Query 045565
Match_columns 83
No_of_seqs 107 out of 153
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 05:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 98.2 1.2E-06 4.3E-11 59.9 4.0 28 56-83 15-42 (103)
2 1vd2_A Protein kinase C, IOTA 96.6 0.0027 9.2E-08 41.4 4.2 29 55-83 12-40 (89)
3 2jrh_A Mitogen-activated prote 96.2 0.0052 1.8E-07 41.4 3.8 27 57-83 12-38 (94)
4 2npt_B Mitogen-activated prote 95.9 0.0074 2.5E-07 41.0 3.8 27 57-83 28-54 (100)
5 2c60_A Human mitogen-activated 95.9 0.0077 2.6E-07 41.6 3.8 27 57-83 39-65 (111)
6 1oey_A P67-PHOX, neutrophil cy 93.3 0.076 2.6E-06 34.3 3.3 28 53-82 10-37 (83)
7 1q1o_A Cell division control p 93.3 0.087 3E-06 35.1 3.7 24 58-81 22-45 (98)
8 1pqs_A Cell division control p 89.4 0.34 1.2E-05 30.6 3.3 24 59-82 2-25 (77)
9 3a9j_A Ubiquitin; protein comp 85.2 1.3 4.5E-05 24.7 3.8 31 53-83 5-35 (76)
10 2bwf_A Ubiquitin-like protein 83.6 2.2 7.4E-05 24.1 4.3 27 57-83 12-38 (77)
11 4dwf_A HLA-B-associated transc 82.0 2.3 7.7E-05 25.1 4.1 31 53-83 10-40 (90)
12 1ndd_A NEDD8, protein (ubiquit 81.8 1.7 5.9E-05 24.2 3.4 29 55-83 7-35 (76)
13 2dzi_A Ubiquitin-like protein 81.6 2.5 8.6E-05 24.0 4.1 27 57-83 16-42 (81)
14 3mtn_B UBA80, ubcep1, ubiquiti 80.1 2.5 8.4E-05 24.2 3.7 30 54-83 9-38 (85)
15 1ip9_A BEM1 protein; ubiquitin 80.0 1.9 6.5E-05 28.2 3.5 26 55-80 18-43 (85)
16 4eew_A Large proline-rich prot 79.7 3 0.0001 24.5 4.1 31 53-83 22-52 (88)
17 1yx5_B Ubiquitin; proteasome, 78.9 2.7 9.3E-05 25.4 3.8 31 53-83 5-35 (98)
18 3phx_B Ubiquitin-like protein 78.1 3 0.0001 23.9 3.7 30 54-83 10-39 (79)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 77.9 3.4 0.00012 24.0 4.0 27 57-83 16-42 (87)
20 3dbh_I NEDD8; cell cycle, acti 77.0 3.4 0.00012 23.9 3.7 28 56-83 20-47 (88)
21 1v86_A DNA segment, CHR 7, way 76.6 10 0.00036 23.1 7.0 37 31-83 15-51 (95)
22 3k9o_B Ubiquitin, UBB+1; E2-25 75.7 4 0.00014 24.2 3.9 31 53-83 6-36 (96)
23 2kd0_A LRR repeats and ubiquit 75.0 4.2 0.00014 24.3 3.9 28 56-83 19-46 (85)
24 2kzr_A Ubiquitin thioesterase 75.0 2.2 7.4E-05 25.6 2.5 30 53-83 5-35 (86)
25 3n3k_B Ubiquitin; hydrolase, p 74.8 3.1 0.00011 23.8 3.1 30 54-83 9-38 (85)
26 2kk8_A Uncharacterized protein 74.7 4.8 0.00016 24.2 4.1 30 54-83 16-45 (84)
27 4hcn_B Polyubiquitin, ubiquiti 74.1 4.4 0.00015 24.6 3.9 29 55-83 29-57 (98)
28 2hj8_A Interferon-induced 17 k 74.1 5 0.00017 23.9 4.0 28 56-83 12-39 (88)
29 1sif_A Ubiquitin; hydrophobic 73.7 4.5 0.00015 24.1 3.8 30 54-83 15-44 (88)
30 3v6c_B Ubiquitin; structural g 73.3 4.6 0.00016 24.0 3.7 28 56-83 25-52 (91)
31 4fbj_B NEDD8; effector-HOST ta 73.2 5 0.00017 23.9 3.9 31 53-83 5-35 (88)
32 1wgg_A Ubiquitin carboxyl-term 70.9 7 0.00024 24.0 4.3 27 57-83 15-42 (96)
33 1v5t_A 8430435I17RIK protein; 70.8 4.1 0.00014 24.6 3.1 27 57-83 15-42 (90)
34 2bkf_A Zinc-finger protein NBR 68.7 3.6 0.00012 26.9 2.6 29 55-83 12-42 (87)
35 2ojr_A Ubiquitin; lanthide-bin 68.3 7 0.00024 24.4 3.9 27 57-83 44-70 (111)
36 1ttn_A DC-UBP, dendritic cell- 67.9 5.8 0.0002 24.5 3.4 27 57-83 32-58 (106)
37 2kdi_A Ubiquitin, vacuolar pro 67.5 7.2 0.00024 24.7 3.9 31 53-83 14-44 (114)
38 1wxv_A BAG-family molecular ch 67.4 8.1 0.00028 22.9 3.9 25 59-83 17-46 (92)
39 3q3f_A Ribonuclease/ubiquitin 67.3 13 0.00044 26.3 5.5 50 34-83 87-140 (189)
40 3m62_B UV excision repair prot 67.1 4.2 0.00015 25.3 2.7 31 53-83 6-36 (106)
41 1wj6_A KIAA0049 protein, RSGI 67.0 5.1 0.00018 26.9 3.2 28 56-83 21-50 (101)
42 3b08_A Polyubiquitin-C, ubiqui 65.2 19 0.00067 22.3 5.6 31 53-83 81-111 (152)
43 1wy8_A NP95-like ring finger p 65.2 11 0.00038 21.9 4.2 25 59-83 19-44 (89)
44 2uyz_B Small ubiquitin-related 64.7 8.8 0.0003 21.8 3.6 28 56-83 11-38 (79)
45 2wyq_A HHR23A, UV excision rep 64.2 12 0.0004 21.4 4.1 28 54-81 11-38 (85)
46 3vdz_A Ubiquitin-40S ribosomal 63.2 10 0.00034 23.8 3.9 28 56-83 43-70 (111)
47 2faz_A Ubiquitin-like containi 62.0 13 0.00046 20.9 4.0 27 57-83 11-39 (78)
48 1wmh_B Partitioning defective- 61.9 10 0.00035 24.4 3.8 28 55-82 12-41 (86)
49 1wjn_A Tubulin-folding protein 61.9 8.5 0.00029 23.3 3.3 27 57-83 21-47 (97)
50 3u30_A Ubiquitin, linear DI-ub 59.3 13 0.00044 24.4 4.1 29 55-83 27-55 (172)
51 1wyw_B Ubiquitin-like protein 58.9 12 0.0004 22.8 3.6 27 57-83 30-56 (97)
52 1wx8_A Riken cDNA 4931431F19; 58.7 15 0.00052 21.8 4.0 25 59-83 27-51 (96)
53 3m63_B Ubiquitin domain-contai 58.6 3.9 0.00013 25.5 1.3 27 57-83 36-62 (101)
54 2kan_A Uncharacterized protein 58.5 13 0.00045 22.6 3.8 24 60-83 26-49 (94)
55 1v5o_A 1700011N24RIK protein; 57.3 14 0.00049 22.6 3.8 26 58-83 21-46 (102)
56 3b1l_X E3 ubiquitin-protein li 61.8 2.2 7.7E-05 24.1 0.0 30 54-83 6-35 (76)
57 3b08_A Polyubiquitin-C, ubiqui 56.0 15 0.00052 22.8 3.8 29 55-83 7-35 (152)
58 2klc_A Ubiquilin-1; ubiquitin- 55.4 18 0.00061 22.2 4.0 24 60-83 36-59 (101)
59 2l7r_A Ubiquitin-like protein 55.3 13 0.00044 22.4 3.3 26 58-83 27-52 (93)
60 1wx7_A Ubiquilin 3; ubiquitin- 53.6 18 0.00061 22.1 3.8 22 62-83 30-51 (106)
61 2kkc_A Sequestosome-1; P62, PB 52.6 11 0.00039 24.6 2.9 26 57-82 19-55 (102)
62 1uel_A HHR23B, UV excision rep 52.4 20 0.00068 21.5 3.8 28 54-81 6-33 (95)
63 1we7_A SF3A1 protein; structur 52.0 16 0.00053 22.9 3.4 28 56-83 43-70 (115)
64 1j8c_A Ubiquitin-like protein 49.9 23 0.00079 22.8 4.1 24 60-83 43-66 (125)
65 1y8x_B Ubiquitin-activating en 49.2 9.1 0.00031 24.8 2.0 24 57-80 3-26 (98)
66 2pjh_A Protein NPL4, nuclear p 48.4 9.1 0.00031 23.2 1.8 27 56-83 12-38 (80)
67 1yqb_A Ubiquilin 3; structural 48.2 21 0.00073 21.9 3.5 22 62-83 35-56 (100)
68 1we6_A Splicing factor, putati 46.9 24 0.00081 21.8 3.6 27 57-83 39-66 (111)
69 3u30_A Ubiquitin, linear DI-ub 46.4 58 0.002 21.2 6.4 30 54-83 102-131 (172)
70 1wf9_A NPL4 family protein; be 44.3 26 0.00089 21.7 3.5 26 57-83 16-42 (107)
71 3rt3_B Ubiquitin-like protein 44.2 33 0.0011 21.9 4.1 30 54-83 8-37 (159)
72 2dzm_A FAS-associated factor 1 43.1 30 0.001 21.9 3.7 26 58-83 18-43 (100)
73 3rt3_B Ubiquitin-like protein 42.4 30 0.001 22.1 3.7 30 54-83 87-116 (159)
74 1wia_A Hypothetical ubiquitin- 41.7 23 0.00077 21.0 2.8 25 57-81 16-40 (95)
75 3l0w_B Monoubiquitinated proli 39.0 36 0.0012 22.9 3.8 30 54-83 6-35 (169)
76 1gff_3 Bacteriophage G4 capsid 36.3 15 0.00052 19.4 1.2 8 52-59 16-23 (26)
77 2ktr_A Sequestosome-1; autopha 35.5 27 0.00091 23.5 2.6 26 57-82 34-70 (117)
78 1v6e_A Cytoskeleton-associated 34.8 35 0.0012 20.5 2.9 23 61-83 21-43 (95)
79 1x1m_A Ubiquitin-like protein 34.7 34 0.0012 21.1 2.9 30 53-82 17-58 (107)
80 2kj6_A Tubulin folding cofacto 34.1 40 0.0014 21.0 3.2 24 60-83 28-51 (97)
81 1k8r_B Protein kinase BYR2; si 33.5 33 0.0011 23.4 2.8 23 53-77 3-27 (110)
82 4b6w_A Tubulin-specific chaper 32.9 32 0.0011 20.9 2.5 21 63-83 19-39 (86)
83 3u5e_m 60S ribosomal protein L 32.0 9.7 0.00033 24.3 0.0 30 54-83 6-35 (128)
84 1wgd_A Homocysteine-responsive 31.5 54 0.0019 19.3 3.4 23 60-82 21-43 (93)
85 2kjr_A CG11242; UBL, ubiquitin 31.3 59 0.002 20.0 3.6 24 60-83 29-52 (95)
86 1t0y_A Tubulin folding cofacto 30.7 41 0.0014 21.4 2.8 23 61-83 20-42 (122)
87 1v2y_A 3300001G02RIK protein; 29.0 52 0.0018 21.1 3.1 26 57-82 16-41 (105)
88 1m06_J J protein, small core p 28.8 15 0.00052 19.4 0.4 10 51-60 14-23 (26)
89 3r8n_R 30S ribosomal protein S 28.0 4.7 0.00016 24.0 -1.9 15 36-51 13-27 (55)
90 1uh6_A Ubiquitin-like 5; beta- 28.0 69 0.0023 20.5 3.6 26 58-83 38-63 (100)
91 2daf_A FLJ35834 protein; hypot 27.4 71 0.0024 21.5 3.7 27 57-83 25-51 (118)
92 3shq_A UBLCP1; phosphatase, hy 27.3 59 0.002 24.3 3.6 27 57-83 13-39 (320)
93 1wju_A NEDD8 ultimate buster-1 25.2 77 0.0026 20.2 3.5 26 58-83 29-54 (100)
94 3ibz_A Putative tellurium resi 24.7 65 0.0022 22.7 3.3 21 45-65 65-93 (191)
95 2i1s_A Hypothetical protein; m 24.7 70 0.0024 21.8 3.3 24 60-83 23-46 (188)
