Query 045562
Match_columns 525
No_of_seqs 199 out of 2364
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 05:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2.9E-29 1E-33 266.6 29.8 416 35-517 8-448 (491)
2 2xut_A Proton/peptide symporte 100.0 1.3E-29 4.6E-34 271.6 21.9 432 37-517 9-467 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.8E-26 6.1E-31 241.7 23.0 376 39-519 27-411 (451)
4 3o7q_A L-fucose-proton symport 99.9 6.1E-25 2.1E-29 229.3 31.3 355 38-519 24-409 (438)
5 2gfp_A EMRD, multidrug resista 99.9 3.1E-24 1.1E-28 219.8 18.1 346 43-517 3-352 (375)
6 4gc0_A D-xylose-proton symport 99.9 3.4E-21 1.2E-25 204.2 23.1 157 75-240 54-218 (491)
7 2cfq_A Lactose permease; trans 99.9 4.7E-22 1.6E-26 207.3 10.3 366 40-519 7-377 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.3E-13 4.6E-18 143.6 11.8 181 39-243 251-434 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.7E-12 9.2E-17 133.3 15.7 170 39-238 257-428 (438)
10 2cfq_A Lactose permease; trans 99.3 2.1E-12 7.3E-17 134.1 10.5 178 40-244 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 2.6E-11 8.9E-16 128.0 10.7 186 42-246 285-475 (491)
12 4gc0_A D-xylose-proton symport 99.1 2.7E-10 9.1E-15 120.1 10.1 184 41-246 277-466 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.3E-10 4.6E-15 118.0 3.5 165 40-230 199-364 (375)
14 2xut_A Proton/peptide symporte 98.1 2.2E-05 7.5E-10 83.1 13.1 115 371-518 56-175 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.9e-29 Score=266.60 Aligned_cols=416 Identities=20% Similarity=0.272 Sum_probs=287.0
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHHhhhhhHHHHhhh-ccchHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGP-----LAQSTATAAENVNAWSGVASLLPLFGAFLADS-FLGRYR 108 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~-~~Grr~ 108 (525)
.++++|..+.+.+..++.++.+|++.++++.|+++. +|.+..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345677889999999999999999999999999988 99999999999999999999999999999999 8 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccc
Q 045562 109 AIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK 188 (525)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (525)
++..+.++..++.+++.++.+ .+.++++|+++|++.+...++..++++|++|+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--- 143 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFG--------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR--- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS--------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH---
T ss_pred HHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc---
Confidence 999999999999888887643 678899999999999999999999999999987632
Q ss_pred ccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCC--CCCCchhhhHHHHHH
Q 045562 189 LKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLK--GEEKSPFLRIGQVFV 266 (525)
Q Consensus 189 ~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 266 (525)
|++++++++...++|..++|.+++++.++.||+++|++.++..+++++.++...++..+.++ +++.....+..+...
T Consensus 144 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 144 -RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred -ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 66788889999999999999999999999999999999887777666655544333222111 110011111111100
Q ss_pred H--------------HHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHh-hc-CCCCCCCcccchhhHHHHHHHHH
Q 045562 267 T--------------AVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL-AS-NGSKGYGKVCSVGEVEEAKALLR 330 (525)
Q Consensus 267 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~ 330 (525)
. .......+.+. .......... .. ......+++... ...++++...
