Query 045564
Match_columns 296
No_of_seqs 245 out of 1758
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.9 2.2E-20 7.6E-25 178.6 20.2 180 49-251 8-196 (491)
2 2xut_A Proton/peptide symporte 99.8 7.2E-18 2.4E-22 162.6 19.2 179 51-253 9-200 (524)
3 3o7q_A L-fucose-proton symport 99.8 3.7E-17 1.3E-21 153.3 21.8 176 50-247 22-225 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.7 2.6E-17 8.9E-22 154.7 15.4 169 53-247 27-202 (451)
5 2gfp_A EMRD, multidrug resista 99.7 5.6E-16 1.9E-20 142.9 13.7 147 75-246 23-169 (375)
6 4gc0_A D-xylose-proton symport 99.6 3.6E-14 1.2E-18 135.2 18.0 163 87-256 55-227 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.5 4.1E-13 1.4E-17 125.9 19.7 174 54-250 252-432 (451)
8 3o7q_A L-fucose-proton symport 99.5 1E-12 3.5E-17 122.9 20.3 154 66-247 273-428 (438)
9 2cfq_A Lactose permease; trans 99.4 7.2E-12 2.4E-16 117.9 16.1 160 66-250 235-398 (417)
10 2cfq_A Lactose permease; trans 99.3 5.6E-13 1.9E-17 125.5 0.8 157 66-243 22-179 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 5E-11 1.7E-15 113.5 13.3 172 66-254 298-474 (491)
12 4gc0_A D-xylose-proton symport 99.2 5E-10 1.7E-14 106.4 17.4 158 71-248 296-459 (491)
13 2gfp_A EMRD, multidrug resista 98.8 4.5E-10 1.6E-14 103.1 1.0 150 66-239 214-364 (375)
14 2xut_A Proton/peptide symporte 98.2 2.1E-06 7.3E-11 82.0 6.8 91 164-255 405-506 (524)
15 2k21_A Potassium voltage-gated 27.0 55 0.0019 25.2 3.4 29 259-287 71-99 (138)
16 2iub_A CORA, divalent cation t 24.6 69 0.0024 28.8 4.4 27 229-255 334-362 (363)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=2.2e-20 Score=178.55 Aligned_cols=180 Identities=21% Similarity=0.283 Sum_probs=153.7
Q ss_pred ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH
Q 045564 49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQE-----FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQV 120 (296)
Q Consensus 49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~-----lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~ 120 (296)
.++++|.++.+++..+ . .+|++..+++.|+++. +|++..+.+++.+++.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~ 87 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA 87 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 4567777777777666 6 8899999999999998 999999999999999999999999999999994499999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCc-cch
Q 045564 121 IWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIP-QHQ 199 (296)
Q Consensus 121 i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~-~~r 199 (296)
+.++.++..++.++++++. +...++++|++.|++.|...+...++++|.+|++ +.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r 144 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRR 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccc
Confidence 9999999999888776542 2457888999999999999999999999999843 237
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhC
Q 045564 200 GIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSG 251 (296)
Q Consensus 200 ~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~ 251 (296)
+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++..