96 3ai5_A Yeast enhanced green fl 24.4 75 0.0026 24.0 3.7 28 56-83 241-268 (307)
97 1wm3_A Ubiquitin-like protein 23.8 1E+02 0.0036 17.5 3.6 27 57-83 10-36 (72)
98 2bpa_3 Protein (subunit of bac 23.7 16 0.00056 20.5 -0.1 9 52-60 28-36 (37)
99 2ivn_A O-sialoglycoprotein end 23.5 95 0.0032 22.5 4.0 27 57-83 140-166 (330)
100 3nzo_A UDP-N-acetylglucosamine 23.4 40 0.0014 24.6 2.0 27 57-83 253-282 (399)
101 2eke_C Ubiquitin-like protein 21.9 1.2E+02 0.004 19.4 3.8 26 58-83 40-65 (106)
102 2jo8_A Serine/threonine-protei 21.2 46 0.0016 19.8 1.6 15 67-81 8-22 (51)
103 3plu_A Ubiquitin-like modifier 21.1 1.2E+02 0.0041 19.4 3.7 28 56-83 29-56 (93)
104 2kvr_A Ubiquitin carboxyl-term 20.7 84 0.0029 20.7 3.0 24 60-83 57-80 (130)
105 2io1_B Small ubiquitin-related 20.6 1.3E+02 0.0044 18.4 3.7 27 57-83 16-42 (94)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=98.19 E-value=1.2e-06 Score=59.87 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=26.9
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.+||+|||.|+|.|+|.||.+|+.++||
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fG 42 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFG 42 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHS
T ss_pred ecCeEEEEeccCCccHHHHHHHHHHHhC
Confidence 5899999999999999999999999998
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.57 E-value=0.0027 Score=41.41 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=26.1
Q ss_pred EecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 55 YVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 55 YvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
|..|+.|++.|+.+|+|.+|..|+.++|+
T Consensus 12 ~~~gdi~~~~v~~~i~~~~L~~kv~~~~~ 40 (89)
T 1vd2_A 12 YYRGDIMITHFEPSISFEGLCNEVRDMCS 40 (89)
T ss_dssp ESSSCEEEEEECTTCCHHHHHHHHHHHTT
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44578999999999999999999999985
No 3
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=96.16 E-value=0.0052 Score=41.45 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=25.6
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
-||.|||-++|.+.|.||.+|+...+|
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afG 38 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFG 38 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhC
Confidence 489999999999999999999999887
No 4
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=95.93 E-value=0.0074 Score=41.05 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=25.5
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
-||.|||-++|.+.|.||.+|+...||
T Consensus 28 ~gEkRIi~f~RPv~f~el~~kv~~afG 54 (100)
T 2npt_B 28 RGEKRILQFPRPVKLEDLRSKAKIAFG 54 (100)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHT
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhC
Confidence 489999999999999999999999887
No 5
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=95.88 E-value=0.0077 Score=41.61 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=25.5
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
-||.|||-++|.+.|.||.+|+...+|
T Consensus 39 ~gEKRIiqf~RPvkf~dl~qkv~~afG 65 (111)
T 2c60_A 39 NGERRIIAFSRPVKYEDVEHKVTTVFG 65 (111)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHS
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhC
Confidence 489999999999999999999999887
No 6
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.29 E-value=0.076 Score=34.26 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.6
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhh
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLA 82 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~ 82 (83)
.+|- +|-.|.|+++|+|++|..|+++-.
T Consensus 10 V~~~--~tvairvp~~~~y~~L~~~l~~kL 37 (83)
T 1oey_A 10 VHYK--YTVVMKTQPGLPYSQVRDMVSKKL 37 (83)
T ss_dssp EESS--SEEEEEECTTCCHHHHHHHHHHHT
T ss_pred EEEE--EEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 799999999999999999998743
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=93.26 E-value=0.087 Score=35.06 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCChHHHHHHHHhh
Q 045565 58 GDTRIVAVHRSSTFSTLLTKLSKL 81 (83)
Q Consensus 58 GeTRIisV~R~isf~eL~~Kls~l 81 (83)
++++.|.|+.+|+|.+|..|+.+-
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~K 45 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSK 45 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHH
Confidence 689999999999999999998764
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=89.42 E-value=0.34 Score=30.57 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHhhh
Q 045565 59 DTRIVAVHRSSTFSTLLTKLSKLA 82 (83)
Q Consensus 59 eTRIisV~R~isf~eL~~Kls~l~ 82 (83)
+++.|.|+.+|+|.+|..|+.+-.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl 25 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKI 25 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999997643
No 9
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=85.16 E-value=1.3 Score=24.68 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.8
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++...|++..+.|+.+.+..+|.+++++..|
T Consensus 5 vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~ 35 (76)
T 3a9j_A 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEG 35 (76)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EEcCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 3445678888999999999999999998764
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=83.60 E-value=2.2 Score=24.06 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.6
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+|.+..+.|+.+.+..+|.+++++..|
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~ 38 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANG 38 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhC
Confidence 677778899999999999999998765
No 11
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=82.02 E-value=2.3 Score=25.10 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=26.7
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++...|.+..|.|+.+.+..+|.+++.+..|
T Consensus 10 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 40 (90)
T 4dwf_A 10 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVS 40 (90)
T ss_dssp EEETTCCEEEEEEETTCBHHHHHHHHHHHHT
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhC
Confidence 4566788999999999999999999998764
No 12
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=81.79 E-value=1.7 Score=24.16 Aligned_cols=29 Identities=7% Similarity=0.224 Sum_probs=24.5
Q ss_pred EecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 55 YVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 55 YvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
...|++..+.|+.+.+..+|.+++++..|
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~~ 35 (76)
T 1ndd_A 7 TLTGKEIEIDIEPTDKVERIKERVEEKEG 35 (76)
T ss_dssp CTTSCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEECCCChHHHHHHHHHHHHC
Confidence 34577888999999999999999998764
No 13
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.62 E-value=2.5 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=22.9
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+|++..+.|+.+.+..+|.+++++..|
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~ 42 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLN 42 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 456667899999999999999998765
No 14
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=80.12 E-value=2.5 Score=24.17 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.2
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+...|++..|.|+.+.+..+|.+++.+..|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ 38 (85)
