Query 045566
Match_columns 112
No_of_seqs 202 out of 1656
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 03:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.7E-28 1.9E-32 138.2 10.6 111 1-111 118-237 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-28 5.1E-33 141.3 8.3 111 1-111 264-377 (459)
3 KOG0263 Transcription initiati 99.9 6.3E-27 1.4E-31 143.1 11.9 111 1-111 538-651 (707)
4 KOG0266 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 135.4 14.6 112 1-112 206-321 (456)
5 KOG0272 U4/U6 small nuclear ri 99.9 1.2E-25 2.5E-30 130.3 10.7 111 1-111 306-420 (459)
6 PTZ00421 coronin; Provisional 99.9 2E-24 4.4E-29 131.4 16.1 112 1-112 78-201 (493)
7 KOG0263 Transcription initiati 99.9 3.9E-25 8.5E-30 135.4 11.1 112 1-112 496-610 (707)
8 KOG0279 G protein beta subunit 99.9 1.7E-24 3.8E-29 120.2 12.5 112 1-112 66-183 (315)
9 KOG0279 G protein beta subunit 99.9 1.9E-24 4E-29 120.0 12.0 110 1-111 151-264 (315)
10 KOG0284 Polyadenylation factor 99.9 5E-25 1.1E-29 127.5 9.1 111 1-111 183-296 (464)
11 KOG0266 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 127.7 14.2 111 1-111 249-366 (456)
12 PTZ00420 coronin; Provisional 99.9 5.1E-23 1.1E-27 126.5 16.1 112 1-112 77-200 (568)
13 KOG0285 Pleiotropic regulator 99.9 7.7E-24 1.7E-28 121.3 9.6 111 1-111 154-267 (460)
14 KOG0286 G-protein beta subunit 99.9 6.7E-23 1.5E-27 114.7 12.6 111 1-111 189-305 (343)
15 KOG0286 G-protein beta subunit 99.9 8.3E-23 1.8E-27 114.3 12.5 109 2-111 149-261 (343)
16 KOG0291 WD40-repeat-containing 99.9 4.9E-23 1.1E-27 126.7 12.1 109 1-109 353-508 (893)
17 KOG0315 G-protein beta subunit 99.9 1E-22 2.2E-27 112.0 11.4 110 1-111 43-156 (311)
18 KOG0271 Notchless-like WD40 re 99.9 3.7E-23 7.9E-28 119.4 9.9 107 1-107 370-479 (480)
19 KOG0282 mRNA splicing factor [ 99.9 8.7E-24 1.9E-28 124.2 7.0 112 1-112 217-333 (503)
20 PTZ00421 coronin; Provisional 99.9 7.8E-22 1.7E-26 120.2 15.6 111 1-111 128-247 (493)
21 KOG0285 Pleiotropic regulator 99.9 9.5E-23 2.1E-27 116.9 10.8 112 1-112 196-310 (460)
22 KOG0319 WD40-repeat-containing 99.9 3.2E-22 7E-27 122.6 12.6 112 1-112 466-580 (775)
23 KOG0647 mRNA export protein (c 99.9 5.6E-22 1.2E-26 111.4 11.6 111 1-111 30-147 (347)
24 KOG0295 WD40 repeat-containing 99.9 6.7E-22 1.5E-26 113.3 12.1 111 2-112 239-367 (406)
25 KOG0276 Vesicle coat complex C 99.9 2.2E-22 4.7E-27 122.0 9.9 110 2-111 144-259 (794)
26 KOG0275 Conserved WD40 repeat- 99.9 3.1E-23 6.7E-28 118.2 5.0 112 1-112 266-381 (508)
27 KOG0273 Beta-transducin family 99.9 1.3E-21 2.7E-26 115.2 11.7 112 1-112 362-485 (524)
28 KOG0318 WD40 repeat stress pro 99.9 5.1E-21 1.1E-25 114.1 13.5 111 1-111 193-352 (603)
29 KOG0265 U5 snRNP-specific prot 99.9 3.8E-21 8.2E-26 108.0 12.2 110 1-110 50-164 (338)
30 KOG0315 G-protein beta subunit 99.9 5.9E-21 1.3E-25 105.2 12.6 109 1-110 86-198 (311)
31 KOG0645 WD40 repeat protein [G 99.9 8.1E-21 1.8E-25 105.5 13.0 109 1-109 64-180 (312)
32 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.5E-26 120.8 10.6 111 1-111 136-252 (839)
33 KOG0316 Conserved WD40 repeat- 99.9 3.2E-21 6.9E-26 105.6 10.9 111 1-111 20-133 (307)
34 KOG0277 Peroxisomal targeting 99.9 7.4E-21 1.6E-25 105.0 12.2 111 1-111 107-223 (311)
35 KOG0283 WD40 repeat-containing 99.9 3.5E-21 7.6E-26 118.9 11.6 109 1-111 372-483 (712)
36 PTZ00420 coronin; Provisional 99.9 4.4E-20 9.5E-25 113.8 16.0 109 1-110 128-249 (568)
37 KOG0283 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 120.1 9.9 109 1-110 270-441 (712)
38 KOG0284 Polyadenylation factor 99.9 9.5E-22 2.1E-26 114.1 8.0 111 1-112 141-255 (464)
39 KOG0647 mRNA export protein (c 99.9 3.2E-20 7E-25 104.4 13.5 110 1-111 75-186 (347)
40 KOG0289 mRNA splicing factor [ 99.9 1.1E-20 2.5E-25 110.5 11.8 107 1-107 350-460 (506)
41 PLN00181 protein SPA1-RELATED; 99.9 4.7E-20 1E-24 118.3 15.5 111 1-111 535-650 (793)
42 KOG0302 Ribosome Assembly prot 99.9 1.4E-20 2.9E-25 108.6 11.5 109 1-109 260-378 (440)
43 KOG0292 Vesicle coat complex C 99.9 2.2E-21 4.7E-26 121.6 8.8 111 1-111 12-125 (1202)
44 KOG0273 Beta-transducin family 99.9 2.5E-20 5.4E-25 109.8 12.1 109 1-110 238-390 (524)
45 KOG0291 WD40-repeat-containing 99.9 6E-20 1.3E-24 113.4 13.8 111 1-111 310-424 (893)
46 KOG0292 Vesicle coat complex C 99.9 2.4E-20 5.1E-25 117.1 11.3 109 1-109 54-165 (1202)
47 KOG0772 Uncharacterized conser 99.9 5.3E-21 1.2E-25 114.0 8.1 112 1-112 271-397 (641)
48 KOG1446 Histone H3 (Lys4) meth 99.8 2.3E-19 4.9E-24 101.2 13.6 111 1-111 17-172 (311)
49 KOG0265 U5 snRNP-specific prot 99.8 2.9E-20 6.4E-25 104.4 9.7 111 1-111 93-206 (338)
50 KOG0264 Nucleosome remodeling 99.8 4.1E-20 8.8E-25 108.0 10.2 110 1-110 230-348 (422)
51 KOG0289 mRNA splicing factor [ 99.8 2.2E-19 4.8E-24 105.2 12.9 111 1-111 306-421 (506)
52 KOG0295 WD40 repeat-containing 99.8 1.4E-19 2.9E-24 104.0 11.8 99 11-109 305-406 (406)
53 KOG0296 Angio-associated migra 99.8 7.4E-19 1.6E-23 101.0 14.2 110 1-110 67-179 (399)
54 KOG0303 Actin-binding protein 99.8 8.3E-20 1.8E-24 106.0 10.2 112 1-112 84-206 (472)
55 cd00200 WD40 WD40 domain, foun 99.8 1.3E-18 2.9E-23 98.9 15.1 111 1-111 12-125 (289)
56 KOG0316 Conserved WD40 repeat- 99.8 1.3E-19 2.9E-24 99.3 10.4 110 2-111 63-175 (307)
57 KOG0319 WD40-repeat-containing 99.8 8.9E-20 1.9E-24 112.1 10.7 107 1-107 508-617 (775)
58 KOG1273 WD40 repeat protein [G 99.8 1.5E-19 3.3E-24 102.6 10.9 110 2-111 27-185 (405)
59 KOG0277 Peroxisomal targeting 99.8 1.7E-19 3.7E-24 99.7 10.7 110 2-111 64-180 (311)
60 KOG0640 mRNA cleavage stimulat 99.8 9.4E-20 2E-24 103.4 9.3 112 1-112 219-338 (430)
61 PLN00181 protein SPA1-RELATED; 99.8 1.5E-18 3.2E-23 111.5 15.8 110 1-111 486-608 (793)
62 KOG0645 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 96.5 13.8 109 2-110 18-136 (312)
63 KOG0282 mRNA splicing factor [ 99.8 6E-20 1.3E-24 108.4 8.0 110 1-111 261-374 (503)
64 KOG0275 Conserved WD40 repeat- 99.8 1.5E-20 3.2E-25 107.4 5.2 111 2-112 217-339 (508)
65 KOG0318 WD40 repeat stress pro 99.8 1.2E-18 2.6E-23 104.1 13.4 110 2-111 447-562 (603)
66 KOG0973 Histone transcription 99.8 3.5E-19 7.6E-24 112.7 11.7 110 1-110 72-202 (942)
67 cd00200 WD40 WD40 domain, foun 99.8 3.5E-18 7.5E-23 97.2 14.9 111 1-111 96-209 (289)
68 KOG0293 WD40 repeat-containing 99.8 4.5E-19 9.8E-24 103.6 10.8 110 1-110 227-343 (519)
69 KOG0296 Angio-associated migra 99.8 2.6E-18 5.6E-23 98.8 13.6 112 1-112 109-223 (399)
70 KOG0310 Conserved WD40 repeat- 99.8 2E-19 4.3E-24 106.2 8.8 111 1-111 71-186 (487)
71 KOG0310 Conserved WD40 repeat- 99.8 1.7E-18 3.6E-23 102.4 12.5 110 1-111 113-227 (487)
72 KOG0294 WD40 repeat-containing 99.8 1.5E-18 3.2E-23 98.3 11.3 109 2-112 47-160 (362)
73 KOG0643 Translation initiation 99.8 5.9E-18 1.3E-22 94.3 12.6 111 1-111 13-179 (327)
74 KOG0640 mRNA cleavage stimulat 99.8 3.9E-19 8.5E-24 100.9 8.0 111 2-112 116-249 (430)
75 KOG0267 Microtubule severing p 99.8 9.4E-20 2E-24 112.0 5.8 112 1-112 73-187 (825)
76 KOG0305 Anaphase promoting com 99.8 2.2E-18 4.9E-23 103.7 11.1 110 1-110 304-462 (484)
77 KOG1407 WD40 repeat protein [F 99.8 2.9E-18 6.4E-23 95.1 10.6 111 2-112 151-264 (313)
78 KOG0269 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 108.0 9.3 111 1-111 179-298 (839)
79 KOG0281 Beta-TrCP (transducin 99.8 9.1E-19 2E-23 100.8 7.9 107 1-111 200-307 (499)
80 KOG1036 Mitotic spindle checkp 99.8 2.1E-17 4.6E-22 93.2 13.2 109 1-111 57-165 (323)
81 KOG0313 Microtubule binding pr 99.8 5.2E-18 1.1E-22 98.1 10.8 110 1-112 263-379 (423)
82 KOG0281 Beta-TrCP (transducin 99.8 4.2E-19 9.2E-24 102.2 6.1 104 2-111 324-430 (499)
83 KOG0264 Nucleosome remodeling 99.8 3.6E-18 7.7E-23 100.0 9.8 110 3-112 182-306 (422)
84 PF08662 eIF2A: Eukaryotic tra 99.8 5.9E-17 1.3E-21 88.9 14.0 106 1-109 62-179 (194)
85 KOG0276 Vesicle coat complex C 99.8 1.3E-17 2.7E-22 101.8 12.2 111 1-111 100-217 (794)
86 KOG0308 Conserved WD40 repeat- 99.8 9.2E-18 2E-22 102.5 11.5 111 1-111 120-245 (735)
87 KOG0313 Microtubule binding pr 99.8 1.4E-17 3.1E-22 96.2 11.6 111 1-112 196-333 (423)
88 KOG1036 Mitotic spindle checkp 99.8 2E-17 4.4E-22 93.3 11.5 108 1-110 16-125 (323)
89 KOG0267 Microtubule severing p 99.8 5.7E-19 1.2E-23 108.7 5.7 111 1-111 115-228 (825)
90 KOG0270 WD40 repeat-containing 99.8 1.2E-17 2.6E-22 98.0 10.5 109 3-111 248-362 (463)
91 KOG1407 WD40 repeat protein [F 99.8 2.1E-17 4.4E-22 91.9 10.8 108 2-109 193-311 (313)
92 KOG0306 WD40-repeat-containing 99.8 7E-18 1.5E-22 104.5 9.9 108 1-108 553-663 (888)
93 KOG0646 WD40 repeat protein [G 99.8 1.8E-17 3.9E-22 97.7 10.6 111 1-111 84-208 (476)
94 KOG0772 Uncharacterized conser 99.8 3.2E-18 7E-23 102.4 7.5 111 1-111 320-447 (641)
95 KOG0305 Anaphase promoting com 99.8 1.2E-17 2.7E-22 100.6 9.7 109 1-111 220-333 (484)
96 KOG0302 Ribosome Assembly prot 99.8 8.4E-18 1.8E-22 97.3 8.5 111 2-112 215-335 (440)
97 KOG0639 Transducin-like enhanc 99.8 2.5E-18 5.4E-23 102.9 6.4 109 3-111 514-624 (705)
98 KOG1445 Tumor-specific antigen 99.8 3.4E-18 7.4E-23 104.9 7.0 112 1-112 630-753 (1012)