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 284 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWNSLPA-----------------YINLLTIVAIAIPVFYFAWMISSVKV-TSTEHLRVVS 284 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCCTTH-----------------HHHHHHHHHHHHHHHHHHHHC-------------CTT
T ss_pred HHHHHHHHHHHHHHHHHhccCccccc-----------------chhhhhHHHHHHHHHHHHHHhhcccc-cHHHHHHHHH
Confidence 0 00000000000 0000000000 00 000000000000 1223344444
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhc-cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCc
Q 045562 331 LVPIWTTCLVYAIVFAQSSTFFTKQGVT-MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITM 409 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~ 409 (525)
...++.....++..+.+....+..+... .+. .....+.+...+.+..++..++.++ +.||++||+ ...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~~~r~--~~~ 353 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDS-----SWFPVSWFQSLNPLFIMLYTPFFAW----LWTAWKKNQ--PSS 353 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC-----SSSCSGGGTTHHHHHHHHHHHHHHH----HHHHTTTC-----C
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc-----CccCHHHHhccchHHHHHHHHHHHH----HHHHHhccC--CCc
Confidence 4555556666777777776655544322 121 1144566777778888888888776 567776653 345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhH
Q 045562 410 LQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELR 489 (525)
Q Consensus 410 ~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 489 (525)
.+.+.++.++.+++++......... + .....+.+++++.+++.+++++...+..++++.+..|++.|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 354 PTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 6677789999888887777653210 0 00024677788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 490 SVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 490 g~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
|+++|++++...+|+.+++.+.+.+.+.
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998887654
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.3e-29 Score=271.61 Aligned_cols=432 Identities=25% Similarity=0.413 Sum_probs=277.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC------CChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHH
Q 045562 37 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA------QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAI 110 (525)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~ 110 (525)
+++|..+.+....++..+.+|++.++++.|+++++| .+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345677888889999999999999999999999999 99999999999999999999999999999965999999
Q ss_pred HHHHHHHHHHHHHHHHhh-hhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccc
Q 045562 111 IIASLIYVLGLGLLTLSA-VLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKL 189 (525)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 189 (525)
..+.++..++.+++.++. + .+.+++.|++.|++.+...|+..++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHS--------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------ 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSC--------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------
T ss_pred HHHHHHHHHHHHHHHHhccc--------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------
Confidence 999999999988888764 3 6888999999999999999999999999999888
Q ss_pred ccee---hhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHH
Q 045562 190 KSSF---FNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFV 266 (525)
Q Consensus 190 r~~~---~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (525)
|+++ +++++...++|..++|.+++++.+..||+++|++.+++.+++.+.++...++.++.++++ ++..+..+...
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 220 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFLPVIR 220 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--ccchhHHHHHH
Confidence 7554 455899999999999999999998899999999988777666665555444333222222 11111111111
Q ss_pred HHHhccccCCchhhhHhhhhC----CCCCCCccchhhhhH------HHhhcCCCCCCCc-------ccchhhHHHHHHHH
Q 045562 267 TAVRNWRITPSAIALEEEARG----TLPHQSSEQFKFLNK------ALLASNGSKGYGK-------VCSVGEVEEAKALL 329 (525)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 329 (525)
...+++..+.+......+..+ ............... ...+. ..+.+|+ ........++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
T 2xut_A 221 SALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDAAVDGVRSVL 299 (524)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSSSSTTTTTHH
T ss_pred HHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHhHHHHHHHHH
Confidence 111111110000000000000 000000000000000 00000 0001110 00000112233333
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCc
Q 045562 330 RLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITM 409 (525)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~ 409 (525)
....++.....++..+.+....+..+...++... + .+.+.+...+.+..++..++.+++..+..+|.++| .++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 372 (524)
T 2xut_A 300 RILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTA 372 (524)
T ss_dssp HHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CC
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CCh
Confidence 3444444444555555666555555443333210 1 24566777778888888999888766666665544 456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhH
Q 045562 410 LQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELR 489 (525)
Q Consensus 410 ~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 489 (525)
.+.+.+|.++.+++++.....+... + .....+.+++++.+++.+++++...+..++++.+.+|+++|
T Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 373 LRKMGAGIAITGLSWIVVGTIQLMM-----D--------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp HHHHHTHHHHHHHHHHTTTTTTTTT-----T--------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----c--------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 6777888888888877766532100 0 00024677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 490 SVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 490 g~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
|+++|++++...+|+.+++.+.+.+.+.