T 3mtn_B 9 KTLTGKTITLEVEPSDTIENVKAKIQDKEG 38 (85)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHC
Confidence 344678888999999999999999998764
No 15
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=79.98 E-value=1.9 Score=28.19 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.6
Q ss_pred EecCceeEEEEcCCCChHHHHHHHHh
Q 045565 55 YVGGDTRIVAVHRSSTFSTLLTKLSK 80 (83)
Q Consensus 55 YvGGeTRIisV~R~isf~eL~~Kls~ 80 (83)
|.-+|--+|.||-+|+|++|..|+.+
T Consensus 18 yy~DDIiAIrvP~di~~~~L~dKi~~ 43 (85)
T 1ip9_A 18 YYKDDIFALMLKGDTTYKELRSKIAP 43 (85)
T ss_dssp CBTTCCEEEEECSCCCHHHHHHHHHH
T ss_pred EecCcEEEEECCCCCCHHHHHHHHHH
Confidence 33456678999999999999999875
No 16
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=79.69 E-value=3 Score=24.47 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=26.2
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++..+|.+..+.|+.+.+..+|.+++.+..|
T Consensus 22 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 52 (88)
T 4eew_A 22 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVS 52 (88)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHHT
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhC
Confidence 3556778888999999999999999998764
No 17
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=78.90 E-value=2.7 Score=25.36 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.9
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++...|++..+.|+.+.+..+|.+++++..|
T Consensus 5 Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g 35 (98)
T 1yx5_B 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEG 35 (98)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHTC
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 3455678888999999999999999998764
No 18
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=78.07 E-value=3 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.5
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+...|.+..+.|+.+.+..+|.+++.+..|
T Consensus 10 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 39 (79)
T 3phx_B 10 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEG 39 (79)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHT
T ss_pred EeCCCCEEEEEECCcChHHHHHHHHHhhcC
Confidence 445778888999999999999999988754
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.94 E-value=3.4 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.2
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.|++..+.|+.+.+..+|.+++++..|
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~g 42 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQG 42 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTC
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhC
Confidence 466777899999999999999998764
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=76.98 E-value=3.4 Score=23.87 Aligned_cols=28 Identities=7% Similarity=0.254 Sum_probs=23.6
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..|.+..|.|+.+.+..+|.+++.+..|
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g 47 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEG 47 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
Confidence 3566777899999999999999998765
No 21
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.58 E-value=10 Score=23.06 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=29.0
Q ss_pred CCeEEEEeecCCEeeeCCCCCCeEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 31 LTRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 31 ~~kvKllCSyGGrIlPRp~Dg~LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
...|++.+.++|+. ..|.|+.+.+..+|.+++.+..|
T Consensus 15 ~~~~~i~Vk~~g~~----------------~~i~v~~~~TV~~LK~~I~~~tg 51 (95)
T 1v86_A 15 KELVDLKIIWNKTK----------------HDVKVPLDSTGSELKQKIHSITG 51 (95)
T ss_dssp CCCEEEEEEETTEE----------------EEEEECTTSBHHHHHHHHHHHHC
T ss_pred CceEEEEEEECCEE----------------EEEEECCCCcHHHHHHHHHHHHC
Confidence 35577777666653 34789999999999999998875
No 22
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=75.66 E-value=4 Score=24.19 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=26.4
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++...|.+..|.|+.+.+..+|.+++.+..|
T Consensus 6 vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g 36 (96)
T 3k9o_B 6 VKTLTGKTITLEVEPSDTIENVKAKIQDKEG 36 (96)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhC
Confidence 4556788888999999999999999998765
No 23
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=75.03 E-value=4.2 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.2
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.+|++..|.|+.+.+..+|.+++++..|
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~g 46 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITN 46 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHC
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHC
Confidence 4677778899999999999999998765
No 24
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=74.96 E-value=2.2 Score=25.55 Aligned_cols=30 Identities=13% Similarity=0.401 Sum_probs=24.3
Q ss_pred eEEecCceeEEE-EcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVA-VHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIis-V~R~isf~eL~~Kls~l~G 83 (83)
+|.-+|. ++|. |+.+.+..+|.+++++..|
T Consensus 5 vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~g 35 (86)
T 2kzr_A 5 CKAKGGT-HLLQGLSSRTRLRELQGQIAAITG 35 (86)
T ss_dssp EEETTEE-EEECSCCTTCBHHHHHHHHHHHTC
T ss_pred EEcCCCC-EEeeecCCCCCHHHHHHHHHHHhC
Confidence 5667784 4577 9999999999999988654
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=74.78 E-value=3.1 Score=23.81 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.2
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+...|++..|.|+.+.+..+|.+++.+..|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ 38 (85)
T 3n3k_B 9 KTLMGRTIILEVEPSDTIENVKAKIQDKEG 38 (85)
T ss_dssp ECGGGCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 445677888999999999999999998764
No 26
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=74.68 E-value=4.8 Score=24.16 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=26.0
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+...|++.-|.|+.+.+..+|.+++.+..|
T Consensus 16 k~l~g~~~~l~v~~~~TV~~LK~~I~~~~g 45 (84)
T 2kk8_A 16 ENLNGSSFELEVDYRDTLLVVKQKIERSQH 45 (84)
T ss_dssp EETTSCEEEEEECTTSBHHHHHHHHHHHHT
T ss_pred EecCCcEEEEEECCCChHHHHHHHHHHHHC
Confidence 455788888999999999999999998765
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=74.14 E-value=4.4 Score=24.62 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.1
Q ss_pred EecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 55 YVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 55 YvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
...|++..|.|+.+.+..+|.+++.+..|
T Consensus 29 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~g 57 (98)
T 4hcn_B 29 TLTGKTITLEVESSDTIDNVKSKIQDKEG 57 (98)
T ss_dssp ETTCCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHhC
Confidence 34566777899999999999999998765
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=74.10 E-value=5 Score=23.86 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.8
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..|.+..+.|+.+.+..+|.+++++..|
T Consensus 12 ~~g~~~~~~v~~~~TV~~LK~~I~~~~g 39 (88)
T 2hj8_A 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEG 39 (88)
T ss_dssp TTSCEEEEEEESSSBHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhC
Confidence 3467778999999999999999998765
No 29
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=73.67 E-value=4.5 Score=24.12 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.5
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+-..|++..+.|+.+.+..+|.+++++..|
T Consensus 15 ~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g 44 (88)