99 KOG0639 Transducin-like enhanc 99.8 5.6E-18 1.2E-22 101.4 7.8 112 1-112 468-584 (705)
100 KOG0274 Cdc4 and related F-box 99.8 1.7E-17 3.7E-22 102.1 9.8 109 1-112 334-444 (537)
101 KOG0274 Cdc4 and related F-box 99.7 2.1E-16 4.6E-21 97.4 14.1 110 1-112 252-362 (537)
102 KOG0306 WD40-repeat-containing 99.7 5.7E-17 1.2E-21 100.6 10.9 110 1-110 511-623 (888)
103 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-17 4.1E-22 99.5 8.3 77 1-77 293-369 (636)
104 KOG0308 Conserved WD40 repeat- 99.7 1.2E-16 2.5E-21 97.8 11.8 111 1-111 174-287 (735)
105 KOG1274 WD40 repeat protein [G 99.7 1.8E-16 4E-21 99.8 12.2 110 1-110 141-263 (933)
106 KOG0973 Histone transcription 99.7 5.6E-17 1.2E-21 103.1 9.9 111 1-111 16-161 (942)
107 KOG1446 Histone H3 (Lys4) meth 99.7 1.6E-15 3.5E-20 85.9 14.5 73 40-112 187-265 (311)
108 KOG0288 WD40 repeat protein Ti 99.7 9E-18 1.9E-22 97.9 5.7 111 1-111 222-332 (459)
109 KOG1332 Vesicle coat complex C 99.7 1.6E-16 3.4E-21 87.7 10.0 104 7-110 20-135 (299)
110 KOG2110 Uncharacterized conser 99.7 1.3E-15 2.7E-20 88.1 14.0 107 4-110 135-249 (391)
111 KOG0278 Serine/threonine kinas 99.7 3.6E-17 7.9E-22 90.7 7.4 110 1-111 103-215 (334)
112 KOG0641 WD40 repeat protein [G 99.7 7.3E-16 1.6E-20 84.8 12.1 109 1-109 234-349 (350)
113 KOG1034 Transcriptional repres 99.7 9.9E-17 2.1E-21 91.6 8.9 102 10-111 105-213 (385)
114 KOG0278 Serine/threonine kinas 99.7 7.3E-16 1.6E-20 85.6 11.8 111 1-111 146-299 (334)
115 KOG0288 WD40 repeat protein Ti 99.7 6.7E-16 1.4E-20 90.3 12.0 102 10-112 312-420 (459)
116 KOG0300 WD40 repeat-containing 99.7 5.9E-17 1.3E-21 92.7 7.5 110 2-112 276-389 (481)
117 KOG0643 Translation initiation 99.7 6.3E-16 1.4E-20 86.4 11.1 111 1-111 55-222 (327)
118 KOG0268 Sof1-like rRNA process 99.7 3.3E-17 7.2E-22 94.5 6.1 108 2-109 233-345 (433)
119 KOG4283 Transcription-coupled 99.7 2.1E-16 4.6E-21 89.4 8.8 111 2-112 147-279 (397)
120 KOG0299 U3 snoRNP-associated p 99.7 1.5E-16 3.2E-21 93.9 8.4 72 1-72 205-276 (479)
121 KOG0293 WD40 repeat-containing 99.7 2.9E-16 6.2E-21 92.1 9.4 110 1-110 272-385 (519)
122 KOG1539 WD repeat protein [Gen 99.7 1.8E-16 3.8E-21 99.2 8.7 106 2-107 538-646 (910)
123 KOG0771 Prolactin regulatory e 99.7 6.2E-16 1.3E-20 90.3 10.3 108 3-111 149-313 (398)
124 KOG1063 RNA polymerase II elon 99.7 5.6E-16 1.2E-20 95.4 9.8 111 1-111 528-650 (764)
125 KOG1310 WD40 repeat protein [G 99.7 5.3E-16 1.1E-20 94.0 9.2 111 1-111 53-180 (758)
126 KOG0649 WD40 repeat protein [G 99.7 2.8E-15 6E-20 83.1 11.2 111 1-112 117-238 (325)
127 KOG1539 WD repeat protein [Gen 99.7 2.9E-15 6.2E-20 93.9 12.3 112 1-112 451-609 (910)
128 KOG0321 WD40 repeat-containing 99.7 6.5E-16 1.4E-20 94.4 9.1 111 1-111 103-250 (720)
129 KOG4283 Transcription-coupled 99.7 2.5E-15 5.3E-20 85.2 10.6 109 1-110 104-220 (397)
130 KOG0642 Cell-cycle nuclear pro 99.7 9.7E-16 2.1E-20 92.4 9.5 110 1-110 297-427 (577)
131 KOG2919 Guanine nucleotide-bin 99.7 1.3E-15 2.7E-20 87.2 9.5 110 1-110 210-328 (406)
132 KOG0646 WD40 repeat protein [G 99.7 9.2E-15 2E-19 86.6 12.9 109 1-109 126-247 (476)
133 KOG0294 WD40 repeat-containing 99.7 5.3E-15 1.1E-19 84.2 11.4 73 1-73 86-160 (362)
134 KOG2445 Nuclear pore complex c 99.7 1.6E-14 3.5E-19 82.1 13.2 111 1-111 16-146 (361)
135 KOG1273 WD40 repeat protein [G 99.7 1.9E-14 4.1E-19 82.3 12.7 108 1-109 68-226 (405)
136 KOG0299 U3 snoRNP-associated p 99.7 4.4E-15 9.5E-20 87.8 10.4 110 1-110 145-275 (479)
137 KOG1009 Chromatin assembly com 99.7 2.7E-15 5.9E-20 87.6 9.4 112 1-112 16-156 (434)
138 KOG0290 Conserved WD40 repeat- 99.7 1.1E-14 2.4E-19 82.4 11.4 111 1-111 153-320 (364)
139 KOG1034 Transcriptional repres 99.6 3.8E-15 8.3E-20 85.2 9.1 70 1-70 138-211 (385)
140 KOG2048 WD40 repeat protein [G 99.6 3.2E-14 7E-19 87.5 13.1 111 1-112 72-187 (691)
141 KOG2055 WD40 repeat protein [G 99.6 3.7E-14 8E-19 84.2 12.9 111 1-111 216-376 (514)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1E-13 2.3E-18 80.1 14.8 111 2-112 160-282 (300)
143 KOG4328 WD40 protein [Function 99.6 5.2E-15 1.1E-19 87.6 9.1 111 1-111 189-355 (498)
144 KOG0641 WD40 repeat protein [G 99.6 2.5E-14 5.5E-19 78.8 11.1 101 9-109 193-303 (350)
145 KOG1274 WD40 repeat protein [G 99.6 2.6E-14 5.7E-19 90.3 12.5 110 1-110 99-219 (933)
146 KOG0268 Sof1-like rRNA process 99.6 3.2E-15 6.9E-20 86.5 7.6 110 1-111 190-304 (433)
147 KOG2096 WD40 repeat protein [G 99.6 4.4E-14 9.6E-19 81.0 12.0 107 1-108 89-257 (420)
148 KOG4378 Nuclear protein COP1 [ 99.6 1.9E-14 4.2E-19 86.4 10.6 109 3-111 169-282 (673)
149 KOG2055 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 84.3 11.5 107 3-110 308-418 (514)
150 KOG1007 WD repeat protein TSSC 99.6 2.2E-14 4.7E-19 81.2 9.9 110 1-112 126-248 (370)
151 KOG0300 WD40 repeat-containing 99.6 3.1E-15 6.7E-20 85.8 6.6 110 1-110 193-345 (481)
152 KOG0303 Actin-binding protein 99.6 1.6E-14 3.5E-19 84.5 9.6 110 1-111 134-251 (472)
153 KOG1445 Tumor-specific antigen 99.6 5.2E-15 1.1E-19 91.3 7.7 109 1-109 680-798 (1012)
154 KOG2394 WD40 protein DMR-N9 [G 99.6 2.2E-14 4.9E-19 86.6 9.9 111 1-111 222-364 (636)
155 KOG1523 Actin-related protein 99.6 8.6E-14 1.9E-18 79.5 11.4 110 1-110 13-131 (361)
156 KOG0301 Phospholipase A2-activ 99.6 4.9E-14 1.1E-18 87.0 10.5 103 2-109 144-249 (745)
157 KOG2111 Uncharacterized conser 99.6 3.6E-13 7.8E-18 76.9 13.2 95 16-110 155-257 (346)
158 KOG1272 WD40-repeat-containing 99.6 8.6E-15 1.9E-19 87.0 6.8 101 4-106 257-359 (545)
159 KOG1523 Actin-related protein 99.6 4.9E-14 1.1E-18 80.5 9.3 107 1-107 58-174 (361)
160 KOG3881 Uncharacterized conser 99.6 1.2E-13 2.7E-18 80.5 11.0 110 2-111 206-322 (412)
161 KOG0301 Phospholipase A2-activ 99.6 3.3E-13 7.1E-18 83.5 13.1 103 2-109 183-288 (745)
162 KOG2096 WD40 repeat protein [G 99.6 1.5E-13 3.2E-18 78.8 10.8 104 5-109 194-308 (420)
163 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.3E-12 2.8E-17 75.6 14.8 109 2-111 34-147 (300)
164 KOG4227 WD40 repeat protein [G 99.6 2.5E-13 5.4E-18 80.0 11.6 111 1-111 59-181 (609)
165 KOG0644 Uncharacterized conser 99.6 3.2E-15 6.9E-20 94.2 4.0 105 1-109 193-300 (1113)
166 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-12 2.5E-17 72.1 13.5 108 3-111 10-135 (194)
167 KOG1408 WD40 repeat protein [F 99.6 2.9E-13 6.3E-18 84.7 11.9 70 1-70 462-534 (1080)
168 KOG1332 Vesicle coat complex C 99.6 1.8E-13 4E-18 75.9 10.0 109 3-111 61-195 (299)
169 KOG0307 Vesicle coat complex C 99.6 7.8E-15 1.7E-19 94.2 5.2 110 2-111 68-194 (1049)
170 KOG2048 WD40 repeat protein [G 99.5 6.5E-13 1.4E-17 82.0 13.0 111 1-111 113-235 (691)
171 KOG1408 WD40 repeat protein [F 99.5 2.3E-13 5E-18 85.1 11.2 108 2-109 600-713 (1080)
172 KOG1538 Uncharacterized conser 99.5 1.2E-13 2.6E-18 85.9 9.8 106 1-107 15-160 (1081)
173 KOG4328 WD40 protein [Function 99.5 7.2E-14 1.6E-18 82.9 7.9 107 2-108 283-398 (498)
174 KOG1188 WD40 repeat protein [G 99.5 2.9E-13 6.3E-18 77.9 9.9 101 11-111 41-198 (376)
175 KOG1272 WD40-repeat-containing 99.5 2.7E-14 5.8E-19 85.0 5.9 109 3-111 214-325 (545)
176 KOG1007 WD repeat protein TSSC 99.5 1.7E-13 3.6E-18 77.7 8.6 105 3-108 175-288 (370)
177 COG2319 FOG: WD40 repeat [Gene 99.5 2.8E-12 6.1E-17 76.3 14.5 111 1-111 158-273 (466)
178 KOG0307 Vesicle coat complex C 99.5 4.4E-14 9.4E-19 90.9 6.9 111 1-111 119-242 (1049)
179 KOG1009 Chromatin assembly com 99.5 6.8E-14 1.5E-18 81.9 7.0 108 1-108 68-194 (434)
180 KOG2106 Uncharacterized conser 99.5 1.3E-12 2.8E-17 78.8 11.9 104 3-110 373-478 (626)
181 KOG0322 G-protein beta subunit 99.5 5.1E-14 1.1E-18 78.8 5.5 69 1-69 254-322 (323)
182 KOG2695 WD40 repeat protein [G 99.5 1.6E-13 3.5E-18 79.3 7.2 111 2-112 256-379 (425)
183 KOG0270 WD40 repeat-containing 99.5 3.3E-12 7.1E-17 75.7 12.7 110 1-110 289-405 (463)
184 KOG1963 WD40 repeat protein [G 99.5 2.4E-12 5.1E-17 81.2 12.7 110 1-110 208-323 (792)
185 KOG0649 WD40 repeat protein [G 99.5 1.3E-12 2.7E-17 72.8 10.2 71 42-112 116-189 (325)
186 KOG0321 WD40 repeat-containing 99.5 3.4E-13 7.3E-18 82.9 7.9 102 9-110 63-176 (720)
187 KOG1063 RNA polymerase II elon 99.4 4.7E-12 1E-16 78.7 10.7 109 1-109 575-699 (764)
188 KOG0322 G-protein beta subunit 99.4 1.5E-12 3.3E-17 73.0 7.4 107 2-108 209-322 (323)
189 KOG2111 Uncharacterized conser 99.4 7.7E-11 1.7E-15 67.7 14.2 71 1-71 184-257 (346)
190 KOG2106 Uncharacterized conser 99.4 2.8E-11 6E-16 73.3 12.6 104 2-107 411-519 (626)
191 KOG2321 WD40 repeat protein [G 99.4 4.1E-12 8.9E-17 77.7 9.2 112 1-112 178-305 (703)
192 KOG2110 Uncharacterized conser 99.4 1.8E-10 3.9E-15 67.3 14.7 70 1-70 176-248 (391)
193 KOG2919 Guanine nucleotide-bin 99.4 2.7E-11 5.8E-16 69.9 11.0 109 2-111 162-283 (406)
194 KOG0650 WD40 repeat nucleolar 99.4 3.8E-12 8.1E-17 78.2 7.9 106 1-106 610-732 (733)
195 KOG4378 Nuclear protein COP1 [ 99.4 2.5E-11 5.5E-16 73.5 11.2 111 1-111 124-241 (673)
196 KOG1188 WD40 repeat protein [G 99.4 5.7E-11 1.2E-15 68.7 10.9 109 3-111 122-244 (376)
197 KOG1587 Cytoplasmic dynein int 99.3 1.2E-11 2.7E-16 76.7 8.7 110 1-110 401-517 (555)
198 KOG2445 Nuclear pore complex c 99.3 3.1E-11 6.7E-16 69.1 9.5 106 2-108 173-317 (361)
