q ss_pred EEEEEECCccce-eeecCCCccccCCCCeeEEE-EeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEE
Q 045559 226 VILSFDMSDEVF-EEILGPNCLLEISPKHTVFG-LYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIG 303 (335)
Q Consensus 226 ~i~~fD~~~e~~-~~i~~P~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~ 303 (335)
.|..+|+.+..- ..++.+... . .+. .-+|.+.++.... ...+.+|-++. ......+ +......-+.
T Consensus 96 ~l~~~d~~~~~~~~~~~~~~~~-----~--~~~~~~dg~~l~~~~~~-~~~~~~~d~~~---~~~~~~~-~~~~~~~~~~ 163 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPVGVEP-----E--GMAVSPDGKIVVNTSET-TNMAHFIDTKT---YEIVDNV-LVDQRPRFAE 163 (300)
T ss_pred eEEEEECCCCeEEeEeeCCCCc-----c--eEEECCCCCEEEEEecC-CCeEEEEeCCC---CeEEEEE-EcCCCccEEE
Confidence 688889876532 222221111 1 122 2356655554432 23344444332 2233333 2222223345
Q ss_pred EeeCCEEEE-Ee-cCCeEEEEeCCCCce
Q 045559 304 FWKNDTFFI-RS-NTEELLLYDPNSEEI 329 (335)
Q Consensus 304 ~~~~~~il~-~~-~~~~l~~yd~~~~~~ 329 (335)
+.++|+.++ .. .+..+..||+++.+.
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 566777554 33 356799999988654
No 106
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=47.02 E-value=45 Score=19.26 Aligned_cols=20 Identities=10% Similarity=0.312 Sum_probs=15.5
Q ss_pred CCEEEEEecCCeEEEEeCCC
Q 045559 307 NDTFFIRSNTEELLLYDPNS 326 (335)
Q Consensus 307 ~~~il~~~~~~~l~~yd~~~ 326 (335)
+|.+++...+..|+.+|++|
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 67788888888999999875
No 107
>PRK04043 tolB translocation protein TolB; Provisional
Probab=47.02 E-value=2.5e+02 Score=26.39 Aligned_cols=184 Identities=7% Similarity=0.030 Sum_probs=99.6
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...+++.|..|++-+.|...+.. .....+.|. +..-++.... .....+++++..++.++.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~---------~~~~~~SPD-G~~la~~~~~----------~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM---------LVVSDVSKD-GSKLLLTMAP----------KGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc---------EEeeEECCC-CCEEEEEEcc----------CCCcEEEEEECCCCcEEE
Confidence 45799999999998887643322 112234443 2333333311 224578888888888888
Q ss_pred cCcccccccccCCCceeeeecc-eEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCe-E
Q 045559 186 FQGFEFGMYDLDEVLDCTYHNG-ACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDS-L 263 (335)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G-~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~-L 263 (335)
+...+. ....+ ...-|| .+|+...... ...|...|+.+.....+-.-.. ... -..-+|+ |
T Consensus 272 LT~~~~-~d~~p----~~SPDG~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt~~g~------~~~-~~SPDG~~I 333 (419)
T PRK04043 272 ITNYPG-IDVNG----NFVEDDKRIVFVSDRLG------YPNIFMKKLNSGSVEQVVFHGK------NNS-SVSTYKNYI 333 (419)
T ss_pred cccCCC-ccCcc----EECCCCCEEEEEECCCC------CceEEEEECCCCCeEeCccCCC------cCc-eECCCCCEE
Confidence 753332 11111 333456 4777775543 3478888998877754421110 111 2233565 6
Q ss_pred EEEEecCC----CCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEEeCCCCceee
Q 045559 264 SFLVFDER----ESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLYDPNSEEIID 331 (335)
Q Consensus 264 ~~~~~~~~----~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~yd~~~~~~~~ 331 (335)
+++..... ....+||+++- ...+..+..- .....|. +.+||+ |++... ...|...++..++-..
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~-~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN---GVNQFPR-FSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC---CCcCCeE-ECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence 66554421 13378888875 4555433221 1112343 467888 555543 3358899988765443
No 108
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.67 E-value=2.3e+02 Score=25.87 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=66.1
Q ss_pred eEEEEEcCCCcceec-CcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccc--eeeecCCCcccc
Q 045559 172 QVFIYSFSDNSWRNF-QGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEV--FEEILGPNCLLE 248 (335)
Q Consensus 172 ~~~vyss~~~~W~~~-~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~--~~~i~~P~~~~~ 248 (335)
........+..|... ....-.....+ .+++.+|.+|.....+ .|.++|.++.. |+.-..+ ....
T Consensus 36 ~~~~~~~g~~~W~~~~~~~~~~~~~~~---~~~~~dg~v~~~~~~G---------~i~A~d~~~g~~~W~~~~~~-~~~~ 102 (370)
T COG1520 36 AVANNTSGTLLWSVSLGSGGGGIYAGP---APADGDGTVYVGTRDG---------NIFALNPDTGLVKWSYPLLG-AVAQ 102 (370)
T ss_pred EEEcccCcceeeeeecccCccceEecc---ccEeeCCeEEEecCCC---------cEEEEeCCCCcEEecccCcC-ccee
Confidence 344445566778643 11111112221 1489999999985543 69999998776 6544332 0000
Q ss_pred CCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECC---CCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeCC
Q 045559 249 ISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE---RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPN 325 (335)
Q Consensus 249 ~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~---~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~ 325 (335)
....+...+|+|++-... . .++.++. ...|.....- . .....+.. ..++.++....++.++..|.+
T Consensus 103 ---~~~~~~~~~G~i~~g~~~--g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~v-~~~~~v~~~s~~g~~~al~~~ 171 (370)
T COG1520 103 ---LSGPILGSDGKIYVGSWD--G---KLYALDASTGTLVWSRNVGG-S-PYYASPPV-VGDGTVYVGTDDGHLYALNAD 171 (370)
T ss_pred ---ccCceEEeCCeEEEeccc--c---eEEEEECCCCcEEEEEecCC-C-eEEecCcE-EcCcEEEEecCCCeEEEEEcc
Confidence 111223336665544443 1 5666666 3455553211 1 11122222 224555555455667777776
Q ss_pred CCce
Q 045559 326 SEEI 329 (335)
Q Consensus 326 ~~~~ 329 (335)
+.+.
T Consensus 172 tG~~ 175 (370)
T COG1520 172 TGTL 175 (370)
T ss_pred CCcE
Confidence 5443
No 109
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.43 E-value=2.5e+02 Score=25.89 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=52.2
Q ss_pred ceEEEEEECCccc-eeeecCCCccccCCCCeeEEE-EeCCe-EEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceee
Q 045559 224 HYVILSFDMSDEV-FEEILGPNCLLEISPKHTVFG-LYNDS-LSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDA 300 (335)
Q Consensus 224 ~~~i~~fD~~~e~-~~~i~~P~~~~~~~~~~~~l~-~~~g~-L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~ 300 (335)
...+..+|.++.+ ...++..... +..+. .-+|+ +++.. . .+.+.++=+.. . ..+.+| +...-..
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~------h~~~~~s~Dgr~~yv~~-r--dg~vsviD~~~-~--~~v~~i-~~G~~~~ 81 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAP------HAGLKFSPDGRYLYVAN-R--DGTVSVIDLAT-G--KVVATI-KVGGNPR 81 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTE------EEEEE-TT-SSEEEEEE-T--TSEEEEEETTS-S--SEEEEE-E-SSEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCCCc------eeEEEecCCCCEEEEEc-C--CCeEEEEECCc-c--cEEEEE-ecCCCcc
Confidence 4478888988754 3444543321 22233 34566 55554 3 35677776665 2 355667 4554455
Q ss_pred eEEEeeCCEEEEEe--cCCeEEEEeCCCCcee
Q 045559 301 PIGFWKNDTFFIRS--NTEELLLYDPNSEEII 330 (335)
Q Consensus 301 ~~~~~~~~~il~~~--~~~~l~~yd~~~~~~~ 330 (335)
-++++.||+.++.. ..+.+..+|.+|.+..
