BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045566
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670
PE=2 SV=2
Length = 349
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 104/112 (92%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
VLCS WKDDGTTVFSGGCDKQ KMWPLLSGGQPVTVAMH+ PI +AWIP MNLLATGSW
Sbjct: 75 VLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSW 134
Query: 61 DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
DKTLKYWDTRQ NPVHTQQLPD+CY L+V++PLMVVGTADRNL+VFNLQNPQ
Sbjct: 135 DKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQ 186
>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1
Length = 368
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAPIK V W+ P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QSIQIAQHDAPIKTVHWVKAPNYSCIMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDK+LK+WDTR PNP+ T QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKSLKFWDTRSPNPLLTLQLPERCYCADVVYPMAVVATAERGLIVYQLEN 199
>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1
Length = 368
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199
>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1
Length = 368
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199
>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1
Length = 368
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K V WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTVHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199
>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1
Length = 368
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199
>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1
Length = 368
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199
>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1
Length = 368
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199
>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2
Length = 368
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A H+ PI+ + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHEGPIRTIHWIKAPNYSCIMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR PNP+ + Q+P+RCY V YP+ VV TA+R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLEN 199
>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1
Length = 368
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATG 58
VL W DDG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 59 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
SWDKTLK+WDTR NP+ QLP+R Y V YP+ VV TA R L+V+ L+N
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQLPERYYCADVIYPMAVVATAGRGLIVYQLEN 199
>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GLE2 PE=1 SV=1
Length = 365
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 5/115 (4%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI----PEMNLLA 56
VLC+ W +DGT V SGGCD +K++ + SG Q + MH APIK + ++ +
Sbjct: 83 VLCTRWSNDGTKVASGGCDNALKLYDIASG-QTQQIGMHSAPIKVLRFVQCGPSNTECIV 141
Query: 57 TGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111
TGSWDKT+KYWD RQP PV T +P+R Y++ + L+VV TA+R++ + NL NP
Sbjct: 142 TGSWDKTIKYWDMRQPQPVSTVMMPERVYSMDNKQSLLVVATAERHIAIINLANP 196
>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rae1 PE=1 SV=1
Length = 352
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN---LLAT 57
VL W DGT V SG DK K++ + +G Q VA HD ++ V ++ M +LAT
Sbjct: 77 VLSVNWSRDGTKVASGSVDKSAKVFDIQTG-QNQQVAAHDDAVRCVRFVEAMGTSPILAT 135
Query: 58 GSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111
GSWDKTLKYWD RQ P+ T LP+R YA+ +PL+ V TA+RN+ V NL P
Sbjct: 136 GSWDKTLKYWDLRQSTPIATVSLPERVYAMDCVHPLLTVATAERNICVINLSEP 189
>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1
Length = 330
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D T +SGG D Q+KM L + G V V HDAPI+ V + PE+N++ TGSWD+T+K WD
Sbjct: 72 DPTHAWSGGLDHQLKMHDLNTDGDTV-VGSHDAPIRCVEYCPEVNVIVTGSWDQTVKLWD 130
Query: 69 TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
R P T PD+ Y L+V ++VGTA R ++V++L+N
Sbjct: 131 PRTPCNAGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRN 172
>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1
Length = 328
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D T +SGG D Q+KM L + Q V HDAPI+ V + PE+N++ATGSWD+T+K WD
Sbjct: 66 DPTHAWSGGLDHQLKMHDL-NTDQENLVGTHDAPIRCVEYCPEVNVMATGSWDQTVKLWD 124
Query: 69 TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
R P T P++ Y L+V ++VGTA R ++V++L+N
Sbjct: 125 PRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRN 166
>sp|Q93454|NPP17_CAEEL Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1
Length = 373
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNL--LATG 58
+L W +D + +F DK+ ++W L S Q V HD P+K WI N L TG
Sbjct: 92 ILDIAWIEDSSKIFIACADKEARLWDLASN-QVAVVGTHDGPVKTCHWINGNNYQCLMTG 150
Query: 59 SWDKTLKYWDTRQ-PNPVHTQQ--LPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
S+DKTL++WD + PN Q LP+R YA V YP+ VV A++++ V+NL+N
Sbjct: 151 SFDKTLRFWDMKNLPNQTQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLEN 205
>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1
Length = 328
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D T +SGG D Q+KM L + Q V HDAPI+ V + PE+N++ TGSWD+T+K WD
