BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045566
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 51 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 66 YWDTRQPNPVHT 77
WD + + T
Sbjct: 150 IWDVKTGKCLKT 161
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 186
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 187 DGLCRIWDTASGQCLKT 203
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 66 YWDTR 70
WD +
Sbjct: 133 IWDVK 137
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 170 DGLCRIWDTASGQCLKT 186
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 33 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 93 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 66 YWDTRQPNPVHT 77
WD + + T
Sbjct: 132 IWDVKTGKCLKT 143
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 168
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 169 DGLCRIWDTASGQCLKT 185
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 66 YWDTR 70
WD +
Sbjct: 133 IWDVK 137
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 170 DGLCRIWDTASGQCLKT 186
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 30 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 90 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 66 YWDTR 70
WD +
Sbjct: 129 IWDVK 133
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 165
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 166 DGLCRIWDTASGQCLKT 182
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 66 YWDTRQPNPVHT 77
WD + + T
Sbjct: 136 IWDVKTGKCLKT 147
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 173 DGLCRIWDTASGQCLKT 189
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 35 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 95 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 66 YWDTR 70
WD +
Sbjct: 134 IWDVK 138
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 170
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 171 DGLCRIWDTASGQCLKT 187
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 40 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 66 YWDTR 70
WD +
Sbjct: 139 IWDVK 143
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 176 DGLCRIWDTASGQCLKT 192
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 66 YWDTRQPNPVHT 77
WD + + T
Sbjct: 136 IWDVKTGKCLKT 147
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 173 DGLCRIWDTASGQCLKT 189
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 39 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 99 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 66 YWDTR 70
WD +
Sbjct: 138 IWDVK 142
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 174
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 175 DGLCRIWDTASGQCLKT 191
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 66 YWDTR 70
WD +
Sbjct: 136 IWDVK 140
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 173 DGLCRIWDTASGQCLKT 189
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 40 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 66 YWDTR 70
WD +
Sbjct: 139 IWDVK 143
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 176 DGLCRIWDT 184
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 66 YWDTR 70
WD +
Sbjct: 136 IWDVK 140
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 173 DGLCRIWDTASGQCLKT 189
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 40 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 66 YWDTR 70
WD +
Sbjct: 139 IWDVK 143
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 176 DGLCRIWDT 184
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 66 YWDTR 70
WD +
Sbjct: 155 IWDVK 159
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 192 DGLCRIWDT 200
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 58 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 117
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 118 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 66 YWDTR 70
WD +
Sbjct: 157 IWDVK 161
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 193
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 194 DGLCRIWDT 202
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLAT--GSWDK 62
W+ DG + SGG D V++W S T H+A +K VAW P + NLLAT G+ DK
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284
Query: 63 TLKYWDTRQPNPVHT 77
+ +W+ V+T
Sbjct: 285 QIHFWNAATGARVNT 299
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 16 GGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
G D + +W S G + V + HD + A P+ +L+T + D+ LK+W
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 28 LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78
++ Q T+ H + + +AW + LA+G D ++ WD R P T+
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + + DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 37 NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 66 YWDTRQPNPVHT 77
WD + + T
Sbjct: 136 IWDVKTGKCLKT 147
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 61 DKTLKYWDTRQPNPVHT 77
D + WDT + T
Sbjct: 173 DGLCRIWDTASGQCLKT 189
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ G T SGGCDK+ +W + SG H++ + V + P + A+GS D T + +
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 68 DTR 70
D R
Sbjct: 268 DLR 270
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
G +F+G D + +W +L G + + H+ + + P+ +GSWD TL+ W
Sbjct: 296 GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL------SGGQPVTVAMHDAPIKEVAWIPEMNL 54
V+ + G + GG D + ++PL + +VAMH + ++
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 55 LATGSWDKTLKYWD 68
+ T S D T WD
Sbjct: 169 ILTASGDGTCALWD 182
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
VLC W D + S D +V +W + + V M + A+ P +A G
Sbjct: 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 61 D 61