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 56777899866544 3678999999887653
No 110
>PLN02772 guanylate kinase
Probab=44.69 E-value=1.5e+02 Score=27.68 Aligned_cols=72 Identities=6% Similarity=0.108 Sum_probs=48.0
Q ss_pred EEEEeCCeEEEEEecCCC--CEEEEEEECC-CCceeEEEEec--cCCceeeeEEEeeCCEEEEEec----CCeEEEEeCC
Q 045559 255 VFGLYNDSLSFLVFDERE--SCFDIWTMKE-RYHWTKEFSTT--PILAVDAPIGFWKNDTFFIRSN----TEELLLYDPN 325 (335)
Q Consensus 255 ~l~~~~g~L~~~~~~~~~--~~~~IW~l~~-~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~----~~~l~~yd~~ 325 (335)
.....++++++++...+. ....+|++|. +..|+.--..+ |.+.-.+-.++..+++|++..+ +..++.....
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~ 108 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVD 108 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEcC
Confidence 457788999999975423 5788999999 88998754333 4444456666676777877664 2345555554
Q ss_pred C
Q 045559 326 S 326 (335)
Q Consensus 326 ~ 326 (335)
|
T Consensus 109 t 109 (398)
T PLN02772 109 T 109 (398)
T ss_pred C
Confidence 4
No 111
>PRK04922 tolB translocation protein TolB; Provisional
Probab=43.86 E-value=2.8e+02 Score=26.03 Aligned_cols=185 Identities=10% Similarity=0.046 Sum_probs=89.1
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...++++|..+++...+...+.. .....+.|.. +.-++.... .....+.+++..++.-+.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~---------~~~~~~SpDG-~~l~~~~s~----------~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI---------NGAPSFSPDG-RRLALTLSR----------DGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC---------ccCceECCCC-CEEEEEEeC----------CCCceEEEEECCCCCeEE
Confidence 45789999999887666433322 1234455533 222222211 123567788888776554
Q ss_pred cCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCe-E
Q 045559 186 FQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDS-L 263 (335)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~-L 263 (335)
+..... .... ....-+|. +++...... ...|..+|+.+.....+...... ...... .-+|+ |
T Consensus 287 lt~~~~-~~~~----~~~spDG~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt~~g~~----~~~~~~-SpDG~~I 350 (433)
T PRK04922 287 LTNHFG-IDTE----PTWAPDGKSIYFTSDRGG------RPQIYRVAASGGSAERLTFQGNY----NARASV-SPDGKKI 350 (433)
T ss_pred CccCCC-Cccc----eEECCCCCEEEEEECCCC------CceEEEEECCCCCeEEeecCCCC----ccCEEE-CCCCCEE
Confidence 432110 1111 12223554 444443321 33577788877666555321111 012222 22555 6
Q ss_pred EEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEEeCCCCceeec
Q 045559 264 SFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 264 ~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~yd~~~~~~~~v 332 (335)
++.... .....||+++- ..... .+..-.....| .+.+||+ |++... ...|+.+|++++.-+++
T Consensus 351 a~~~~~--~~~~~I~v~d~~~g~~~---~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 351 AMVHGS--GGQYRIAVMDLSTGSVR---TLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred EEEECC--CCceeEEEEECCCCCeE---ECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 665543 33344555443 24333 22111112333 4567877 455443 34699999987665554
No 112
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.00 E-value=3e+02 Score=26.15 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=73.7
Q ss_pred CceEEEEEcCCCccee-cCccccc-ccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccce-eee---cCC
Q 045559 170 SRQVFIYSFSDNSWRN-FQGFEFG-MYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVF-EEI---LGP 243 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~-~~~~p~~-~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~-~~i---~~P 243 (335)
..++.+|++.+.+=+. .. .+. .... ..+..+|.+...+.. ...|=.||+.+... +.+ +.|
T Consensus 47 S~rvqly~~~~~~~~k~~s--rFk~~v~s----~~fR~DG~LlaaGD~--------sG~V~vfD~k~r~iLR~~~ah~ap 112 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFS--RFKDVVYS----VDFRSDGRLLAAGDE--------SGHVKVFDMKSRVILRQLYAHQAP 112 (487)
T ss_pred ccEEEEEecchhhhhhhHH--hhccceeE----EEeecCCeEEEccCC--------cCcEEEeccccHHHHHHHhhccCc
Confidence 4579999998864322 11 111 1111 235556888776654 44788899655322 222 333
Q ss_pred CccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeC-CEEEEEec-CCeEEE
Q 045559 244 NCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKN-DTFFIRSN-TEELLL 321 (335)
Q Consensus 244 ~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~-~~il~~~~-~~~l~~ 321 (335)
- ........++.+.+.+.+ ...+.+|.+.. .. + ...+.-.....+-..+.+. +.|++... ++.+-.
T Consensus 113 v-------~~~~f~~~d~t~l~s~sD--d~v~k~~d~s~-a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 113 V-------HVTKFSPQDNTMLVSGSD--DKVVKYWDLST-AY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred e-------eEEEecccCCeEEEecCC--CceEEEEEcCC-cE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 2 223344455555555555 67899999997 33 3 3344223344554555443 44666544 678899
Q ss_pred EeCCCC
Q 045559 322 YDPNSE 327 (335)
Q Consensus 322 yd~~~~ 327 (335)
||.++.
T Consensus 181 ~DtR~~ 186 (487)
T KOG0310|consen 181 WDTRSL 186 (487)
T ss_pred EEeccC
Confidence 998876
No 113
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=42.78 E-value=49 Score=24.70 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=29.2
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEE
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIV 156 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~ 156 (335)
...+.+.||.||.|...-..+.. .+...+-.++..+.|.|+...
T Consensus 8 rA~Vm~~d~~tk~W~P~~~~~~~-------ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 8 RASVMVYDDSNKKWVPAGGGSQG-------FSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEEeeEEcCCCCcEEcCCCCCCC-------cceEEEEEcCCCCEEEEEEee
Confidence 34678999999985444222111 225667778888899999864
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.36 E-value=1.6e+02 Score=26.22 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=37.2
Q ss_pred EecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEEecCCeEEEEeCCCCceeecc
Q 045559 267 VFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSNTEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 267 ~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~~~~l~~yd~~~~~~~~v~ 333 (335)
...+ .+++.||.+++.+.=.-+-.. .+..-..-++-.++|. ++....++.+-.||+.+++...|+
T Consensus 45 A~SW-D~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 45 AGSW-DGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred eccc-CCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence 3344 578999999982211111111 1111111223234565 555566788999999999887765
No 115
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=41.01 E-value=2.9e+02 Score=25.43 Aligned_cols=186 Identities=10% Similarity=0.049 Sum_probs=88.4
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...++++|..|++...+...... .....+.|..+ .-++.. . ......+.+++.+++..+.