T 1sif_A 15 KTLTGKTFTVEMEPSDTIENLKAKIQDKEG 44 (88)
T ss_dssp EETTSCEEEEECCTTSBHHHHHHHHHHHHC
T ss_pred EeCCCCEEEEEECCCChHHHHHHHHHHHHC
Confidence 445678888999999999999999998764
No 30
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=73.35 E-value=4.6 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.7
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..|++.-|.|+.+.+..+|.+++.+..|
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~g 52 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEG 52 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhC
Confidence 3566777899999999999999998765
No 31
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=73.18 E-value=5 Score=23.93 Aligned_cols=31 Identities=6% Similarity=0.258 Sum_probs=26.2
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++...|.+..|.|+.+.+..+|.+++.+..|
T Consensus 5 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g 35 (88)
T 4fbj_B 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEG 35 (88)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHHC
Confidence 3445788888999999999999999998765
No 32
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=70.89 E-value=7 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.4
Q ss_pred cCcee-EEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTR-IVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTR-IisV~R~isf~eL~~Kls~l~G 83 (83)
+|++. -|.|+.+.++.+|.+++.+..|
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tg 42 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTG 42 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTC
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHC
Confidence 45555 3899999999999999998875
No 33
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=70.77 E-value=4.1 Score=24.58 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.3
Q ss_pred cCceeEE-EEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIV-AVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIi-sV~R~isf~eL~~Kls~l~G 83 (83)
+|++..| .|+.+.+..+|.+++.+..|
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~g 42 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTG 42 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 4555557 89999999999999998765
No 34
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=68.71 E-value=3.6 Score=26.89 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=23.5
Q ss_pred EecCceeEEEE--cCCCChHHHHHHHHhhhC
Q 045565 55 YVGGDTRIVAV--HRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 55 YvGGeTRIisV--~R~isf~eL~~Kls~l~G 83 (83)
+..||++.+-| .|+++|.||.+.+...||
T Consensus 12 ~f~ge~~rf~vs~~~~~tweel~~mvk~~f~ 42 (87)
T 2bkf_A 12 TFKNEIQSFLVSDPENTTWADIEAMVKVSFD 42 (87)
T ss_dssp EETTEEEEEEESCGGGCCHHHHHHHHHHHHT
T ss_pred EEcCCeeEEEeccCCCCCHHHHHHHHHHHcC
Confidence 34688999555 679999999999988775
No 35
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=68.34 E-value=7 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.8
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.|.+..+.|+.+.+..+|.+++++..|
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~g 70 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEG 70 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 356677899999999999999998764
No 36
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.90 E-value=5.8 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=22.5
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+|.+..+.|+.+.+..+|..++.+..|
T Consensus 32 ~g~~~~l~v~~~~TV~~LK~~I~~~~g 58 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEG 58 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 455666899999999999999998765
No 37
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=67.47 E-value=7.2 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.8
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++...|++..+.|+.+.+..+|.+++++..|
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g 44 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEG 44 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHC
Confidence 4556788999999999999999999998765
No 38
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.36 E-value=8.1 Score=22.91 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=20.4
Q ss_pred ceeEEEEcCC-----CChHHHHHHHHhhhC
Q 045565 59 DTRIVAVHRS-----STFSTLLTKLSKLAG 83 (83)
Q Consensus 59 eTRIisV~R~-----isf~eL~~Kls~l~G 83 (83)
.+..|.|+.+ .+..+|.+++++..|
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g 46 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIG 46 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTC
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHC
Confidence 3446788885 999999999998765
No 39
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=67.30 E-value=13 Score=26.27 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=39.6
Q ss_pred EEEEeecCCEeeeCCCCC----CeEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 34 VRFMCSFGGKILPRPHDN----QLRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 34 vKllCSyGGrIlPRp~Dg----~LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
-++++|-.|-+.+-..-- .++-..|.|..|.|+.+.+..+|.+++.+..|
T Consensus 87 ~r~~~s~dg~~y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g 140 (189)
T 3q3f_A 87 DRILYSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 140 (189)
T ss_dssp CEEEEETTCCEEEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred cceEecCCCcEEEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC
Confidence 488999888887643322 24556899999999999999999999998765
No 40
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=67.11 E-value=4.2 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.7
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++..+|.+..|.|+.+.+..+|.+++.+..|
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g 36 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSIS 36 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTT
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 4556788989999999999999999998765
No 41
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=66.98 E-value=5.1 Score=26.87 Aligned_cols=28 Identities=7% Similarity=0.092 Sum_probs=22.5
Q ss_pred ecCceeEEEE--cCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAV--HRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV--~R~isf~eL~~Kls~l~G 83 (83)
..||++.+-| .|+++|.||.+.+...||
T Consensus 21 f~ge~~rF~Vs~~~~~tweel~~mvk~~f~ 50 (101)
T 1wj6_A 21 FKNEIQSFLVSDPENTTWADIEAMVKVSFD 50 (101)
T ss_dssp ETTEEEEEEESCTTTSCHHHHHHHHHHHHC
T ss_pred EcCCeeEEEecCCCCCCHHHHHHHHHHHcC
Confidence 3577888555 679999999999988775
No 42
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=65.24 E-value=19 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=26.1
Q ss_pred eEEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 53 LRYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 53 LrYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
++...|++..+.|+.+.+..+|.+++.+..|
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g 111 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 4455788889999999999999999988654
No 43
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.20 E-value=11 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.1
Q ss_pred ceeEE-EEcCCCChHHHHHHHHhhhC
Q 045565 59 DTRIV-AVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 59 eTRIi-sV~R~isf~eL~~Kls~l~G 83 (83)
++..| .|+.+.+..+|.+++.+..|
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~g 44 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFD 44 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHC
Confidence 56678 59999999999999998764
No 44
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=64.67 E-value=8.8 Score=21.82 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=23.7