T Consensus 145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889989999999999999999999998999999999888776666655433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.78 E-value=7.2e-18 Score=162.58 Aligned_cols=179 Identities=18% Similarity=0.262 Sum_probs=148.7
Q ss_pred CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-chHHH
Q 045564 51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFH------ITSINSALISNIVNGFVNLFPVLGAIIADSFL-GSFQV 120 (296)
Q Consensus 51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg------~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i-GR~~~ 120 (296)
.++|.++.+++..+ + .+|++..+++.|+++++| ++..+++++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 34555555555555 6 888899999999999999 999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccch-
Q 045564 121 IWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQ- 199 (296)
Q Consensus 121 i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r- 199 (296)
+.++.++..++.++++++. .+...++++|++.|++.+...+...++++|.+|++ +|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~r~ 144 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS-NKS 144 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT-TTT
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc-chH
Confidence 9999999998887766542 03467888999999999999999999999999944 44
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCC
Q 045564 200 --GIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKH 253 (296)
Q Consensus 200 --~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~ 253 (296)
...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.++++...+
T Consensus 145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456777899999999999999999998889999999988877776665554443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.77 E-value=3.7e-17 Score=153.30 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=141.5
Q ss_pred cCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564 50 RGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI 127 (296)
Q Consensus 50 ~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l 127 (296)
+.+++.+..+....+ . ..+.....+..++.+++|.+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL 100 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHH
Confidence 344555555544444 3 333455555667889999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564 128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF 207 (296)
Q Consensus 128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y 207 (296)
..++.++....... .+.+.++++|++.|++.+...+...++++|.+|++ +|+..+++++
T Consensus 101 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~ 159 (438)
T 3o7q_A 101 YALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES-SGHFRLNLAQ 159 (438)
T ss_dssp HHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST-THHHHHHHHH
T ss_pred HHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch-hHHHHHHHHH
Confidence 99988887432211 14578899999999999999999999999999954 7899999999
Q ss_pred HHHHHHHHHHHHHHHhhh-cccc-------------------------chhhHHHHHHHHHHHHHH
Q 045564 208 ILTYASTVISSAAFVYIE-DNLS-------------------------WRLGSGLNIAANLAGVVI 247 (296)
Q Consensus 208 ~~~~iG~~i~p~v~~~l~-~~~g-------------------------w~~~F~i~~~~~~~~~~~ 247 (296)
.+.++|..++|.+++++. +..+ ||+.|++.++..++..++
T Consensus 160 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 5544 999998777655444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.74 E-value=2.6e-17 Score=154.69 Aligned_cols=169 Identities=9% Similarity=0.001 Sum_probs=137.4
Q ss_pred chhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564 53 RTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL 130 (296)
Q Consensus 53 ~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i 130 (296)
++.+..++...+ . ...........++.+++ .+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHH
Confidence 444444444444 3 22223334444555677 999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHh----hccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH
Q 045564 131 GTILLDS----TATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF 206 (296)
Q Consensus 131 g~~~la~----~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~ 206 (296)
+.+++++ +. +...++++|++.|++.+...+...++++|.+|+ ++|+..++++
T Consensus 105 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~ 160 (451)
T 1pw4_A 105 VMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVW 160 (451)
T ss_dssp HHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-THHHHHHHHH
T ss_pred HHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-hhhhHHHHHH
Confidence 9888876 32 235788899999999999999999999999984 4799999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHH
Q 045564 207 FILTYASTVISSAAFVYIEDNLS-WRLGSGLNIAANLAGVVI 247 (296)
Q Consensus 207 y~~~~iG~~i~p~v~~~l~~~~g-w~~~F~i~~~~~~~~~~~ 247 (296)
+.+.++|..++|.+++++.+..| ||+.|++.++..++..++
T Consensus 161 ~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 161 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 202 (451)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888 999999988766554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.66 E-value=5.6e-16 Score=142.86 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=130.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCc
Q 045564 75 MVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS 154 (296)
Q Consensus 75 ~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~ 154 (296)
.+.+.+++|.+..+.+++.+++.++..++.++.|+++|| +||||++.++.++..++.+++.+..
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------------- 86 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTS--------------- 86 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc---------------
Confidence 344567899999999999999999999999999999999 7999999999999999888776543
Q ss_pred CcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH
Q 045564 155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGS 234 (296)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F 234 (296)
+...++++|++.|++.+...+...+++.|.+|++ +|++.++++....++|..++|.+++++.+..|||+.|
T Consensus 87 --------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 157 (375)
T 2gfp_A 87 --------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT-QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACY 157 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHH
Confidence 4567888999999999999999999999999844 6899999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHH
Q 045564 235 GLNIAANLAGVV 246 (296)
Q Consensus 235 ~i~~~~~~~~~~ 246 (296)
++.++..++..+
T Consensus 158 ~~~~~~~~~~~~ 169 (375)
T 2gfp_A 158 LFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988876665554
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.59 E-value=3.6e-14 Score=135.19 Aligned_cols=163 Identities=7% Similarity=-0.049 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHH
Q 045564 87 INSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAV 166 (296)
Q Consensus 87 ~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~ 166 (296)
...+++++++.++..++++++|+++|| +|||+++.++.+++.++.++.+++........ ....... .-..+...