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~---------~~~~~~spDg~-~l~~~~-~---------~~~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGM---------NGAPAFSPDGS-KLAVSL-S---------KDGNPDIYVMDLDGKQLTR 272 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCC---------ccceEECCCCC-EEEEEE-C---------CCCCccEEEEECCCCCEEE
Confidence 35789999999876655443222 22345555432 222221 1 1223467777888776665
Q ss_pred cCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCe-E
Q 045559 186 FQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDS-L 263 (335)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~-L 263 (335)
+..... ....+ ...-+|. +++...... ...|..+|+.+.....+....... .... ..-+|+ |
T Consensus 273 l~~~~~-~~~~~----~~s~dg~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~~~~----~~~~-~spdg~~i 336 (417)
T TIGR02800 273 LTNGPG-IDTEP----SWSPDGKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRGGYN----ASPS-WSPDGDLI 336 (417)
T ss_pred CCCCCC-CCCCE----EECCCCCEEEEEECCCC------CceEEEEECCCCCEEEeecCCCCc----cCeE-ECCCCCEE
Confidence 532111 11011 1223554 555544332 336778888777665553221110 1111 233566 4
Q ss_pred EEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEEeCCCCceeec
Q 045559 264 SFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 264 ~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~yd~~~~~~~~v 332 (335)
++.... .....|++++-...|.+...- ......| .+..+|+ +++... ...+..++..++.-+++
T Consensus 337 ~~~~~~--~~~~~i~~~d~~~~~~~~l~~--~~~~~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 337 AFVHRE--GGGFNIAVMDLDGGGERVLTD--TGLDESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred EEEEcc--CCceEEEEEeCCCCCeEEccC--CCCCCCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 444433 345677777762233332211 1112233 3455666 444433 23466777766655554
No 116
>PF15408 PH_7: Pleckstrin homology domain
Probab=41.01 E-value=8.7 Score=26.89 Aligned_cols=25 Identities=36% Similarity=0.752 Sum_probs=20.8
Q ss_pred hhhhhhheeccccchhhhCChHhHH
Q 045559 11 VKSLLRFRCVCKSWYELFESPSFIS 35 (335)
Q Consensus 11 ~k~l~r~r~VcK~W~~li~sp~F~~ 35 (335)
++.+...+-|||+|....-+|+|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 4566777889999999999999853
No 117
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=40.66 E-value=28 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=16.5
Q ss_pred CCEEEEEecC--CeEEEEeCCCCceee
Q 045559 307 NDTFFIRSNT--EELLLYDPNSEEIID 331 (335)
Q Consensus 307 ~~~il~~~~~--~~l~~yd~~~~~~~~ 331 (335)
++.+=+..++ -+++.||+++|+++-
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~tNei~L 55 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDTNEITL 55 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCeEEEEEeCCCCCeEEE
Confidence 4555444232 368999999999864
No 118
>PRK10115 protease 2; Provisional
Probab=39.40 E-value=4.2e+02 Score=26.83 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=64.2
Q ss_pred eecceEEEEeecCCCCCccCceEEEEEECC-ccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecCCCCEEEEEEECC
Q 045559 204 YHNGACHWLVPFGAFHPLCCHYVILSFDMS-DEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE 282 (335)
Q Consensus 204 ~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~-~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~ 282 (335)
..++.+|..+..+.. ...|+..|+. .+.|..+-.+.... .-..+...++.|.+.... ...-.+++++.
T Consensus 277 ~~~~~ly~~tn~~~~-----~~~l~~~~~~~~~~~~~l~~~~~~~----~i~~~~~~~~~l~~~~~~--~g~~~l~~~~~ 345 (686)
T PRK10115 277 HYQHRFYLRSNRHGK-----NFGLYRTRVRDEQQWEELIPPRENI----MLEGFTLFTDWLVVEERQ--RGLTSLRQINR 345 (686)
T ss_pred eCCCEEEEEEcCCCC-----CceEEEecCCCcccCeEEECCCCCC----EEEEEEEECCEEEEEEEe--CCEEEEEEEcC
Confidence 445678877765432 5679999988 57887774442111 111334456677777776 45566777764
Q ss_pred -CCceeEEEEeccCC--ceeeeEEEe--eC-CEEEEEec----CCeEEEEeCCCCceeec
Q 045559 283 -RYHWTKEFSTTPIL--AVDAPIGFW--KN-DTFFIRSN----TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 283 -~~~W~~~~~i~~~~--~~~~~~~~~--~~-~~il~~~~----~~~l~~yd~~~~~~~~v 332 (335)
.. ....+ ++. .....+... .+ +.+++... ...++.||+++++++.+
T Consensus 346 ~~~---~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l 401 (686)
T PRK10115 346 KTR---EVIGI-AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVL 401 (686)
T ss_pred CCC---ceEEe-cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEE
Confidence 22 22344 321 112222222 22 44655443 45799999999877654
No 119
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=38.47 E-value=3.2e+02 Score=25.16 Aligned_cols=141 Identities=6% Similarity=0.013 Sum_probs=67.9
Q ss_pred ceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccC
Q 045559 171 RQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEI 249 (335)
Q Consensus 171 ~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~ 249 (335)
..+.+++..++.-+.+...+-... . ....-+|. +++...... ...|..+|+.+.....+.......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~-~----~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~~~~~-- 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNG-A----PAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNGPGID-- 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-c----eEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCCCCCC--
Confidence 567888888776554432211100 1 12233553 444333221 346888898877665552111111
Q ss_pred CCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEecCC---eEEEEe
Q 045559 250 SPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSNTE---ELLLYD 323 (335)
Q Consensus 250 ~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~~~---~l~~yd 323 (335)
..... .-+|+ |++.... ....+||.++- ...+.++. . .......+ .+.++|+ +++..... .++.+|
T Consensus 281 --~~~~~-s~dg~~l~~~s~~--~g~~~iy~~d~~~~~~~~l~-~-~~~~~~~~-~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 281 --TEPSW-SPDGKSIAFTSDR--GGSPQIYMMDADGGEVRRLT-F-RGGYNASP-SWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred --CCEEE-CCCCCEEEEEECC--CCCceEEEEECCCCCEEEee-c-CCCCccCe-EECCCCCEEEEEEccCCceEEEEEe
Confidence 11111 12565 4444332 23346777665 34443321 1 11112233 3456776 44444432 799999
Q ss_pred CCCCceeec
Q 045559 324 PNSEEIIDF 332 (335)
Q Consensus 324 ~~~~~~~~v 332 (335)
+.++.++.+
T Consensus 353 ~~~~~~~~l 361 (417)
T TIGR02800 353 LDGGGERVL 361 (417)
T ss_pred CCCCCeEEc
Confidence 998776544
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=38.37 E-value=1e+02 Score=29.07 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCEEEEEEECC-CCceeEEEEeccCCce-eeeEEEeeCCE-EEEE-ecCCeEEEEeCCCCceeecc
Q 045559 272 ESCFDIWTMKE-RYHWTKEFSTTPILAV-DAPIGFWKNDT-FFIR-SNTEELLLYDPNSEEIIDFQ 333 (335)
Q Consensus 272 ~~~~~IW~l~~-~~~W~~~~~i~~~~~~-~~~~~~~~~~~-il~~-~~~~~l~~yd~~~~~~~~v~ 333 (335)
.+.+.|+.++. .. .++..| .+... ..-..+.++|. .++. ...+.++.||+++.+++++.
T Consensus 234 d~~lrifqvDGk~N--~~lqS~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVN--PKLQSI-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred CCcEEEEEecCccC--hhheee-eeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 45677777776 22 244555 33321 23344556777 5444 44566899999999988764
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=36.10 E-value=4.1e+02 Score=25.67 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=26.5
Q ss_pred eeecceEEEEeecCCCCC--ccCceEEEEEECCccceeeecCCCccc
Q 045559 203 TYHNGACHWLVPFGAFHP--LCCHYVILSFDMSDEVFEEILGPNCLL 247 (335)
Q Consensus 203 v~~~G~~ywl~~~~~~~~--~~~~~~i~~fD~~~e~~~~i~~P~~~~ 247 (335)
-.++|-+|-|+.-+..+- ....+.|+.-|-.=.+-+++.+|...+
T Consensus 284 ~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred eecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcC
Confidence 366777777664332110 001457888885555667788887654
No 122
>PRK00178 tolB translocation protein TolB; Provisional
Probab=35.69 E-value=3.7e+02 Score=25.05 Aligned_cols=142 Identities=8% Similarity=0.033 Sum_probs=70.7
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCcccc
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLE 248 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~ 248 (335)
...+.+++..++.-+.+...+- ....+ ...-||. +++...... ...|..+|+.+.....+.-.....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g-~~~~~----~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~- 289 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG-LNGAP----AWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTNHPAID- 289 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC-CcCCe----EECCCCCEEEEEEccCC------CceEEEEECCCCCeEEcccCCCCc-
Confidence 3467888888876665542221 11111 2233554 444433322 346888899888776552211111
Q ss_pred CCCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEE
Q 045559 249 ISPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLY 322 (335)
Q Consensus 249 ~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~y 322 (335)
.... ..-+|+ |++.... ....+||.++- ...+.++. . ... ......+.++|+ |++... ...|+.+
T Consensus 290 ---~~~~-~spDg~~i~f~s~~--~g~~~iy~~d~~~g~~~~lt-~-~~~-~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 290 ---TEPF-WGKDGRTLYFTSDR--GGKPQIYKVNVNGGRAERVT-F-VGN-YNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred ---CCeE-ECCCCCEEEEEECC--CCCceEEEEECCCCCEEEee-c-CCC-CccceEECCCCCEEEEEEccCCceEEEEE
Confidence 1122 223555 5554432 33456777664 35554432 1 111 112234456766 555443 2358999
Q ss_pred eCCCCceeec
Q 045559 323 DPNSEEIIDF 332 (335)
Q Consensus 323 d~~~~~~~~v 332 (335)
|+++++.+.+
T Consensus 361 dl~tg~~~~l 370 (430)
T PRK00178 361 DLQRGSVRIL 370 (430)
T ss_pred ECCCCCEEEc
Confidence 9998877654
No 123
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=33.89 E-value=1.3e+02 Score=27.90 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=48.9
Q ss_pred ceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCeEEEEEecC--CCCEEEEEEECC--CCceeEEEEeccCCce
Q 045559 224 HYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSFLVFDE--RESCFDIWTMKE--RYHWTKEFSTTPILAV 298 (335)
Q Consensus 224 ~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~--~~~~~~IW~l~~--~~~W~~~~~i~~~~~~ 298 (335)
.+.|+..|+.+.+...+ .-.... .+....-.+..|.++|.+. +.-.-.||.++. ...|....+. +....