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..|.+..+.|.++.++.+|.+++++..|
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~g 38 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQG 38 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHC
Confidence 4577778999999999999999987654
No 45
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=64.24 E-value=12 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=23.5
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhh
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKL 81 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l 81 (83)
+...|.+..+.|+.+.+..+|.+++++.
T Consensus 11 k~~~g~~~~~~v~~~~TV~~lK~~i~~~ 38 (85)
T 2wyq_A 11 KTLQQQTFKIRMEPDETVKVLKEKIEAE 38 (85)
T ss_dssp EETTSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHhh
Confidence 3445777789999999999999999885
No 46
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=63.24 E-value=10 Score=23.78 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.4
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..|.+..|.|+.+.+..+|.+++.+..|
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~g 70 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEG 70 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3456777899999999999999998764
No 47
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=62.00 E-value=13 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.0
Q ss_pred cCce-eEEE-EcCCCChHHHHHHHHhhhC
Q 045565 57 GGDT-RIVA-VHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeT-RIis-V~R~isf~eL~~Kls~l~G 83 (83)
.|.+ ..+. |+.+.+..+|.+++++..|
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~g 39 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFH 39 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHC
Confidence 4555 3688 9999999999999998765
No 48
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=61.94 E-value=10 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.1
Q ss_pred EecCceeEEEEcCC--CChHHHHHHHHhhh
Q 045565 55 YVGGDTRIVAVHRS--STFSTLLTKLSKLA 82 (83)
Q Consensus 55 YvGGeTRIisV~R~--isf~eL~~Kls~l~ 82 (83)
..++|.|=.+++|+ .+|.+|..++.++.
T Consensus 12 kf~aE~RRFs~d~~~~~~fe~f~~lv~~lh 41 (86)
T 1wmh_B 12 KFDAEFRRFALPRASVSGFQEFSRLLRAVH 41 (86)
T ss_dssp EETTEEEEEEEEGGGCCCHHHHHHHHHHHT
T ss_pred ecCCeeeEeEccCCCCCCHHHHHHHHHHHc
Confidence 56999999999987 89999999998875
No 49
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.88 E-value=8.5 Score=23.34 Aligned_cols=27 Identities=19% Similarity=0.038 Sum_probs=22.9
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.|+..-+.++.+++..+|..|+.+++|
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~g 47 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLK 47 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 445556789999999999999999886
No 50
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=59.32 E-value=13 Score=24.42 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.4
Q ss_pred EecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 55 YVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 55 YvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..+|.+..|.|+.+.+..+|.+++.+..|
T Consensus 27 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~g 55 (172)
T 3u30_A 27 TLTGKTITLEVEPSDTIENVKAKIQDKEG 55 (172)
T ss_dssp ETTTEEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 34577777999999999999999998765
No 51
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=58.93 E-value=12 Score=22.76 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.0
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.|.+..+.|.++.++.+|.+++++..|
T Consensus 30 ~g~~~~l~v~~~~tv~~lK~~i~~~~g 56 (97)
T 1wyw_B 30 DSSEIHFKVKMTTHLKKLKESYCQRQG 56 (97)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 466778999999999999999987654
No 52
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.70 E-value=15 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 59 DTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 59 eTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.+..+.|+.+.+..+|.+++.+..|
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~g 51 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLH 51 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhC
Confidence 3446789999999999999998764
No 53
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=58.55 E-value=3.9 Score=25.47 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.2
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+|++..|.|+.+.+..+|.+++.+..|
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~g 62 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANG 62 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 566777889999999999999998765
No 54
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=58.50 E-value=13 Score=22.61 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHhhhC
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~G 83 (83)
+..|.|+.+.+..+|.+++++..|
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~g 49 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVEN 49 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSS
T ss_pred EEEEEECCCCcHHHHHHHHHHHHC
Confidence 667899999999999999998765
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.29 E-value=14 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 58 GDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 58 GeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
|++..|.|+.+.+..+|.+++.+..|
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~g 46 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESG 46 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 46777899999999999999998765
No 56
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=61.81 E-value=2.2 Score=24.11 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.5
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+...|++..+.|+.+.+..+|.+++++..|
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 35 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQG 35 (76)
Confidence 445678888899999999999999987654
No 57
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=55.98 E-value=15 Score=22.81 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.4
Q ss_pred EecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 55 YVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 55 YvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
-..|.+..+.|+.+.+..+|.+++++..|
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~g 35 (152)
T 3b08_A 7 TLTGKTITLEVEPSDTIENVKAKIQDKEG 35 (152)
T ss_dssp ETTSCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred eCCCCEEEEEECCCCCHHHHHHHHHHHHC
Confidence 34577778999999999999999998765
No 58
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=55.39 E-value=18 Score=22.21 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHhhhC
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~G 83 (83)
+..|.|+.+.+..+|.+++++..|
T Consensus 36 ~~~l~v~~~~TV~~LK~~I~~~~g 59 (101)
T 2klc_A 36 KEEFAVPENSSVQQFKEEISKRFK 59 (101)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
Confidence 446789999999999999998765
No 59
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=55.26 E-value=13 Score=22.39 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 58 GDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 58 GeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
|.+..+.|+.+.+..+|.+++.+..|
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~g 52 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEG 52 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 45567899999999999999998765
No 60
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.60 E-value=18 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhhhC
Q 045565 62 IVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 62 IisV~R~isf~eL~~Kls~l~G 83 (83)
.|.|+.+.+..+|.+++.+..|
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~g 51 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFK 51 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHT
T ss_pred EEEECCCCcHHHHHHHHHHHHC
Confidence 4789999999999999998764
No 61
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=52.59 E-value=11 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.9
Q ss_pred cCceeEEEEcCC-----------CChHHHHHHHHhhh
Q 045565 57 GGDTRIVAVHRS-----------STFSTLLTKLSKLA 82 (83)
Q Consensus 57 GGeTRIisV~R~-----------isf~eL~~Kls~l~ 82 (83)
+.|.|=++++++ .+|.+|..|+.++|
T Consensus 19 ~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lF 55 (102)
T 2kkc_A 19 AREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLF 55 (102)
T ss_dssp EEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHC
T ss_pred CCceEEEEeccCCCcccccccccccHHHHHHHHHHHc
Confidence 689999999874 48999999999886
No 62
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.40 E-value=20 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=23.8
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhh
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKL 81 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l 81 (83)
+...|++..+.|+.+.+..+|.+++++.
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~ 33 (95)
T 1uel_A 6 KTLQQQTFKIDIDPEETVKALKEKIESE 33 (95)
T ss_dssp EETTCCEEEEECCTTSBHHHHHHHHHHH
T ss_pred EeCCCCEEEEEECCCCHHHHHHHHHHhh
Confidence 3446777789999999999999999986
No 63
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=52.00 E-value=16 Score=22.86 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=24.8
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..|++..|.|+.+.+..+|.+++.+..|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~g 70 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATG 70 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSS
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHC
Confidence 4788889999999999999999998765
No 64
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.85 E-value=23 Score=22.81 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHhhhC
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~G 83 (83)
+..|.|+.+.+..+|..++.+..|
T Consensus 43 ~~~l~v~~~~TV~~LK~~I~~~~g 66 (125)
T 1j8c_A 43 KEEFAVPENSSVQQFKEAISKRFK 66 (125)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHC
Confidence 345789999999999999998765
No 65
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=49.20 E-value=9.1 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred cCceeEEEEcCCCChHHHHHHHHh
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSK 80 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~ 80 (83)
|+..+.|.|+.+.++++|+..|.+
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~ 26 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTN 26 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHH
T ss_pred CCCcEEEEECCchhHHHHHHHHHh
Confidence 567888999999999999999976
No 66
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=48.40 E-value=9.1 Score=23.16 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=20.8
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
-.|.-| |.|+.+.+|.+|..|+.+.++
T Consensus 12 ~~G~~R-i~v~~~~t~~~L~~~I~~~~~ 38 (80)
T 2pjh_A 12 PDGVKR-ITATKRETAATFLKKVAKEFG 38 (80)
T ss_dssp SSEEEE-CCCCSSCCHHHHHHHHHHHTC
T ss_pred CCCCEE-EEcCCcChHHHHHHHHHHHcC
Confidence 346445 559999999999999988653
No 67
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=48.21 E-value=21 Score=21.87 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhhhC
Q 045565 62 IVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 62 IisV~R~isf~eL~~Kls~l~G 83 (83)
.|.|+.+.+..+|.+++.+..|
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~g 56 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFK 56 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHT
T ss_pred EEEECCCCcHHHHHHHHHHHHC
Confidence 5789999999999999998765
No 68
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=46.94 E-value=24 Score=21.80 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.1
Q ss_pred cCceeEEEEcC-CCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHR-SSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R-~isf~eL~~Kls~l~G 83 (83)
+|.+..+.|+. +.+..+|.+++.+..|
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~g 66 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQ 66 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTT
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHC
Confidence 46666789998 9999999999998765
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=46.45 E-value=58 Score=21.18 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.8
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+-..|+|..+.|+.+.+..+|.+++.+.+|
T Consensus 102 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~g 131 (172)
T 3u30_A 102 KTLTGKTITLEVEPSDTIENVKAKIQDKEG 131 (172)
T ss_dssp EESSCCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred ecccCcceeEEecCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999998765
No 70
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=44.25 E-value=26 Score=21.74 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=20.8
Q ss_pred cCceeEEEEc-CCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVH-RSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~-R~isf~eL~~Kls~l~G 83 (83)
.|..| |.|+ .+.++.+|.+|+.+.+|
T Consensus 16 ~G~~~-v~v~~~~~Tv~~LK~kI~~~~g 42 (107)
T 1wf9_A 16 DGLER-VSVDGPHITVSQLKTLIQDQLQ 42 (107)
T ss_dssp SCEEE-EEECCTTSBHHHHHHHHHHHSC
T ss_pred CCCEE-EEECCCCCcHHHHHHHHHHHhC
Confidence 35444 6799 99999999999998764
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=44.21 E-value=33 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.9
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+..+|.+..+.|+.+.+..+|.+++.+..|
T Consensus 8 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~g 37 (159)
T 3rt3_B 8 KMLAGNEFQVSLSSSMSVSELKAQITQKIG 37 (159)
T ss_dssp EETTSCEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred EECCCCEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 445788889999999999999999998765
No 72
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.07 E-value=30 Score=21.87 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 58 GDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 58 GeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
|++..|.|+.+-+..+|.+++.++.|
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tg 43 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQ 43 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHC
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHC
Confidence 56667889999999999999998765
No 73
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=42.43 E-value=30 Score=22.12 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.5
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+...|.+..+.|+.+.+..+|.+++.+..|
T Consensus 87 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 116 (159)
T 3rt3_B 87 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEG 116 (159)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHT
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 344788999999999999999999988764
No 74
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.69 E-value=23 Score=21.02 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=20.8
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhh
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKL 81 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l 81 (83)
.|.+..|.|+.+.+..+|.+++.+.