Sbjct: 66 DPTHAWSGGLDHQLKMHDL-NTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Query: 69 TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
R P T P++ Y L+V ++VGTA R ++V++L+N
Sbjct: 125 PRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRN 166
>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2
Length = 326
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D T +SGG D Q+KM L + Q V HDAPI+ V + PE+N++ TGSWD+T+K WD
Sbjct: 66 DPTHAWSGGLDHQLKMHDL-NTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Query: 69 TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
R P T P++ Y L+V ++VGTA R ++V++L+N
Sbjct: 125 PRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRN 166
>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1
Length = 326
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D T +SGG D Q+KM L + Q V HDAPI+ V + PE+N++ TGSWD+T+K WD
Sbjct: 66 DPTHAWSGGLDHQLKMHDL-NTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Query: 69 TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
R P T P++ Y L+V ++VGTA R ++V++L+N
Sbjct: 125 PRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRN 166
>sp|Q54S79|WDR3_DICDI WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum
GN=wdr3 PE=3 SV=1
Length = 942
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V+C DD T + +G DK +K+W L G + HD I +V++IP + + S
Sbjct: 576 VMCLDISDDSTLIITGSADKNIKIWGLDYGDCHKSFFAHDDSIMQVSFIPSTHHFISASK 635
Query: 61 DKTLKYWDTRQPNPVHT-QQLPDRCYALTVRY--PLMVVGTADRNLVVFN 107
DK +KYWD + + T + ++L + + G+ DR++ +FN
Sbjct: 636 DKRIKYWDADKFEHIQTIEAHHGEVWSLAMGSVGDFFISGSHDRSIRIFN 685
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 32/67 (47%)
Query: 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD 61
LC+ + V G ++++ L S + ++ H+ + + P++ + +G D
Sbjct: 439 LCTVFAPGNLHVIVGTKTGTIEVFELASAARVASIKAHEGSVWSLVLTPDLRGVTSGGAD 498
Query: 62 KTLKYWD 68
K +K+WD
Sbjct: 499 KLVKFWD 505
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V T+ G + SG D +V +W +++ + H I V + N L T S
Sbjct: 104 VTTMTFNRLGNILVSGSKDTEVIVWDIITESGLFRLRGHRDQITSVKLLERSNHLITSSK 163
Query: 61 DKTLKYWDTRQPNPVHT 77
D +K WDT + + T
Sbjct: 164 DGFIKIWDTETQHCIQT 180
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 21/114 (18%)
Query: 13 VFSGGCDKQVKMWPL---------------LSGGQPVTVAMHDAPIKEVAWIPEMNLLAT 57
V SGG DK VK W LS + + V ++ + + + + LA
Sbjct: 492 VTSGGADKLVKFWDFELIASQENSKHKVLNLSLTKTLKV---ESDVLALKYSADNKFLAV 548
Query: 58 GSWDKTLK--YWDTRQPN-PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNL 108
D T+K Y DT + + ++ +LP C ++ L++ G+AD+N+ ++ L
Sbjct: 549 SLLDNTVKIFYTDTVKFHLSLYGHKLPVMCLDISDDSTLIITGSADKNIKIWGL 602
>sp|P20053|PRP4_YEAST U4/U6 small nuclear ribonucleoprotein PRP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRP4 PE=1
SV=1
Length = 465
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V +++ DG+ V SGG D +W + SG + +T+A H PI VAW P +ATG
Sbjct: 310 VFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQVATGGG 369
Query: 61 DKTLKYWDTRQPNPVHTQQ-LPDRCYALTVRY 91
D + WD R+ + Q L R VR+
Sbjct: 370 DGIINVWDIRKRDEGQLNQILAHRNIVTQVRF 401
>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1
Length = 314
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D + SGG DK+V +W + SG + H I+ + P +N LATGSWD T+ WD
Sbjct: 116 DSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWD 175
Query: 69 TRQPNPV--------HTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107
R P H+ + CY+ + L+ G+ D+ + ++
Sbjct: 176 LRMVTPAVSHQALEGHSANISCLCYSAS---GLLASGSWDKTIHIWK 219
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG S CD V++W + + H ++ V++ P+ LA+G WDK + WD
Sbjct: 74 DGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWD 133
Query: 69 TRQ 71
+
Sbjct: 134 VQS 136
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 63
S + DG + +G D V W SG + H P+K + P+ +L A+ S D T
Sbjct: 27 SAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCT 86
Query: 64 LKYWDTRQPNPVHTQQLPDRCYALTVRYP---LMVVGTADRNLVVFNLQNPQ 112
++ WD + + + R P + G D+ ++++++Q+ Q
Sbjct: 87 VRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQ 138
>sp|Q9D994|WDR38_MOUSE WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1
Length = 303
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D + SGG DK+ +W + SG + + H I+ + P + LATGSWD T+ WD
Sbjct: 121 DSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWD 180
Query: 69 TRQPNPV--------HTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107
R PV HT + CY+ + L+ G+ D+ + V+
Sbjct: 181 LRASTPVVSYHNLEGHTGNISCLCYSAS---GLLASGSWDKTICVWK 224
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V CS + DG T+ + D V +W SG +A H P+K + P+ L+A+ S
Sbjct: 29 VNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSS 88
Query: 61 DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYP---LMVVGTADRNLVVFNLQNPQ 112
D +++ WD + +H + R P + G D+ +V+ +Q+ +
Sbjct: 89 DHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGR 143
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + S D +++W + + H ++ V++ P+ LA+G WDK W+
Sbjct: 79 DGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWE 138
Query: 69 TRQPNPVH 76
+ VH
Sbjct: 139 VQSGRRVH 146
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 15 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
SG DK + +W + P+ + H + +A+ P+ LA+ + +T+K WD