199 KOG2139 WD40 repeat protein [G 99.3 8.8E-11 1.9E-15 68.7 11.5 107 1-109 143-268 (445)
200 COG2319 FOG: WD40 repeat [Gene 99.3 5.2E-10 1.1E-14 66.6 14.7 110 1-111 201-316 (466)
201 KOG0290 Conserved WD40 repeat- 99.3 9.8E-11 2.1E-15 66.8 10.7 104 1-105 199-361 (364)
202 KOG2315 Predicted translation 99.3 2.6E-10 5.6E-15 69.6 12.8 105 1-108 273-389 (566)
203 KOG0642 Cell-cycle nuclear pro 99.3 1E-10 2.2E-15 71.3 10.8 70 1-70 347-426 (577)
204 KOG0280 Uncharacterized conser 99.3 2.9E-10 6.2E-15 64.9 11.4 110 2-111 125-243 (339)
205 PRK11028 6-phosphogluconolacto 99.3 6.8E-10 1.5E-14 65.7 13.7 108 2-110 83-206 (330)
206 KOG1524 WD40 repeat-containing 99.3 4.3E-11 9.3E-16 73.1 8.5 105 2-108 108-215 (737)
207 KOG2139 WD40 repeat protein [G 99.3 2.6E-10 5.7E-15 66.8 11.1 98 1-98 198-299 (445)
208 KOG2321 WD40 repeat protein [G 99.3 1.9E-10 4.1E-15 70.7 10.5 108 4-111 139-260 (703)
209 PRK01742 tolB translocation pr 99.3 9.8E-10 2.1E-14 67.2 13.5 108 1-109 206-322 (429)
210 PF00400 WD40: WD domain, G-be 99.3 2.7E-11 5.8E-16 49.9 4.7 37 32-68 3-39 (39)
211 KOG4227 WD40 repeat protein [G 99.3 2.6E-10 5.7E-15 67.6 10.4 112 1-112 108-228 (609)
212 KOG1240 Protein kinase contain 99.3 4.6E-10 1E-14 74.0 12.3 107 3-109 1053-1225(1431)
213 PRK11028 6-phosphogluconolacto 99.3 1.2E-09 2.7E-14 64.6 13.4 108 2-109 178-304 (330)
214 KOG0771 Prolactin regulatory e 99.3 2.9E-10 6.3E-15 67.1 10.3 107 1-108 189-353 (398)
215 PF02239 Cytochrom_D1: Cytochr 99.3 1.4E-09 3E-14 65.3 13.4 102 11-112 6-111 (369)
216 KOG0974 WD-repeat protein WDR6 99.2 9.8E-11 2.1E-15 75.5 8.8 107 1-110 178-289 (967)
217 KOG3914 WD repeat protein WDR4 99.2 2E-10 4.3E-15 67.6 8.9 90 21-112 133-226 (390)
218 KOG1517 Guanine nucleotide bin 99.2 4.2E-10 9.1E-15 73.5 10.5 107 4-110 1171-1288(1387)
219 KOG0650 WD40 repeat nucleolar 99.2 4.8E-11 1E-15 73.5 6.0 106 1-107 569-678 (733)
220 PRK05137 tolB translocation pr 99.2 3.2E-09 6.9E-14 65.1 13.9 109 2-111 205-324 (435)
221 KOG0974 WD-repeat protein WDR6 99.2 1.1E-09 2.3E-14 70.9 11.2 102 6-109 141-246 (967)
222 PRK01742 tolB translocation pr 99.2 1.3E-09 2.8E-14 66.7 11.3 104 2-108 295-400 (429)
223 KOG4714 Nucleoporin [Nuclear s 99.2 2.1E-10 4.6E-15 64.5 6.9 107 1-107 182-316 (319)
224 KOG1517 Guanine nucleotide bin 99.2 1.6E-09 3.5E-14 70.9 11.7 100 9-109 1220-1333(1387)
225 KOG1409 Uncharacterized conser 99.2 2.7E-10 5.8E-15 66.3 7.4 71 1-71 200-271 (404)
226 PRK03629 tolB translocation pr 99.2 8.7E-09 1.9E-13 63.1 14.4 109 2-111 202-321 (429)
227 KOG1310 WD40 repeat protein [G 99.2 1.8E-10 4E-15 70.6 6.6 78 33-110 43-126 (758)
228 KOG1587 Cytoplasmic dynein int 99.1 2.4E-09 5.3E-14 66.8 11.3 91 20-110 222-324 (555)
229 PRK03629 tolB translocation pr 99.1 3.2E-08 6.9E-13 60.7 14.9 108 3-111 247-365 (429)
230 PRK04922 tolB translocation pr 99.1 1.8E-08 3.9E-13 61.8 13.4 109 2-111 207-326 (433)
231 KOG1963 WD40 repeat protein [G 99.1 6.3E-09 1.4E-13 66.4 11.5 109 3-112 165-284 (792)
232 PF02239 Cytochrom_D1: Cytochr 99.1 3.6E-08 7.8E-13 59.4 14.2 107 3-110 41-159 (369)
233 PRK02889 tolB translocation pr 99.1 3.1E-08 6.8E-13 60.7 14.0 110 2-111 243-362 (427)
234 PF11768 DUF3312: Protein of u 99.1 2.3E-09 5E-14 66.0 8.9 69 1-71 262-330 (545)
235 KOG3914 WD repeat protein WDR4 99.1 8.8E-10 1.9E-14 64.9 6.9 78 1-79 154-232 (390)
236 PRK04922 tolB translocation pr 99.1 4.4E-08 9.5E-13 60.2 14.4 108 3-111 252-370 (433)
237 PRK02889 tolB translocation pr 99.0 2E-08 4.4E-13 61.5 12.0 105 2-108 199-313 (427)
238 PRK00178 tolB translocation pr 99.0 5.6E-08 1.2E-12 59.6 13.9 109 2-111 202-321 (430)
239 PF11768 DUF3312: Protein of u 99.0 5.4E-08 1.2E-12 60.2 13.6 72 38-109 257-329 (545)
240 KOG1524 WD40 repeat-containing 99.0 6.2E-09 1.4E-13 64.0 9.5 104 1-105 148-282 (737)
241 TIGR02800 propeller_TolB tol-p 99.0 8.2E-08 1.8E-12 58.5 13.5 109 2-111 193-312 (417)
242 KOG1538 Uncharacterized conser 99.0 3.4E-08 7.4E-13 62.5 11.6 106 1-107 135-250 (1081)
243 KOG3881 Uncharacterized conser 99.0 2.2E-09 4.7E-14 63.3 6.1 80 1-80 250-330 (412)
244 PRK01029 tolB translocation pr 99.0 1.1E-07 2.3E-12 58.4 13.6 109 3-111 285-405 (428)
245 PRK04792 tolB translocation pr 99.0 1.5E-07 3.2E-12 58.2 13.6 109 2-111 221-340 (448)
246 PRK05137 tolB translocation pr 99.0 2E-07 4.3E-12 57.4 13.9 108 2-110 249-367 (435)
247 KOG1064 RAVE (regulator of V-A 98.9 3.1E-09 6.7E-14 72.7 6.1 68 37-111 2333-2400(2439)
248 TIGR02800 propeller_TolB tol-p 98.9 4.1E-07 8.9E-12 55.5 14.3 109 2-111 237-356 (417)
249 PLN02919 haloacid dehalogenase 98.9 4.2E-07 9.1E-12 61.3 15.2 109 3-111 744-890 (1057)
250 KOG4532 WD40-like repeat conta 98.9 3.4E-07 7.4E-12 52.3 12.6 111 2-112 162-285 (344)
251 KOG1240 Protein kinase contain 98.9 1.4E-07 2.9E-12 63.0 11.6 112 1-112 1198-1337(1431)
252 KOG4497 Uncharacterized conser 98.9 1.5E-08 3.3E-13 59.1 6.5 106 4-111 14-124 (447)
253 KOG0280 Uncharacterized conser 98.9 4.4E-08 9.5E-13 56.3 8.1 71 5-75 172-247 (339)
254 PRK00178 tolB translocation pr 98.9 9.2E-07 2E-11 54.4 14.4 108 3-111 247-365 (430)
255 KOG4497 Uncharacterized conser 98.8 1E-07 2.3E-12 55.8 9.5 98 2-99 52-153 (447)
256 PF00400 WD40: WD domain, G-be 98.8 7.9E-09 1.7E-13 42.3 3.8 26 1-26 14-39 (39)
257 KOG2041 WD40 repeat protein [G 98.8 7.2E-08 1.6E-12 61.6 9.4 104 2-105 18-141 (1189)
258 KOG4714 Nucleoporin [Nuclear s 98.8 8.1E-09 1.8E-13 58.4 4.8 70 40-109 179-254 (319)
259 KOG1064 RAVE (regulator of V-A 98.8 5.6E-08 1.2E-12 67.0 9.0 110 2-111 2212-2368(2439)
260 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.1E-06 2.4E-11 52.6 13.5 102 9-112 11-139 (352)
261 KOG2066 Vacuolar assembly/sort 98.8 3.3E-07 7.2E-12 58.8 11.7 100 9-111 82-189 (846)
262 PRK01029 tolB translocation pr 98.8 4.8E-07 1E-11 55.7 11.9 110 3-112 235-362 (428)
263 KOG4547 WD40 repeat-containing 98.8 4E-07 8.7E-12 56.3 11.3 107 1-109 105-220 (541)
264 KOG4547 WD40 repeat-containing 98.8 4.3E-07 9.3E-12 56.2 11.2 101 10-112 70-175 (541)
265 KOG1354 Serine/threonine prote 98.8 8.9E-08 1.9E-12 56.2 7.6 110 1-111 216-361 (433)
266 PRK04792 tolB translocation pr 98.8 2E-06 4.4E-11 53.3 13.8 108 3-111 266-384 (448)
267 KOG0644 Uncharacterized conser 98.8 4.5E-09 9.8E-14 67.5 2.4 65 2-70 236-300 (1113)
268 KOG4640 Anaphase-promoting com 98.8 1.6E-07 3.4E-12 58.8 8.7 75 2-77 24-99 (665)
269 KOG4532 WD40-like repeat conta 98.7 1.4E-06 3.1E-11 49.9 11.5 99 13-111 131-235 (344)
270 KOG1334 WD40 repeat protein [G 98.7 7.1E-08 1.5E-12 58.7 6.7 111 1-111 145-265 (559)
271 KOG1334 WD40 repeat protein [G 98.7 7.9E-08 1.7E-12 58.5 5.9 109 1-109 339-466 (559)
272 COG2706 3-carboxymuconate cycl 98.7 1.1E-05 2.4E-10 47.7 13.6 108 3-110 93-222 (346)
273 PRK04043 tolB translocation pr 98.6 1.4E-05 3E-10 49.3 14.7 108 3-111 192-311 (419)
274 KOG1354 Serine/threonine prote 98.6 7.8E-07 1.7E-11 52.5 8.3 107 1-109 167-301 (433)
275 PRK04043 tolB translocation pr 98.6 1.3E-05 2.8E-10 49.4 13.9 108 3-111 237-359 (419)
276 COG4946 Uncharacterized protei 98.6 4.1E-06 9E-11 51.5 11.4 97 1-97 404-506 (668)
277 COG4946 Uncharacterized protei 98.6 1.5E-05 3.3E-10 49.2 13.3 106 5-111 366-479 (668)
278 KOG2315 Predicted translation 98.6 9.3E-06 2E-10 50.5 12.5 89 21-111 252-346 (566)
279 PF15492 Nbas_N: Neuroblastoma 98.6 1.9E-05 4.1E-10 45.5 13.7 28 83-110 233-260 (282)
280 PLN02919 haloacid dehalogenase 98.6 2.2E-05 4.7E-10 53.5 14.8 108 3-111 687-835 (1057)
281 COG5354 Uncharacterized protei 98.5 5.8E-06 1.3E-10 51.0 11.0 106 1-109 277-395 (561)
282 KOG1832 HIV-1 Vpr-binding prot 98.5 2.2E-07 4.8E-12 60.8 5.0 109 2-111 1105-1216(1516)
283 KOG1645 RING-finger-containing 98.5 1.1E-06 2.4E-11 52.7 7.1 91 22-112 175-269 (463)
284 TIGR02658 TTQ_MADH_Hv methylam 98.5 4.1E-05 9E-10 46.1 13.4 77 6-82 53-148 (352)
285 KOG1409 Uncharacterized conser 98.5 2.7E-06 5.9E-11 50.2 8.2 79 32-110 189-271 (404)
286 KOG2314 Translation initiation 98.5 6.5E-06 1.4E-10 51.5 9.9 104 2-109 214-334 (698)
287 smart00320 WD40 WD40 repeats. 98.5 1.1E-06 2.4E-11 34.7 4.9 36 33-68 5-40 (40)
288 KOG1912 WD40 repeat protein [G 98.5 5.8E-06 1.3E-10 53.6 9.8 108 3-112 20-146 (1062)
289 PF14783 BBS2_Mid: Ciliary BBS 98.4 1.9E-05 4.2E-10 39.6 13.7 99 1-105 2-110 (111)
290 KOG1275 PAB-dependent poly(A) 98.4 2.9E-06 6.4E-11 55.6 8.2 98 8-107 185-340 (1118)
291 KOG3621 WD40 repeat-containing 98.4 3.2E-06 6.9E-11 53.8 8.1 105 4-109 39-154 (726)
292 KOG0309 Conserved WD40 repeat- 98.4 1.9E-06 4.1E-11 55.5 6.8 110 1-110 117-233 (1081)
293 PF10282 Lactonase: Lactonase, 98.4 8.4E-05 1.8E-09 44.8 15.2 107 3-109 91-222 (345)
294 PF13360 PQQ_2: PQQ-like domai 98.4 6.4E-05 1.4E-09 42.6 12.4 102 9-112 121-233 (238)
295 KOG1645 RING-finger-containing 98.4 3.2E-06 7E-11 50.8 6.6 72 1-73 196-269 (463)
296 PF10282 Lactonase: Lactonase, 98.3 0.00013 2.9E-09 43.9 14.5 109 2-110 40-175 (345)
297 KOG1275 PAB-dependent poly(A) 98.3 1E-05 2.3E-10 53.2 8.8 101 9-111 146-256 (1118)
298 KOG4190 Uncharacterized conser 98.3 2.3E-06 5.1E-11 53.7 5.8 101 9-111 746-861 (1034)