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wl-----gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~ 240 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWL-----GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESV 240 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-E-----EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEE
T ss_pred CceEEEEECCCCceeEEEecCccc-----cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCccc
Confidence 46899999999888777 434333 2344444566677787764 222346899998 3344332222 22223
Q ss_pred eeeEEEeeCCE-EEEEe--c---CCeEEEEeCCCCcee
Q 045559 299 DAPIGFWKNDT-FFIRS--N---TEELLLYDPNSEEII 330 (335)
Q Consensus 299 ~~~~~~~~~~~-il~~~--~---~~~l~~yd~~~~~~~ 330 (335)
.....+ .||. |++.. . ..-+..||++|.+-+
T Consensus 241 gHEfw~-~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 241 GHEFWV-PDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEEE--TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred cccccc-CCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 344443 3555 54432 1 234899999987544
No 124
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=33.00 E-value=3.1e+02 Score=26.56 Aligned_cols=55 Identities=13% Similarity=0.258 Sum_probs=33.4
Q ss_pred CEEEEEEECCCCceeEE-EEeccCCceeeeEEEeeCCEEEEEec-CCeEEEEeCCCCce
Q 045559 273 SCFDIWTMKERYHWTKE-FSTTPILAVDAPIGFWKNDTFFIRSN-TEELLLYDPNSEEI 329 (335)
Q Consensus 273 ~~~~IW~l~~~~~W~~~-~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~~~~~ 329 (335)
..+.|+.|...+. ..+ -.+ +.+.-..-+...+|+..+...+ .++++.||..+++.
T Consensus 465 gkvhvysl~g~~l-~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 465 GKVHVYSLSGDEL-KEEAKLL-EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ceEEEEEecCCcc-cceeeee-cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 4466666665111 111 112 2333355667778888877766 56799999988765
No 125
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.19 E-value=4.4e+02 Score=24.89 Aligned_cols=125 Identities=12% Similarity=0.116 Sum_probs=65.9
Q ss_pred CCCceEEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCcc-ceeeecCCCcc
Q 045559 168 NDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDE-VFEEILGPNCL 246 (335)
Q Consensus 168 ~~~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e-~~~~i~~P~~~ 246 (335)
...-.+.||+++... .+..+|-..... ..+-+...=||++.... ...|..+|+.+. -|..++++...
T Consensus 366 t~d~~vkiwdlks~~--~~a~Fpght~~v----k~i~FsENGY~Lat~ad------d~~V~lwDLRKl~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQT--NVAKFPGHTGPV----KAISFSENGYWLATAAD------DGSVKLWDLRKLKNFKTIQLDEKK 433 (506)
T ss_pred CCCceEEEEEcCCcc--ccccCCCCCCce----eEEEeccCceEEEEEec------CCeEEEEEehhhcccceeeccccc
Confidence 344567777776654 333333211111 13333334499887654 336999999765 45556777653
Q ss_pred ccCCCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccC-CceeeeEEEeeCCEEEEEe
Q 045559 247 LEISPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPI-LAVDAPIGFWKNDTFFIRS 314 (335)
Q Consensus 247 ~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~-~~~~~~~~~~~~~~il~~~ 314 (335)
+. .... ..--|. |.+. .+.+.|+..+. ..+|++.-.. +. .....-+.+.++..++...
T Consensus 434 ~v---~s~~-fD~SGt~L~~~-----g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 434 EV---NSLS-FDQSGTYLGIA-----GSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred cc---eeEE-EcCCCCeEEee-----cceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeec
Confidence 21 1111 112222 3332 35688888887 7899997655 32 2234444444444444443
No 126
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.80 E-value=3.4e+02 Score=25.45 Aligned_cols=65 Identities=9% Similarity=0.247 Sum_probs=37.7
Q ss_pred EEeCCeEEEEEecCCCCEEEEEEECC--CCceeEEEEeccCCceeeeEEEeeCCE-EEEEecCCeEEEEeCCCC
Q 045559 257 GLYNDSLSFLVFDERESCFDIWTMKE--RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSNTEELLLYDPNSE 327 (335)
Q Consensus 257 ~~~~g~L~~~~~~~~~~~~~IW~l~~--~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~~~~l~~yd~~~~ 327 (335)
+-+=+...+++... ...+..|-++. .+.|.-+..- . ..=+++..||+ +++...+.++..||.++.
T Consensus 319 ~W~pDg~~~V~Gs~-dr~i~~wdlDgn~~~~W~gvr~~----~-v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 319 AWCPDGFRFVTGSP-DRTIIMWDLDGNILGNWEGVRDP----K-VHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred EEccCCceeEecCC-CCcEEEecCCcchhhcccccccc----e-eEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 33333344555543 46788899888 6778654321 1 22345556666 555566667777777654
No 127
>PRK01742 tolB translocation protein TolB; Provisional
Probab=31.17 E-value=4.5e+02 Score=24.64 Aligned_cols=139 Identities=6% Similarity=-0.033 Sum_probs=66.6
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCcccc
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLE 248 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~ 248 (335)
...+.+++.+++.-+.+...+-. ... ....-||. +.+...... ...|..+|+.+.....+.. ....
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~-~~~----~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~--~~~~ 293 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGH-NGA----PAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTS--GAGN 293 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCc-cCc----eeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeecc--CCCC
Confidence 34567777777654443322110 001 12233554 444332221 3457788887766554421 1110
Q ss_pred CCCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCEEE-EEecCCeEEEEeCCC
Q 045559 249 ISPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFF-IRSNTEELLLYDPNS 326 (335)
Q Consensus 249 ~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~il-~~~~~~~l~~yd~~~ 326 (335)
..... -.-+|+ |+..... ....+||.++....... .+ .... . ...+.+||+.+ +... ..++.+|+.+
T Consensus 294 --~~~~~-wSpDG~~i~f~s~~--~g~~~I~~~~~~~~~~~--~l-~~~~-~-~~~~SpDG~~ia~~~~-~~i~~~Dl~~ 362 (429)
T PRK01742 294 --NTEPS-WSPDGQSILFTSDR--SGSPQVYRMSASGGGAS--LV-GGRG-Y-SAQISADGKTLVMING-DNVVKQDLTS 362 (429)
T ss_pred --cCCEE-ECCCCCEEEEEECC--CCCceEEEEECCCCCeE--Ee-cCCC-C-CccCCCCCCEEEEEcC-CCEEEEECCC
Confidence 01122 234565 5544332 45678999876222222 22 1111 1 23446677744 4444 4677899988
Q ss_pred Cceeec
Q 045559 327 EEIIDF 332 (335)
Q Consensus 327 ~~~~~v 332 (335)
++++.+
T Consensus 363 g~~~~l 368 (429)
T PRK01742 363 GSTEVL 368 (429)
T ss_pred CCeEEe
Confidence 876543
No 128
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=30.81 E-value=1.7e+02 Score=26.45 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=40.4
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCeEEEEEecC
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSFLVFDE 270 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~ 270 (335)
++-..+|.+|.+... ...+.++|.++.++..+ .+|..... |+-. |++.+++.+.