Sbjct: 213 SGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWD 266
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG+T+ SG D+ V++W + S T H + + V + P+ ++LA+GS DKT++ WD
Sbjct: 1211 DGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWD 1270
Query: 69 TRQPNPVHTQQ 79
+HT Q
Sbjct: 1271 ISSSKCLHTFQ 1281
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG+ + SG DK V++W + S T H + VA+ P+ ++LA+GS D+T++ W+
Sbjct: 1253 DGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWE 1312
Query: 69 TRQPNPVHTQQ 79
+HT Q
Sbjct: 1313 ISSSKCLHTFQ 1323
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
T+ DGT + SG D+ V++W + SG T H + V + P+ +LA+GS D+T+
Sbjct: 1333 TFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTV 1392
Query: 65 KYWDTRQPNPVHTQQLPDRCYALTVRYP---LMVVGTADRNLVVFNLQN 110
+ W ++T Q + V P L+ G+ D+ + ++N+ +
Sbjct: 1393 RLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISS 1441
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
+ DG + SG D+ V++W + SG T+ H + ++ V + P+ +LA+G D+ ++
Sbjct: 1040 FSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVR 1099
Query: 66 YWDTRQPNPVHTQQ 79
WD N ++T Q
Sbjct: 1100 LWDISSGNCLYTLQ 1113
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DGT + SG D+ V++W + SG T+ H ++ VA+ + +LA+GS D+T+K WD
Sbjct: 1421 DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWD 1480
Query: 69 TRQPNPVHT 77
+ + T
Sbjct: 1481 VKTGECIKT 1489
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
+ DG + SG D+ V++W + SG T H + ++ V + P +LA+GS D+T++
Sbjct: 914 FSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVR 973
Query: 66 YWD 68
WD
Sbjct: 974 LWD 976
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + SG D+ V++W + SG T+ H+ + + + P+ LLA+GS D+T++ W+
Sbjct: 1379 DGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWN 1438
Query: 69 TRQPNPVHT 77
++T
Sbjct: 1439 ISSGECLYT 1447
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG+ + +G D+ V++W + S H + ++ V + + +LA+GS D+T++ WD
Sbjct: 1001 DGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWD 1060
Query: 69 TRQPNPVHTQQLPDRCYALTVRYP--LMVVGTADRNLV 104
N ++T Q C V P M+ D +V
Sbjct: 1061 ISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIV 1098
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG T+ SG D+ V++W + S + H + + V + P+ + LA+GS D+T++ W+
Sbjct: 1169 DGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWE 1228
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G T+ +G D+ V++W + S T+ H + VA+ P+ LA+GS D+T++ WD
Sbjct: 1127 NGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWD 1186
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + SG D+ V++W + S T H + + V + P+ +LA+GS D+T++ W
Sbjct: 1295 DGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLW 1353
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + SGG D+ V++W + SG T+ + + ++ + + P LA GS D+ ++ WD
Sbjct: 1085 DGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWD 1144
Query: 69 TRQPNPVHTQQ 79
++T Q
Sbjct: 1145 ISSKKCLYTLQ 1155
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 15 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
SG D+ V++W + SG H + VA+ + ++LATGS D+T++ WD
Sbjct: 965 SGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWD 1018
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
VL + DG +G V+ W +G + +T H++ + V + + +LA+GS
Sbjct: 867 VLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSD 926
Query: 61 DKTLKYWD 68
D+T++ WD
Sbjct: 927 DQTVRLWD 934
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog
OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
Length = 837
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SGG D VK+W L +G H+ I+ + + P LLATGS D+T+K+WD
Sbjct: 154 DGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWD 213
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
V +G +K+W L T+ H + V + P A+GS D LK WD R+
Sbjct: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
Query: 73 NPVHT 77
+HT
Sbjct: 134 GCIHT 138
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 15 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP 74
+GG D +V +W + +++ H + I V + L+A G+ T+K WD +
Sbjct: 34 TGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKI 93
Query: 75 VHTQQLPDRCYALTVRY----PLMVVGTADRNLVVFNLQ 109
V T R ++V + G+ D NL +++++
Sbjct: 94 VRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131
>sp|O42860|BUB3_SCHPO Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bub3 PE=1 SV=1
Length = 320
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D T G D V L + + H + ++ + N +GSWDK+ + WD
Sbjct: 65 DEKTALVGNLDGTVTTLDLNTRNHEF-LGNHGKGVSCISKLRLENCFISGSWDKSFRVWD 123
Query: 69 TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
R PV Q + + +A + R ++V+G ++R +V++++N
Sbjct: 124 VRVKQPVEGQDIGKKIFASSSRDNILVLGCSERENLVYDIRN 165
>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina
GN=HET-E1 PE=4 SV=1
Length = 1356
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
VL + DG V SG DK +K+W SG T+ H + VA+ P+ +A+GS
Sbjct: 970 VLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSD 1029
Query: 61 DKTLKYWDT 69
DKT+K WDT
Sbjct: 1030 DKTIKIWDT 1038
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
VL + DG V SG DK +K+W SG T+ H + VA+ P+ +A+GS