299 COG5170 CDC55 Serine/threonine 98.3 5.7E-06 1.2E-10 48.5 6.6 109 1-111 175-311 (460)
300 TIGR03300 assembly_YfgL outer 98.3 0.00014 3E-09 44.2 12.7 102 9-112 64-166 (377)
301 KOG4640 Anaphase-promoting com 98.3 1.6E-05 3.6E-10 50.3 8.5 71 40-111 20-94 (665)
302 PF13360 PQQ_2: PQQ-like domai 98.2 3.2E-05 6.8E-10 43.8 8.9 102 9-112 35-143 (238)
303 KOG3617 WD40 and TPR repeat-co 98.2 3.7E-06 8.1E-11 55.1 5.4 103 3-109 20-131 (1416)
304 KOG0309 Conserved WD40 repeat- 98.2 1.3E-05 2.8E-10 51.9 7.6 109 3-111 72-190 (1081)
305 KOG2695 WD40 repeat protein [G 98.2 8E-06 1.7E-10 48.4 5.7 73 9-81 310-387 (425)
306 TIGR03300 assembly_YfgL outer 98.2 0.00013 2.7E-09 44.4 10.8 96 9-106 278-376 (377)
307 COG2706 3-carboxymuconate cycl 98.2 0.00035 7.5E-09 41.7 13.4 106 2-108 148-273 (346)
308 PRK02888 nitrous-oxide reducta 98.2 0.00041 9E-09 44.7 12.9 90 20-110 296-405 (635)
309 PF04762 IKI3: IKI3 family; I 98.1 5.5E-05 1.2E-09 50.9 9.2 105 3-110 214-334 (928)
310 PF12894 Apc4_WD40: Anaphase-p 98.1 2.1E-05 4.6E-10 33.4 4.6 27 1-27 14-40 (47)
311 KOG0882 Cyclophilin-related pe 98.1 5.5E-05 1.2E-09 46.5 7.5 75 38-112 142-234 (558)
312 KOG2079 Vacuolar assembly/sort 98.1 6.7E-05 1.5E-09 50.4 8.4 94 9-102 98-198 (1206)
313 smart00320 WD40 WD40 repeats. 98.0 1.4E-05 3E-10 31.3 3.5 26 1-26 15-40 (40)
314 KOG2314 Translation initiation 97.9 0.00046 1E-08 43.7 9.8 107 1-109 448-573 (698)
315 COG5354 Uncharacterized protei 97.9 0.00093 2E-08 41.8 10.5 106 3-109 227-348 (561)
316 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0012 2.7E-08 38.3 11.6 100 10-111 23-125 (354)
317 COG5170 CDC55 Serine/threonine 97.9 0.00025 5.4E-09 42.0 7.7 72 1-72 29-119 (460)
318 PF12894 Apc4_WD40: Anaphase-p 97.9 0.00016 3.4E-09 30.8 5.2 30 40-69 11-40 (47)
319 KOG4190 Uncharacterized conser 97.8 8.2E-05 1.8E-09 47.1 5.9 108 3-112 789-909 (1034)
320 KOG3617 WD40 and TPR repeat-co 97.8 1.8E-05 3.9E-10 52.2 3.1 70 1-70 62-131 (1416)
321 KOG2079 Vacuolar assembly/sort 97.8 0.00017 3.7E-09 48.6 7.5 63 1-63 133-198 (1206)
322 PF08450 SGL: SMP-30/Gluconola 97.8 0.0017 3.6E-08 37.3 14.2 106 2-109 89-213 (246)
323 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0018 4E-08 37.6 11.4 72 9-80 62-133 (354)
324 KOG2066 Vacuolar assembly/sort 97.8 0.0006 1.3E-08 44.7 8.9 90 9-107 48-144 (846)
325 KOG3621 WD40 repeat-containing 97.8 0.00023 5.1E-09 45.9 7.0 69 3-71 81-155 (726)
326 KOG1912 WD40 repeat protein [G 97.7 0.0021 4.6E-08 42.5 10.3 96 12-107 81-184 (1062)
327 PF08596 Lgl_C: Lethal giant l 97.7 0.004 8.7E-08 38.5 11.2 108 1-109 4-173 (395)
328 KOG1008 Uncharacterized conser 97.6 7E-06 1.5E-10 52.1 -0.8 105 2-107 106-223 (783)
329 KOG1920 IkappaB kinase complex 97.6 0.0017 3.6E-08 44.6 9.7 107 3-110 200-323 (1265)
330 PRK11138 outer membrane biogen 97.6 0.0038 8.2E-08 38.4 10.7 96 11-108 295-393 (394)
331 KOG2041 WD40 repeat protein [G 97.6 0.00016 3.5E-09 47.1 4.7 108 2-109 75-186 (1189)
332 PRK11138 outer membrane biogen 97.6 0.0056 1.2E-07 37.7 11.2 104 9-112 68-181 (394)
333 PRK13616 lipoprotein LpqB; Pro 97.6 0.0056 1.2E-07 39.8 11.2 102 2-105 353-472 (591)
334 PF05096 Glu_cyclase_2: Glutam 97.6 0.0042 9.1E-08 36.2 13.3 108 3-111 49-159 (264)
335 PF08450 SGL: SMP-30/Gluconola 97.6 0.0041 8.8E-08 35.7 13.3 95 2-97 137-243 (246)
336 PF04053 Coatomer_WDAD: Coatom 97.6 0.0067 1.5E-07 38.1 11.1 55 52-108 117-172 (443)
337 KOG2114 Vacuolar assembly/sort 97.5 0.0025 5.5E-08 42.4 9.1 102 4-106 29-152 (933)
338 PF08553 VID27: VID27 cytoplas 97.5 0.00092 2E-08 44.4 7.1 63 3-68 582-645 (794)
339 PF00780 CNH: CNH domain; Int 97.5 0.0066 1.4E-07 35.4 11.6 101 7-110 4-123 (275)
340 KOG2444 WD40 repeat protein [G 97.4 0.0021 4.5E-08 36.5 6.9 101 10-110 70-178 (238)
341 COG0823 TolB Periplasmic compo 97.4 0.011 2.3E-07 37.1 10.5 105 4-109 243-358 (425)
342 KOG0882 Cyclophilin-related pe 97.4 0.0038 8.3E-08 38.9 8.3 110 1-111 147-307 (558)
343 PF15492 Nbas_N: Neuroblastoma 97.4 0.0083 1.8E-07 35.1 9.8 40 39-78 228-267 (282)
344 KOG1920 IkappaB kinase complex 97.4 0.022 4.8E-07 39.6 12.5 67 1-68 71-137 (1265)
345 COG3391 Uncharacterized conser 97.4 0.012 2.6E-07 36.3 13.9 108 3-111 120-241 (381)
346 PF08553 VID27: VID27 cytoplas 97.4 0.0096 2.1E-07 39.9 10.3 96 11-108 543-646 (794)
347 PF04053 Coatomer_WDAD: Coatom 97.3 0.015 3.3E-07 36.6 11.4 101 2-112 36-137 (443)
348 PF07433 DUF1513: Protein of u 97.3 0.012 2.6E-07 35.1 11.3 55 4-58 56-116 (305)
349 KOG1008 Uncharacterized conser 97.3 7.8E-05 1.7E-09 47.7 0.4 109 2-110 60-185 (783)
350 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.015 3.3E-07 36.3 9.7 78 2-79 311-407 (415)
351 PRK02888 nitrous-oxide reducta 97.2 0.03 6.4E-07 36.7 11.7 50 62-111 296-353 (635)
352 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.0058 1.2E-07 37.2 7.1 98 7-106 1-128 (353)
353 PF10168 Nup88: Nuclear pore c 97.1 0.021 4.6E-07 38.1 9.9 71 1-72 87-181 (717)
354 PF07433 DUF1513: Protein of u 96.9 0.034 7.4E-07 33.3 11.7 95 3-97 9-116 (305)
355 PF04762 IKI3: IKI3 family; I 96.9 0.071 1.5E-06 36.9 13.4 67 40-106 75-147 (928)
356 PF10313 DUF2415: Uncharacteri 96.9 0.0072 1.6E-07 25.1 4.8 31 41-71 1-34 (43)
357 cd00216 PQQ_DH Dehydrogenases 96.9 0.051 1.1E-06 34.7 10.4 102 10-112 61-186 (488)
358 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.023 4.9E-07 28.8 9.3 64 43-108 2-70 (111)
359 COG3386 Gluconolactonase [Carb 96.7 0.052 1.1E-06 32.7 11.4 97 2-99 166-275 (307)
360 COG3204 Uncharacterized protei 96.7 0.05 1.1E-06 32.4 11.1 108 1-108 88-209 (316)
361 PF02897 Peptidase_S9_N: Proly 96.6 0.071 1.5E-06 33.2 11.7 106 3-110 128-261 (414)
362 PF06433 Me-amine-dh_H: Methyl 96.6 0.07 1.5E-06 32.5 12.9 107 3-109 40-165 (342)
363 cd00216 PQQ_DH Dehydrogenases 96.6 0.089 1.9E-06 33.7 12.2 102 11-112 111-267 (488)
364 PF06977 SdiA-regulated: SdiA- 96.5 0.064 1.4E-06 31.3 12.6 108 1-109 24-147 (248)
365 COG0823 TolB Periplasmic compo 96.5 0.1 2.2E-06 32.9 10.8 102 4-106 198-309 (425)
366 KOG2395 Protein involved in va 96.5 0.014 3.1E-07 37.2 5.5 58 9-68 440-498 (644)
367 KOG1832 HIV-1 Vpr-binding prot 96.5 0.0076 1.6E-07 40.9 4.5 78 32-109 1093-1175(1516)
368 PF07569 Hira: TUP1-like enhan 96.3 0.085 1.9E-06 30.2 7.8 66 6-72 18-97 (219)
369 PF06433 Me-amine-dh_H: Methyl 96.3 0.098 2.1E-06 31.9 8.0 76 4-80 243-330 (342)
370 PRK13616 lipoprotein LpqB; Pro 96.2 0.18 3.9E-06 33.3 10.8 100 3-107 401-523 (591)
371 KOG2444 WD40 repeat protein [G 96.2 0.021 4.6E-07 32.6 4.8 63 9-71 113-178 (238)
372 COG3391 Uncharacterized conser 96.1 0.16 3.5E-06 31.5 14.0 107 3-110 78-191 (381)
373 PF11715 Nup160: Nucleoporin N 96.0 0.19 4.1E-06 32.6 9.0 71 8-78 156-256 (547)
374 PF12234 Rav1p_C: RAVE protein 96.0 0.25 5.4E-06 32.8 11.9 92 14-107 45-154 (631)
375 PF03178 CPSF_A: CPSF A subuni 95.9 0.18 3.8E-06 30.4 12.1 95 12-109 100-202 (321)
376 PHA02713 hypothetical protein; 95.9 0.11 2.3E-06 34.0 7.5 61 51-111 463-535 (557)
377 KOG4460 Nuclear pore complex, 95.9 0.26 5.7E-06 32.1 8.8 26 2-27 107-132 (741)
378 PF10313 DUF2415: Uncharacteri 95.7 0.051 1.1E-06 22.6 5.0 29 1-29 3-34 (43)
379 PF15390 DUF4613: Domain of un 95.7 0.34 7.4E-06 31.9 10.9 108 1-108 59-185 (671)
380 KOG2395 Protein involved in va 95.7 0.26 5.7E-06 32.0 8.2 92 14-107 398-498 (644)
381 PF07569 Hira: TUP1-like enhan 95.6 0.054 1.2E-06 30.9 5.0 27 48-74 18-44 (219)
382 COG3823 Glutamine cyclotransfe 95.4 0.25 5.4E-06 28.3 7.0 101 9-109 55-158 (262)
383 KOG2114 Vacuolar assembly/sort 95.3 0.56 1.2E-05 32.2 11.9 94 1-96 174-270 (933)
384 PF06977 SdiA-regulated: SdiA- 95.2 0.33 7.1E-06 28.4 11.3 95 2-97 121-239 (248)
385 KOG4499 Ca2+-binding protein R 95.1 0.34 7.3E-06 28.3 10.4 96 2-97 161-272 (310)
386 COG3490 Uncharacterized protei 95.1 0.4 8.6E-06 28.9 9.8 55 5-59 120-180 (366)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 94.9 0.54 1.2E-05 29.7 9.8 75 38-112 305-401 (415)
388 PF14870 PSII_BNR: Photosynthe 94.9 0.46 1E-05 28.7 11.7 65 2-68 148-213 (302)
389 PF04841 Vps16_N: Vps16, N-ter 94.9 0.56 1.2E-05 29.6 12.4 39 40-78 216-254 (410)
390 PF14583 Pectate_lyase22: Olig 94.7 0.27 5.9E-06 30.6 6.2 76 5-80 42-120 (386)
391 COG5167 VID27 Protein involved 94.6 0.2 4.3E-06 32.5 5.5 61 9-70 572-632 (776)
392 KOG4441 Proteins containing BT 94.2 1 2.2E-05 29.8 8.8 99 10-110 285-405 (571)
393 PF14269 Arylsulfotran_2: Aryl 94.2 0.72 1.6E-05 27.8 7.2 66 43-108 146-219 (299)
394 PRK10115 protease 2; Provision 94.1 1.2 2.6E-05 30.2 12.6 105 2-108 130-254 (686)
395 TIGR03074 PQQ_membr_DH membran 94.0 1.4 2.9E-05 30.4 12.8 103 10-112 194-347 (764)
396 PF11715 Nup160: Nucleoporin N 93.9 0.23 4.9E-06 32.3 5.0 27 9-35 229-255 (547)
397 PF05694 SBP56: 56kDa selenium 93.8 1.1 2.3E-05 28.7 8.6 93 19-111 221-344 (461)
398 KOG3630 Nuclear pore complex, 93.8 0.31 6.7E-06 34.5 5.5 68 3-70 160-228 (1405)
399 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 1.2 2.6E-05 29.2 10.9 101 10-112 69-192 (527)
400 PF12657 TFIIIC_delta: Transcr 93.7 0.63 1.4E-05 25.6 8.4 24 2-27 8-31 (173)