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~---~~~~~~~--~~a~~~~~ 128 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSIN---PDNTVPV--YLAGYVPE 128 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS---SSSSCCG--GGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---chhHHHH--HHhhhHHH
Confidence 455678889999999999999999999 79999999999999999988875421000000 0000000 00135678
Q ss_pred HHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc--------ccchhhHHHHH
Q 045564 167 LYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN--------LSWRLGSGLNI 238 (296)
Q Consensus 167 l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~--------~gw~~~F~i~~ 238 (296)
++++|++.|+|.|+..+..+++++|..|+ ++|+...+++..+..+|.++++.+...+... .+|++.+.+..
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPA-HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASEC 207 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhh
Confidence 99999999999999999999999999994 4789999998899999998888777665432 35777776666
Q ss_pred HHHHHHHHH--HHhCCCchh
Q 045564 239 AANLAGVVI--FLSGKHFYF 256 (296)
Q Consensus 239 ~~~~~~~~~--~~~~~~~~~ 256 (296)
+..++.++. +.+++|||.
T Consensus 208 ~~~~~~~~~~~~~peSp~~L 227 (491)
T 4gc0_A 208 IPALLFLMLLYTVPESPRWL 227 (491)
T ss_dssp HHHHHHHHHGGGSCCCHHHH
T ss_pred hhhhhhhhhhhcCCCChHHH
Confidence 544443333 334566664
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=4.1e-13 Score=125.90 Aligned_cols=174 Identities=14% Similarity=0.075 Sum_probs=138.6
Q ss_pred hhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--chHHHHHHHHHHH
Q 045564 54 TALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL--GSFQVIWISSFIS 128 (296)
Q Consensus 54 ~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i--GR~~~i~i~~~l~ 128 (296)
|.++.+++..+ . .+++...+++.|+.+.+|++..+++.+.+...++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 33444444444 5 777788899999988899999999999999999999999999999999 8 9999988877766
Q ss_pred H-HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564 129 L-LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF 207 (296)
Q Consensus 129 ~-ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y 207 (296)
. ++.+++.+. +. .+...+.+..++.|++.+...+...++..|.+|++ .|++++++++
T Consensus 331 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 388 (451)
T 1pw4_A 331 VTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-AAGTAAGFTG 388 (451)
T ss_dssp HHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh-hhhhHHHHHH
Confidence 5 544433221 10 12345666677888888888888899999999954 7899999999
Q ss_pred HHHHH-HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHh
Q 045564 208 ILTYA-STVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLS 250 (296)
Q Consensus 208 ~~~~i-G~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~ 250 (296)
...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999988877776655543
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=1e-12 Score=122.89 Aligned_cols=154 Identities=8% Similarity=-0.009 Sum_probs=123.5
Q ss_pred hHHHhHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564 66 LGEGWVANLMVY-MIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL 144 (296)
Q Consensus 66 ~~y~~~~~l~~y-l~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~ 144 (296)
..++...+++.| +++.+|++..+++.+.++..++..++.+++|+++|| +|||+.+.++.++..++.+++.+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~----- 346 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG----- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC-----
Confidence 667777899999 888889999999999999999999999999999999 7999999999988877766554332
Q ss_pred CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564 145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI 224 (296)
Q Consensus 145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l 224 (296)
+.. ..+..++.+++.+...+...++..|.+|++ ++.+.++.. ...+|+.++|.+.|++
T Consensus 347 ------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~g~~~~~~~~g~l 404 (438)
T 3o7q_A 347 ------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD--TKYGSSFIV-MTIIGGGIVTPVMGFV 404 (438)
T ss_dssp ------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--HHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred ------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccchhhHHH-HHHHHHHHHHHHHHHH
Confidence 112 233446788888888999999999999844 555555544 4569999999999999
Q ss_pred hcccc-chhhHHHHHHHHHHHHHH
Q 045564 225 EDNLS-WRLGSGLNIAANLAGVVI 247 (296)
Q Consensus 225 ~~~~g-w~~~F~i~~~~~~~~~~~ 247 (296)
.+..| ++..|++.+++.++.++.
T Consensus 405 ~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 405 SDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHH
Confidence 99888 999999877766554443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.38 E-value=7.2e-12 Score=117.92 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=116.1
Q ss_pred hHHHhHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhcccc
Q 045564 66 LGEGWVANLMVYMIQEFHIT---SINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFD 142 (296)
Q Consensus 66 ~~y~~~~~l~~yl~~~lg~s---~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p 142 (296)
.++....+++.|+.+.++.. ....+...++..++..++.+++|+++|| +|||+++.++.++..++.+++++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~--- 310 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT--- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 44444556788887666532 3344566666677788889999999999 7999999888887776654443221
Q ss_pred CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH-HHHHHHHHHHHHHHHH
Q 045564 143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW-FFILTYASTVISSAAF 221 (296)
Q Consensus 143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~-~y~~~~iG~~i~p~v~ 221 (296)
+...+++..++.+++.+...+....+.+|.+|+ +.|++++++ ++.+..+|+.++|.+.