D
Sbjct: 127 D 127
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM--NLLATGSWDKTLKYW 67
G + SG D +K+W ++G T+ H + W +M N++ +GS D+TLK W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 184
Query: 68 DTRQPNPVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
+ +HT RC L + +V G+ D L V++++ Q
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQ 230
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG D +++W + +G T+ H + + + N+L +G+ D T+K WD
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWD 345
Query: 69 TRQPNPVHTQQLPDR 83
+ + T Q P++
Sbjct: 346 IKTGQCLQTLQGPNK 360
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
V SG D +++W + +G + H A ++ V + + + +G++D +K WD
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE 269
Query: 73 NPVHT-QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109
+HT Q +R Y+L +V G+ D ++ V++++
Sbjct: 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307
Score = 33.9 bits (76), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG D VK+W + T+ H + + + + + +GS D +++ WD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305
Query: 69 TRQPNPVHT----QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
N +HT Q L + ++ ++V G AD + +++++ Q
Sbjct: 306 VETGNCIHTLTGHQSLTS---GMELKDNILVSGNADSTVKIWDIKTGQ 350
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D SG CD K+W + G T H++ I + + P N ATGS D T + +D
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Query: 69 TRQPNPVHT 77
R + T
Sbjct: 266 LRADQELMT 274
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
C + DD V S G D +W + +G Q T H + ++ P+ L +G+ D
Sbjct: 159 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 217
Query: 63 TLKYWDTRQ 71
+ K WD R+
Sbjct: 218 SAKLWDVRE 226
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ G + +G D +W L + +A HD + + + +ATGSWD L
Sbjct: 288 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 347
Query: 65 KYWD 68
K W+
Sbjct: 348 KIWN 351
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 92
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 118
Query: 93 ---LMVVGTADRNLVVFNLQ 109
+ G D ++NL+
Sbjct: 119 SGNYVACGGLDNICSIYNLK 138
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D SG CD K+W + G T H++ I + + P N ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69 TRQPNPVHT 77
R + T
Sbjct: 255 LRADQELMT 263
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
C + DD V S G D +W + +G Q T H + ++ P+ L +G+ D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 63 TLKYWDTRQ 71
+ K WD R+
Sbjct: 207 SAKLWDVRE 215
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ G + +G D +W L + +A HD + + + +ATGSWD L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 65 KYWD 68
K W+
Sbjct: 337 KIWN 340
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 92
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 93 ---LMVVGTADRNLVVFNLQ 109
+ G D ++NL+
Sbjct: 108 SGNYVACGGLDNICSIYNLK 127
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D SG CD K+W + G T H++ I + + P N ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69 TRQPNPVHT 77
R + T
Sbjct: 255 LRADQELMT 263
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
C + DD V S G D +W + +G Q T H + ++ P+ L +G+ D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 63 TLKYWDTRQ 71
+ K WD R+
Sbjct: 207 SAKLWDVRE 215
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ G + +G D +W L + +A HD + + + +ATGSWD L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 65 KYWD 68
K W+
Sbjct: 337 KIWN 340
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 92
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 93 ---LMVVGTADRNLVVFNLQ 109
+ G D ++NL+
Sbjct: 108 SGNYVACGGLDNICSIYNLK 127
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D SG CD K+W + G T H++ I + + P N ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69 TRQPNPVHT 77
R + T
Sbjct: 255 LRADQELMT 263
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
C + DD V S G D +W + +G Q T H + ++ P+ L +G+ D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 63 TLKYWDTRQ 71
+ K WD R+
Sbjct: 207 SAKLWDVRE 215
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ G + +G D +W L + +A HD + + + +ATGSWD L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 65 KYWD 68
K W+
Sbjct: 337 KIWN 340
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 92
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 93 ---LMVVGTADRNLVVFNLQ 109
+ G D ++NL+
Sbjct: 108 SGNYVACGGLDNICSIYNLK 127
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D SG CD K+W + G T H++ I + + P N ATGS D T + +D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 69 TRQPNPVHT 77
R + T
Sbjct: 255 LRADQELMT 263
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62
C + DD V S G D +W + +G Q T H + ++ P+ L +G+ D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 63 TLKYWDTRQ 71
+ K WD R+
Sbjct: 207 SAKLWDVRE 215
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ G + +G D +W L + +A HD + + + +ATGSWD L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 65 KYWD 68
K W+
Sbjct: 337 KIWN 340
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 92
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 93 ---LMVVGTADRNLVVFNLQ 109
+ G D ++NL+
Sbjct: 108 SGNYVACGGLDNICSIYNLK 127
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG SG D +++W L +G H + VA+ + + +GS DKT+K W+
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 69 TRQPNPVHTQQLPDRCYALTVRY------PLMVVGTADRNLVVFNLQN 110
T Q + VR+ P++V D+ + V+NL N
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 13 VFSGGCDKQVKMWPLLS-----GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + MW L G + H + +V + +GSWD TL+ W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 68 D-----TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107