Sbjct: 844 VLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSD 903
Query: 61 DKTLKYWD 68
DKT+K WD
Sbjct: 904 DKTIKIWD 911
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 42/90 (46%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG DK +K+W SG T+ H ++ VA+ P+ +A+GS D T+K WD
Sbjct: 1188 DGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWD 1247
Query: 69 TRQPNPVHTQQLPDRCYALTVRYPLMVVGT 98
T T + L+ Y + T
Sbjct: 1248 TASGTCTQTLNVGSTATCLSFDYTNAYINT 1277
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG D +K+W SG T+ H ++ VA+ P+ +A+GS DKT+K WD
Sbjct: 1146 DGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWD 1205
Query: 69 T 69
T
Sbjct: 1206 T 1206
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG D +K+W SG T+ H + + VA+ P+ +A+GS DKT+K WD
Sbjct: 936 DGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 995
Query: 69 T 69
T
Sbjct: 996 T 996
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG DK +K+W SG T+ H ++ V + P+ +A+GS D T+K WD
Sbjct: 1020 DGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWD 1079
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG D +K+W SG T+ H + VA+ P+ +A+GS D T+K WD
Sbjct: 1104 DGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWD 1163
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG V SG D +K+W +SG T+ H + VA+ P+ +A+GS D T+K WD
Sbjct: 1062 DGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWD 1121
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D V SG DK +K+W SG T+ H ++ VA+ P+ +A+GS D T+K WD
Sbjct: 894 DRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWD 953
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 35 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
T+ H + + VA+ + +A+GS DKT+K WDT
Sbjct: 836 TLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDT 870
>sp|Q9UTC7|YIDC_SCHPO Uncharacterized WD repeat-containing protein C227.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC227.12 PE=4 SV=1
Length = 462
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG+ V SGG D ++W L SG + + H I +AW P LAT S D T+K WD
Sbjct: 318 DGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWD 377
Query: 69 TRQPNPVHT 77
R+ + HT
Sbjct: 378 LRKVSLAHT 386
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 2 LCSTWKDDGT--TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS 59
LC W D T+ +G D V +W + + H A + VA+ P + L + S
Sbjct: 225 LCQAWDADSEQLTLATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSAS 284
Query: 60 WDKTLKYWD 68
+D T + WD
Sbjct: 285 FDTTWRLWD 293
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE--MNLLATG 58
++ W +G + + D VK+W L T+ H + + +V +I +AT
Sbjct: 352 IVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRFIATS 411
Query: 59 SWDKTLKYWD 68
+D +K W+
Sbjct: 412 GYDGCVKLWN 421
>sp|Q9Y0T2|FBXA_DICDI F-box/WD repeat-containing protein A OS=Dictyostelium discoideum
GN=fbxA PE=1 SV=2
Length = 1247
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
VF+ DK K+W L +G T+ H + + I + L TGS DKTLK WD RQ
Sbjct: 1051 VFTTSSDKSAKVWDLTNGTCINTLVGHSYAVNCIEPIGDYMAL-TGSTDKTLKLWDLRQA 1109
Query: 73 NPV-------HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
+ HT P RC + + +++ G+ D +++ FNL N
Sbjct: 1110 STFISSYSTKHTG--PIRCISYQEKNGIVLSGSDDGSIIAFNLDN 1152
>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum
GN=wdr5 PE=3 SV=1
Length = 335
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + S DK +K+W G T+ H I ++AW + L+ + S DKT+K WD
Sbjct: 57 DGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWD 116
Query: 69 TRQPNPVHTQQLPDRCYALTVRY----PLMVVGTADRNLVVFNLQNPQ 112
V T + + Y V + L+V G+ D N+ ++++ +
Sbjct: 117 VESGKMVKTLK-GHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGE 163
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ SG D+ V++W + +G ++ H P+ V + + L+ +GS+D T++ WDT
Sbjct: 145 IVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTG 204
Query: 73 NPVHTQQLPDRCYALTVRYP----LMVVGTADRNLVVFNLQNPQ 112
++T D V++ ++ GT D L +++ N +
Sbjct: 205 QLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNK 248
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + V++ P+ NL+ +GS+D+ ++
Sbjct: 96 WSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVR 155
Query: 66 YWD 68
WD
Sbjct: 156 IWD 158
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI---PEMNLLATGSWDKTLK 65
DGT V SG D V++W +G T++ D KEV+++ P + G+ D TL+
Sbjct: 183 DGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDG--KEVSFVKFSPNGKFVLAGTLDNTLR 240
Query: 66 YW---DTRQPNPVHTQQLPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
W + ++ +T ++ Y + + + +V G+ D + ++NLQ +
Sbjct: 241 LWSYNNNKKCLKTYTGHKNEK-YCIFSTFSVTCGKWIVTGSEDNLIYIYNLQTRE 294
>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2
SV=1
Length = 334
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 66 YWDTR 70
WD +
Sbjct: 155 IWDVK 159
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 192 DGLCRIWDT 200
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 68 DTRQPNPVHTQQL-PDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 242 DYSKGKCLKTYTCHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2
SV=1
Length = 334
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 66 YWDTR 70
WD +
Sbjct: 155 IWDVK 159
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 192 DGLCRIWDT 200