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999988764
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.8e-26 Score=241.70 Aligned_cols=376 Identities=9% Similarity=-0.018 Sum_probs=247.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
++..+.+....+...+..+.+.+.+|.+.. ++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 444556666666777777667777776554 66 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHH----hhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 119 LGLGLLTL----SAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 119 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
++.+++++ ..+ ++.++++|++.|++.+...+...+++.|.+|+++ |++++
T Consensus 104 ~~~~~~~~~~~~~~~--------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 157 (451)
T 1pw4_A 104 AVMLFMGFVPWATSS--------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIV 157 (451)
T ss_dssp HHHHHHHHCHHHHSS--------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHH
T ss_pred HHHHHHHhhhhcccc--------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHH
Confidence 99999888 533 6788899999999999999999999999999988 99999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccc
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWR 273 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (525)
++.+...++|..++|.+++++.+.+| |+++|++.+++.++..+..+...++.+.....++.+.. .
T Consensus 158 ~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 223 (451)
T 1pw4_A 158 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------K 223 (451)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh--------------c
Confidence 99999999999999999999888888 99999998877666555444433332211111000000 0
Q ss_pred cCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 045562 274 ITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFT 353 (525)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (525)
.... + +. + .+...+.++++.........+.++..... ....+..+.....+++
T Consensus 224 --~~~~---------------~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 276 (451)
T 1pw4_A 224 --NDYP---------------D--DY-N----EKAEQELTAKQIFMQYVLPNKLLWYIAIA---NVFVYLLRYGILDWSP 276 (451)
T ss_dssp --CC-----------------------------------CCTHHHHHHTSSCHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred --cccc---------------c--cc-h----hhhhcccccccchHHHHHcCHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 0000 0 00 0 00000111111000001111222222211 1111222222222222
Q ss_pred hhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhh--ccCCCCCCchHHHHHHHHHHH-HHHHHHHHH
Q 045562 354 KQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTF--TRKPAGITMLQRIGTGMFLSA-ASMTGATLV 430 (525)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~--~~~~~~~~~~~~i~ig~~l~~-i~~~~~~~~ 430 (525)
.+ +....+. .....+.+.....+..++..++.+. +.||+ ++| +.+.++..+.. ++++.+...
T Consensus 277 ~~---~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 277 TY---LKEVKHF-ALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFRGNR-------GATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HH---BTTBSCC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSTTCH-------HHHHHHHHHHHHHHHHHTTSC
T ss_pred HH---HHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHh
Confidence 21 1111111 1111233445555555555555554 66775 433 45555555544 555444431
Q ss_pred HHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHH-HHHHHHH
Q 045562 431 EMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGV-GSFLSSF 509 (525)
Q Consensus 431 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l-g~~lg~~ 509 (525)
. ..+.+.+....++.|++.....+..+.++.+..|++.||+++|++++...+ |..+++.
T Consensus 342 ~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 342 P--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp C--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 125666777778888888888898899999999999999999999999999 9999999
Q ss_pred HHHHhhhhcc
Q 045562 510 LISAIENATG 519 (525)
Q Consensus 510 ~~~~i~~~~~ 519 (525)
+.|.+.+.+|
T Consensus 402 ~~g~l~~~~g 411 (451)
T 1pw4_A 402 IVGYTVDFFG 411 (451)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHHhcC
Confidence 9999988765
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=6.1e-25 Score=229.28 Aligned_cols=355 Identities=10% Similarity=0.041 Sum_probs=238.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+++.++.+....+...+......+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 3445555556666666666655555555 6678999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHH---HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 118 VLGLGLL---TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 118 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
.++.+++ ....+ ++.++++|++.|++.+...+...++++|.+|+++ |++++
T Consensus 102 ~~~~~~~~~~~~~~~--------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 155 (438)
T 3o7q_A 102 ALGAALFWPAAEIMN--------------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRL 155 (438)
T ss_dssp HHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHH
T ss_pred HHHHHHHHhcccccc--------------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHH
Confidence 9999888 44433 7889999999999999999999999999999999 99999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcc-cccc-------------------------hhhhHHHHHHHHHHHHHHHHhcc-ccee
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQ-DNLN-------------------------WILGFGIPCILMVIALVVFLLGT-KIYR 247 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~~~ 247 (525)
++.+...++|..++|.+++++. +..+ |++.|++.++..++..+.++..+ ++.+
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999987 5554 99999776655554444433322 2111
Q ss_pred ecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHH
Q 045562 248 YSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (525)
++++++ +.. +....++. .....+.