T Consensus 207 SPRWhdgrLwvldsg--------tGev~~vD~~~G~~e~Va~vpG~~rG-------L~f~-G~llvVgmSk 261 (335)
T TIGR03032 207 SPRWYQGKLWLLNSG--------RGELGYVDPQAGKFQPVAFLPGFTRG-------LAFA-GDFAFVGLSK 261 (335)
T ss_pred CCcEeCCeEEEEECC--------CCEEEEEcCCCCcEEEEEECCCCCcc-------ccee-CCEEEEEecc
Confidence 478899998877654 45899999999999888 88875432 3333 8888887764
No 129
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=30.61 E-value=4.7e+02 Score=26.41 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=35.0
Q ss_pred EEEEEECCccceeeecCCCccccCCCCeeEEE-EeCCe-EEEEEecCCCCEEEEEEECC---CCceeEEEEe
Q 045559 226 VILSFDMSDEVFEEILGPNCLLEISPKHTVFG-LYNDS-LSFLVFDERESCFDIWTMKE---RYHWTKEFST 292 (335)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~-~~~g~-L~~~~~~~~~~~~~IW~l~~---~~~W~~~~~i 292 (335)
.|.-.|+++.+.. +|......+.....++ +.++. |..++. ..-+.+|.++. -.+|.-.|+-
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~r---s~llrv~~L~tgk~irswKa~He~ 106 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASR---SQLLRVWSLPTGKLIRSWKAIHEA 106 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeec---cceEEEEEcccchHhHhHhhccCC
Confidence 5777888887765 4443332211222333 33443 444443 57899999998 5677665544
No 130
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=30.01 E-value=6e+02 Score=25.74 Aligned_cols=190 Identities=14% Similarity=0.181 Sum_probs=97.8
Q ss_pred ccccccceEEEeecCceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCc
Q 045559 92 FRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSR 171 (335)
Q Consensus 92 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 171 (335)
+.-+.||=.|+......+.+..-.|++-. +|..... -....-.+..+|. +. +++...+ ..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~~e-----d~d~ita~~l~~d-~~-~L~~a~r------------s~ 84 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSGSNE-----DEDEITALALTPD-EE-VLVTASR------------SQ 84 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee-cccCCcc-----chhhhheeeecCC-cc-EEEEeec------------cc
Confidence 44577888777765677788888888765 5554433 1111334444543 23 3333322 44
Q ss_pred eEEEEEcCCC----cceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cC-CCc
Q 045559 172 QVFIYSFSDN----SWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LG-PNC 245 (335)
Q Consensus 172 ~~~vyss~~~----~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~-P~~ 245 (335)
..++|++.++ +|+.+..-|.- .+-+++.-.-++..+. ...+..-|..++..+.- +. |..
T Consensus 85 llrv~~L~tgk~irswKa~He~Pvi---------~ma~~~~g~LlAtgga------D~~v~VWdi~~~~~th~fkG~gGv 149 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAPVI---------TMAFDPTGTLLATGGA------DGRVKVWDIKNGYCTHSFKGHGGV 149 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCCeE---------EEEEcCCCceEEeccc------cceEEEEEeeCCEEEEEecCCCce
Confidence 6789998875 68875433432 1222222233444433 34566677776655443 43 332
Q ss_pred cccCCCCeeEEEEeCCe-E-EEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEEecCCeEEEE
Q 045559 246 LLEISPKHTVFGLYNDS-L-SFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSNTEELLLY 322 (335)
Q Consensus 246 ~~~~~~~~~~l~~~~g~-L-~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~~~~l~~y 322 (335)
+ .....++. . -++........+.+|-+.+... ..+++........-+++..|+. ++-..+++.+.+|
T Consensus 150 V--------ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 150 V--------SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred E--------EEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 2 12222222 1 1111111367888999986111 1122211111234455555555 6667777788999
Q ss_pred eCCC
Q 045559 323 DPNS 326 (335)
Q Consensus 323 d~~~ 326 (335)
|+.+
T Consensus 220 d~~~ 223 (775)
T KOG0319|consen 220 DLVQ 223 (775)
T ss_pred ehhh
Confidence 9854
No 131
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=29.74 E-value=3.4e+02 Score=23.77 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=39.6
Q ss_pred eeeecceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecC
Q 045559 202 CTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDE 270 (335)
Q Consensus 202 ~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~ 270 (335)
--+.+|++|..+...... .....+..-+...+.|+.+..|..+.. ...-.+..++.|+|+..++
T Consensus 196 vkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~slrfp~nvHh---tnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 196 VKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSLRFPNNVHH---TNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp EEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEEE-TT---S---S---EEEETTEEEEEEE-S
T ss_pred hhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhccccccccc---cCCCceeeCCEEEEEeccc
Confidence 468899999987543210 002357777888999999999977654 4566788899999999875
No 132
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.24 E-value=4.8e+02 Score=24.04 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=38.1
Q ss_pred CCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCEEEE-EecCCeEEEEeCCCCc
Q 045559 272 ESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFI-RSNTEELLLYDPNSEE 328 (335)
Q Consensus 272 ~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~-~~~~~~l~~yd~~~~~ 328 (335)
...|.+|-+.- . ..+.++..+....+-+++++.|+.++ ..+++.|-+||+++++
T Consensus 313 DktIk~wdv~t-g--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 313 DKTIKIWDVST-G--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred cceEEEEeccC-C--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 57899999886 3 24455534455566677788889665 4567789999998764
No 133
>PRK04792 tolB translocation protein TolB; Provisional
Probab=27.98 E-value=5.2e+02 Score=24.43 Aligned_cols=142 Identities=7% Similarity=0.001 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCcceecCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCcccc
Q 045559 170 SRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLE 248 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~ 248 (335)
...+++++..++.-+.+...+-. ... ....-+|. +++....+. ...|..+|+++.+...+.-.....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-~~~----~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~~~~~~- 308 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-NGA----PRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITRHRAID- 308 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-cCC----eeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECccCCCCc-
Confidence 34677778777655444322211 001 12233554 444433322 447888999887766552111110
Q ss_pred CCCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEE
Q 045559 249 ISPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLY 322 (335)
Q Consensus 249 ~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~y 322 (335)
..... .-+|+ |++.... ....+||.++- ...+.++. .. -.....| .+.+||+ |++... ...++.+
T Consensus 309 ---~~p~w-SpDG~~I~f~s~~--~g~~~Iy~~dl~~g~~~~Lt-~~-g~~~~~~-~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 309 ---TEPSW-HPDGKSLIFTSER--GGKPQIYRVNLASGKVSRLT-FE-GEQNLGG-SITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred ---cceEE-CCCCCEEEEEECC--CCCceEEEEECCCCCEEEEe-cC-CCCCcCe-eECCCCCEEEEEEecCCceEEEEE
Confidence 11111 23565 5444332 34467888875 45554432 11 1111223 4466776 545433 2368899
Q ss_pred eCCCCceeec
Q 045559 323 DPNSEEIIDF 332 (335)
Q Consensus 323 d~~~~~~~~v 332 (335)
|+++++.+.+
T Consensus 380 dl~~g~~~~l 389 (448)
T PRK04792 380 DLETGAMQVL 389 (448)
T ss_pred ECCCCCeEEc
Confidence 9999877654
No 134
>PRK02889 tolB translocation protein TolB; Provisional
Probab=27.58 E-value=5.2e+02 Score=24.22 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=51.0
Q ss_pred ceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeee
Q 045559 224 HYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAP 301 (335)
Q Consensus 224 ~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~ 301 (335)
...|..+|+.+.....+.-..... .... -.-+|+ |+.. ... ....+||.++. .....+.. . .-.....|
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~----~~~~-wSpDG~~l~f~-s~~-~g~~~Iy~~~~~~g~~~~lt-~-~g~~~~~~ 333 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGID----TEPF-FSPDGRSIYFT-SDR-GGAPQIYRMPASGGAAQRVT-F-TGSYNTSP 333 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCC----cCeE-EcCCCCEEEEE-ecC-CCCcEEEEEECCCCceEEEe-c-CCCCcCce
Confidence 346888888766654441111111 1222 233566 5444 332 34578999875 33333322 2 11112233
Q ss_pred EEEeeCCE-EEEEecC---CeEEEEeCCCCceeec
Q 045559 302 IGFWKNDT-FFIRSNT---EELLLYDPNSEEIIDF 332 (335)
Q Consensus 302 ~~~~~~~~-il~~~~~---~~l~~yd~~~~~~~~v 332 (335)
.+.+||+ |++.... ..++.+|+.+++.+.+
T Consensus 334 -~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 334 -RISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred -EECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 4566777 4454432 3699999998877654
No 135
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=26.72 E-value=6.1e+02 Score=24.74 Aligned_cols=142 Identities=13% Similarity=0.191 Sum_probs=81.6
Q ss_pred ceEEEeec-----------CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccc
Q 045559 98 GLFIMFIG-----------GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKV 166 (335)
Q Consensus 98 GLl~~~~~-----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~ 166 (335)
||||+... ...+++.+-- ++-..+|..... . ..-..+.+.+.+|-||..+.