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1
Length = 334
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 66 YWDTR 70
WD +
Sbjct: 155 IWDVK 159
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 192 DGLCRIWDT 200
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1
Length = 334
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 66 YWDTR 70
WD +
Sbjct: 155 IWDVK 159
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 192 DGLCRIWDT 200
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1
Length = 334
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + NLL + S DKTLK WD
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 66 YWDTR 70
WD +
Sbjct: 155 IWDVK 159
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 192 DGLCRIWDT 200
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ +
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>sp|Q9VU65|POC1_DROME POC1 centriolar protein homolog OS=Drosophila melanogaster
GN=Poc1 PE=2 SV=1
Length = 391
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + + D V +W L + + A H AP+ VAW P+ NL+A+ D+T+K W+
Sbjct: 29 DGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKIWE 88
Query: 69 TR 70
+
Sbjct: 89 PK 90
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 17 GCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 75
GC++ +K++ + SG Q + + +H AP+ +VA+ P + L +GS D+T++ D + P+
Sbjct: 206 GCNR-IKIFDV-SGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPI 263
Query: 76 HT 77
+T
Sbjct: 264 YT 265
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 WKDDGTTVFSGGCDKQVKMW-PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
W G V S G D+ VK+W P L G VA H ++ V + +L+ T S DK+
Sbjct: 68 WSPKGNLVASAGHDRTVKIWEPKLRGVSGEFVA-HSKAVRSVDFDSTGHLMLTASDDKSA 126
Query: 65 KYW 67
K W
Sbjct: 127 KIW 129
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G + SG D+ +++ LL G T+ H + VA+ + + ATG D+ L W +
Sbjct: 240 GHFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQS 299
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V + + +G V + DK V+++ + SG T A +++AW P N+LA
Sbjct: 147 VRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALG 206
Query: 61 DKTLKYWDTR-----QPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNL 108
+K +D Q VH+ + D + + + ++ G+ DR + + +L
Sbjct: 207 CNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHF--LLSGSDDRTIRILDL 257
>sp|P78972|SLP1_SCHPO WD repeat-containing protein slp1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=slp1 PE=1 SV=1
Length = 488
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLAT--GSWDK 62
W+ DG + SGG D V++W S T H+A +K VAW P + NLLAT G+ DK
Sbjct: 312 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 371
Query: 63 TLKYWDTRQPNPVHT 77
+ +W+ V+T
Sbjct: 372 QIHFWNAATGARVNT 386
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 19 DKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
D + +W S G + V + HD + A P+ +L+T + D+ LK+W
Sbjct: 413 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 463
>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1
Length = 370
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG+ + SG D+ V +W +G + T+A H + +VAW P LAT + D +LK WD
Sbjct: 51 DGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWD 110
Query: 69 TR 70
Sbjct: 111 AE 112
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G + SG D+ +++W + SG V H P+ A+ + +++ T S D ++ WDT
Sbjct: 137 GHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDT 196
Query: 70 RQPNPVHTQQLPDR 83
+ + + T L DR
Sbjct: 197 QTGHCLKT--LFDR 208
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77
H + V + P+ +LLA+GS D+T+ WD V+T
Sbjct: 39 HTKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNT 77
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus
GN=KATNB1 PE=2 SV=2
Length = 657
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + DG + S D VK+W L +G H P+ V + P LLA+GS
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSS 209
Query: 61 DKTLKYWDTRQPNPV---HTQQLPDRC 84
D+T+++WD + + V + P RC
Sbjct: 210 DRTIRFWDLEKFHVVSCIEEEATPVRC 236
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD- 68
G+ V SG D +K+W + G H ++ + + P+ LA+ + D T+K WD
Sbjct: 117 GSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDL 176
Query: 69 ---------TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109
T PV+ + Y L+ G++DR + ++L+
Sbjct: 177 TAGKVMFEFTGHSGPVNVVEFHPSEY-------LLASGSSDRTIRFWDLE 219
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ +G +++W L + T+ H A I + + P + +A+GS D +K WD R+
Sbjct: 78 IVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRK 137
Query: 73 NPV-----HTQQLPDRCYALT 88
+ HTQ + RC +
Sbjct: 138 GCIFKYKSHTQAV--RCLRFS 156
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66
K G + +GG D +V +W + +++ H PI+ + + L+ GS +++
Sbjct: 30 KSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRV 89
Query: 67 WD 68
WD
Sbjct: 90 WD 91
>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis
GN=katnb1 PE=1 SV=1
Length = 655
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + DG + S D VK+W L +G ++ H P+ + + P LLA+GS
Sbjct: 150 VRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSA 209
Query: 61 DKTLKYWDTRQ 71
D+T+++WD +
Sbjct: 210 DRTVRFWDLEK 220