D T + HT+ + ++ R +V G+ D+ + ++N
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWN 133
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ S G DK VK+W L + H + V P+ +L A+G D WD +
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 224
Query: 73 NPVHTQQLPDRCYAL 87
++T D AL
Sbjct: 225 KHLYTLDGGDIINAL 239
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSG 30
W DG T+F+G D V++W + G
Sbjct: 291 WSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG SG D +++W L +G H + VA+ + + +GS DKT+K W+
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 69 TRQPNPVHTQQLPDRCYALTVRY------PLMVVGTADRNLVVFNLQN 110
T Q + VR+ P++V D+ + V+NL N
Sbjct: 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 13 VFSGGCDKQVKMWPLLS-----GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + MW L G + H + +V + +GSWD TL+ W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 68 D-----TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107
D T + HT+ + ++ R +V G+ D+ + ++N
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWN 156
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ S G DK VK+W L + H + V P+ +L A+G D WD +
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247
Query: 73 NPVHTQQLPDRCYAL 87
++T D AL
Sbjct: 248 KHLYTLDGGDIINAL 262
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSG 30
W DG T+F+G D V++W + G
Sbjct: 314 WSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-EMNLLAT--G 58
W DG + SGG D V +WP G P+ T H +K VAW P + N+LAT G
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 59 SWDKTLKYWD 68
+ D+ ++ W+
Sbjct: 309 TSDRHIRIWN 318
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 13 VFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70
V + D V +W SG Q + + I VAWI E N LA G+ ++ WD +
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 71 Q 71
Q
Sbjct: 189 Q 189
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-EMNLLAT--G 58
W DG + SGG D V +WP G P+ T H +K VAW P + N+LAT G
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 59 SWDKTLKYWD 68
+ D+ ++ W+
Sbjct: 298 TSDRHIRIWN 307
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 13 VFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70
V + D V +W SG Q + + I VAWI E N LA G+ ++ WD +
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 71 Q 71
Q
Sbjct: 178 Q 178
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G + S D Q+K+W + G P T+ H A + ++A I + + S D T++ W+
Sbjct: 148 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 207
Query: 70 RQPNPVHT 77
+HT
Sbjct: 208 GTGTTIHT 215
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G + S D Q+K+W + G P T+ H A + ++A I + + S D T++ W+
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 70 RQPNPVHT 77
+HT
Sbjct: 211 GTGTTIHT 218
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W
Sbjct: 68 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 68 D 68
+
Sbjct: 126 N 126
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W
Sbjct: 191 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 68 D 68
+
Sbjct: 249 N 249
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W
Sbjct: 355 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 68 D 68
+
Sbjct: 413 N 413
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W
Sbjct: 478 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 68 D 68
+
Sbjct: 536 N 536
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 68 D 68
+
Sbjct: 290 N 290
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W
Sbjct: 273 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 68 DTRQPNPVHTQQLPDRCYAL 87
+ N H Q L ++
Sbjct: 331 N---RNGQHLQTLTGHSSSV 347
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG T+ S DK VK+W +G T+ H + + VA+ P+ +A+ S DKT+K W+
Sbjct: 314 DGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W
Sbjct: 519 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Query: 68 D 68
+
Sbjct: 577 N 577
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W
Sbjct: 27 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84
Query: 68 D 68
+
Sbjct: 85 N 85
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W
Sbjct: 109 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Query: 68 D 68
+
Sbjct: 167 N 167
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W
Sbjct: 150 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Query: 68 D 68
+
Sbjct: 208 N 208
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
D T+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W
Sbjct: 437 DDQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Query: 68 D 68
+
Sbjct: 495 N 495
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG T+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W
Sbjct: 396 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Query: 68 D 68
+
Sbjct: 454 N 454
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
H + ++ VA+ P+ +A+ S DKT+K W+
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-EMNLLAT--G 58
W DG + SGG D V +WP G P+ T H +K VAW P + N+LAT G
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 59 SWDKTLKYWD 68
+ D+ ++ W+
Sbjct: 218 TSDRHIRIWN 227
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 12 TVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
V + D V +W SG Q + + I VAWI E N LA G+ ++ WD
Sbjct: 37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 70 RQ 71
+Q
Sbjct: 97 QQ 98
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG 58
W+ + G D+ +++W + SG V H + + + W P L +G
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 258
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DD T+ S G DK VK W L H++ I + P+ L+A+ D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68 DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
