BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045563
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A0N|A Chain A, Crystal Structure Of D-Glucuronic Acid-Bound Alginate
Lyase Val-1 From Chlorella Virus
pdb|3GNE|A Chain A, Crystal Structure Of Alginate Lyase Val-1 From Chlorella
Virus
pdb|3GNE|B Chain B, Crystal Structure Of Alginate Lyase Val-1 From Chlorella
Virus
pdb|3IM0|A Chain A, Crystal Structure Of Chlorella Virus Val-1 Soaked In 200mm
D- Glucuronic Acid, 10% Peg-3350, And 200mm Glycine-Naoh
(Ph 10.0)
Length = 252
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 32 NAITFVVEAKELLSFDLGRGVEKRIADLSNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFV 91
NAITF E FD RG + + + S H + R + W
Sbjct: 71 NAITFAWEVFYPKGFDFARGGKHGGTFIGHGAASGYQHSKTGASNRIM---------WQE 121
Query: 92 CGSILASLQGREDLMQKIKGLIVDSGGAGAF 122
G ++ + DL QKI GL + G G F
Sbjct: 122 KGGVIDYIYPPSDLKQKIPGLDPEGHGIGFF 152
>pdb|2YHK|A Chain A, D214a Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii
pdb|2YHK|B Chain B, D214a Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii
Length = 456
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGIN---AITFVVEAKELLSFDLGRGVE-KRIAD 58
AVTV L G ++R E + GI A T VE + + +G E K IA+
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYAATRCVENAYFIK-EQEQGFENKSIAE 239
Query: 59 LSNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+ +E+ S+ GK+ CL+ N G F+C
Sbjct: 240 IVHEMFSYADGCTMSGKKDCLV-----NIGGFLC 268
>pdb|2YCN|A Chain A, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCN|B Chain B, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSF--DLGRGVE-KRIADL 59
AVTV L G ++R E + GI E F + +G E K IA++
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+E+ S+ GK+ CL+ N G F+C
Sbjct: 241 VHEMFSYADGCTMSGKKDCLV-----NIGGFLC 268
>pdb|2EZ2|A Chain A, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ2|B Chain B, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLF|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLF|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLH|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
pdb|2YCT|A Chain A, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
pdb|2YCT|B Chain B, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
Length = 456
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSF--DLGRGVE-KRIADL 59
AVTV L G ++R E + GI E F + +G E K IA++
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+E+ S+ GK+ CL+ N G F+C
Sbjct: 241 VHEMFSYADGCTMSGKKDCLV-----NIGGFLC 268
>pdb|2YCP|A Chain A, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|B Chain B, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|C Chain C, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|D Chain D, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSF--DLGRGVE-KRIADL 59
AVTV L G ++R E + GI E F + +G E K IA++
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+E+ S+ GK+ CL+ N G F+C
Sbjct: 241 VHEMFSYADGCTMSGKKDCLV-----NIGGFLC 268
>pdb|1TPL|A Chain A, The Three-Dimensional Structure Of Tyrosine Phenol-Lyase
pdb|1TPL|B Chain B, The Three-Dimensional Structure Of Tyrosine Phenol-Lyase
Length = 456
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSF--DLGRGVE-KRIADL 59
AVTV L G ++R E + GI E F + +G E K IA++
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTAAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+E+ S+ GK+ CL+ N G F+C
Sbjct: 241 VHEMFSYADGCTMSGKKDCLV-----NIGGFLC 268
>pdb|2EZ1|A Chain A, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ1|B Chain B, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLH|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
Length = 456
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSF--DLGRGVE-KRIADL 59
AVTV L G ++R E + GI E F + +G E K IA++
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+E+ S+ GK CL+ N G F+C
Sbjct: 241 VHEMFSYADGCTMSGKXDCLV-----NIGGFLC 268
>pdb|2QHR|L Chain L, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 218
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 16 RKHLRRYVEWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSN 61
R+H +EWY + + +V+E K+ S G G+ R + S+
Sbjct: 26 RQHSTYTIEWYQQQPLKPPRYVMELKKDGSHSTGDGIPDRFSGSSS 71
>pdb|2TPL|A Chain A, Tyrosine Phenol-lyase From Citrobacter Intermedius Complex
With 3-(4'- Hydroxyphenyl)propionic Acid,
Pyridoxal-5'-phosphate And Cs+ Ion
pdb|2TPL|B Chain B, Tyrosine Phenol-lyase From Citrobacter Intermedius Complex
With 3-(4'- Hydroxyphenyl)propionic Acid,
Pyridoxal-5'-phosphate And Cs+ Ion
Length = 456
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSF--DLGRGVE-KRIADL 59
AVTV L G ++R E + GI E F + +G E K IA++
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTAAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+E+ S+ GK CL+ N G F+C
Sbjct: 241 VHEMFSYADGCTMSGKXDCLV-----NIGGFLC 268
>pdb|1SCF|A Chain A, Human Recombinant Stem Cell Factor
pdb|1SCF|B Chain B, Human Recombinant Stem Cell Factor
pdb|1SCF|C Chain C, Human Recombinant Stem Cell Factor
pdb|1SCF|D Chain D, Human Recombinant Stem Cell Factor
Length = 273
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 130 GFGAAILKKRSSSAYSTVEDGKINGLEGQVSVSMMQDKEPDIIE 173
FGA KKR S VE+ +IN E +SM+Q+KE + E
Sbjct: 231 AFGALYWKKRQPSLTRAVENIQIN--EEDNEISMLQEKEREFQE 272
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 10 GWLGARRKHLRRYVEWYNSRGINAITFVVE-AKELLSFDLGRGVEK-----RIADL 59
G + AR LR+Y++ ++ +N I+F++E A+E S DL + +EK R ADL
Sbjct: 150 GHITARLSALRKYMQHHDDLPVN-ISFIMEGAEESASTDLDKYLEKHADKLRGADL 204
>pdb|4EJS|A Chain A, Structure Of Yeast Elongator Subcomplex Elp456
Length = 376
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 170 DIIETMLLSLLEKLFSYIINLPDVNQRIKKVVSAVTNNPP 209
DII LL LL +F +INL NQ + + + V + P
Sbjct: 272 DIITPPLLVLLRNMFDSVINLEPFNQEMTEFLERVYKSQP 311
>pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
pdb|3ICC|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
Length = 255
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 17/151 (11%)
Query: 48 LGRGVEKRIADLSNEIVSWVSHEEQDGKQRCLIFHTFSNTG-WFVCGSILASLQGREDLM 106
+GR + KR+A+ + + +++ ++ ++ SN G F G+ L SL G E L
Sbjct: 19 IGRAIAKRLANDGALVAIHYGNRKEEAEE--TVYEIQSNGGSAFSIGANLESLHGVEALY 76
Query: 107 QKIKGLIVDSGGAGAFDPKVWAGGFGAAILKKRSSSAYSTVEDGKINGLEGQVSVSMMQD 166
+ + + G+ FD + G G + ++ + + VSV+
Sbjct: 77 SSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQF----------FDRXVSVNA--- 123
Query: 167 KEPDIIETMLLSLLEKLFSYIINLPDVNQRI 197
K P I LS L S IIN+ RI
Sbjct: 124 KAPFFIIQQALSRLRD-NSRIINISSAATRI 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,030,962
Number of Sequences: 62578
Number of extensions: 319298
Number of successful extensions: 803
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 17
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)