T Consensus 236 ~~~~~~--~~~----------------------------------~~~~~~~~--------------------~~~~~~~ 259 (438)
T 3o7q_A 236 SDNHSD--AKQ----------------------------------GSFSASLS--------------------RLARIRH 259 (438)
T ss_dssp TTCCCC--SST----------------------------------TSHHHHHH--------------------HHTTCSH
T ss_pred cccccc--ccc----------------------------------cchhhhHH--------------------HHHhChH
Confidence 100000 000 00000000 0000111
Q ss_pred HHHHHHH-HHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCC
Q 045562 328 LLRLVPI-WTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAG 406 (525)
Q Consensus 328 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~ 406 (525)
++..... .+............+.++..+ ..+. .....+.+.....+..++..++.+. +.||+++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~----l~~r~~~~--- 325 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEE------IPGM-TAGFAANYLTGTMVCFFIGRFTGTW----LISRFAPH--- 325 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------STTC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHSCHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCc-chhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcch---
Confidence 2121111 111111222222222221111 1111 1111233444444555555555554 67775443
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc
Q 045562 407 ITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT 486 (525)
Q Consensus 407 ~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 486 (525)
+.+.++.++.+++.+...+. .+.+ .....++.+++.+...|..+++..+..|+
T Consensus 326 ----~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 326 ----KVLAAYALIAMALCLISAFA----------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHC----------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred ----HHHHHHHHHHHHHHHHHHHc----------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 67777777777776666542 2333 34445778888898999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 487 ELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 487 ~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
+ ++.++++.. ...+|+.++|.+.|.+.+.+|
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 7 999999887 677999999999999999886
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=3.1e-24 Score=219.76 Aligned_cols=346 Identities=12% Similarity=0.076 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLG 122 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~ 122 (525)
+.+....+...+....+.+.+|.+ .+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 345556666777777777777765 568999999999999999999999999999999999 999999999999999998
Q ss_pred HHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHh
Q 045562 123 LLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC 202 (525)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 202 (525)
++.+.++ .+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+....
T Consensus 81 ~~~~~~~--------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 81 VAVTTSS--------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGIL 134 (375)
T ss_dssp HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHH
T ss_pred HHHHhcc--------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 8888755 7889999999999999999999999999999988 9999999999999
Q ss_pred hhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhH
Q 045562 203 MGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALE 282 (525)
Q Consensus 203 ~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (525)
+|..++|.+++++.+.+||+..|++.++..++..+......++.+ ++++ ++
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------------- 185 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR---PVDA-PR------------------------- 185 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS---TTTC-CC-------------------------
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC---CCCc-cc-------------------------
Confidence 999999999999999899999998877665544442322222211 1110 00
Q ss_pred hhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhhhhhhcccc
Q 045562 283 EEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIW-TTCLVYAIVFAQSSTFFTKQGVTMDR 361 (525)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (525)
+ ..+.+++ ...+.+.++...... +............+.++... ...+
T Consensus 186 ----------~---------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~- 233 (375)
T 2gfp_A 186 ----------T---------------RLLTSYK-----TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLS- 233 (375)
T ss_dssp ----------C---------------CTTTCST-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-HHHH-
T ss_pred ----------c---------------cHHHHHH-----HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC-
Confidence 0 0011111 122223333222221 22222222222222222210 1111
Q ss_pred CcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHH-HHHHHH--HHHHHHHHHHhhh
Q 045562 362 SVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL-SAASMT--GATLVEMKRLKTA 438 (525)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l-~~i~~~--~~~~~~~~~~~~~ 438 (525)
....+.+.....+..++..++.++ +.||.++ ++..+..+ ...+.. ......