T Consensus 16 ~g~~~~~~v~~~~TV~~LK~~i~~~ 40 (95)
T 1wia_A 16 NDTEELAVARPEDTVGTLKSKYFPG 40 (95)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHSSS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHhh
Confidence 4566778999999999999998753
No 75
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=38.98 E-value=36 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.8
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+-..|.+..|.|+.+.+..+|.+++.+..|
T Consensus 6 k~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g 35 (169)
T 3l0w_B 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEG 35 (169)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 445788888999999999999999998765
No 76
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=36.30 E-value=15 Score=19.39 Aligned_cols=8 Identities=63% Similarity=1.178 Sum_probs=6.9
Q ss_pred CeEEecCc
Q 045565 52 QLRYVGGD 59 (83)
Q Consensus 52 ~LrYvGGe 59 (83)
.|.||||.
T Consensus 16 rlwyvggt 23 (26)
T 1gff_3 16 RLWYVGGT 23 (26)
T ss_pred EEEEecce
Confidence 59999995
No 77
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=35.47 E-value=27 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.7
Q ss_pred cCceeEEEEcCCC-----------ChHHHHHHHHhhh
Q 045565 57 GGDTRIVAVHRSS-----------TFSTLLTKLSKLA 82 (83)
Q Consensus 57 GGeTRIisV~R~i-----------sf~eL~~Kls~l~ 82 (83)
+.|.|=++++.+. +|.+|..|+.+++
T Consensus 34 ~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lF 70 (117)
T 2ktr_A 34 AREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLF 70 (117)
T ss_dssp EEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHC
T ss_pred CCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHc
Confidence 5799999998653 9999999999987
No 78
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.83 E-value=35 Score=20.50 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHhhhC
Q 045565 61 RIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 61 RIisV~R~isf~eL~~Kls~l~G 83 (83)
--+.|+.+.+..+|.+|+.+..|
T Consensus 21 ~~~~v~~~~TV~~lK~ki~~~~g 43 (95)
T 1v6e_A 21 SEKRYSRSLTIAEFKCKLELVVG 43 (95)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTC
T ss_pred EEEEcCccCHHHHHHHHHHHHHC
Confidence 34689999999999999999876
No 79
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.73 E-value=34 Score=21.06 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=22.2
Q ss_pred eEEecC---ceeEEEEcC---------CCChHHHHHHHHhhh
Q 045565 53 LRYVGG---DTRIVAVHR---------SSTFSTLLTKLSKLA 82 (83)
Q Consensus 53 LrYvGG---eTRIisV~R---------~isf~eL~~Kls~l~ 82 (83)
++..+| .+..|.|+. +.+..+|.+++.+..
T Consensus 17 Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~ 58 (107)
T 1x1m_A 17 VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKL 58 (107)
T ss_dssp EEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHC
T ss_pred EEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHh
Confidence 445566 677778554 599999999998875
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=34.10 E-value=40 Score=21.01 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHhhhC
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~G 83 (83)
+--+.|+.+.+..+|.+||.+..|
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~G 51 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCG 51 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHC
T ss_pred EEEEEeCCCChHHHHHHHHHHHHC
Confidence 345789999999999999998876
No 81
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=33.47 E-value=33 Score=23.38 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=15.1
Q ss_pred eEEec--CceeEEEEcCCCChHHHHHH
Q 045565 53 LRYVG--GDTRIVAVHRSSTFSTLLTK 77 (83)
Q Consensus 53 LrYvG--GeTRIisV~R~isf~eL~~K 77 (83)
|||+| |+||+|-..-+ |.+...|
T Consensus 3 LrFIacnGQTRaVq~~~~--y~~~L~~ 27 (110)
T 1k8r_B 3 LRFIACNGQTRAVQSRGD--YQKTLAI 27 (110)
T ss_dssp EEEECSTTCEEEEECCSC--HHHHHHH
T ss_pred eEEeecCCceEEeeehhh--HHHHHHH
Confidence 78886 99999876544 4444433
No 82
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=32.87 E-value=32 Score=20.87 Aligned_cols=21 Identities=5% Similarity=-0.056 Sum_probs=19.2
Q ss_pred EEEcCCCChHHHHHHHHhhhC
Q 045565 63 VAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 63 isV~R~isf~eL~~Kls~l~G 83 (83)
+.|+.+.+..+|.+|+.+.+|
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~G 39 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFA 39 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSC
T ss_pred EEcCccCcHHHHHHHHHHHHC
Confidence 678999999999999998876
No 83
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=31.98 E-value=9.7 Score=24.35 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=0.0
Q ss_pred EEecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 54 RYVGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 54 rYvGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+...|.|..|.|+.+.+..+|.+++.+..|
T Consensus 6 k~~~G~~~~l~v~~~~TV~~LK~~I~~~~g 35 (128)
T 3u5e_m 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEG 35 (128)
T ss_dssp ------------------------------
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 445788888999999999999999987654
No 84
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.54 E-value=54 Score=19.27 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.8
Q ss_pred eeEEEEcCCCChHHHHHHHHhhh
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLA 82 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~ 82 (83)
+--|.|+.+.+..+|.+++++..
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~ 43 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVY 43 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEecCCCCcHHHHHHHHHHHh
Confidence 44556779999999999999865
No 85
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=31.28 E-value=59 Score=20.05 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHhhhC
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~G 83 (83)
+--+.|+.+.+..+|.+|+.+..|
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~G 52 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTG 52 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHC
T ss_pred EEEEEeCccCHHHHHHHHHHHHHC
Confidence 445789999999999999999876
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=30.73 E-value=41 Score=21.36 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhC
Q 045565 61 RIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 61 RIisV~R~isf~eL~~Kls~l~G 83 (83)
--+.|+.+.+..+|.+||.+.+|
T Consensus 20 ~e~~v~~~~TV~~lK~ki~~~~G 42 (122)
T 1t0y_A 20 MEKKYPAGMSLNDLKKKLELVVG 42 (122)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhC
Confidence 34689999999999999999876
No 87
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.96 E-value=52 Score=21.06 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhh
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLA 82 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~ 82 (83)
.|++--|.|+.+.+..+|.+++.+..
T Consensus 16 ~g~~~~v~V~~~~TV~dLK~~I~~~~ 41 (105)
T 1v2y_A 16 DGEVMPVVVVQNATVLDLKKAIQRYV 41 (105)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHh
Confidence 57788899999999999999998754
No 88
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=28.81 E-value=15 Score=19.40 Aligned_cols=10 Identities=50% Similarity=0.950 Sum_probs=7.7
Q ss_pred CCeEEecCce
Q 045565 51 NQLRYVGGDT 60 (83)
Q Consensus 51 g~LrYvGGeT 60 (83)
-.|.||||..