401 TIGR02276 beta_rpt_yvtn 40-res 93.6 0.22 4.8E-06 20.0 5.3 30 8-37 1-31 (42)
402 PHA02713 hypothetical protein; 93.3 1.5 3.3E-05 28.9 9.8 50 51-100 351-408 (557)
403 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.3 1.5 3.3E-05 28.7 10.6 61 20-81 441-501 (527)
404 KOG1916 Nuclear protein, conta 93.1 0.13 2.8E-06 35.5 3.0 61 9-70 194-265 (1283)
405 KOG3630 Nuclear pore complex, 93.0 0.56 1.2E-05 33.4 5.8 55 1-56 201-259 (1405)
406 PF00930 DPPIV_N: Dipeptidyl p 93.0 0.29 6.2E-06 30.0 4.3 65 2-67 46-128 (353)
407 smart00564 PQQ beta-propeller 92.9 0.25 5.4E-06 18.7 3.2 20 93-112 8-27 (33)
408 KOG4499 Ca2+-binding protein R 92.7 1.2 2.6E-05 26.2 7.1 47 4-50 217-263 (310)
409 PF15390 DUF4613: Domain of un 92.7 2 4.4E-05 28.6 7.6 67 4-70 118-186 (671)
410 PF03178 CPSF_A: CPSF A subuni 92.5 1.5 3.2E-05 26.5 10.9 97 10-109 42-157 (321)
411 PF01011 PQQ: PQQ enzyme repea 92.2 0.39 8.3E-06 19.1 3.1 19 94-112 3-21 (38)
412 KOG3616 Selective LIM binding 92.2 0.74 1.6E-05 31.7 5.4 66 39-106 13-80 (1636)
413 PF00780 CNH: CNH domain; Int 92.0 1.5 3.3E-05 25.7 12.4 108 2-111 39-167 (275)
414 PF08596 Lgl_C: Lethal giant l 92.0 2.1 4.5E-05 27.1 8.5 87 12-99 228-326 (395)
415 KOG2377 Uncharacterized conser 91.8 2.4 5.2E-05 27.5 8.7 92 1-94 69-168 (657)
416 PF01731 Arylesterase: Arylest 91.7 0.87 1.9E-05 22.1 5.5 48 63-110 37-85 (86)
417 KOG4441 Proteins containing BT 91.5 2.9 6.3E-05 27.8 9.3 102 9-111 380-501 (571)
418 PHA03098 kelch-like protein; P 91.4 2.8 6E-05 27.4 9.4 61 51-111 437-513 (534)
419 PF10647 Gmad1: Lipoprotein Lp 91.3 1.9 4.1E-05 25.4 11.9 103 2-105 27-140 (253)
420 PHA03098 kelch-like protein; P 91.3 2.8 6.1E-05 27.4 9.6 61 51-111 389-466 (534)
421 PF01436 NHL: NHL repeat; Int 91.3 0.41 8.8E-06 17.7 3.8 23 3-25 6-28 (28)
422 COG5276 Uncharacterized conser 91.1 2.3 4.9E-05 26.0 12.6 100 10-111 96-201 (370)
423 COG5167 VID27 Protein involved 91.1 3.1 6.8E-05 27.5 8.2 58 51-109 572-632 (776)
424 COG3386 Gluconolactonase [Carb 91.1 2.3 5E-05 25.9 11.9 107 3-109 115-243 (307)
425 PF10168 Nup88: Nuclear pore c 91.1 1.5 3.2E-05 30.0 6.0 32 1-32 149-183 (717)
426 KOG2377 Uncharacterized conser 90.9 3.1 6.6E-05 27.1 11.1 63 9-71 32-97 (657)
427 PF14781 BBS2_N: Ciliary BBSom 90.7 1.5 3.3E-05 23.2 12.0 104 2-107 2-123 (136)
428 PF14761 HPS3_N: Hermansky-Pud 90.7 2.1 4.5E-05 24.7 6.7 49 11-60 29-79 (215)
429 PF13570 PQQ_3: PQQ-like domai 90.6 0.64 1.4E-05 18.6 3.2 21 90-110 20-40 (40)
430 COG3490 Uncharacterized protei 90.5 2.6 5.7E-05 25.6 10.3 96 3-98 72-180 (366)
431 PF04841 Vps16_N: Vps16, N-ter 90.4 3.2 6.9E-05 26.3 11.8 50 1-50 219-269 (410)
432 PHA02790 Kelch-like protein; P 89.7 4 8.6E-05 26.5 9.7 58 51-111 407-472 (480)
433 PF14583 Pectate_lyase22: Olig 89.7 3.6 7.8E-05 26.0 11.6 103 5-109 244-381 (386)
434 TIGR03118 PEPCTERM_chp_1 conse 89.3 3.5 7.6E-05 25.3 10.7 106 3-108 27-169 (336)
435 PF14779 BBS1: Ciliary BBSome 89.1 3.3 7.1E-05 24.6 6.1 66 41-106 177-255 (257)
436 PF08728 CRT10: CRT10; InterP 89.0 5.7 0.00012 27.3 12.5 100 9-108 113-245 (717)
437 PF03088 Str_synth: Strictosid 88.8 1.8 3.9E-05 21.2 7.5 39 19-58 36-74 (89)
438 COG1520 FOG: WD40-like repeat 88.8 4.1 8.8E-05 25.3 11.0 70 12-82 70-141 (370)
439 PF14727 PHTB1_N: PTHB1 N-term 88.7 4.6 9.9E-05 25.9 12.3 100 10-109 37-163 (418)
440 PF02897 Peptidase_S9_N: Proly 88.5 4.5 9.7E-05 25.4 8.9 56 44-99 127-189 (414)
441 PF07995 GSDH: Glucose / Sorbo 87.7 4.7 0.0001 24.8 9.1 48 2-51 5-59 (331)
442 PF14269 Arylsulfotran_2: Aryl 86.9 5.1 0.00011 24.3 7.0 39 1-39 146-184 (299)
443 COG3204 Uncharacterized protei 86.8 5.2 0.00011 24.4 7.7 70 38-107 83-156 (316)
444 KOG2247 WD40 repeat-containing 86.8 0.048 1E-06 34.8 -2.6 105 3-109 39-147 (615)
445 PF08728 CRT10: CRT10; InterP 86.7 8.3 0.00018 26.6 7.4 67 3-69 168-245 (717)
446 PF10214 Rrn6: RNA polymerase 86.3 9 0.0002 26.6 13.5 72 2-74 149-236 (765)
447 PF12657 TFIIIC_delta: Transcr 85.4 2.3 5.1E-05 23.4 3.7 28 1-28 88-121 (173)
448 PRK13684 Ycf48-like protein; P 85.3 6.7 0.00014 24.2 10.8 62 2-66 176-239 (334)
449 PF10214 Rrn6: RNA polymerase 84.6 11 0.00024 26.2 7.2 71 40-111 145-234 (765)
450 KOG1897 Damage-specific DNA bi 83.7 14 0.0003 26.6 10.4 102 3-107 779-896 (1096)
451 PHA02790 Kelch-like protein; P 83.4 10 0.00022 24.7 9.7 61 51-111 318-386 (480)
452 KOG1900 Nuclear pore complex, 83.0 9.1 0.0002 28.2 6.2 34 38-71 240-273 (1311)
453 KOG3616 Selective LIM binding 82.9 6.2 0.00013 27.7 5.3 30 2-31 18-47 (1636)
454 COG4257 Vgb Streptogramin lyas 82.8 8.6 0.00019 23.5 9.8 95 3-98 66-166 (353)
455 TIGR02604 Piru_Ver_Nterm putat 82.5 9.5 0.00021 23.8 11.7 95 2-98 17-142 (367)
456 PRK10115 protease 2; Provision 81.9 14 0.00031 25.4 7.7 70 42-111 128-209 (686)
457 COG4590 ABC-type uncharacteriz 81.1 13 0.00028 24.5 9.0 102 9-111 279-388 (733)
458 TIGR03074 PQQ_membr_DH membran 79.9 18 0.00039 25.4 8.9 75 20-94 641-739 (764)
459 PF07995 GSDH: Glucose / Sorbo 79.6 12 0.00026 23.1 7.0 56 10-65 271-330 (331)
460 PF05096 Glu_cyclase_2: Glutam 79.3 11 0.00024 22.6 9.7 58 18-78 108-165 (264)
461 KOG1897 Damage-specific DNA bi 79.0 22 0.00047 25.8 12.6 98 10-108 499-612 (1096)
462 PF08309 LVIVD: LVIVD repeat; 78.5 3.9 8.5E-05 16.9 4.8 25 87-111 7-31 (42)
463 PF07676 PD40: WD40-like Beta 78.2 3.5 7.6E-05 16.2 5.2 19 40-58 8-26 (39)
464 PF10647 Gmad1: Lipoprotein Lp 76.7 13 0.00028 22.0 11.7 62 1-62 114-187 (253)
465 KOG1916 Nuclear protein, conta 76.6 8.1 0.00017 27.6 4.4 23 6-28 243-265 (1283)
466 smart00036 CNH Domain found in 75.9 15 0.00033 22.3 8.3 59 10-70 13-73 (302)
467 TIGR02171 Fb_sc_TIGR02171 Fibr 75.7 19 0.00041 25.8 5.9 53 3-55 354-413 (912)
468 KOG1983 Tomosyn and related SN 74.5 28 0.0006 25.4 6.5 26 3-28 40-65 (993)
469 PF11635 Med16: Mediator compl 72.0 31 0.00067 24.2 6.2 64 2-65 263-345 (753)
470 TIGR03054 photo_alph_chp1 puta 71.5 14 0.0003 19.8 5.8 65 12-76 43-119 (135)
471 TIGR03606 non_repeat_PQQ dehyd 71.3 26 0.00057 23.0 13.1 100 2-101 33-167 (454)
472 TIGR02604 Piru_Ver_Nterm putat 71.2 23 0.00049 22.2 10.7 19 41-59 124-142 (367)
473 PF14761 HPS3_N: Hermansky-Pud 70.8 18 0.0004 21.0 6.3 47 53-99 29-79 (215)
474 KOG2247 WD40 repeat-containing 70.4 5.5 0.00012 26.2 2.5 52 4-55 123-174 (615)
475 KOG2727 Rab3 GTPase-activating 70.3 6.3 0.00014 28.1 2.8 77 3-79 326-415 (1244)
476 KOG2103 Uncharacterized conser 68.4 40 0.00087 24.0 6.8 68 42-111 37-105 (910)
477 PF10584 Proteasome_A_N: Prote 67.4 2.2 4.7E-05 15.2 0.2 8 5-12 7-14 (23)
478 PF12341 DUF3639: Protein of u 67.1 6.7 0.00015 14.5 3.7 24 42-67 3-26 (27)
479 PF12768 Rax2: Cortical protei 67.0 26 0.00056 21.3 8.2 55 19-73 15-75 (281)
480 PF14781 BBS2_N: Ciliary BBSom 64.7 20 0.00044 19.2 9.0 64 47-111 5-83 (136)
481 COG5308 NUP170 Nuclear pore co 64.5 51 0.0011 24.1 6.0 26 81-108 183-208 (1263)
482 KOG4460 Nuclear pore complex, 64.5 15 0.00032 24.7 3.5 31 2-32 169-202 (741)
483 TIGR03118 PEPCTERM_chp_1 conse 64.3 32 0.0007 21.4 8.2 65 44-108 26-117 (336)
484 KOG3522 Predicted guanine nucl 62.5 49 0.0011 23.7 5.6 57 13-70 638-697 (925)
485 TIGR02171 Fb_sc_TIGR02171 Fibr 62.3 58 0.0013 23.6 9.5 53 19-72 328-387 (912)
486 PF05787 DUF839: Bacterial pro 61.5 47 0.001 22.3 6.0 13 4-16 441-453 (524)
487 TIGR03548 mutarot_permut cycli 61.3 35 0.00076 20.8 10.2 23 51-73 171-197 (323)
488 KOG2467 Glycine/serine hydroxy 60.1 10 0.00022 24.2 2.2 21 91-111 341-361 (477)
489 PF06739 SBBP: Beta-propeller 59.0 12 0.00027 14.9 2.7 19 2-20 16-34 (38)
490 PRK14751 tetracycline resistan 58.0 9 0.00019 13.9 1.1 10 99-108 13-22 (28)
491 PF08801 Nucleoporin_N: Nup133 57.9 18 0.0004 23.0 3.2 28 2-29 193-220 (422)
492 PF07250 Glyoxal_oxid_N: Glyox 57.8 38 0.00083 20.2 8.4 104 5-110 73-198 (243)
493 PLN02153 epithiospecifier prot 57.0 44 0.00096 20.6 11.2 23 51-73 137-170 (341)
494 KOG2109 WD40 repeat protein [G 56.3 28 0.00061 24.1 3.8 48 22-69 297-345 (788)
495 KOG1983 Tomosyn and related SN 55.6 82 0.0018 23.3 6.1 26 49-74 243-268 (993)
496 PF12234 Rav1p_C: RAVE protein 54.5 71 0.0015 22.2 9.3 59 49-107 38-102 (631)
497 KOG2280 Vacuolar assembly/sort 54.5 76 0.0017 22.6 6.2 39 41-79 217-255 (829)
498 PF13418 Kelch_4: Galactose ox 54.4 17 0.00036 15.0 2.3 8 103-110 31-38 (49)
499 PF08801 Nucleoporin_N: Nup133 54.2 33 0.00071 22.0 3.8 32 41-72 190-221 (422)
500 PF05694 SBP56: 56kDa selenium 52.9 65 0.0014 21.3 7.6 34 1-34 314-348 (461)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-28 Score=138.15 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=99.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce----E
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV----H 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~----~ 76 (112)
|.|++|+|+|..|++|+.|.++++||+.+..+..++++|..-|.|++|+|||+.+++|+.||.|++||.++++.+ .
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~ 197 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR 197 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999887654 3
Q ss_pred EecCCCeEEEEee-----CCCEEEEEeCCCcEEEEECcCC