T Consensus 234 ------~~~~g~~~~~~~~~~~~~~~~~~~----l~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~------- 287 (375)
T 2gfp_A 234 ------SMTVSILFILPIPAAFFGAWFAGR----PNKRFST---------LMWQSVICCLLAGLLMWIPDWFG------- 287 (375)
T ss_dssp ------HHHHHHHHHTHHHHHHHHHHHHHT----TTTHHHH---------HHHHHHHHHHHTSSSSSHHHHHH-------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhc-------
Confidence 111223344444444454544443 5565421 23344433 222222 222211
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
..+.+.+....++.+++.+...+...+++.+..| +.||++.|+.+....+|..+++.+.+.+.+.
T Consensus 288 -------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 288 -------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1255666677888899999999999999999998 8899999999999999999999988887654
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.87 E-value=3.4e-21 Score=204.18 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHH
Q 045562 75 TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFF 154 (525)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
....+++.+++.++..++.+++|+++||+ |||+++.++.+++.++.++++++.............. ..-..+.+.++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~--~~~a~~~~~l~ 130 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVP--VYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCC--GGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHH--HHHhhhHHHHH
Confidence 45668888999999999999999999999 9999999999999999999885421100000000000 00012378999
Q ss_pred HHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc--------ccchhhhHH
Q 045562 155 FSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD--------NLNWILGFG 226 (525)
Q Consensus 155 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~--------~~g~~~~f~ 226 (525)
++|+++|+|.|+..+..+++++|..|+++ |++..++.+.+..+|..+++.++..+.. ..+|+..+.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 99999999999999999999999999998 9999999999999999999888765543 235777666
Q ss_pred HHHHHHHHHHHHHH
Q 045562 227 IPCILMVIALVVFL 240 (525)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (525)
+..+..++.++..+
T Consensus 205 ~~~~~~~~~~~~~~ 218 (491)
T 4gc0_A 205 SECIPALLFLMLLY 218 (491)
T ss_dssp TTHHHHHHHHHHGG
T ss_pred hhhhhhhhhhhhhh
Confidence 65555444444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.86 E-value=4.7e-22 Score=207.32 Aligned_cols=366 Identities=11% Similarity=-0.003 Sum_probs=212.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|+.+.+....+.....+..+.+++|.|+++++|.|..+.+++.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4556666666666667777789999999999999999999999999999999999999999999 999999988876654
Q ss_pred HHHHH---HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 120 GLGLL---TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 120 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
+...+ ...... ...++..+++.+++.+...+...+...+..++..+ .++..++.
T Consensus 86 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL-------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHHHH-------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence 32211 111100 00123344455555554444444444444443211 16777888
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCC
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITP 276 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (525)
.+...++|..++|.+++++.+ .+|+..|++.++..++.++..+..+++.++ +++++ +. .
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~---------------~--- 201 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS-SATVA-NA---------------V--- 201 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC-SSCSS-SS---------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc-ccccc-cc---------------c---
Confidence 888889999999999999887 689999887665533333322222221100 00000 00 0
Q ss_pred chhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhh
Q 045562 277 SAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQS-STFFTKQ 355 (525)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 355 (525)
. ++.+ +.++++.. +..+ .+.++............+..+.+. +.++..+
T Consensus 202 -------------~-~~~~---------------~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (417)
T 2cfq_A 202 -------------G-ANHS---------------AFSLKLAL-ELFR-QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250 (417)
T ss_dssp -------------S-SCCC---------------CCCHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------c-cccc---------------cccHHHHH-HHhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00000000 0011 122222222211111222222222 2222211
Q ss_pred hhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRL 435 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~ 435 (525)
.+.. +. .....+.+...+.+..++..++.++ +.||+++| +.+.++.++.+++++....
