BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045563
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DHN0|TMM53_DANRE Transmembrane protein 53 OS=Danio rerio GN=tmem53 PE=2 SV=1
Length = 281
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 6 VVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKE-LLSFDLGRGVEKRIADLSNEIV 64
V+LLGW G+R KHL +Y YN +G + + K +S LG K + +++++
Sbjct: 30 VILLGWAGSRDKHLAKYSSIYNEQGCTTLRYTAPLKTVFISESLGY---KELRSTAHKLL 86
Query: 65 SWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQ-KIKGLIVDSGGAGAFD 123
+ E + + FH FSN G+ + ++ L + + G +VDS
Sbjct: 87 ELLYDYEVENNP--IFFHVFSNGGFMLYRYMVELLHSHKQFSTLCVVGTVVDS------- 137
Query: 124 PKVWAGGFGAAILKKRSSSAYSTVEDGKINGLEGQVSVSMMQDKEPDIIETMLLSLLEKL 183
A G + R A T K+N L +++ + LL
Sbjct: 138 ----APGSQNVVGALR---ALKTTLGPKVNVLLQYFLLALFA------VAVFLLR----- 179
Query: 184 FSYIINLPDVNQRIKKVVSAVTNNPPACPHLYLYSTGDKVIPYQSVELLIEEQRKTGRKV 243
I+ P + A+ +P P +YLYS D+VI Y+ VE +++ ++ G V
Sbjct: 180 ---IVLYPLTKYFHRNHYDAMMEHPAPWPQMYLYSRADRVIRYRDVEKMVKGLQEKGLMV 236
>sp|Q9D0Z3|TMM53_MOUSE Transmembrane protein 53 OS=Mus musculus GN=Tmem53 PE=2 SV=1
Length = 276
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 36/234 (15%)
Query: 5 TVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVE-AKELLSFDLGRGVEKRIADLSNEI 63
V+LLGW G R K+L +Y Y+ RG I + S LG + IA E+
Sbjct: 35 VVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVIAQKLLEL 94
Query: 64 VSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQ-KIKGLIVDSGGAGAF 122
+ + + ++ L+FH FSN G + +L LQ + + G I DSG
Sbjct: 95 LF-----DYEIEREPLLFHVFSNAGVMLYRYVLELLQTHQRFRHLHVVGTIFDSGPGD-- 147
Query: 123 DPKVWAGGFGAAILKKRSSSAYSTVEDGKINGLEGQVSVSMMQDKEPDIIETMLLSLLEK 182
+ GA A +T+ LE + +V + + +L L
Sbjct: 148 -----SNLIGAL-------RALATI-------LERRPAVLRLLLLAAFALVVILFHFLLA 188
Query: 183 LFSYIINLPDVNQRIKKVVSAVTNNPPACPHLYLYSTGDKVIPYQSVELLIEEQ 236
F+ + + + ++ P LYLYS DKV+ + VE ++E +
Sbjct: 189 PFTALFH--------THFYDRLQDSGSCWPELYLYSRADKVVSARDVERMVEAR 234
>sp|Q6P2H8|TMM53_HUMAN Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1
Length = 277
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 5 TVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSNEIV 64
V+LLGW G + K+L +Y Y+ RG I + ++ F G+ + L+ +++
Sbjct: 37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTA-PWHMVFFSESLGIPS-LRVLAQKLL 94
Query: 65 SWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQKIKGLIVDSG 117
+ E + + L+FH FSN G + +L LQ R ++ G I DS
Sbjct: 95 ELLFDYEIEKEP--LLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSA 145
>sp|Q2TBP5|TMM53_BOVIN Transmembrane protein 53 OS=Bos taurus GN=TMEM53 PE=2 SV=1
Length = 294
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 6 VVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSNEIVS 65
V+LLGW G K+L +Y Y+ RG I + ++ F G+ + L+ +++
Sbjct: 38 VILLGWGGCSDKNLAKYSAIYHKRGCIVIRYTA-PWHMVFFSETLGIPS-LRVLAQKLLE 95
Query: 66 WVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQ-KIKGLIVDSG 117
+ E + + L+FH FSN G + +L LQ + ++ G I DSG
Sbjct: 96 LLFDYEVEKEP--LLFHVFSNAGVMLYRYVLELLQTHQRFCHLRVVGTIFDSG 146
>sp|Q6DJC8|TM53B_XENLA Transmembrane protein 53-B OS=Xenopus laevis GN=tmem53-b PE=2 SV=1
Length = 285
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 43/245 (17%)
Query: 1 ETAVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFV-----VEAKELLSFDLGRGVEKR 55
E V+LLGW G + ++L +Y Y+++G I + V E L F R K+
Sbjct: 25 EREPVVILLGWGGCKDQYLAKYSAIYHNQGCTVIKYTAAWNAVFISESLGFSSLREDAKK 84
Query: 56 IADLSNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQ-KIKGLIV 114
+ +L + + ++ ++FH FSN G+ + I+ L L + + G I
Sbjct: 85 LLELLF---------DYEIEKSPILFHVFSNGGFMLYRYIVELLHSHCRLNKLHVVGTIF 135