T Consensus 14 arlwyvggtq 23 (26)
T 1m06_J 14 ARLWYVGGSQ 23 (26)
T ss_dssp SCCCCSSSCC
T ss_pred eEEEEEcceE
Confidence 3699999963
No 89
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=28.03 E-value=4.7 Score=23.99 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=10.6
Q ss_pred EEeecCCEeeeCCCCC
Q 045565 36 FMCSFGGKILPRPHDN 51 (83)
Q Consensus 36 llCSyGGrIlPRp~Dg 51 (83)
|++. -|+|+||--.|
T Consensus 13 Fis~-~GkIlprr~TG 27 (55)
T 3r8n_R 13 YITE-SGKIVPSRITG 27 (55)
T ss_dssp GBCT-TCCBCCHHHHC
T ss_pred HcCC-CCCCcCccccc
Confidence 5665 89999985433
No 90
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.96 E-value=69 Score=20.49 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 58 GDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 58 GeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
|.+..|.|+.+.+..+|.+++++..|
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~G 63 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTG 63 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 45566899999999999999998765
No 91
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.40 E-value=71 Score=21.47 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+|+.-.|.|+.+.+..+|..++++..+
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~ 51 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLG 51 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhC
Confidence 456667899999999999999998754
No 92
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=27.26 E-value=59 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=24.5
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+|++.-|.|+.+.+..+|.+++.++.|
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tg 39 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQ 39 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHC
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHC
Confidence 788888999999999999999998865
No 93
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.24 E-value=77 Score=20.23 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 58 GDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 58 GeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
|.+-.|.|+.+.+-.+|.+++++..|
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~g 54 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFG 54 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTT
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHC
Confidence 56678899999999999999998764
No 94
>3ibz_A Putative tellurium resistant like protein TERD; structural genomics, stress protein, tellurium resistance; 1.78A {Streptomyces coelicolor A3}
Probab=24.70 E-value=65 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=16.2
Q ss_pred eeCCCCCCeEEec--------CceeEEEE
Q 045565 45 LPRPHDNQLRYVG--------GDTRIVAV 65 (83)
Q Consensus 45 lPRp~Dg~LrYvG--------GeTRIisV 65 (83)
.|+.+||.++..| |+.-.|.|
T Consensus 65 ~~~s~~GsV~h~gDn~tG~g~GddE~i~v 93 (191)
T 3ibz_A 65 NLKSPDGSVEHTGDNITGEGEGDDEQIKI 93 (191)
T ss_dssp BCBCTTSSEEECCCCSSCCSSSCSEEEEE
T ss_pred CCCCCCCEEEecCCCCCCCCCCCceEEEE
Confidence 4899999999998 54455555
No 95
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=24.67 E-value=70 Score=21.78 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.3
Q ss_pred eeEEEEcCCCChHHHHHHHHhhhC
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~G 83 (83)
.|-|.|+-+++|.+|-.-|....|
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC
Confidence 499999999999999987766554
No 96
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=24.37 E-value=75 Score=24.03 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.0
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
..|.+..|.|+.+.+..+|.+++++..|
T Consensus 241 l~Gk~~~leV~~s~TV~dLK~kI~~~~G 268 (307)
T 3ai5_A 241 LTGKTITLEVEPSDTIENVKAKIQDKEG 268 (307)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 3577778999999999999999998765
No 97
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=23.83 E-value=1e+02 Score=17.52 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.4
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.|++-.+.|.++.+|..|+.+.++.-|
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~g 36 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQG 36 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhC
Confidence 467778899999999999999887543
No 98
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=23.69 E-value=16 Score=20.54 Aligned_cols=9 Identities=56% Similarity=1.081 Sum_probs=7.3
Q ss_pred CeEEecCce
Q 045565 52 QLRYVGGDT 60 (83)
Q Consensus 52 ~LrYvGGeT 60 (83)
.|.||||+.
T Consensus 28 rlwyvggqq 36 (37)
T 2bpa_3 28 RLWYVGGQQ 36 (37)
T ss_dssp CCCCSSSCC
T ss_pred eEEEecccc
Confidence 599999973
No 99
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=23.53 E-value=95 Score=22.50 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=19.9
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
+|+-+++.-..+.+.-++..|+++++|
T Consensus 140 ~~~~~~lg~t~dds~Gr~fD~vA~~LG 166 (330)
T 2ivn_A 140 GGRYRVFGETLDIGIGNAIDVFARELG 166 (330)
T ss_dssp TTEEEEEEEBSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEeecCchhHHHHHHHHHHhC
Confidence 445555544667789999999998886
No 100
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=23.39 E-value=40 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.1
Q ss_pred cCceeEEEEcCC---CChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRS---STFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~---isf~eL~~Kls~l~G 83 (83)
+|++-++.+... +++.||...+.+++|
T Consensus 253 ~g~i~~l~~g~~~~~~s~~ela~~l~~~~G 282 (399)
T 3nzo_A 253 NRDIFFPKLSEALHLISFADIAVKYLKQLG 282 (399)
T ss_dssp TTEEEEECCCTTCCCEEHHHHHHHHHHHTT
T ss_pred CCCEEEecCCCCCCcccHHHHHHHHHHHhC
Confidence 477777777766 999999999999876
No 101
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=21.93 E-value=1.2e+02 Score=19.43 Aligned_cols=26 Identities=12% Similarity=0.347 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 58 GDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 58 GeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
|.+..+.|.++..|..|+.+.++..|
T Consensus 40 g~~i~fkIk~tt~l~kL~~ay~ek~g 65 (106)
T 2eke_C 40 SSEIFFKIKKTTPLRRLMEAFAKRQG 65 (106)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHhC
Confidence 56677899999999999999877543
No 102
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.20 E-value=46 Score=19.76 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHHhh
Q 045565 67 RSSTFSTLLTKLSKL 81 (83)
Q Consensus 67 R~isf~eL~~Kls~l 81 (83)
++.||.||.++++.|
T Consensus 8 k~ls~eEL~~rl~~L 22 (51)
T 2jo8_A 8 KSWTVEDLQKRLLAL 22 (51)
T ss_dssp GGSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHc
Confidence 578999999999865
No 103
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=21.06 E-value=1.2e+02 Score=19.36 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=24.2
Q ss_pred ecCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 56 VGGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 56 vGGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
-+|.+.-|.|+.+-+-.+|.+++++-.|
T Consensus 29 ~~Gkk~~v~v~p~DTI~~LK~~I~~k~G 56 (93)
T 3plu_A 29 RLGKKVRVKCLGEDSVGDFKKVLSLQIG 56 (93)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhC
Confidence 3677888999999999999999998765
No 104
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=20.66 E-value=84 Score=20.72 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHhhhC
Q 045565 60 TRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 60 TRIisV~R~isf~eL~~Kls~l~G 83 (83)
.+.+.|.++.+|.+|...+++..|
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg 80 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMG 80 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHC
T ss_pred cceEEEeccCcHHHHHHHHHHHhC
Confidence 567899999999999999998765
No 105
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=20.61 E-value=1.3e+02 Score=18.40 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.0
Q ss_pred cCceeEEEEcCCCChHHHHHHHHhhhC
Q 045565 57 GGDTRIVAVHRSSTFSTLLTKLSKLAG 83 (83)
Q Consensus 57 GGeTRIisV~R~isf~eL~~Kls~l~G 83 (83)
.|++-.+.|.++.+|..|+.+.++.-|
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~g 42 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQG 42 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhC
Confidence 356667899999999999999887543
Done!