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ +G +++W L + T+ H A + + + P +A+GS D +K WD R+
Sbjct: 78 IVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRK 137
Query: 73 NPV-----HTQQLPDRCYALT 88
V HTQ + RC +
Sbjct: 138 GCVFRYKGHTQAV--RCLRFS 156
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66
+ G V +GG D +V +W + +++ H P++ V + L+ GS +L+
Sbjct: 30 RSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVESVRFNNSEELIVAGSQSGSLRI 89
Query: 67 WD 68
WD
Sbjct: 90 WD 91
>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis
GN=katnb1 PE=2 SV=1
Length = 655
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + DG + S D VK+W L +G ++ H P+ + + P LLA+GS
Sbjct: 150 VRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSA 209
Query: 61 DKTLKYWDTRQ 71
D+T+++WD +
Sbjct: 210 DRTVRFWDLEK 220
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66
K G V +GG D +V +W + +++ H P++ V + L+ GS +L+
Sbjct: 30 KSSGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVESVRFNNAEELIVAGSQSGSLRV 89
Query: 67 WD 68
WD
Sbjct: 90 WD 91
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ +G +++W L + T+ H A + + + P + +A+GS D +K WD R+
Sbjct: 78 IVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRK 137
Query: 73 NPV-----HTQQLPDRCYALT 88
V HTQ + RC +
Sbjct: 138 GCVFRYKGHTQAV--RCLRFS 156
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V + DG T+ S DK +K+W + G T+ H ++ VA+ P+ N LA+ +
Sbjct: 729 VFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAA 788
Query: 61 DKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFN 107
D T+K WD Q + T + R A + + G+ DR + ++N
Sbjct: 789 DHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWN 838
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + DG T+ S D +K+W + G T+ H ++ VA+ + LA+GS
Sbjct: 771 VRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSG 830
Query: 61 DKTLKYWDTRQPNPV-----HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109
D+T+K W+ + HT + Y+ + ++V G+ DR + +++ Q
Sbjct: 831 DRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSK--ILVSGSGDRTIKLWDCQ 882
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + S G D+ VK+W + G T+ H+ + VA+ P+ LA+ S DKT+K WD
Sbjct: 695 DGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWD 754
Query: 69 TRQPNPVHT 77
+ + T
Sbjct: 755 IQDGTCLQT 763
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
G + +G D VK+W + +G T++ H I +AW P+ LLA+ S D++++ WD
Sbjct: 1032 GKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWD 1090
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
+L W DG + S D+ V++W +G + H + + P ++AT S
Sbjct: 1065 ILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCST 1124
Query: 61 DKTLKYWDTRQ 71
D+T+K WD +Q
Sbjct: 1125 DQTVKIWDWQQ 1135
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V + + +G + + D+ VK+W G T+ H + ++A+ P+ +LA+ S
Sbjct: 1107 VYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASH 1166
Query: 61 DKTLKYWD 68
D+T++ WD
Sbjct: 1167 DQTVRIWD 1174
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + S D+ V++W + +G H + VA+ P+ ++A+GS D+T++ W+
Sbjct: 1157 DGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWN 1216
Query: 69 TR 70
+
Sbjct: 1217 VK 1218
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D T+ S D V++W + +G + H + V + P+ ++ATGS D T+K W+
Sbjct: 989 DSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWN 1048
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2 LCST-WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
+CS + DG T+ D+ V++W +G + VA+ P+ +LA+GS
Sbjct: 897 VCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSN 956
Query: 61 DKTLKYWD 68
DKT+K WD
Sbjct: 957 DKTVKLWD 964
>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1
Length = 1683
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V ++ DG T+ SGG DK +K+W G T+ H+ + V + P+ LA+ S
Sbjct: 1116 VYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASS 1175
Query: 61 DKTLKYWDT 69
D ++K WDT
Sbjct: 1176 DHSIKLWDT 1184
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V ++ DG + S DK +++W SG ++ H+ + V + P+ ++LA+ S
Sbjct: 1491 VFWVSFSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSA 1550
Query: 61 DKTLKYWDTRQPNPVHT 77
DKT+K W + + +HT
Sbjct: 1551 DKTVKLWRSHDGHLLHT 1567
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG + S D +K+W SG +T+ H A + V + P+ +A GS DKT+K W
Sbjct: 1166 DGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLW 1224
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG T+ SG DK +K+W G T+ H+ + V++ P+ +A+G DKT+K W
Sbjct: 1083 DGQTIASGSLDKTIKLWSR-DGRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQ 1141
Query: 69 T 69
T
Sbjct: 1142 T 1142
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG T+ S D VK+W + G T+ H + V++ P+ ++A+ S DKT++ WD
Sbjct: 1457 DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSPDGKIIASASADKTIRLWD 1516
Query: 69 TRQPNPVHT 77
+ N + +
Sbjct: 1517 SFSGNLIKS 1525
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V+ + DG T+ +G DK VK+W G T+ H + +++ P+ LA+ S
Sbjct: 1200 VITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASA 1259
Query: 61 DKTLKYW 67
DKT+K W
Sbjct: 1260 DKTIKLW 1266
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
G + S DK VK+W + G T+ HD + +V + P+ LA+ S D T+K W+