+ ++T D ++L RY L + VF+L +PQ
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 68 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 109
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSG 30
W DG T+F+G D +++W +++
Sbjct: 294 WSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DD T+ S G DK VK W L H++ I + P+ L+A+ D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68 DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
+ ++T D ++L RY L + VF+L +PQ
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 68 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 109
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSG 30
W DG T+F+G D +++W +++
Sbjct: 294 WSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DD T+ S G DK VK W L H++ I + P+ L+A+ D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68 DTRQPNPVHTQQLPDRCYAL 87
+ ++T D ++L
Sbjct: 224 NLAAKKAMYTLSAQDEVFSL 243
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 68 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 109
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSG 30
W DG T+F+G D +++W +++
Sbjct: 294 WSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DD T+ S G DK VK W L H++ I + P+ L+A+ D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 68 DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
+ ++T D ++L RY L + VF+L +PQ
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 68 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 109
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
+L + DG + SG D + ++ + +G T+ H PI+ + + P+ LL T S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 61 DKTLKYWDTRQPN 73
D +K +D + N
Sbjct: 227 DGYIKIYDVQHAN 239
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--- 77
+V ++ + SG + ++ I +A+ P+ LA+G+ D + +D +HT
Sbjct: 145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204
Query: 78 QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
+P R + L+V + D + ++++Q+
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATG 58
VLC + D + + + DK+VK+W +G T H + + + N LLATG
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 719
Query: 59 SWDKTLKYWDTRQ 71
S D LK WD Q
Sbjct: 720 SNDFFLKLWDLNQ 732
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 63
+ + DG + S G DK ++++ +G + + + H+ + A+ + + +AT S DK
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 64 LKYWDTRQPNPVHT 77
+K WD+ VHT
Sbjct: 681 VKIWDSATGKLVHT 694
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
+W DGT VK+W +++G H + A + ++ S DKT
Sbjct: 1060 SWSFDGT----------VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1109
Query: 65 KYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
K W +P+H + + RC A ++ L+ G + + ++N+ + Q
Sbjct: 1110 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
T K + + +G D +K+W L T+ H + + P+ LLA+ S D TL
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 65 KYWDTRQPN 73
+ WD R N
Sbjct: 768 RLWDVRSAN 776
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMW-----PLLSGGQPVTV----AMHDAPIKEVAWIPE 51
V CS + DG + +G + ++++W LL P++V A H + +V + P+
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1189
Query: 52 -MNLLATGSWDKTLKYWD 68
L++ G + LK+W+
Sbjct: 1190 SKTLVSAGGY---LKWWN 1204
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATG 58
VLC + D + + + DK+VK+W +G T H + + + N LLATG
Sbjct: 667 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 726
Query: 59 SWDKTLKYWDTRQ 71
S D LK WD Q
Sbjct: 727 SNDFFLKLWDLNQ 739
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 63
+ + DG + S G DK ++++ +G + + + H+ + A+ + + +AT S DK
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 64 LKYWDTRQPNPVHT 77
+K WD+ VHT
Sbjct: 688 VKIWDSATGKLVHT 701
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
+W DGT VK+W +++G H + A + ++ S DKT
Sbjct: 1067 SWSFDGT----------VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1116
Query: 65 KYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
K W +P+H + + RC A ++ L+ G + + ++N+ + Q
Sbjct: 1117 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
T K + + +G D +K+W L T+ H + + P+ LLA+ S D TL
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 65 KYWDTRQPN 73
+ WD R N
Sbjct: 775 RLWDVRSAN 783
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMW-----PLLSGGQPVTV----AMHDAPIKEVAWIPE 51
V CS + DG + +G + ++++W LL P++V A H + +V + P+
Sbjct: 1137 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1196
Query: 52 -MNLLATGSWDKTLKYWD 68
L++ G + LK+W+
Sbjct: 1197 SKTLVSAGGY---LKWWN 1211
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DD T+ S G DK VK W L H++ I + P+ L+A+ D + W
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 68 DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
+ ++T D ++L RY L + VF+L +PQ
Sbjct: 218 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 262
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 70 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 68 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 109
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 87 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSG 30
W DG T+F+G D +++W +++
Sbjct: 288 WSADGQTLFAGYTDNVIRVWQVMTA 312
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DD T+ S G DK VK W L H++ I + P+ L+A+ D + W
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 68 DTRQPNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 112
+ +T D ++L RY L + VF+L +PQ
Sbjct: 224 NLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG S DK +++W + +G H + + V + + + +GS DKT+K W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 68 D 68
D
Sbjct: 93 D 93
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWD 68
G + SG D+ V++W L +G +T+++ D + VA P + +A GS D+ ++ WD