T Consensus 311 --------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 311 --------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp --------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 123444555556666666666678899999995 478888888 5777789999999999
Q ss_pred HhhhccccchhhHHHHHHHHHHHHHHHHh
Q 045564 222 VYIEDNLSWRLGSGLNIAANLAGVVIFLS 250 (296)
Q Consensus 222 ~~l~~~~gw~~~F~i~~~~~~~~~~~~~~ 250 (296)
|++.+..|++..|.+.+++.+++.++.+.
T Consensus 370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 370 GNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 99998888888998888877766655443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.26 E-value=5.6e-13 Score=125.55 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=101.9
Q ss_pred hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564 66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR 145 (296)
Q Consensus 66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~ 145 (296)
.+.....+++.|+++++|++..+++.+.+++.++..++.+++|+++|| +||||++.++.++..++...+......+..
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~- 99 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLL- 99 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444556788999999999999999999999999999999999999999 799999998887665422111110100000
Q ss_pred CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564 146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI-PQHQGIFFNWFFILTYASTVISSAAFVYI 224 (296)
Q Consensus 146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~r~~~f~~~y~~~~iG~~i~p~v~~~l 224 (296)
...++.++.+.+++.|...+...+...+..++ .++++..++......++|..++|.+++++
T Consensus 100 ------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l 161 (417)
T 2cfq_A 100 ------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM 161 (417)
T ss_dssp ------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 00012233333333333333223333333221 12345456665666788999999999999
Q ss_pred hccccchhhHHHHHHHHHH
Q 045564 225 EDNLSWRLGSGLNIAANLA 243 (296)
Q Consensus 225 ~~~~gw~~~F~i~~~~~~~ 243 (296)
.+ .+|++.|++.++..++
T Consensus 162 ~~-~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 162 FT-INNQFVFWLGSGCALI 179 (417)
T ss_dssp HH-HCSHHHHTTTTTTTTT
T ss_pred HH-hchhHHHHHHHHHHHH
Confidence 86 5899999877665433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.25 E-value=5e-11 Score=113.49 Aligned_cols=172 Identities=10% Similarity=0.019 Sum_probs=124.2
Q ss_pred hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHH-----HHHHHHHHHHHHHHhhcc
Q 045564 66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIW-----ISSFISLLGTILLDSTAT 140 (296)
Q Consensus 66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~-----i~~~l~~ig~~~la~~~~ 140 (296)
.++.....++.|+.+.++.+..+.+...+...+...++.++.|+++|| +|||+... ++.++..++.+++.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 298 IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566778889988888887778888888888999999999999999 79986554 666666665554443321
Q ss_pred ccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 045564 141 FDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAA 220 (296)
Q Consensus 141 ~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v 220 (296)
... .+...+...+.+..++.+++.+...+...++..|.+|++ .|+.+.++++...++|..++|.+
T Consensus 377 ~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~-~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 377 LYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA-FNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-CSSSSTHHHHHHHHHHHHHHHHH
T ss_pred hcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000112345666777888999988899999999999954 68999999999999999999999
Q ss_pred HHhhhccccchhhHHHHHHHHHHHHHHHHhCCCc
Q 045564 221 FVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHF 254 (296)
Q Consensus 221 ~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~ 254 (296)
.+++.+. ++.+.|.+.+++.+++.++++...++
T Consensus 442 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 442 VTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp GGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988764 67778888777666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.20 E-value=5e-10 Score=106.36 Aligned_cols=158 Identities=12% Similarity=0.061 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564 71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD 150 (296)
Q Consensus 71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~ 150 (296)
..+..+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++.+.+..... ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~-~~------- 366 (491)
T 4gc0_A 296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFY-TQ------- 366 (491)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHH-TT-------
T ss_pred HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHh-cc-------
Confidence 3344455667788888887777778888899999999999999 79999999998888887766654421 10
Q ss_pred CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 045564 151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED---- 226 (296)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~---- 226 (296)
. ........+..+..+.+ .+..+....+.+|+||++ .|+++.++.+...++|+.+++.+.+.+.+
T Consensus 367 --------~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~-~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 367 --------A-PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNA-IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp --------C-CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTT-THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred --------c-chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111222222222222 234566778999999955 79999999888888999998877766643
Q ss_pred --cccchhhHHHHHHHHHHHHHHH
Q 045564 227 --NLSWRLGSGLNIAANLAGVVIF 248 (296)
Q Consensus 227 --~~gw~~~F~i~~~~~~~~~~~~ 248 (296)
..++.+.|++.+++.+++.++.