Q 045566 77 TQQLPDRCYALTV-----RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 77 ~~~~~~~~~~~~~-----~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+...+.+++|.| ..+.+++++.||.++|||+.-+
T Consensus 198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred CcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 4455667788876 4568999999999999998754
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.3e-28 Score=141.33 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=103.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|+++|.++++|+.|..-++||+++++++..+..
T Consensus 264 Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 264 VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred heeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 46789999999999999999999999999999888899999999999999999999999999999999999999987766
Q ss_pred C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+ +..+.|+|+|..+++|+.|++++|||+|.-
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 4 468899999999999999999999999863
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=6.3e-27 Score=143.08 Aligned_cols=111 Identities=22% Similarity=0.400 Sum_probs=102.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-- 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-- 78 (112)
|.|+.|+|+..++++|+.|.+|++||..++...+.+.+|.++|++++|+|+|.++++|+.|+.|.+||+.+++.+..+
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999998766444
Q ss_pred -cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 -QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
...+.++.|+.+|..|++++.|..|++||+...
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 445678999999999999999999999998753
No 4
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=135.36 Aligned_cols=112 Identities=29% Similarity=0.425 Sum_probs=101.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.+++|+|+++++++++.|+++++||+.. +..+.++.+|...|++++|+|+++.+++|+.|+.|++||++++++...+.
T Consensus 206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred eeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence 57899999999999999999999999944 46778889999999999999999999999999999999999988776665
Q ss_pred C---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 80 L---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 80 ~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
. .+..++|.+++..+++++.|+.|++||+.+++
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 4 45788899999999999999999999998864
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=130.33 Aligned_cols=111 Identities=26% Similarity=0.332 Sum_probs=101.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.+++|.|+|..+++|+.|..-++||++++..+..+.+|..+|..++|+|+|.++++|+.|+++++||++..+.+..+..
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998887776665
Q ss_pred C---CeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566 81 P---DRCYALTV-RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~---~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+ +..+.|.| .|.+|++++.|+.+++|..++.
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 4 35788998 6889999999999999987654
No 6
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2e-24 Score=131.38 Aligned_cols=112 Identities=17% Similarity=0.324 Sum_probs=97.5
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCC-------CcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~ 71 (112)
|.+++|+| ++++|++|+.|+.|++||+.+.. ++..+.+|...|.+++|+|++ .++++++.|+.|++||+++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 57899999 88999999999999999987642 456778899999999999965 6899999999999999998
Q ss_pred CCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 72 PNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 72 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
++.+..+.. .+..++|++++..+++++.|+.|++||+++++
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 877666543 45788999999999999999999999999764
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=3.9e-25 Score=135.36 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=104.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.++.|+|-|-++|+++.|++-++|......+++.+.+|.+.|.|+.|+|+..++++|+.|+++++||+.++..++.+.+
T Consensus 496 VwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 496 VWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred eeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999988877654
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
++.+++|+|+|.+|++|+.|+.|.+||+.+++
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 56899999999999999999999999998763
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-24 Score=120.16 Aligned_cols=112 Identities=25% Similarity=0.414 Sum_probs=99.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|..+..+++|++.++++.|+.+++||+.+++..+.+.+|...|.+++|+++.+++++|+.|++|++|+............
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~ 145 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED 145 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999877655443333
Q ss_pred C----CeEEEEeeC--CCEEEEEeCCCcEEEEECcCCC
Q 045566 81 P----DRCYALTVR--YPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ~----~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
. +.+++|+|+ ..++++++.|+.|++||+++.+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 2 478999998 6899999999999999998753
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-24 Score=120.05 Aligned_cols=110 Identities=19% Similarity=0.319 Sum_probs=97.7
Q ss_pred CeeEEEcCC--CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDD--GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|+|++|+|+ ...+++++.|++|++||+++-+....+.+|...++.++++|||...++|+.|+.+.+||++.++.+..+
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 689999996 789999999999999999998888899999999999999999999999999999999999999998777
Q ss_pred cC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.. .+.+++|+|+...|+.+. +..|+|||+.++
T Consensus 231 ~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK 264 (315)
T ss_pred cCCCeEeeEEecCCceeEeecc-CCceEEEeccch
Confidence 65 457899999976666554 445999999865
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=5e-25 Score=127.45 Aligned_cols=111 Identities=20% Similarity=0.346 Sum_probs=101.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.+++|+|+...+++|++|+.++|||....+....+.+|...|.+++|+|...++++++.|..|++||.+++.++.++..
T Consensus 183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred hheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence 57899999999999999999999999998888888999999999999999999999999999999999999998866543
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+..+.|.+++++|++++.|..++++|+|+.
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM 296 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHh
Confidence 4567789999999999999999999999854
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=127.73 Aligned_cols=111 Identities=23% Similarity=0.428 Sum_probs=100.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~ 78 (112)
|++++|+|+++.+++|+.|++|++||++++++...+..|.+.|++++|++++..+++++.|+.+++||+.++.. ....
T Consensus 249 v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 328 (456)
T KOG0266|consen 249 VTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL 328 (456)
T ss_pred eEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999883 3333
Q ss_pred c---C--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 Q---L--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~---~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. . ....+.|+|++.+++++..|+.+++||++.+
T Consensus 329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 2 2 3577889999999999999999999999865
No 12
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=5.1e-23 Score=126.49 Aligned_cols=112 Identities=12% Similarity=0.271 Sum_probs=94.4
Q ss_pred CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCC--------CcEEEeeccCCeeEEEEccCCCE-EEEeeCCCcEEEeeCC
Q 045566 1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGG--------QPVTVAMHDAPIKEVAWIPEMNL-LATGSWDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~~w~~~ 70 (112)
|.+++|+|+ +.+|++|+.|+.|++|++.+.. +...+.+|...|.+++|+|++.. +++++.|+.|++||++
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 578999996 7899999999999999997542 23356789999999999998775 5788999999999999
Q ss_pred CCCceEEec--CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 71 QPNPVHTQQ--LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 71 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+++.+..+. ..+.++.|+++|.++++++.|+.|++||+++++
T Consensus 157 tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 157 NEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 887665443 346788999999999999999999999999864
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=7.7e-24 Score=121.33 Aligned_cols=111 Identities=21% Similarity=0.338 Sum_probs=103.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.|+++.|.+.+|++|+.|+++.|||+.+++...++.+|...|..+++++...++++++.|+.|+.||+...+.++.+..