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 69 TR---------QPNPVHTQQLPDRCYAL--TVRYPLMVVGTADRNLVVFNLQN 110
+ N T D Y++ T +V G+ DR++ ++NLQN
Sbjct: 236 SETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 9 DGTTVFSGGCDKQVKMWPLL------------SGGQPVTVAMHDAPIKEVAWIPEMNLLA 56
DG +V SG D+ VK+W L SG VT H + VA +
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 57 TGSWDKTLKYWDTRQPNPV 75
+GS D+ + +WD + NP+
Sbjct: 327 SGSKDRGVLFWDKKSGNPL 345
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + +G D+ +++W + + + + H+ I + + P + L +GS D+T++ WD
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 69 TR 70
R
Sbjct: 194 LR 195
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 24/134 (17%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-------------QPVTVAMHDAP----- 42
V C + +DG + GC+K +++ + G P + +P
Sbjct: 67 VCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 43 IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP---LMVVGT 98
I+ V + P+ LATG+ D+ ++ WD V Q ++ Y+L +P +V G+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGS 184
Query: 99 ADRNLVVFNLQNPQ 112
DR + +++L+ Q
Sbjct: 185 GDRTVRIWDLRTGQ 198
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI------PEMNLLATGSWDKTLKY 66
+ SG D+ V W SG + + H + VA PE N+ ATGS D +
Sbjct: 325 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384
Query: 67 WDTRQPNP 74
W ++ P
Sbjct: 385 WKYKKIAP 392
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSG-------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWD 61
DG + +G D+ V++W +G + + H + V + + + +GS D
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 62 KTLKYWDTRQPNPVHTQQLPD 82
+++K W+ + N + P+
Sbjct: 278 RSVKLWNLQNANNKSDSKTPN 298
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWIPEMNLLATGSWD 61
W GT + S G D+++++W + V H +++VAW P N LA+ S+D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 62 KTLKYWDTRQPN 73
T W Q +
Sbjct: 83 ATTCIWKKNQDD 94
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 34 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73
T+ H+ +K VAW P NLLAT S DK++ W+ + +
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---HDAPIKEVAWIPEMNLLATGSWD 61
W G + + DK V +W + + V++ H +K V W P LLA+ S+D
Sbjct: 112 AWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 62 KTLKYWDTRQPN 73
T+K + + +
Sbjct: 172 DTVKLYREEEDD 183
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKY 66
DGT SGG D VK+W L + H + + VA P + L+ G D +
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE-DGRILL 208
Query: 67 WDTRQPNP 74
WDTR+P P
Sbjct: 209 WDTRKPKP 216
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G + SG DK +KMW + +G +T+ HD ++ V + + + + DKTL+ WD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 70 RQPNPVHTQQLPDRCYALTVRY----PLMVVGTADRNLVVF 106
+ + T + + ++ + P +V G+ D+ + V+
Sbjct: 368 KNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 32.0 bits (71), Expect = 0.091, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--------------- 53
DGT + S D+ V++W + + + H ++ ++W PE +
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304
Query: 54 -----LLATGSWDKTLKYWD 68
L +GS DKT+K WD
Sbjct: 305 GKPGPFLLSGSRDKTIKMWD 324
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+ + S D +K+W +G T+ H ++++++ LLA+ S D T+K WD
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ G + S D +K+W T+ HD + V+ +P + + + S DKT+
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 65 KYWDTR 70
K W+ +
Sbjct: 217 KMWEVQ 222
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
+G + S DK +KMW + +G T H ++ V + L+A+ S D+T++ W
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
H +P+ V + P +++ + S D T+K WD
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G + S DK +++W + T+ H+ + + + + TGS D+T+K W+
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Query: 70 R 70
R
Sbjct: 410 R 410
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMNLLATGSW 60
W +DG + + DK V +W G+ + H +K V W P LLA+ S+
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 61 DKTLKYW 67
D T++ W
Sbjct: 174 DDTVRIW 180
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
H I+ VAW P +LLA GS+D T+ W +
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES 90
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQP-------VTVAMHDAPIKEVAWIPEMNLLAT 57
W+ + + +G D V +W + H+ +K VAW + LAT
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 58 GSWDKTLKYWDTRQPNP 74
S DK++ W+T +
Sbjct: 125 CSRDKSVWIWETDESGE 141
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 63
+ + +DG + S G DK ++++ +G + + + H+ + A+ + +AT S DK
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 64 LKYWDTRQPNPVHT-----QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
+K W++ VHT +Q+ + + + L+ G++D L +++L +
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATG 58
VLC + D + + DK+VK+W ++G T H + + + LLATG
Sbjct: 666 VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATG 725
Query: 59 SWDKTLKYWDTRQ 71
S D LK WD Q
Sbjct: 726 SSDCFLKLWDLNQ 738
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
+W DGT VK+W +++G + H + + ++ S DKT
Sbjct: 1066 SWSFDGT----------VKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTA 1115
Query: 65 KYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQN 110
K W P+H + + RC A +V L+ G + + ++N+ N
Sbjct: 1116 KIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Score = 32.3 bits (72), Expect = 0.072, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 15 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73
+G D +K+W L T+ H + + P+ LLA+ S D TLK WD N
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG SG D ++++W L +G H + VA+ + + + S D+T+K W+
Sbjct: 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Query: 69 TRQPNPVHTQQLPD--RCYALTVRY------PLMVVGTADRNLVVFNLQN 110
T + + R + VR+ P +V + D+ + V+NL N