Query: 115 DSGGAGAFDPKVWAGGFGAAILKKRSSSAYSTVEDGKINGLEGQVSVSMMQDKEPDIIET 174
DS + G A R+S+ + I L M+ II
Sbjct: 136 DSAPGN----RNVIGSVRALDTILRTST------NNAIRFLALAAFAIMV------IILR 179
Query: 175 MLLSLLEKLFSYIINLPDVNQRIKKVVSAVTNNPPACPHLYLYSTGDKVIPYQSVELLIE 234
++L + K + A+ + P LYLYS D +I Y VE +I
Sbjct: 180 IVLYPVTKFLH------------ENHYDAMKKDSSRWPQLYLYSRADPIISYIDVESMIA 227
Query: 235 EQRKT 239
+R+
Sbjct: 228 ARRRC 232
>sp|Q5WJ39|ADEC1_BACSK Adenine deaminase 1 OS=Bacillus clausii (strain KSM-K16) GN=ade1
PE=3 SV=1
Length = 576
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 24 EWYNSRGINAITFVVEAKELLSFDLGRGVEKRIADLSNEIVSWVSHEEQDGKQRCLIFHT 83
E N G+ A+T++VEA + L D+ V + S E + S +D R L
Sbjct: 109 ELANVAGVEAVTYMVEAAKDLPLDIKMAVPSSVPAASFE-ENGASLSAED--VRLL---- 161
Query: 84 FSNTGWFVCGSIL---ASLQGREDLMQKI-----KGLIVDSGGAG 120
F+N G + G ++ A L G +D+++KI KG +D AG
Sbjct: 162 FANEGVYGLGEVMDYPAVLNGDDDMLEKIAMAKAKGRPIDGHAAG 206
>sp|Q5PPS7|TM53A_XENLA Transmembrane protein 53-A OS=Xenopus laevis GN=tmem53-a PE=2 SV=1
Length = 285
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 1 ETAVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKE-LLSFDLGRGVEKRIADL 59
E V+LLGW G + +L +Y Y+++G I + K ++ LG + A
Sbjct: 25 EREPVVILLGWGGCKDHYLAKYSAIYHNQGCTVIKYTAAWKAVFITESLGLNSLREDAKK 84
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQ-KIKGLIVDSG 117
E++ + + ++ ++FH FSN G+ + I+ L L + + G I DS
Sbjct: 85 LLELLF-----DYEIEKSPIVFHVFSNGGFMLYRYIVELLHSHCPLNKLHVVGTIFDSA 138
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 203 AVTNNPPACPHLYLYSTGDKVIPYQSVELLIEEQRK 238
A+ +P P LYLYS D +I Y VE +I +R+
Sbjct: 196 AMKKDPSRWPQLYLYSRADPIISYLDVESMIAARRR 231
>sp|Q3Z8C1|QUEA_DEHE1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Dehalococcoides ethenogenes (strain 195) GN=queA PE=3
SV=1
Length = 343
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 72 QDGKQRCLIFHTFSNTGWFVCGSIL---------ASLQG-REDLMQKIKGLIVDSGGAGA 121
Q G+ + IF TG+F G +L A ++G ++D KI+ L++ S G G
Sbjct: 34 QSGELKSCIFRDI--TGYFQPGDVLVMNNSRVLPARIKGIKQDTSAKIEILLLKSDGNGC 91
Query: 122 FDPKVWAGGFGAAILKKRSSSAYSTVEDGKINGLEGQVSVS--MMQDKEPDII------E 173
++ A+LK + T+ D I +GQ+ + ++ DKE I E
Sbjct: 92 WE----------ALLKPGKRTKPGTIID--IRKQDGQIHIQAEVLADKEDGIKLLRFSDE 139
Query: 174 TMLLSLLEKLFSYIINLPDVNQRIKKVVSAVTNNPPACPHLYLYST 219
T+L+ L E I+ P + + V A+TN A P L+ T
Sbjct: 140 TLLMKLGEVPLPPYIHTPVSDPERYQTVYALTNGSVAAPTAGLHFT 185
>sp|O35305|TNR11_MOUSE Tumor necrosis factor receptor superfamily member 11A OS=Mus
musculus GN=Tnfrsf11a PE=1 SV=1
Length = 625
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 61 NEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVCGSILASLQGREDLMQKIKGLIVDSGGAG 120
N+ S +S ++ RC H+ +++ VC IL L RE+ M V GAG
Sbjct: 252 NDACSSLSGNKESSGDRCAGSHSATSSQQEVCEGIL--LMTREEKM-------VPEDGAG 302
Query: 121 AFDPKVWAGGFGAAILKKRSSSAYSTVE 148
P AGG A + R+ + S VE
Sbjct: 303 VCGPVCAAGGPWAEVRDSRTFTLVSEVE 330
>sp|P31013|TPL_CITFR Tyrosine phenol-lyase OS=Citrobacter freundii GN=tpl PE=1 SV=1
Length = 456
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 3 AVTVVLLGWLGARRKHLRRYVEWYNSRGINAITFVVEAKELLSF--DLGRGVE-KRIADL 59
AVTV L G ++R E + GI E F + +G E K IA++
Sbjct: 181 AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 60 SNEIVSWVSHEEQDGKQRCLIFHTFSNTGWFVC 92
+E+ S+ GK+ CL+ N G F+C
Sbjct: 241 VHEMFSYADGCTMSGKKDCLV-----NIGGFLC 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,466,037
Number of Sequences: 539616
Number of extensions: 4103193
Number of successful extensions: 11256
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11242
Number of HSP's gapped (non-prelim): 19
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)