Sbjct: 1416 GDLIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWN 1474
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
+ DG + S D +K+W G + T H + V ++P+ N++A+ S D T++
Sbjct: 1289 FSSDGKAIASASRDNTIKLWNR-HGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIR 1347
Query: 66 YWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGT--ADRNLVVFNLQN 110
W +P+ YA++ + ++ T AD N+ +++ Q+
Sbjct: 1348 LWQRPLISPLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQD 1394
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ DG T+ S DK +K+W + G T+ H+ + +V + + +A+ S D T+
Sbjct: 1246 SFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTI 1305
Query: 65 KYWD 68
K W+
Sbjct: 1306 KLWN 1309
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V S++ DG + S DK VK+W + G T+ H A + + P+ L +GS
Sbjct: 1575 VYSSSFSPDGRYIASASEDKTVKIWQI-DGHLLTTLPQHQAGVMSAIFSPDGKTLISGSL 1633
Query: 61 DKTLKYW--DTRQ 71
D T K W D++Q
Sbjct: 1634 DTTTKIWRFDSQQ 1646
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG+ + + G D +++W G T+ + A I +++ P+ +L+A+ + DKT+K W
Sbjct: 1374 DGSIIATAGADGNIQLWHSQDGSLLKTLPGNKA-IYGISFTPQGDLIASANADKTVKIWR 1432
Query: 69 TRQPNPVHT 77
R + T
Sbjct: 1433 VRDGKALKT 1441
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S DK VK+W G T + H + ++ P+ +A+ S DKT+K W
Sbjct: 1541 DGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIW 1599
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 9 DGTTVFSGGCDKQVKMW--PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66
D + S D +++W PL+S P+ V ++ + V+++ + +++AT D ++
Sbjct: 1333 DSNIIASASLDNTIRLWQRPLIS---PLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQL 1389
Query: 67 WDTRQPNPVHTQQLPDRCYAL--TVRYPLMVVGTADRNLVVFNLQN 110
W ++ + + T Y + T + L+ AD+ + ++ +++
Sbjct: 1390 WHSQDGSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRVRD 1435
>sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1
Length = 605
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
VLC T+ D T + SG D VK+W SGG+ +T+ H P+ V I + L+ +GS
Sbjct: 356 VLCLTF--DSTLLVSGSADCTVKLWHF-SGGKRITLRGHTGPVNSVRIIRDRGLVLSGSD 412
Query: 61 DKTLKYWDTRQPNPVHT 77
D T+K W +HT
Sbjct: 413 DSTIKIWSLETNTCLHT 429
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D V SG D +K+W L + T + H P++ +A L + S D T+K WD
Sbjct: 403 DRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSR--LFSCSLDGTIKQWD 460
Query: 69 TRQPNPVHT 77
+ VHT
Sbjct: 461 IEKKKCVHT 469
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 15 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP 74
SG D +++W L + Q + H + + + + + L +GS DKT++ W+ R
Sbjct: 288 SGSYDATIRLWNLATFQQVALLEGHSSGVTCLQF--DQCKLISGSMDKTIRIWNYRTSEC 345
Query: 75 V-----HTQQLPDRCYALTVRYPLMVVGTAD 100
+ HT D LT L+V G+AD
Sbjct: 346 ISILHGHT----DSVLCLTFDSTLLVSGSAD 372
>sp|O94365|UTP15_SCHPO U3 small nucleolar RNA-associated protein 15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=utp15 PE=3 SV=1
Length = 494
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70
TT SG DK VK+W L +G ++ H+ ++ +W+ L+ +G +D T++ WDTR
Sbjct: 137 TTFLSGSDDKTVKVWDLSTGAVQYDLSGHEDYVRTASWMSATRLV-SGGYDGTIRLWDTR 195
Query: 71 QPNP 74
+P
Sbjct: 196 IADP 199
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + DG + S D VK+W L +G H P+ V + P LLA+GS
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 61 DKTLKYWDTR----------QPNPVHTQQL-PDRC 84
D+T+++WD +P PV + PD C
Sbjct: 210 DRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGC 244
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G V SG D +K+W + G H ++ + + P+ LA+ + D T+K WD
Sbjct: 117 GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDL 176
Query: 70 RQPN-----PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
P HT P L+ G++DR + ++L+ Q
Sbjct: 177 TAGKMMSEFPGHTG--PVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQ 222
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ +G +++W L + T+ H A I + + P +A+GS D +K WD R+
Sbjct: 78 IVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRK 137
Query: 73 NPV-----HTQQLPDRCYALT 88
V H+Q + RC +
Sbjct: 138 GCVFRYRGHSQAV--RCLRFS 156
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66
K G + +GG D +V +W + +++ H +P++ V L+ GS +++
Sbjct: 30 KASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRV 89
Query: 67 WD 68
WD
Sbjct: 90 WD 91
>sp|Q9BRX9|WDR83_HUMAN WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83
PE=1 SV=1
Length = 315
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
D +++ SGG DK V +W + SG H + V + E ++ +GS D +++ WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWD 137
Query: 69 --TRQPNPVHT-QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
+R+P PV T + D ++ V ++ G+ D + ++L+ Q
Sbjct: 138 CRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQ 184
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
DG + G DK +K+W L G T + H + + A + + L +G DK + WD
Sbjct: 36 DGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWD 95
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + DG + S D VK+W L +G H P+ V + P LLA+GS
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 61 DKTLKYWDTR----------QPNPVHTQQL-PDRC 84
D+T+++WD +P PV + PD C
Sbjct: 210 DRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGC 244
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G V SG D +K+W + G H ++ + + P+ LA+ + D T+K WD