Sbjct: 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71
T+ S DK VK+W L + T+A H + VA P+ +L A+G D + WD +
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Query: 72 PNPVHTQQLPDRCYAL 87
+++ + +AL
Sbjct: 593 GKKLYSLEANSVIHAL 608
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDK 62
D+ + S DK + +W L + VA H +++V + +GSWD
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452
Query: 63 TLKYWDTRQPNPV-----HTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107
L+ WD HT+ + ++L R +V + DR + ++N
Sbjct: 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ--IVSASRDRTIKLWN 500
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 1 VLCST--WKDDGTTVFSGGCDKQVKMW 25
+ C++ W DG+T+FSG D +++W
Sbjct: 663 IYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLA 56
V+C + + F+ GC D+ VK+W L T+ + + V + +P+ +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 57 TGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFN 107
T S D T+K WD + + V T + + V + P+++ G+ D L ++N
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
D +K+W + T+ H + + + P + ++ +GS D TLK W++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 8 DDGTTVFSGGCDKQVKMWPLLSGGQP-------VTVAMHDAPIKEVAWIPEMNLLATGSW 60
+D + SG DK V +W L Q + H+ + ++A E + SW
Sbjct: 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96
Query: 61 DKTLKYWDTR 70
DKTL+ WD R
Sbjct: 97 DKTLRLWDLR 106
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + +GG DK++ +W +L+ P + I ++A+ P++ +A G+ D+ +K ++
Sbjct: 224 NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFN 282
Query: 69 --TRQPNPVHT 77
T+ PV T
Sbjct: 283 LMTQSKAPVCT 293
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEMN----------LLA 56
D + S G ++++K+W +L + + H + V + P M A
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 57 TGSWDKTLKYWDT----RQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
+ WD LK W+T R H + + +Y + G D+ L+++++ N
Sbjct: 189 SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKY--IATGGKDKKLLIWDILN 244
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLA 56
V+C + + F+ GC D+ VK+W L T+ + + V + +P+ +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 57 TGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFN 107
T S D T+K WD + + V T + + V + P+++ G+ D L ++N
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
D +K+W + T+ H + + + P + ++ +GS D TLK W++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVA-------------MHDAPIKEVAWIP-EMNL 54
+G + SGG D + ++ L + + +H ++ V W P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 55 LATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA-----LTVRYPLMVVGT 98
+ S+DKTLK WDT + Y+ ++ ++ L+ VGT
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT 163
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPN 73
+V++ L SG + H I V+W P + +LAT S D +K WD R+ +
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLA 56
V+C + + F+ GC D+ VK+W L T+ + + V + +P+ +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 57 TGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFN 107
T S D T+K WD + + V T + + V + P+++ G+ D L ++N
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
D +K+W + T+ H + + + P + ++ +GS D TLK W++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+ G D +++++ +G + V H I+ +A P + +GS D T+K W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLA 56
V+C + + F+ GC D+ VK+W L T+ + + V + +P+ +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 57 TGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFN 107
T S D T+K WD + + V T + + V + P+++ G+ D L ++N
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
D +K+W + T+ H + + + P + ++ +GS D TLK W++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+ G D +++++ +G + V H I+ +A P + +GS D T+K W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
V++GG VK+W + G V+ D I+ +P+ L G TL W
Sbjct: 66 VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 68 DTRQPNPVHTQQLPDR---CYALTVRYPLMVVGT--ADRNLVVFNLQN 110
D P P +L CYAL + V + +D N+ V++L N
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIPEMNLLATGSW 60
C +DGT +++GG D V+ W L G Q + HD + I + + P LA G
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ---LQQHDFTSQIFSLGYCPTGEWLAVGME 244
Query: 61 DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLM---VVGTADRNLV 104
++ +P+ + L + C L++++ V T NL+
Sbjct: 245 SSNVEVLHVNKPDK-YQLHLHESC-VLSLKFAYCGKWFVSTGKDNLL 289
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 23/83 (27%)
Query: 15 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPN 73
+G DK V PL+ G H AP+ ++AW P N++A+GS D T+ W
Sbjct: 67 TGRVDKNV---PLVXG--------HTAPVLDIAWXPHNDNVIASGSEDCTVMVW------ 109
Query: 74 PVHTQQLPDRCYALTVRYPLMVV 96
++PD L +R P++ +
Sbjct: 110 -----EIPDGGLVLPLREPVITL 127
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 23/83 (27%)
Query: 15 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPN 73
+G DK V PL+ G H AP+ ++AW P N++A+GS D T+ W
Sbjct: 67 TGRVDKNV---PLVCG--------HTAPVLDIAWCPHNDNVIASGSEDCTVMVW------ 109
Query: 74 PVHTQQLPDRCYALTVRYPLMVV 96
++PD L +R P++ +
Sbjct: 110 -----EIPDGGLVLPLREPVITL 127
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70
+ S GCD + +W + +G +T+ +H I V W + L+ T DK ++ + R
Sbjct: 147 LLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Query: 71 QPNPVHTQQLP 81
+ V + P
Sbjct: 207 KGTVVAEKDRP 217
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.7 bits (73), Expect = 0.046, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPL-LSGGQPVTV--AMHDAPIKEVAWIPEMNLLAT 57
V C +W D + +G D V +W + P+ + A + + V W+ E +++
Sbjct: 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 598
Query: 58 GSWDKTLKYWD 68
G D +K+W+
Sbjct: 599 GQ-DSNIKFWN 608
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73
H A + V+W P+ LATGS D ++ W+ +P+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 5 TWKDDGTTVFSGGCDKQVKMW 25
