Query 045564
Match_columns 296
No_of_seqs 245 out of 1758
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 05:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045564.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045564hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.7 9.6E-18 7E-22 154.3 14.3 155 71-247 44-199 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 99.5 1.7E-12 1.3E-16 118.5 20.7 163 66-248 264-427 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.4 1.2E-13 8.6E-18 123.3 10.5 141 83-248 255-396 (417)
4 d1pv7a_ f.38.1.2 (A:) Lactose 99.4 1.8E-12 1.3E-16 115.4 14.0 161 66-247 22-183 (417)
5 d3b45a1 f.51.1.1 (A:91-270) Gl 11.6 2E+02 0.015 20.4 5.8 38 100-137 64-101 (180)
6 d2nr9a1 f.51.1.1 (A:4-192) Glp 7.9 3.4E+02 0.025 19.4 5.8 37 100-136 66-102 (189)
7 d1o82a_ a.64.2.1 (A:) Bacterio 6.4 1.1E+02 0.008 18.4 1.6 20 79-98 2-21 (70)
8 d1zavu1 a.108.1.1 (U:1-30) Rib 5.3 1.1E+02 0.0079 15.6 0.9 9 288-296 21-29 (30)
9 d2iuba2 f.17.3.1 (A:286-349) M 5.0 2E+02 0.015 17.0 2.4 11 229-239 37-47 (64)
10 d1fx8a_ f.19.1.1 (A:) Glycerol 4.6 3.1E+02 0.022 20.9 3.9 21 228-248 225-246 (254)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.74 E-value=9.6e-18 Score=154.31 Aligned_cols=155 Identities=8% Similarity=-0.015 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564 71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD 150 (296)
Q Consensus 71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~ 150 (296)
...+.+++. ++|+|.++.+++.+++.++..++.+++|+++|| +|||+++.++.++..++.++.++.....
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWAT-------- 113 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhh--------
Confidence 344556765 589999999999999999999999999999999 7999999999999998888776543111
Q ss_pred CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cc
Q 045564 151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN-LS 229 (296)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~-~g 229 (296)
.+...+++.|++.|++.|...+...++++|.+|++ +|+..+++++.+.++|..++|.+.+.+... .+
T Consensus 114 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 181 (447)
T d1pw4a_ 114 -----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 181 (447)
T ss_dssp -----------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred -----------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh-cccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence 12457888999999999999999999999999844 789999999999999999999988877654 48
Q ss_pred chhhHHHHHHHHHHHHHH
Q 045564 230 WRLGSGLNIAANLAGVVI 247 (296)
Q Consensus 230 w~~~F~i~~~~~~~~~~~ 247 (296)
|++.|++..++.++..++
T Consensus 182 w~~~~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 182 WHAALYMPAFCAILVALF 199 (447)
T ss_dssp STTCTHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHH
Confidence 999999887755544433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.47 E-value=1.7e-12 Score=118.51 Aligned_cols=163 Identities=15% Similarity=0.020 Sum_probs=122.8
Q ss_pred hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564 66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR 145 (296)
Q Consensus 66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~ 145 (296)
..++...+++.|+.+.++.+..+++....+..+...++.+++|+++|| ++|++......+...+..+.+......+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 339 (447)
T d1pw4a_ 264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNP--- 339 (447)
T ss_dssp HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred hhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHHHHHHHHHHHhcc---
Confidence 777788899999999999999999999999999999999999999999 7876644443333322222222111010
Q ss_pred CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHH-HHHHHHHHHHhh
Q 045564 146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYA-STVISSAAFVYI 224 (296)
Q Consensus 146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~i-G~~i~p~v~~~l 224 (296)
..+....++..++.+++.++..+....+..|.+|+ +.|+++.++.+...++ |..++|.+.+++
T Consensus 340 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~~g~~~~~~~~g~~ 403 (447)
T d1pw4a_ 340 ---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYT 403 (447)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345566667778888888888899999999994 4789999998887777 456789999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHH
Q 045564 225 EDNLSWRLGSGLNIAANLAGVVIF 248 (296)
Q Consensus 225 ~~~~gw~~~F~i~~~~~~~~~~~~ 248 (296)
.+.+||+..|++.+++.+++.+++
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHH
Confidence 999999999988777666655543
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.45 E-value=1.2e-13 Score=123.27 Aligned_cols=141 Identities=9% Similarity=-0.004 Sum_probs=114.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCch
Q 045564 83 HITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKV 162 (296)
Q Consensus 83 g~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~ 162 (296)
+.+....+.......++..++..+.+++.|| +|||+++.++.++..++.+++.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 310 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT----------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC-----------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc-----------------------
Confidence 3445566677778888889999999999999 7999999999988888766655432
Q ss_pred hhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH-HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 045564 163 QFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF-FILTYASTVISSAAFVYIEDNLSWRLGSGLNIAAN 241 (296)
Q Consensus 163 ~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~-y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~ 241 (296)
+.+.+++..++.+++.+...+...+++.|.+|++ .|++.+++. .++..+|..++|.+.|++.|.+|++..|++.+++.