T Consensus 251 ---~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~l~~~~~~~~~~~~~~~~------ 308 (417)
T 2cfq_A 251 ---FATG-EQ-GTRVFGYVTTMGELLNASIMFFAPL----IINRIGGK-------NALLLAGTIMSVRIIGSSF------ 308 (417)
T ss_dssp ---SSSH-HH-HTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCHH-------HHHHHHHHHHHHHHHHHTT------
T ss_pred ---Hhcc-CC-ChhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcHH-------HHHHHHHHHHHHHHHHHHH------
Confidence 1100 00 0000122333333444444444444 67776554 6667777777776555543
Q ss_pred hhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 045562 436 KTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSL-YLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 436 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~~~~~i 514 (525)
..+.+.++...++.+++.....+..+.++.+..|++.||++.++ +++...+|+.++|.+.|++
T Consensus 309 ----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 309 ----------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp ----------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred ----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 12455555666667777777777778999999999999999999 5888999999999999988
Q ss_pred hhhcc
Q 045562 515 ENATG 519 (525)
Q Consensus 515 ~~~~~ 519 (525)
.+..|
T Consensus 373 ~~~~g 377 (417)
T 2cfq_A 373 YESIG 377 (417)
T ss_dssp HHHSH
T ss_pred HHhcC
Confidence 77543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=1.3e-13 Score=143.57 Aligned_cols=181 Identities=11% Similarity=0.071 Sum_probs=149.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc-cchHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF-LGRYRAIIIASLIY 117 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~-~Grr~~~~~~~~~~ 117 (525)
.|..+.+.+..++..+..+++..++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ .|||+.+..+..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 35677788888888889999999999999988999999999999999999999999999999994 27888877776655
Q ss_pred H-HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 118 V-LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 118 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
. ++.+++.+... .+.+.+++..++.|++.+...+...+++.|.+|+++ |++++++
T Consensus 331 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 386 (451)
T 1pw4_A 331 VTIATIVYWMNPA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 386 (451)
T ss_dssp HHHHHHHTTSCCT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHH
T ss_pred HHHHHHHHHHhcc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHH
Confidence 5 55544443311 125666777788899888888888899999999988 9999999
Q ss_pred hHHHHhh-hhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 197 WYFGMCM-GTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 197 ~~~~~~~-g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.+...++ |..++|.+.+++.+..||+..|++.+++.+++.+..+...
T Consensus 387 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999988877777666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=2.7e-12 Score=133.25 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=138.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITY-LTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
.|..+......++.....+.+..++|.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+++..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3456667777777788888888999999 8888899999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++.+++.+... ... ++..++.|++.+...|...++..|.+|++ ++.+.++.
T Consensus 336 ~~~~~~~~~~~~--------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 387 (438)
T 3o7q_A 336 MALCLISAFAGG--------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHCCH--------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHH
T ss_pred HHHHHHHHHcCC--------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHH
Confidence 888777666543 232 33447788888988999999999999844 45566665
Q ss_pred HHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVV 238 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 238 (525)
. ...+|..++|.+.|++.+..| ++..|.+.+++.++.++.
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 5 567999999999999999999 999999876555444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=2.1e-12 Score=134.09 Aligned_cols=178 Identities=8% Similarity=0.073 Sum_probs=129.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQS---TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~ 116 (525)
|..+......+.....++....++|.|+.+.++.. ....+...+...+...++.++.|+++||+ |||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 34444444444444455555667888887666532 34456666667777888899999999999 999999888877
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
.+++..++.+..+ .+.+++..++.+++.+...+...+++.|.+|++. |+++++.