TW DGT + S DK +K+W
Sbjct: 246 TWSPDGTKIASASADKTIKIW 266
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVA---------WIPEMNLLA 56
+ DG+ S G D + ++ + G + T D +K VA W P+ +A
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
Query: 57 TGSWDKTLKYWD 68
+ S DKT+K W+
Sbjct: 256 SASADKTIKIWN 267
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D + SGG D VK+W L +G + H + V P+ +L A+ D + WD
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 69 TRQPNPVHTQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
+ + + C++ RY + ++ + +F+L+N
Sbjct: 225 LTKGEALSEMAAGAPINQICFSPN-RY--WMCAATEKGIRIFDLEN 267
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVTVAMHDAPIKEVAWIPEMN--LLAT 57
VL + D + SGG D +++W + ++ H + V + P ++ ++ +
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 58 GSWDKTLKYWD 68
G WD +K WD
Sbjct: 172 GGWDNLVKVWD 182
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYP----LM 94
H A + +VA N + SWD +L+ W+ Q + L L+V + +
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNL-QNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 95 VVGTADRNLVVFNLQ 109
V G D L V+N++
Sbjct: 125 VSGGRDNALRVWNVK 139
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 15 SGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMNL---LATGSWDKTLKYW 67
+GG D VK+W S Q T+ H +++VAW P + L LA+ S D+T W
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 15 SGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNL 54
SGGCD +K+W GQ + H +++VAW P + L
Sbjct: 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL 226
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 15 SGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMNL---LATGSWDKTLKYW 67
+GG D VK+W S Q T+ H +++VAW P + L LA+ S D+T W
Sbjct: 177 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW 48
V C W DG ++ +G + ++++W +G + H API V W
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW 157
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
+ C ++D+ V +G DK ++++ ++ + ++ HD + + + +L +GS
Sbjct: 125 ITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 61 DKTLKYWDTRQPNPVHTQQLPD---RCYAL----TVRYPLMVVGTADRNLVVFNL 108
D+T++ WD ++ H + + RC + ++Y +V G+ D L V+ L
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY--IVTGSRDNTLHVWKL 234
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 53 NLLATGSWDKTLKYWDTRQ 71
N++ +GS+D TL WD Q
Sbjct: 281 NIVVSGSYDNTLIVWDVAQ 299
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
+ C ++D+ V +G DK ++++ ++ + ++ HD + + + +L +GS
Sbjct: 125 ITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 61 DKTLKYWDTRQPNPVHTQQLPD---RCYAL----TVRYPLMVVGTADRNLVVFNL 108
D+T++ WD ++ H + + RC + ++Y +V G+ D L V+ L
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY--IVTGSRDNTLHVWKL 234
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71
H A ++ V+ N++ +GS+D TL WD Q
Sbjct: 269 HXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQ 299
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWD 68
GT SG D +K+W L + H A + VA P + + + S D + WD
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 69 TRQPNPV 75
TR P P
Sbjct: 199 TRCPKPA 205
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
+ +G +FS D +W L+G + T+ H I + TGS D ++K
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 66 YWDTRQPNPVHTQQLP 81
WD V T + P
Sbjct: 100 LWDVSNGQCVATWKSP 115
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D + SG D +K+W + + H + + + + ++ TGS D T++ WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 69 TRQPNPVHTQQLPDRCYA-LTVRYP--LMVVGTADRNLVVFNLQNP 111
++T L C A L +R+ +MV + DR++ V+++ +P
Sbjct: 200 VNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNL----LATGSWDKTLKYWDTRQPNP 74
D+ + +W + S P + + + A + ++ + + S D+T+K W+T
Sbjct: 232 DRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 288
Query: 75 VHTQQLPDRCYA-LTVRYPLMVVGTADRNLVVFNLQ 109
V T R A L R L+V G++D + +++++
Sbjct: 289 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVT-VAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTR 70
V +GG D + +W + G PV+ + H+A + EV + P L T S D +L +WD
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Query: 71 QPNP 74
P
Sbjct: 312 TDVP 315
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 21 QVKMWPLLSGG----QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ 71
Q+K+W G Q +++ P+ V P + +++ATG D L WD RQ
Sbjct: 213 QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 28 LSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA 86
+ G + + MH + VA P + LAT S D+T+K WD RQ + Y+
Sbjct: 239 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYS 293
Query: 87 LTVRYPL 93
L R+P+
Sbjct: 294 LPHRHPV 300
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 28 LSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA 86
+ G + + MH + VA P + LAT S D+T+K WD RQ + Y+
Sbjct: 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYS 292
Query: 87 LTVRYPL 93
L R+P+
Sbjct: 293 LPHRHPV 299
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAM----HDAPIKEVAWIPEMNLLATGSWDKTLK 65
G +F+G + +W L + + H+ I + + + L TGSWDK LK
Sbjct: 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369
Query: 66 YW 67
W
Sbjct: 370 IW 371
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-------NLL 55
C D T + +G D+ +W + +G Q +++ + P A + + N+
Sbjct: 163 CQYVPDQETRLITGSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 56 ATGSWDKTLKYWDTR 70
+GS D T++ WD R
Sbjct: 222 ISGSCDTTVRLWDLR 236
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80
T+ H + + W PE N + + S D L W+ H +L
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL 106
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 28 LSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA 86
+ G + + MH + VA P + LAT S D+T+K WD RQ + Y+