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhG 233 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHG 233 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999988877665
Q ss_pred C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+ +.++.++|.-..+++|+.|..+++||+|+.
T Consensus 234 HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 234 HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred ccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 4 567888999999999999999999999974
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.91 E-value=6.7e-23 Score=114.67 Aligned_cols=111 Identities=29% Similarity=0.411 Sum_probs=102.5
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.+++++| +++.+++|+-|+..++||++.+...+++.+|+..|+++.|.|+|.-|++|+.|++.++||++..+.+..+.
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 46789999 99999999999999999999999999999999999999999999999999999999999999988777664
Q ss_pred C-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 L-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. ++++++|+..|++|++|..|.++.+||.-.+
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 3 5688999999999999999999999997654
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.91 E-value=8.3e-23 Score=114.31 Aligned_cols=109 Identities=20% Similarity=0.372 Sum_probs=100.5
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
.|+.|-+ ...|++++.|.+.-+||+++++....+.+|.+.|.++.++| +++.|++|+-|...++||++.+.+.+.++.
T Consensus 149 ScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 149 SCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred EEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence 5677776 56778999999999999999999999999999999999999 999999999999999999999999888866
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++.+.|.|+|.-+++|+.|+.+++||+|..
T Consensus 228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred cccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 4689999999999999999999999999974
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=4.9e-23 Score=126.68 Aligned_cols=109 Identities=23% Similarity=0.389 Sum_probs=94.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--- 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~--- 77 (112)
+++++++|||+++++|++|+.|++||...+.+..++..|.+.|+.+.|+..++.+++.+.||+|+.||+...+..++
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999865432222
Q ss_pred --------------------------------------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 78 --------------------------------------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 78 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
++.++..++|+|.+..|++++.|.+|++||+-
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 22344567888888899999999999999863
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=1e-22 Score=112.03 Aligned_cols=110 Identities=22% Similarity=0.274 Sum_probs=96.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|+.+...|+++.|++++. ..|++||+++++ ++.++.+|...|+.+.|..+|+++++|++||++++||++...+.+.+
T Consensus 43 VNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~ 121 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY 121 (311)
T ss_pred eeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc
Confidence 567889999999998886 689999998766 46788999999999999999999999999999999999987655444
Q ss_pred --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
..+++.+.++|+..-|++|..+|.|++||+.+.
T Consensus 122 ~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 122 QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 457789999999999999999999999999864
No 18
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.7e-23 Score=119.37 Aligned_cols=107 Identities=27% Similarity=0.357 Sum_probs=99.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|+.+.|+||++++++++.|..|++|+.++++.+..+.+|-+.|..++|+.|.+++++|+.|.++++|++++.+....+..
T Consensus 370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG 449 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG 449 (480)
T ss_pred eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999887776664
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
.+-.+.|+|+|..+++|+.|.-+++|.
T Consensus 450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 345778899999999999999999994
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=8.7e-24 Score=124.23 Aligned_cols=112 Identities=22% Similarity=0.447 Sum_probs=102.3
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..+.|+.+|..|++++.|+.+++||.++++++..+
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF 296 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE
Confidence 56888999 899999999999999999987 6778899999999999999999999999999999999999999999887
Q ss_pred cCC--CeEEEEeeCC-CEEEEEeCCCcEEEEECcCCC
Q 045566 79 QLP--DRCYALTVRY-PLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 79 ~~~--~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~ 112 (112)
... ..++.|+|++ +.+++|+.|+.|+.||+|+++
T Consensus 297 ~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 297 HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 654 4688899987 789999999999999999874
No 20
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=7.8e-22 Score=120.25 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=93.9
Q ss_pred CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.+++|+|++ +.|++++.|+.|++||+.+++....+..|...|.+++|+|++.++++++.|+.|++||+++++.+..+.
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 5689999975 699999999999999999888888888899999999999999999999999999999999988776654
Q ss_pred CCC----eEEEEeeCCCEEEEEe----CCCcEEEEECcCC
Q 045566 80 LPD----RCYALTVRYPLMVVGT----ADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~~~----~~~~~~~~~~~~~~~~----~d~~v~~~d~~~~ 111 (112)
.+. ....|.+++..+++++ .|+.|++||+++.
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 432 3456777777777654 4789999999864
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=9.5e-23 Score=116.93 Aligned_cols=112 Identities=25% Similarity=0.354 Sum_probs=102.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|..+++++-..++++++.|++|+.||+..++.++.+.+|-+.|.|++.+|.-..+++|+.|..+++||+++...+..+..
T Consensus 196 vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 196 VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred eeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 35688999999999999999999999999999999999999999999999989999999999999999999988877654
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
++..+.+.+....+++|+.|++|++||++.++
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence 45677778888899999999999999999874
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=3.2e-22 Score=122.55 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=103.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|+|++++|+.+.+++|+.|.+.++|+++.......+.+|...+.|+.|+|..+.+++++.|.+|++|.+.+..++.++.+
T Consensus 466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG 545 (775)
T ss_pred ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence 68999999999999999999999999998888889999999999999999999999999999999999999999999886
Q ss_pred CC---eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 PD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+. -...|-.++.++++++.||.+++|++++.+
T Consensus 546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 54 345677899999999999999999998763
No 23
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=5.6e-22 Score=111.39 Aligned_cols=111 Identities=20% Similarity=0.405 Sum_probs=92.7
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC-c-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce--
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ-P-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-- 75 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-- 75 (112)
|.+++|+| ....++.++.|++|++|++..... . .....|.+++.+++|+.+|..+++|+.|+.+++||+.+++..
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v 109 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV 109 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence 57899999 556777899999999999976422 2 234568899999999999999999999999999999988654
Q ss_pred EEecCCCeEEEEeeCCC--EEEEEeCCCcEEEEECcCC
Q 045566 76 HTQQLPDRCYALTVRYP--LMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~--~~~~~~~d~~v~~~d~~~~ 111 (112)
..+..+++.+.|-+... .|++|+.|.++++||+|..
T Consensus 110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred eecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 55667788888866544 8999999999999999975
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.7e-22 Score=113.27 Aligned_cols=111 Identities=27% Similarity=0.416 Sum_probs=100.0
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC---------------CCEEEEeeCCCcEEE
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE---------------MNLLATGSWDKTLKY 66 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~i~~ 66 (112)
..++.+.||..+++|+.|.++++|-+.+.+....+..|+.+|.|++|.|. ++.+.+++.|++|++
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 45778889999999999999999999999888889999999999999874 257889999999999
Q ss_pred eeCCCCCceEEecCC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 67 WDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 67 w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
||+.++.++.++..+ +..++|+|.|++++++..|+++++||+++++
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 999999999888665 4789999999999999999999999998864
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.2e-22 Score=122.05 Aligned_cols=110 Identities=23% Similarity=0.349 Sum_probs=99.7
Q ss_pred eeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
-+++|+| |.+.+++++.|++|++|.+....+..++.+|+..|+|+.+-+ +.+++++|+.|..+++||.++..++.++
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence 4789999 778999999999999999999999999999999999999977 5679999999999999999999988877
Q ss_pred cC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.. .+....|+|.-+++++|+.||++++|+-.+.
T Consensus 224 eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred hcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 65 4567889999999999999999999987653
No 26
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=3.1e-23 Score=118.19 Aligned_cols=112 Identities=15% Similarity=0.272 Sum_probs=103.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.|++|+.|...+++|+.||.+++|.+.++.+++.+. .|...|+|+.|+.|+.++++++.|.++++.-++.++++..+.
T Consensus 266 Vlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 266 VLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred eEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc
Confidence 5799999999999999999999999999999999886 899999999999999999999999999999999999988877
Q ss_pred CCC---eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 80 LPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 80 ~~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.+. +...|.++|..+++++.||+|++|+.++.+
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred CccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence 654 567889999999999999999999988754
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.88 E-value=1.3e-21 Score=115.20 Aligned_cols=112 Identities=23% Similarity=0.423 Sum_probs=100.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC---------CEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM---------NLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~i~~w~~~~ 71 (112)
|.++.|+|.+.+|++++.|+++++|+.........+..|...|..+.|+|.+ ..+++++.|.++++||...
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 6789999999999999999999999988777777888899999999999853 5688999999999999999
Q ss_pred CCceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 72 PNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 72 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+.+++.+. .++..++|+|+++++++|+.||.|.+|+.++++
T Consensus 442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 99988773 467889999999999999999999999998764
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.88 E-value=5.1e-21 Score=114.06 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=96.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
|.|+.|+|||+++++.+.|+.+.+||-.+++.+..+. .|.+.|..+.|+||+.++++++.|.++++||+.+.+.+.+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence 6799999999999999999999999999999988886 8999999999999999999999999999999976653332
Q ss_pred ec----------------------------------------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 78 QQ----------------------------------------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 ~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+. ..++++..++++.++++|+.||.|.-||..++
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 21 12357788888999999999999999998765
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=3.8e-21 Score=107.98 Aligned_cols=110 Identities=17% Similarity=0.346 Sum_probs=92.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|..+.|+|+|..|++|+.|..|.+|+...- +....+++|.++|..+.|.++++.+++++.|..++.||.++++.+..++
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 567899999999999999999999996433 3345678999999999999999999999999999999999999999888
Q ss_pred CCCeEEE-EeeC---CCEEEEEeCCCcEEEEECcC
Q 045566 80 LPDRCYA-LTVR---YPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 80 ~~~~~~~-~~~~---~~~~~~~~~d~~v~~~d~~~ 110 (112)
.+...+. +.|. ...+.+++.|+++++||+|+
T Consensus 130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred cccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 7764332 2332 34677788899999999994
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.88 E-value=5.9e-21 Score=105.18 Aligned_cols=109 Identities=21% Similarity=0.351 Sum_probs=94.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ- 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~- 79 (112)
|.++.|..+|+.+++|++||+++|||++.....+.+. +.++|+++..+|+...+++|..+|.|++||+.+..+.+.+.
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence 5688999999999999999999999999855544444 77999999999999999999999999999998876554442
Q ss_pred ---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 80 ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
..+.++...|+|..++.+...|++++|++-+
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3457889999999999999999999999865
No 31
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.1e-21 Score=105.46 Aligned_cols=109 Identities=23% Similarity=0.343 Sum_probs=94.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC--CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-----
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG--GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN----- 73 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~----- 73 (112)
|.+++|+|.|++|++++.|.++-||.-..+ +.+.++.+|+..|.|++|+++|.++++++.|+.+-+|......
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 578999999999999999999999986544 4566889999999999999999999999999999999887443
Q ss_pred -ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 74 -PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.+..+...+..+.|+|....|++++.|.+|++|+-.
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence 234455567889999999999999999999999754
No 32
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=120.81 Aligned_cols=111 Identities=22% Similarity=0.359 Sum_probs=98.6
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC----c
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN----P 74 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~----~ 74 (112)
|++++|++ ...+|++|++||.|++||++..+...++.+....|..+.|+| .+..|+++..+|.+.+||++... .
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k 215 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK 215 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH
Confidence 56899999 567899999999999999999998888888888999999999 78899999999999999998764 3
Q ss_pred eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 75 VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+..+..++.++.|+|++.+|++|+.|+.|+|||+..+
T Consensus 216 ~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 216 LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred hhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 3456778889999999999999999999999998754
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=105.61 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=102.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|..+.|+-+|++.++|+.|.+|++|++..+..+.++.+|...|..++.+.+...+++|+.|+.+.+||+.+++..+.+..
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998877765
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++.+.|+.....+++|+.|..+++||-|..
T Consensus 100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred ccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 4578899999999999999999999998753
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.4e-21 Score=105.00 Aligned_cols=111 Identities=23% Similarity=0.406 Sum_probs=93.4
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|.++.|++ .++.+++++.|++|++|+...++.+.++.+|...|...+|+| .+..+++++.|+.+++||++.......+
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i 186 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI 186 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE
Confidence 46788888 566788889999999999999999999999999999999999 7889999999999999999887655545
Q ss_pred cCCC-e--EEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QLPD-R--CYALTV-RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~~~-~--~~~~~~-~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
..+. . ++.|+. +...+++|+.|+.|+.||+|+.