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~ 389 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR-FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG-GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 2356667778889999999999999999999954 789999874 45677999999999999999999999999888766
Q ss_pred HHHHHHH
Q 045564 242 LAGVVIF 248 (296)
Q Consensus 242 ~~~~~~~ 248 (296)
++..++.
T Consensus 390 ~~~~~~~ 396 (417)
T d1pv7a_ 390 LGFTLIS 396 (417)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.39 E-value=1.8e-12 Score=115.40 Aligned_cols=161 Identities=12% Similarity=0.022 Sum_probs=103.2
Q ss_pred hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564 66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR 145 (296)
Q Consensus 66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~ 145 (296)
........++.|+++++|+|.++.+++.+++.++..++.++.|+++|| +||||+++++.++..++.+++.+....+
T Consensus 22 ~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~--- 97 (417)
T d1pv7a_ 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGP--- 97 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHHTHHHHHHHTHHH---
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 333345678889999999999999999999999999999999999999 7999999999888887776666543110
Q ss_pred CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCC-CccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564 146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFE-IPQHQGIFFNWFFILTYASTVISSAAFVYI 224 (296)
Q Consensus 146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~-~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l 224 (296)
......++.+.+.+.+.+...........+..+ +.+++....+........+..++|.+++++
T Consensus 98 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (417)
T d1pv7a_ 98 ----------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM 161 (417)
T ss_dssp ----------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccc
Confidence 011112233333333333333322222222222 122333445555666778888999999988
Q ss_pred hccccchhhHHHHHHHHHHHHHH
Q 045564 225 EDNLSWRLGSGLNIAANLAGVVI 247 (296)
Q Consensus 225 ~~~~gw~~~F~i~~~~~~~~~~~ 247 (296)
.+. +|+..+.+......+..++
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~ 183 (417)
T d1pv7a_ 162 FTI-NNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp HHH-CHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cccccccchhhHHHHHHHH
Confidence 764 5555555555444333333
No 5
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=11.56 E-value=2e+02 Score=20.43 Aligned_cols=38 Identities=21% Similarity=0.082 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHh
Q 045564 100 VNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDS 137 (296)
Q Consensus 100 ~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~ 137 (296)
..+.....|..-+|.+|++|.+.+..+...+|.+...+
T Consensus 64 N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~ 101 (180)
T d3b45a1 64 NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQK 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHH
Confidence 34444455666666589999877666655555554443
No 6
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=7.87 E-value=3.4e+02 Score=19.37 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHH
Q 045564 100 VNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLD 136 (296)
Q Consensus 100 ~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la 136 (296)
..+.....|..-+|.+|+++.+.+......+|.+...
T Consensus 66 N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~ 102 (189)
T d2nr9a1 66 NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQN 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344444566666658999987776655555555433
No 7
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.41 E-value=1.1e+02 Score=18.45 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=14.5
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 045564 79 IQEFHITSINSALISNIVNG 98 (296)
Q Consensus 79 ~~~lg~s~~~a~~i~~~~~~ 98 (296)
.++||++.+.++.+.++...
T Consensus 2 akefgipa~ia~~vlniv~a 21 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVLNVVEA 21 (70)
T ss_dssp HHHHCCCHHHHHHHHHHHHT
T ss_pred chhhCCcHHHHHHHHHhhcc
Confidence 46788888888777666554
No 8
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.28 E-value=1.1e+02 Score=15.56 Aligned_cols=9 Identities=44% Similarity=0.785 Sum_probs=4.2
Q ss_pred HHHhhhhcC
Q 045564 288 MTATLEQKF 296 (296)
Q Consensus 288 ~~~~~~~~~ 296 (296)
.+..||.||
T Consensus 21 lvk~ledkf 29 (30)
T d1zavu1 21 LVKKLEDKF 29 (30)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 344455554
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.98 E-value=2e+02 Score=16.99 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=2.5
Q ss_pred cchhhHHHHHH
Q 045564 229 SWRLGSGLNIA 239 (296)
Q Consensus 229 gw~~~F~i~~~ 239 (296)
+|.++|++..+
T Consensus 37 ~~~~~~~~~~~ 47 (64)
T d2iuba2 37 RWKWGYPVVLA 47 (64)
T ss_dssp -----CHHHHH
T ss_pred CccHHHHHHHH
Confidence 34444444333
No 10
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=4.59 E-value=3.1e+02 Score=20.90 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=11.6
Q ss_pred ccchhhHHHHHH-HHHHHHHHH
Q 045564 228 LSWRLGSGLNIA-ANLAGVVIF 248 (296)
Q Consensus 228 ~gw~~~F~i~~~-~~~~~~~~~ 248 (296)
+.+.|++++.=+ ..+++..++
T Consensus 225 ~~~~wvy~vgP~~Ga~ia~~~y 246 (254)
T d1fx8a_ 225 IPYFLVPLFGPIVGAIVGAFAY 246 (254)
T ss_dssp SCTTHHHHHTTHHHHHHHHHHH
T ss_pred CCeeehHhHHHHHHHHHHHHHH
Confidence 446778877433 444455444
Done!