Sbjct: 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYS 292
Query: 87 LTVRYPL 93
L R+P+
Sbjct: 293 LPHRHPV 299
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 15 SGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNL---LATGSWDKTLKYW 67
+GG D VK+W S Q T+ H +++VAW P + L LA+ S D+T W
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 35 TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
TV H A + +++ P +LATGS DKT+ WD R
Sbjct: 276 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 35 TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
TV H A + +++ P +LATGS DKT+ WD R
Sbjct: 274 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSW 60
+CS DG V SG DK K+W G + H+A + + + N T S
Sbjct: 107 VCSLSFQDGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163
Query: 61 DKTLKYW 67
DKT+K W
Sbjct: 164 DKTIKLW 170
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 16 GGCDKQVKMWPLL--SGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
GG D + PL SG P+ T+ H + +++ + ++ +GSWDKT K W
Sbjct: 77 GGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW 129
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.5 bits (62), Expect = 0.86, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 35 TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
TV H A + +++ P +LATGS DKT+ WD R
Sbjct: 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 15 SGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNL---LATGSWDKTLKYW 67
+GG D VK+W S Q T+ H +++VAW P + L +A+ S D+T W
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-PEMN-LLATGSWDKTLKYWD 68
DK W L + HD+ I + W PE ++A+ S+DKT+K W+
Sbjct: 39 DKDTSNWELSDSWRA-----HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-PEMN-LLATGSWDKTLKYWD 68
DK W L + HD+ I + W PE ++A+ S+DKT+K W+
Sbjct: 41 DKDTSNWELSDSWRA-----HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-PEMN-LLATGSWDKTLKYWD 68
DK W L + HD+ I + W PE ++A+ S+DKT+K W+
Sbjct: 41 DKDTSNWELSDSWRA-----HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 19 DKQVKMWPLLSG--GQPV-TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
D+++ +W S +P +V H A + +++ P +LATGS DKT+ WD R
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH--DAPIKE 45
V+ ++ D G T+ S G D +++ W + + + T+ MH D I+E
Sbjct: 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 340
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH--DAPIKE 45
V+ ++ D G T+ S G D +++ W + + + T+ MH D I+E
Sbjct: 304 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 350
>pdb|1DFX|A Chain A, Desulfoferrodoxin From Desulfovibrio Desulfuricans, Atcc
27774
Length = 125
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKTLKYW 67
+G+T G +K V + + GG + V P++E WI + LLA G S+ K LK
Sbjct: 38 EGST--DGAMEKHVPVIEKVDGGYLIKVGSVPHPMEEKHWIEWIELLADGRSYTKFLKPG 95
Query: 68 DT 69
D
Sbjct: 96 DA 97
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 72 PNPVHTQQLPDRCY 85
PN H QQ+ DRCY
Sbjct: 1193 PNNAHIQQVGDRCY 1206
>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
Length = 449
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 72 PNPVHTQQLPDRCY 85
PN H QQ+ DRCY
Sbjct: 120 PNNAHIQQVGDRCY 133
>pdb|3LVG|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVH|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 624
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 72 PNPVHTQQLPDRCY 85
PN H QQ+ DRCY
Sbjct: 142 PNNAHIQQVGDRCY 155
>pdb|3PNM|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
Length = 357
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 54 LLATGSWDKTLKYWDTRQPNPVHTQQ 79
LL GS+ +TL++WD +Q + QQ
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQ 268
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 54 LLATGSWDKTLKYWDTRQPNPVHTQQ 79
LL GS+ +TL++WD +Q + QQ
Sbjct: 252 LLVNGSYHRTLRFWDYQQGSWQEEQQ 277
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 54 LLATGSWDKTLKYWDTRQPNPVHTQQ 79
LL GS+ +TL++WD +Q + QQ
Sbjct: 252 LLVNGSYHRTLRFWDYQQGSWQEEQQ 277
>pdb|3PNO|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNQ|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
Length = 357
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 54 LLATGSWDKTLKYWDTRQPNPVHTQQ 79
LL GS+ +TL++WD +Q + QQ
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQ 268
>pdb|3PNK|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNK|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNL|A Chain A, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 357
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 54 LLATGSWDKTLKYWDTRQPNPVHTQQ 79
LL GS+ +TL++WD +Q + QQ
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQ 268
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 15 SGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNL---LATGSWDKTLKYW 67
+GG D VK+W S Q T+ H +++VAW P + L A+ S D+T W
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW 234
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 36 VAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
V H A + +++ P +LATGS DKT+ WD R
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 36 VAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
V H A + +++ P +LATGS DKT+ WD R
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 38 MHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
+H A + + P + L+AT S D T+K WD R
Sbjct: 201 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 38 MHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 70
+H A + + P + L+AT S D T+K WD R
Sbjct: 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,813,119
Number of Sequences: 62578
Number of extensions: 146790
Number of successful extensions: 690
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 339
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)