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~G-----P---Vhdv~W~~s~~EF~VvyGfM--------- 292 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEG-----P---VHDVTWSPSGREFAVVYGFM--------- 292 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCC-----C---ceEEEECCCCCEEEEEEecc---------
Confidence 78877761 3356666554 555556555333 1 34566777778899888754
Q ss_pred cCCCceEEEEEcCCCcceecCcccccccccCCCceeeee--cceEEEEeecCCCCCccCceEEEEEECCccceeeecCCC
Q 045559 167 LNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYH--NGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPN 244 (335)
Q Consensus 167 ~~~~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~--~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~ 244 (335)
...+-||+++.+-=-..+.-|. ..++. +|.+-.++..++- ...|..+|+.+. -.|.-+.
T Consensus 293 ---PAkvtifnlr~~~v~df~egpR---------N~~~fnp~g~ii~lAGFGNL-----~G~mEvwDv~n~--K~i~~~~ 353 (566)
T KOG2315|consen 293 ---PAKVTIFNLRGKPVFDFPEGPR---------NTAFFNPHGNIILLAGFGNL-----PGDMEVWDVPNR--KLIAKFK 353 (566)
T ss_pred ---cceEEEEcCCCCEeEeCCCCCc---------cceEECCCCCEEEEeecCCC-----CCceEEEeccch--hhccccc
Confidence 4567888887763222221121 13333 4677788888764 568999998773 2222222
Q ss_pred ccccCCCCeeEEEEe--CCeEEEEEecC----CCCEEEEEEECC
Q 045559 245 CLLEISPKHTVFGLY--NDSLSFLVFDE----RESCFDIWTMKE 282 (335)
Q Consensus 245 ~~~~~~~~~~~l~~~--~g~L~~~~~~~----~~~~~~IW~l~~ 282 (335)
. .+..+++. ||+-.+..... -.+.+.||....
T Consensus 354 a------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 354 A------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred c------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 1 12234433 66643333331 457788998876
No 136
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=26.28 E-value=3.6e+02 Score=22.30 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=31.0
Q ss_pred CEEEEEEECC-CCceeEEEEeccCCceeeeEE-EeeC-CEEEEEe--------cCCeEEEEeCCCCceeec
Q 045559 273 SCFDIWTMKE-RYHWTKEFSTTPILAVDAPIG-FWKN-DTFFIRS--------NTEELLLYDPNSEEIIDF 332 (335)
Q Consensus 273 ~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~-~~~~-~~il~~~--------~~~~l~~yd~~~~~~~~v 332 (335)
+.=.||+.+- ..+|... .|++...-..|-. .|-| ..|++.- .++.|+.|++.|++.+++
T Consensus 86 giGkIYIkn~~~~~~~~L-~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~l 155 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSL-QIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTEL 155 (200)
T ss_pred cceeEEEEecCCCceEEE-EecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEe
Confidence 3445677775 4555332 2433322223332 2434 3454332 245799999999887765
No 137
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.25 E-value=4e+02 Score=22.47 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=43.7
Q ss_pred eeEEEEeCCe-EEEEEecCCCCEEEEEEECC-CCceeEEEEecc-CC--------c--eeeeEEEeeCCEEEEEecCCeE
Q 045559 253 HTVFGLYNDS-LSFLVFDERESCFDIWTMKE-RYHWTKEFSTTP-IL--------A--VDAPIGFWKNDTFFIRSNTEEL 319 (335)
Q Consensus 253 ~~~l~~~~g~-L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~-~~--------~--~~~~~~~~~~~~il~~~~~~~l 319 (335)
......++|. |.+++. .+.+.+|-++. +..-.. -.|.| +. . -..-+.+.++|..++...++..
T Consensus 14 ~~~~l~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~ 89 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITS---SGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDS 89 (219)
T ss_pred ceEEEEeCCCEEEEEeC---CCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCE
Confidence 3445667777 444443 57899999987 110000 01111 11 0 1222344557775554444578
Q ss_pred EEEeCCCCceeecc
Q 045559 320 LLYDPNSEEIIDFQ 333 (335)
Q Consensus 320 ~~yd~~~~~~~~v~ 333 (335)
+.||.+-+.|.+|.
T Consensus 90 y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 90 YSYSPDLGCWIRVS 103 (219)
T ss_pred EEeccccceeEEec
Confidence 99999999998874
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.79 E-value=5e+02 Score=23.46 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=45.9
Q ss_pred eeeeecceEEEEeecCCCCCccCceEEEEEECCccce-eeecCCCccccCCCCeeEEEEeCCeE---EEEEecCCCCEEE
Q 045559 201 DCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVF-EEILGPNCLLEISPKHTVFGLYNDSL---SFLVFDERESCFD 276 (335)
Q Consensus 201 ~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~~~~l~~~~g~L---~~~~~~~~~~~~~ 276 (335)
.++-++|-. ++..+. ...|-.||+.+..= ..+.-|.. .+.-....+.+ .++...+ .+.|.
T Consensus 47 tavAVs~~~--~aSGss------DetI~IYDm~k~~qlg~ll~Hag-------sitaL~F~~~~S~shLlS~sd-DG~i~ 110 (362)
T KOG0294|consen 47 TALAVSGPY--VASGSS------DETIHIYDMRKRKQLGILLSHAG-------SITALKFYPPLSKSHLLSGSD-DGHII 110 (362)
T ss_pred eEEEeccee--EeccCC------CCcEEEEeccchhhhcceecccc-------ceEEEEecCCcchhheeeecC-CCcEE
Confidence 467777752 222222 34688899876643 33333321 11111112222 3444443 57888
Q ss_pred EEEECCCCceeEEEEeccCCceeeeEEEeeCCEE
Q 045559 277 IWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTF 310 (335)
Q Consensus 277 IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~i 310 (335)
||..+. |....++.+...-..-+.+++.|++
T Consensus 111 iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KL 141 (362)
T KOG0294|consen 111 IWRVGS---WELLKSLKAHKGQVTDLSIHPSGKL 141 (362)
T ss_pred EEEcCC---eEEeeeecccccccceeEecCCCce
Confidence 998765 8887777544332333444444444
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=25.59 E-value=5.6e+02 Score=23.97 Aligned_cols=185 Identities=10% Similarity=0.048 Sum_probs=84.0
Q ss_pred CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559 106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN 185 (335)
Q Consensus 106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 185 (335)
...++++|..+++...+...+.. .....+.|..+ +++.... ......+.+++..++..+.
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~---------~~~~~~SPDG~--~la~~~~---------~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGS---------NSAPAWSPDGR--TLAVALS---------RDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCC---------ccceEECCCCC--EEEEEEc---------cCCCceEEEEECCCCCcEE
Confidence 34689999999887766543322 22344555332 2222211 1123456666666665554
Q ss_pred cCcccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCe-E
Q 045559 186 FQGFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDS-L 263 (335)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~-L 263 (335)
+.... .....+ ...-+|. +++....+. ...|..+|+.+.....+....... ....+ .-+|+ |
T Consensus 279 lt~~~-~~~~~~----~wSpDG~~l~f~s~~~g------~~~Iy~~~~~~g~~~~lt~~g~~~----~~~~~-SpDG~~I 342 (427)
T PRK02889 279 LTQSS-GIDTEP----FFSPDGRSIYFTSDRGG------APQIYRMPASGGAAQRVTFTGSYN----TSPRI-SPDGKLL 342 (427)
T ss_pred CCCCC-CCCcCe----EEcCCCCEEEEEecCCC------CcEEEEEECCCCceEEEecCCCCc----CceEE-CCCCCEE
Confidence 43211 111111 2233554 444433221 346777887776655553222111 12222 23565 5
Q ss_pred EEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCE-EEEEec---CCeEEEEeCCCCceee
Q 045559 264 SFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDT-FFIRSN---TEELLLYDPNSEEIID 331 (335)
Q Consensus 264 ~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~---~~~l~~yd~~~~~~~~ 331 (335)
++.........+.+|-++. ..... +..-.....| .+.+||+ |++..+ ...+..+|..++.-+.