T Consensus 299 ~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 352 (417)
T 2cfq_A 299 MSVRIIGSSFATS--------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLV 352 (417)
T ss_dssp HHHHHHHHTTCCS--------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHH
T ss_pred HHHHHHHHHHhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHH
Confidence 7776555544322 4555566666777766666677889999999988 9999998
Q ss_pred -hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 197 -WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 197 -~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
++....+|..++|.++|++.++.|+...|.+.+++.+++.+..+...+
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 577888999999999999998889999998888776666665554444
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=2.6e-11 Score=128.03 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHH-----HHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAII-----IASLI 116 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~-----~~~~~ 116 (525)
.+.+....+.....++....+++.|+.+.++.+..+.+.......+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44444455555566666677888999988888877777777888888889999999999998 9876554 66666
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
..++..++......... +.+.+.+.+++..++.|++.+...+...+++.|.+|++. |+++.++
T Consensus 364 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGT-----------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHTTTHHHHHHCCC-----------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHhcCC-----------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 66666665554311000 001124666777788999999989999999999999999 9999999
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccce
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIY 246 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 246 (525)
.+...++|..++|.+.+++.+ .++...|.+.+++.+++.+..+...++.
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 4677778777766666666555555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.07 E-value=2.7e-10 Score=120.14 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.........++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 344344444444444333344444556667788888777777778888899999999999999 9999999998888777
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+.+......... ..........+..+++. +..|..+.+.+|.+|++. |++++++.+..
T Consensus 356 ~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 356 MFSLGTAFYTQAP--------------GIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHTTCC--------------HHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHhcccc--------------hHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 7666554321110 11222222222233333 344677889999999999 99999999999
Q ss_pred HhhhhHHHhhhhhhccc------ccchhhhHHHHHHHHHHHHHHHHhcccce
Q 045562 201 MCMGTFVTLTVLNYIQD------NLNWILGFGIPCILMVIALVVFLLGTKIY 246 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 246 (525)
..+++.+++.+...+.+ ..++..+|++.+++.+++.+..++..||+
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99999988887766543 34566677777777677666666655543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.99 E-value=1.3e-10 Score=118.04 Aligned_cols=165 Identities=11% Similarity=-0.036 Sum_probs=128.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH-HH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI-YV 118 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~-~~ 118 (525)
|..+......++.....+.+..++|.|+++.+|.+..+.+.+.....++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566677777788888888899999999988999999999999999999999999999999998 873 2233322 22
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
.+..+....... ..+.+.+++..++.|++.+...+...+++.|.+| ++ |+++.+..+
T Consensus 276 ~~~~~~~~~~~~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~ 332 (375)
T 2gfp_A 276 AGLLMWIPDWFG----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVG 332 (375)
T ss_dssp TSSSSSHHHHHH----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHH
T ss_pred HHHHHHHHhhhc----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHH
Confidence 222211111100 0124556677788899999999999999999998 66 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHH
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCI 230 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~ 230 (525)
...++|..++|.+.+.+.++.+|...+.+.++
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999888888887776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.08 E-value=2.2e-05 Score=83.08 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=91.4
Q ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhh-ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCC
Q 045562 371 AASLQSFISLAIVLTIPIYDRIFVPIARTF-TRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNV 449 (525)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~-~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 449 (525)
.+++.....+...+..++.+. +.||+ ++| +.+.++.++.+++.+...+.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~----l~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~------------------- 105 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGW----IADRFFGKY-------NTILWLSLIYCVGHAFLAIF------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH----HHTTSSCSH-------HHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhcch-------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344555556666666666665 67776 554 77888888888888777752
Q ss_pred Cccc-hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhc
Q 045562 450 TIPM-SVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSL---YLSIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 450 ~~~~-~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi---~~~~~~lg~~lg~~~~~~i~~~~ 518 (525)
. +.+.+.+..++.|++.+...+...+++.+..|++.|++..++ ++....+|..+++.+.+.+.+..
T Consensus 106 ---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 106 ---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred ---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 677788888999999999999999999999999999877777 88999999999999988877643
Done!