Sbjct: 117 GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDL 176
Query: 70 RQPN-----PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112
P HT P L+ G++DR + ++L+ Q
Sbjct: 177 TAGKMMSEFPGHTG--PVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQ 222
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72
+ +G +++W L + T+ H A I + + P +A+GS D +K WD R+
Sbjct: 78 IVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRK 137
Query: 73 NPV-----HTQQLPDRCYALT 88
V H+Q + RC +
Sbjct: 138 GCVFRYRGHSQAV--RCLRFS 156
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66
K G + +GG D +V +W + +++ H +P++ V L+ GS +++
Sbjct: 30 KASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRV 89
Query: 67 WD 68
WD
Sbjct: 90 WD 91
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + DG + S D VK+W L++G H + + V + P LLA+GS
Sbjct: 150 VRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSA 209
Query: 61 DKTLKYWDTRQPNPVHTQQ 79
D+T+K WD + N + + +
Sbjct: 210 DRTVKLWDLEKFNMIGSSE 228
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + V +G +++W L + T+ H A I + + P LA+GS
Sbjct: 66 VGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSV 125
Query: 61 DKTLKYWDTRQPNPV-----HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNL 108
D +K WD R+ V HTQ + RC A + + + D + +++L
Sbjct: 126 DSNIKLWDVRRKGCVFRYKGHTQAV--RCLAFSPDGKWLASASDDSTVKLWDL 176
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD- 68
G + SG D +K+W + G H ++ +A+ P+ LA+ S D T+K WD
Sbjct: 117 GEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDL 176
Query: 69 ---------TRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109
T + V+ Q Y L+ G+ADR + +++L+
Sbjct: 177 IAGKMITEFTSHTSAVNVVQFHPNEY-------LLASGSADRTVKLWDLE 219
>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1
Length = 361
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68
+G + S DK +K+W G T++ H I +VAW + LL +GS DKTLK W+
Sbjct: 83 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWE 142
Query: 69 TRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 109
+ T + C + L+V G+ D ++ +++++
Sbjct: 143 LSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 186
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65
W D + SG DK +K+W L +G T+ H + + P+ NL+ +GS+D++++
Sbjct: 122 WSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 181
Query: 66 YWDTR 70
WD R
Sbjct: 182 IWDVR 186
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
V C + + SG D+ V++W + +G T+ H P+ V + + +L+ + S+
Sbjct: 159 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 218
Query: 61 DKTLKYWDT 69
D + WDT
Sbjct: 219 DGLCRIWDT 227
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYW 67
DG+ + S D ++W SG T+ D P + V + P + + D TLK W
Sbjct: 209 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 268
Query: 68 DTRQPNPVHTQQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 112
D + + T + Y + + + +V G+ D + ++NLQ+ +
Sbjct: 269 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKE 319
>sp|Q5BK30|WDR69_RAT Outer row dynein assembly protein 16 homolog OS=Rattus norvegicus
GN=Wdr69 PE=2 SV=1
Length = 415
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
++C ++ T V +G D K+W + SG + VT+ H A I +++ + + TGS+
Sbjct: 180 IVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRIITGSF 239
Query: 61 DKTLKYWDTRQPNPVHT 77
D T+ WD VHT
Sbjct: 240 DHTVVVWDASTGRKVHT 256
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 60
++ ++ G + +G D V +W +G + T+ H A I + + +L+ TGS
Sbjct: 222 IISLSFDTSGDRIITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSM 281
Query: 61 DKTLKYWDTRQPNPV-----HTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107
DKT WD V H ++ D C+ T + L+ +AD V+N
Sbjct: 282 DKTCMLWDATSGKCVATLTGHDDEILDSCFDYTGK--LIATASADGTARVYN 331
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69
G + +G DK K+W +G T H A I +++ P+ ++ATGS D T K WD
Sbjct: 147 GDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDI 206
Query: 70 RQPNPVHT 77
+ V T
Sbjct: 207 QSGEEVVT 214
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-PEMNLLATGSWDKTLKYWD 68
G+ +G D+ K+W SG + T+ H + +A+ P + +ATGS+DKT K W
Sbjct: 104 GSCFITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWS 163
Query: 69 TRQPNPVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110
HT C + + ++ G+ D ++++Q+
Sbjct: 164 AETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQS 208
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70
H+ I ++++ P+ N L TGS DKT + WD +
Sbjct: 344 HEGEISKISFNPQGNRLLTGSSDKTARIWDVQ 375
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77
H P+ VA + TGS+D+T K WDT +HT
Sbjct: 91 HILPLTNVALNKAGSCFITGSYDRTCKVWDTASGEELHT 129
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64
++ G + +G DK ++W + +G + H I A+ + N++ TGS D +
Sbjct: 352 SFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNSC 411
Query: 65 KYW 67
+ W
Sbjct: 412 RIW 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,107,053
Number of Sequences: 539616
Number of extensions: 1725160
Number of successful extensions: 9092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 415
Number of HSP's that attempted gapping in prelim test: 4615
Number of HSP's gapped (non-prelim): 4366
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)