T Consensus 343 a~~s~~~g~~~I~v~d~~~-g~~~~---lt~~~~~~~p-~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~ 409 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLAT-GQVTA---LTDTTRDESP-SFAPNGRYILYATQQGGRSVLAAVSSDGRIKQR 409 (427)
T ss_pred EEEEccCCcEEEEEEECCC-CCeEE---ccCCCCccCc-eECCCCCEEEEEEecCCCEEEEEEECCCCceEE
Confidence 5555442222344444443 33222 2111111233 4466777 455443 2347888886554433
No 140
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=25.23 E-value=1.3e+02 Score=16.56 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=22.8
Q ss_pred eeEEEEeccCCceeeeEEEeeCCEEEEE-ecCCeEEEEe
Q 045559 286 WTKEFSTTPILAVDAPIGFWKNDTFFIR-SNTEELLLYD 323 (335)
Q Consensus 286 W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd 323 (335)
|..+.++........-+.+.+++..++. ..++.+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5566666433344555666667676554 4567787776
No 141
>PRK11408 hypothetical protein; Provisional
Probab=25.16 E-value=1.4e+02 Score=23.34 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=17.4
Q ss_pred CCeEEEEeCCCCceeecccC
Q 045559 316 TEELLLYDPNSEEIIDFQHK 335 (335)
Q Consensus 316 ~~~l~~yd~~~~~~~~v~~~ 335 (335)
-++++||-|+|-+|+.++++
T Consensus 46 ~G~v~Y~aPDtL~WE~l~~g 65 (145)
T PRK11408 46 VGEVYYFAPDTLKWESLELG 65 (145)
T ss_pred CCeEEEeCCCccceeccCCc
Confidence 35799999999999999875
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.69 E-value=7.3e+02 Score=24.99 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=52.2
Q ss_pred EEEEEECCccceeeecCCCccccCCCCeeEEE-EeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEec-cCCceeeeEE
Q 045559 226 VILSFDMSDEVFEEILGPNCLLEISPKHTVFG-LYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTT-PILAVDAPIG 303 (335)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~-~~~~~~~~~~ 303 (335)
.|.--|+..|...++..-.... -.+. ..++.+.+.+.+ ..++.||.-++ .+..|. |-.. ..-+.
T Consensus 201 ~Ir~w~~~ge~l~~~~ghtn~v------Ysis~~~~~~~Ivs~gE--DrtlriW~~~e-----~~q~I~lPtts-iWsa~ 266 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHTNFV------YSISMALSDGLIVSTGE--DRTLRIWKKDE-----CVQVITLPTTS-IWSAK 266 (745)
T ss_pred eEEEEeccCceeeeeeccceEE------EEEEecCCCCeEEEecC--CceEEEeecCc-----eEEEEecCccc-eEEEE
Confidence 5555666555555443322211 1223 445667777766 57899998774 444452 3323 33345
Q ss_pred EeeCCEEEEEecCCeEEEEeCCCCc
Q 045559 304 FWKNDTFFIRSNTEELLLYDPNSEE 328 (335)
Q Consensus 304 ~~~~~~il~~~~~~~l~~yd~~~~~ 328 (335)
+..||+|+....++.+.+|-.+.++
T Consensus 267 ~L~NgDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EeeCCCEEEeccCceEEEEEecccc
Confidence 5678999888888777777665443
No 143
>PF14977 FAM194: FAM194 protein
Probab=24.62 E-value=4.3e+02 Score=22.25 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=38.5
Q ss_pred EEEEeCCeEEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecCCeEEEEeCCCCce
Q 045559 255 VFGLYNDSLSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEI 329 (335)
Q Consensus 255 ~l~~~~g~L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~ 329 (335)
.+.-=.|+|+++...........|+++| +..+ ....+++ ...-.+..++|.+.+..+...-.++|.+++..
T Consensus 27 ~i~YPSGnlAi~~~~~~~~~~~~~v~eD~~~~~-ilA~Fd~---~G~g~~y~~~g~~~l~l~~~gG~~~D~~G~~~ 98 (208)
T PF14977_consen 27 QIFYPSGNLAICISPTCRGGFTYIVYEDSPENT-ILALFDS---SGHGTCYHPNGNIWLVLNQEGGQYFDQKGNRV 98 (208)
T ss_pred EEEeCCCCEEEEEeccCCCceEEEEEecCCCCc-eEEEEcC---CCCEEEEcCCCCEEEEEECCCCEEEcCCCCEE
Confidence 3445578887777664355688899999 4444 2233322 12333334566655544433345566655433
No 144
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=24.50 E-value=5e+02 Score=25.24 Aligned_cols=156 Identities=11% Similarity=0.024 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCcceecC---cccccccccCCCceeeeecce-EEEEeecCCCCCccCceEEEEEECCccceeeecC---
Q 045559 170 SRQVFIYSFSDNSWRNFQ---GFEFGMYDLDEVLDCTYHNGA-CHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILG--- 242 (335)
Q Consensus 170 ~~~~~vyss~~~~W~~~~---~~p~~~~~~~~~~~~v~~~G~-~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~--- 242 (335)
..++++|+..+++|-.=. .+|-+..- .+.+++|. ||.+...-... .+.=--|.++..+|..-++
T Consensus 56 iDELHvYNTatnqWf~PavrGDiPpgcAA-----~GfvcdGtrilvFGGMvEYG----kYsNdLYELQasRWeWkrlkp~ 126 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFAPAVRGDIPPGCAA-----FGFVCDGTRILVFGGMVEYG----KYSNDLYELQASRWEWKRLKPK 126 (830)
T ss_pred hhhhhhhccccceeecchhcCCCCCchhh-----cceEecCceEEEEccEeeec----cccchHHHhhhhhhhHhhcCCC
Confidence 467899999999996432 22322222 36777774 77765432110 1122224455555544322
Q ss_pred CCccccCC--CCeeEEEEeCCeEEEEEecC------------CCCEEEEEEECC---CCceeEEEEec--cCC--ceeee
Q 045559 243 PNCLLEIS--PKHTVFGLYNDSLSFLVFDE------------RESCFDIWTMKE---RYHWTKEFSTT--PIL--AVDAP 301 (335)
Q Consensus 243 P~~~~~~~--~~~~~l~~~~g~L~~~~~~~------------~~~~~~IW~l~~---~~~W~~~~~i~--~~~--~~~~~ 301 (335)
|+..+... +..-.+...+.+-++++... .-+.+-|-.|.. .-.|..-.+-+ |.+ .....
T Consensus 127 ~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAV 206 (830)
T KOG4152|consen 127 TPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAV 206 (830)
T ss_pred CCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeE
Confidence 22111111 11123444556666766532 112333333443 33576543332 222 22445
Q ss_pred EEEeeCC---EEEEEec-C----CeEEEEeCCCCceeeccc
Q 045559 302 IGFWKND---TFFIRSN-T----EELLLYDPNSEEIIDFQH 334 (335)
Q Consensus 302 ~~~~~~~---~il~~~~-~----~~l~~yd~~~~~~~~v~~ 334 (335)
+...+|. ++++..+ . ..|+..|++|-.|.|...
T Consensus 207 iY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 207 IYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSL 247 (830)
T ss_pred EEEeccCCcceEEEEcccccccccceeEEecceeecccccc
Confidence 5555554 3444433 1 358999999999988764
No 145
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=2.7e+02 Score=28.98 Aligned_cols=70 Identities=13% Similarity=0.337 Sum_probs=41.1
Q ss_pred EEeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCceeeeEEEeeCCEEEE-EecCCeEEEEeCCCC
Q 045559 257 GLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFI-RSNTEELLLYDPNSE 327 (335)
Q Consensus 257 ~~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~-~~~~~~l~~yd~~~~ 327 (335)
+..++.|=++....+...+.+|.|.++..|..-- ........+-+-+++..++++ ..+++.+-+||+...