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2455667887777666665543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.84 E-value=4.5e-10 Score=103.07 Aligned_cols=150 Identities=13% Similarity=0.034 Sum_probs=111.2
Q ss_pred hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH-HHHHHHHHHhhccccCC
Q 045564 66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI-SLLGTILLDSTATFDSL 144 (296)
Q Consensus 66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l-~~ig~~~la~~~~~p~~ 144 (296)
..++...+++.|+++.+|.+..+++.+.+...++..++.++.|+++|| +||+ +.++..+ ...+...+.... .+
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~~~~~~~~~~-~~-- 287 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLAGLLMWIPDW-FG-- 287 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHTSSSSSHHHH-HH--
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHhh-hc--
Confidence 666677788888888899999999999999999999999999999999 6872 2222222 111111101000 00
Q ss_pred CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564 145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI 224 (296)
Q Consensus 145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l 224 (296)
..+.+.+++..++.+++.+...+...++..|.+| + .|++..++++...++|..++|.+.+++
T Consensus 288 ----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~-~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 288 ----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F-LAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H-HHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred ----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0133455667778889999999999999999998 4 689999999999999999999999999
Q ss_pred hccccchhhHHHHHH
Q 045564 225 EDNLSWRLGSGLNIA 239 (296)
Q Consensus 225 ~~~~gw~~~F~i~~~ 239 (296)
.+..+++..+.+..+
T Consensus 350 ~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 350 PQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hcCCcccHHHHHHHH
Confidence 887778777776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.17 E-value=2.1e-06 Score=82.05 Aligned_cols=91 Identities=11% Similarity=0.008 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc--cc---------hh
Q 045564 164 FAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL--SW---------RL 232 (296)
Q Consensus 164 ~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~--gw---------~~ 232 (296)
...+++..++.+++.+...+...++..|..|++ .|+++.++++...++|..++|.+.+++.+.. +| +.
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~-~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 483 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKA-MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAF 483 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT-CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 345666778889999999999999999999954 7899999999999999999999999987642 23 33
Q ss_pred hHHHHHHHHHHHHHHHHhCCCch
Q 045564 233 GSGLNIAANLAGVVIFLSGKHFY 255 (296)
Q Consensus 233 ~F~i~~~~~~~~~~~~~~~~~~~ 255 (296)
.|++.+++.+++.++++...+++
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 484 QMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666666666665554444443
No 15
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=27.04 E-value=55 Score=25.21 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHHhcCCCcCCCCchhhhccCCccchh
Q 045564 259 IVASVKKWKPVLSSRSEDYYQEQNAVTSL 287 (296)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (296)
++.-+|-++.+..+|+-..|-.+++|..-
T Consensus 71 mLsYiRSKk~E~s~DPy~~YIe~d~W~ek 99 (138)
T 2k21_A 71 MLSYIRSKKLEHSNDPFNVYIESDAWQEK 99 (138)
T ss_dssp HHHHHHHHHHCCCCCTTTTTSCTTTCCSC
T ss_pred HHHHhHhhhccccCCcHHHHHHHHHHHHh
Confidence 34445555668888888889888889754
No 16
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.57 E-value=69 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=10.7
Q ss_pred cchhhHHHHHHHHH-HHHHHHHhC-CCch
Q 045564 229 SWRLGSGLNIAANL-AGVVIFLSG-KHFY 255 (296)
Q Consensus 229 gw~~~F~i~~~~~~-~~~~~~~~~-~~~~ 255 (296)
.|+++|++..++++ ++++.++.+ +++|
T Consensus 334 ~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 334 RWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 58889887666444 333444444 3344
Done!