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt-crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT-CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehh-hhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 3444443333333246789999999988896632 211222233344466666555 556778899998653
No 146
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=23.98 E-value=66 Score=24.43 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=14.9
Q ss_pred CeEEEEeCCCCceeecccC
Q 045559 317 EELLLYDPNSEEIIDFQHK 335 (335)
Q Consensus 317 ~~l~~yd~~~~~~~~v~~~ 335 (335)
-.|+.||..+++|++.+|+
T Consensus 29 v~vY~f~~~~~~W~K~~iE 47 (122)
T PF06058_consen 29 VVVYKFDHETNEWEKTDIE 47 (122)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEeecCCCCcEeecCcE
Confidence 3577788999999998763
No 147
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=23.94 E-value=73 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.4
Q ss_pred CeEEEEeCCCCceeecccC
Q 045559 317 EELLLYDPNSEEIIDFQHK 335 (335)
Q Consensus 317 ~~l~~yd~~~~~~~~v~~~ 335 (335)
++++.||..+.+|+++.++
T Consensus 54 ~~l~~~D~~~~~~~~i~~~ 72 (84)
T PF05237_consen 54 GKLLTIDLLNMSFRSIRIK 72 (84)
T ss_dssp TEEEEEETTTTEEEEEE--
T ss_pred hheeeEECCCCeEEEEecC
Confidence 5899999999999998763
No 148
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=23.36 E-value=83 Score=24.14 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=19.3
Q ss_pred CEEEEEecCCeEEEEeCCCCceeecccC
Q 045559 308 DTFFIRSNTEELLLYDPNSEEIIDFQHK 335 (335)
Q Consensus 308 ~~il~~~~~~~l~~yd~~~~~~~~v~~~ 335 (335)
.+.++...+ +|+.||.+++.|.+-++|
T Consensus 19 E~~lf~~r~-KL~~~~~~~~~WkerG~G 45 (130)
T smart00160 19 EEVIFSARA-KLYRFANDKKEWKERGVG 45 (130)
T ss_pred eEEEEEEEe-EEEEEcCCCCCCeeccEE
Confidence 336666555 688888888888887653
No 149
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.30 E-value=5e+02 Score=22.61 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=40.5
Q ss_pred eEEEEEecCCCCEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEe-cCCeEEEEeCC-CCceeeccc
Q 045559 262 SLSFLVFDERESCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRS-NTEELLLYDPN-SEEIIDFQH 334 (335)
Q Consensus 262 ~L~~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~-~~~~~~v~~ 334 (335)
+-+++...+ ...+-||.-+. .+.|..+.-- +++....-+.-.-.|.+|-.. +++++-.+-.. .++|++|..
T Consensus 223 ~s~iAS~Sq-Dg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 223 KSTIASCSQ-DGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ceeeEEecC-CCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 345555554 56788999988 6789775322 344333333333456766444 35555444333 358888764
No 150
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=22.90 E-value=73 Score=22.39 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=15.5
Q ss_pred CeEEEEeCCCCceeeccc
Q 045559 317 EELLLYDPNSEEIIDFQH 334 (335)
Q Consensus 317 ~~l~~yd~~~~~~~~v~~ 334 (335)
..+.+||.+.+.|+.+.+
T Consensus 49 ~s~~yfDve~~~WRSFk~ 66 (83)
T PF10902_consen 49 TSVRYFDVEKKGWRSFKI 66 (83)
T ss_pred ceEEEEEeccCceeeeeh
Confidence 469999999999998765
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.89 E-value=4.8e+02 Score=23.64 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=32.8
Q ss_pred eEEEEeCCeEEEEEecCCCCEEEEEEECCCCceeEEEEeccCCce-eeeEEEeeCCEEEEEe
Q 045559 254 TVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAV-DAPIGFWKNDTFFIRS 314 (335)
Q Consensus 254 ~~l~~~~g~L~~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~-~~~~~~~~~~~il~~~ 314 (335)
+.++..++.-++..... .+.+.+|-++. ..+.+|+ ...+ -+-.+++++|+++...
T Consensus 191 i~iGiA~~~k~imsas~-dt~i~lw~lkG----q~L~~id-tnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASL-DTKICLWDLKG----QLLQSID-TNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred EEEeecCCceEEEEecC-CCcEEEEecCC----ceeeeec-cccccccceeeCCCCcEEEEe
Confidence 45788888877766664 68899999997 3444553 2211 1223445555555444
No 152
>PF13854 Kelch_5: Kelch motif
Probab=22.77 E-value=1.7e+02 Score=17.02 Aligned_cols=28 Identities=4% Similarity=0.010 Sum_probs=18.0
Q ss_pred eEEEEeCCeEEEEEecC---CCCEEEEEEEC
Q 045559 254 TVFGLYNDSLSFLVFDE---RESCFDIWTMK 281 (335)
Q Consensus 254 ~~l~~~~g~L~~~~~~~---~~~~~~IW~l~ 281 (335)
-..+..+++|++++... ....=++|+++
T Consensus 8 hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 8 HSAVVVGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred eEEEEECCEEEEEcCccCCCCCEECcEEEEE
Confidence 34566788999998874 22234566665
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.39 E-value=5.9e+02 Score=23.11 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=23.1
Q ss_pred eeEEEeeCCEEEE-EecCCeEEEEeCCCCceeec
Q 045559 300 APIGFWKNDTFFI-RSNTEELLLYDPNSEEIIDF 332 (335)
Q Consensus 300 ~~~~~~~~~~il~-~~~~~~l~~yd~~~~~~~~v 332 (335)
.-+|..++++++. ...+..++.||++.+.+..|
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i 224 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI 224 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecCCceeeee
Confidence 3467766677544 45577899999998777655
No 154
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=20.83 E-value=1.1e+03 Score=25.52 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=60.6
Q ss_pred cceEEEEeecCCCCCccCceEEEEEECCccceeeecCCCcc----cc----CC-CCeeEEEEe-CCe-EEEEEecCCCCE
Q 045559 206 NGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCL----LE----IS-PKHTVFGLY-NDS-LSFLVFDERESC 274 (335)
Q Consensus 206 ~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~----~~----~~-~~~~~l~~~-~g~-L~~~~~~~~~~~ 274 (335)
+|.+|..... ...|..+|..+.....+...... .. .. .....++.. +|. |+++... .+.
T Consensus 694 ~g~LyVad~~--------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~ 763 (1057)
T PLN02919 694 NEKVYIAMAG--------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSS 763 (1057)
T ss_pred CCeEEEEECC--------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCe
Confidence 5677765433 44688888877655443211100 00 00 011123333 444 8877765 577
Q ss_pred EEEEEECCCCceeEEE-----------EeccC------CceeeeEE--EeeCCEEEEEec-CCeEEEEeCCCCceeec
Q 045559 275 FDIWTMKERYHWTKEF-----------STTPI------LAVDAPIG--FWKNDTFFIRSN-TEELLLYDPNSEEIIDF 332 (335)
Q Consensus 275 ~~IW~l~~~~~W~~~~-----------~i~~~------~~~~~~~~--~~~~~~il~~~~-~~~l~~yd~~~~~~~~v 332 (335)
+.+|-++. ..-.... ..... ..+..|.+ +..+|++++... ++++.+||+++++...+
T Consensus 764 Irv~D~~t-g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 764 IRALDLKT-GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred EEEEECCC-CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 88887775 2211111 00000 01234554 456788877654 67899999999887643
No 155
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.62 E-value=1.8e+02 Score=16.40 Aligned_cols=20 Identities=5% Similarity=0.428 Sum_probs=13.7
Q ss_pred EEEEe-cCCeEEEEeCCCCce
Q 045559 310 FFIRS-NTEELLLYDPNSEEI 329 (335)
Q Consensus 310 il~~~-~~~~l~~yd~~~~~~ 329 (335)
+++.. ..+.+..+|+++++.
T Consensus 6 lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeE
Confidence 44433 467788899987765
Done!