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 5543 3 344433 5678999999999999999875
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.5e-21 Score=118.88 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=95.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|..++|+. ..+|++++.|.+|++|++...+++..+. |...|+|++|+| |.++|++|+-|+.+++|++...+......
T Consensus 372 ILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D 449 (712)
T KOG0283|consen 372 ILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND 449 (712)
T ss_pred heeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh
Confidence 56889985 6688899999999999998777777665 999999999999 89999999999999999998887765443
Q ss_pred --CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 --LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.-++++++.|+|+..++|+.+|.+++|+.+..
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 34689999999999999999999999998653
No 36
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=4.4e-20 Score=113.78 Aligned_cols=109 Identities=16% Similarity=0.280 Sum_probs=88.7
Q ss_pred CeeEEEcCCCCE-EEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTT-VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.+++|+|++.. +++++.|+.|++||+++++....+. +...|.+++|+|+|.++++++.|+.+++||+++++.+..+.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 568999998875 5789999999999999887766665 56789999999999999999999999999999988776665
Q ss_pred CCC---eE-----EEEeeCCCEEEEEeCCC----cEEEEECcC
Q 045566 80 LPD---RC-----YALTVRYPLMVVGTADR----NLVVFNLQN 110 (112)
Q Consensus 80 ~~~---~~-----~~~~~~~~~~~~~~~d~----~v~~~d~~~ 110 (112)
.+. .. ..|++++.++++++.|+ .|++||+++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 432 11 12347788899888774 799999985
No 37
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.8e-21 Score=120.13 Aligned_cols=109 Identities=19% Similarity=0.416 Sum_probs=92.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC--------------------------------C------------------
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS--------------------------------G------------------ 30 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~--------------------------------~------------------ 30 (112)
|.++.|+++|++||+|+.|+.|+||.+.. .
T Consensus 270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~ 349 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVL 349 (712)
T ss_pred EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcccc
Confidence 56899999999999999999999997644 0
Q ss_pred ----------CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--CeEEEEee-CCCEEEEE
Q 045566 31 ----------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--DRCYALTV-RYPLMVVG 97 (112)
Q Consensus 31 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~ 97 (112)
++...+.+|.+.|..+.|+.+ .+|++++.|.++++|++....+++.+... +++++|+| +.+++++|
T Consensus 350 ~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 350 LPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred CCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeec
Confidence 122345678889999999975 48889999999999999988888887665 58999999 67899999
Q ss_pred eCCCcEEEEECcC
Q 045566 98 TADRNLVVFNLQN 110 (112)
Q Consensus 98 ~~d~~v~~~d~~~ 110 (112)
+-|++++||++..
T Consensus 429 SLD~KvRiWsI~d 441 (712)
T KOG0283|consen 429 SLDGKVRLWSISD 441 (712)
T ss_pred ccccceEEeecCc
Confidence 9999999999764
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.87 E-value=9.5e-22 Score=114.09 Aligned_cols=111 Identities=22% Similarity=0.356 Sum_probs=94.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---eE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VH 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---~~ 76 (112)
|.++.|++++.++++|+.+|.|++|+..... +..+.. |...|++++|+|+...|++++.|+.|++||....+. +.
T Consensus 141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred ceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 6789999999999999999999999975433 334444 458999999999888999999999999999977654 34
Q ss_pred EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 77 TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.+...++++.|+|....+++++.|..|++||.++++
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 455577899999999999999999999999999874
No 39
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3.2e-20 Score=104.42 Aligned_cols=110 Identities=62% Similarity=1.116 Sum_probs=100.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC--CEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM--NLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|.+++|+.+|..+++|+.|+++++||+.++ ....+..|..+|.++.|-+.. ..+++|+.|.++++||.+...++...
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 578999999999999999999999999988 456677899999999998744 48999999999999999999999999
Q ss_pred cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
..+.++.+.+.-.+.++++..++.|.+|+|+++
T Consensus 154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 154 QLPERVYAADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence 999999999888899999999999999999775
No 40
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=110.49 Aligned_cols=107 Identities=22% Similarity=0.327 Sum_probs=96.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
+++.+|+|||..|.+|..|+.|++||+..+.....+++|.++|..++|+.+|.++++++.|+.|++||+|..+....+..
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence 36889999999999999999999999999998889999999999999999999999999999999999998876665533
Q ss_pred ----CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 81 ----PDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
++..+.|+..|.+++.++.|=.|++++
T Consensus 430 ~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 430 DEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred cccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 467899999999999998887777776
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.86 E-value=4.7e-20 Score=118.29 Aligned_cols=111 Identities=21% Similarity=0.366 Sum_probs=95.3
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|.+++|++ ++.++++++.|+.|++||+.+++.+..+..|...|.+++|+| ++.++++++.|+.|++||+++...+..+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 35788987 578999999999999999998888888889999999999997 7889999999999999999988777665
Q ss_pred cC--CCeEEEEe-eCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QL--PDRCYALT-VRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~--~~~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.. .+.++.|. +++..+++|+.|+.|++||++++
T Consensus 615 ~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 615 KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 44 34556664 46889999999999999999864
No 42
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=1.4e-20 Score=108.58 Aligned_cols=109 Identities=25% Similarity=0.498 Sum_probs=90.1
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC---c
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---P 74 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~---~ 74 (112)
|..++|+| ....|++|+.|+.|+|||++.+.. ....+.|.+.|+-+.|+....++++|+.+|++++||+++-+ +
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence 34689999 567889999999999999987732 33447899999999999987799999999999999998643 3
Q ss_pred e---EEecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECc
Q 045566 75 V---HTQQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 75 ~---~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~ 109 (112)
+ ..++.+++++.|+|.. ..+++++.|..|.+||+.
T Consensus 340 VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 3 3445678999999864 578888999999999985
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-21 Score=121.61 Aligned_cols=111 Identities=18% Similarity=0.327 Sum_probs=103.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|..++|+|...++.++-.+|.|++||.+.+..+..+..|.++|..+.|+|.+++|++|+.|..|++|+.++.+++.++.+
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G 91 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG 91 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998877766
Q ss_pred C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+ ++...|++..+++++++.|.+|+||+..+.
T Consensus 92 HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 5 478889999999999999999999998765
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.86 E-value=2.5e-20 Score=109.84 Aligned_cols=109 Identities=20% Similarity=0.388 Sum_probs=93.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE---
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--- 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~--- 77 (112)
|++++|+.+|..|++|+.||.+++|+ ..+..+.++..|.++|.++.|+..|.++++++.|+++.+||..++...+.
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 68999999999999999999999999 45778888889999999999999999999999999999999865532111
Q ss_pred -----------------------------------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 78 -----------------------------------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
+..++.++.|+|.+..|++++.|+++++|....
T Consensus 317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 111235788888999999999999999998654
No 45
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=6e-20 Score=113.42 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=100.3
Q ss_pred CeeEEEcCCCCEEEEEcCC-CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|..++|+..|.+++.|+.. |++.+|+......+...++|...+++++++|||+++++|+.|+.|++||...+-++.++.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence 4578899999999998764 799999998888888889999999999999999999999999999999999999998886
Q ss_pred CC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 LP---DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+ ++.+.|+..++.+++.+.||+|+.||+...
T Consensus 390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 54 578899999999999999999999998764
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.4e-20 Score=117.07 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=101.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|..++|+|++.++++|+.|-.|++|+..+.+++.++.+|...|..+.|+++.+++++++.|.+|++|+..+.+++..+.+
T Consensus 54 VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG 133 (1202)
T KOG0292|consen 54 VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG 133 (1202)
T ss_pred cceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CC---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 81 PD---RCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+. -+..|+|....+++++-|.+|++||+.
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred CceEEEeeccCCccceEEEecccceEEEEeec
Confidence 64 356789999999999999999999975
No 47
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.85 E-value=5.3e-21 Score=113.98 Aligned_cols=112 Identities=18% Similarity=0.414 Sum_probs=88.8
Q ss_pred CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCc-EEEe-----eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566 1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQP-VTVA-----MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~-~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
++|.+|+|. ...+++++.|+++++|++...+.- ..+. +..-+++..+|+++++.+++|+.||.|.+|+.....
T Consensus 271 lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 271 LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred eeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc
Confidence 468899995 467899999999999999765532 2222 234568899999999999999999999999975432
Q ss_pred --ce----EEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 74 --PV----HTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 74 --~~----~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+. ..+.. .++++.|+++|++|++-+.|..+++||+|+++
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 11 11222 56899999999999999999999999999864
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.3e-19 Score=101.18 Aligned_cols=111 Identities=17% Similarity=0.282 Sum_probs=94.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--------------------------------------------CcEEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--------------------------------------------QPVTV 36 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--------------------------------------------~~~~~ 36 (112)
|+++.|+++|..++++++|..+++||..+++ .++.+
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF 96 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF 96 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc
Confidence 5789999999999999999999999975432 23345
Q ss_pred eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 37 AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 37 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+|...|.+++.+|-+..+++++.|++|++||++..++...+... ....+|+|.|-+++++.....|++||+|..
T Consensus 97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 678899999999998899999999999999999988877666554 356789999999999988889999999875
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.85 E-value=2.9e-20 Score=104.45 Aligned_cols=111 Identities=23% Similarity=0.334 Sum_probs=97.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceEEe-
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQ- 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~~~- 78 (112)
|-.+.|.++++.+++++.|.+++.||.++++.....+.|...++.+.-..-|. ++.+++.|+++++||+++..+++.+
T Consensus 93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence 34678999999999999999999999999999999999999999988555444 5567888999999999999888888
Q ss_pred -cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 -QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+.+..++.|...+..+.+|+-|+.|++||+|..
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccC
Confidence 456678888888899999999999999999865
No 50
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=4.1e-20 Score=108.00 Aligned_cols=110 Identities=30% Similarity=0.392 Sum_probs=90.0
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCC--CCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC-ce
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLS--GGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN-PV 75 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~-~~ 75 (112)
|..++|++ +...|++++.|+.+.|||+++ .++......|.+++.|++|+| ++..+++|+.|++|.+||+|+.+ ++
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL 309 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence 45688999 567889999999999999994 455556778999999999999 77889999999999999999864 45
Q ss_pred EEecC---CCeEEEEeeC-CCEEEEEeCCCcEEEEECcC
Q 045566 76 HTQQL---PDRCYALTVR-YPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 76 ~~~~~---~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~ 110 (112)
+.+.. .+..+.|+|. ...+++++.|+.+.+||+..
T Consensus 310 h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 310 HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 55544 3456778885 45788899999999999863
No 51
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=2.2e-19 Score=105.19 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=96.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee--ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|+.+..+|.|.+|++++.|+..-+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.++.....+
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 45678899999999999999999999998887665543 2345899999999999999999999999999987766555
Q ss_pred c---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 Q---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. .++..+.|+.+|.++++++.|+.|++||+|..
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 4 46789999999999999999999999999974
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=103.98 Aligned_cols=99 Identities=25% Similarity=0.399 Sum_probs=91.2
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC---CeEEEE
Q 045566 11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYAL 87 (112)
Q Consensus 11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~---~~~~~~ 87 (112)
.++.+++.|+++++||+.++.++.++.+|.+.|..++|+|.|++++++.+|+++++||+++.++....+.+ +.++.|
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 58899999999999999999999999999999999999999999999999999999999999988877654 367888
Q ss_pred eeCCCEEEEEeCCCcEEEEECc
Q 045566 88 TVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 88 ~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+.+..++++|+-|..+++|.-|
T Consensus 385 h~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred CCCCceEEeccccceeeeeecC
Confidence 8888999999999999999743
No 53
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.84 E-value=7.4e-19 Score=100.98 Aligned_cols=110 Identities=15% Similarity=0.259 Sum_probs=100.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.+++.+|+.+++++|+.|..-.+|++.++..+..+.+|+..|+++.|+.+|.++++|+.+|.+++|...++.....+..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~ 146 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ 146 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999887777643
Q ss_pred C---CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
. ..=+.|+|.+..++.|+.||.+-+|.+.+
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 3 34578899999999999999999999876
No 54
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=8.3e-20 Score=105.99 Aligned_cols=112 Identities=21% Similarity=0.351 Sum_probs=96.7
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCC-------CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG-------GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|..++|+| +...+|+|++|.+|.+|.+..+ ++...+.+|...|--++|+| -.+.+++++.|..|.+|++.+
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT 163 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence 45788999 6778999999999999998754 34567889999999999999 456788999999999999999
Q ss_pred CCceEEecCC--CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 72 PNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+..+..+..+ +.+++|+.+|.++++.+.|..|++||.++++
T Consensus 164 geali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 164 GEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred CceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence 9877766654 4678899999999999999999999999874
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.84 E-value=1.3e-18 Score=98.88 Aligned_cols=111 Identities=26% Similarity=0.435 Sum_probs=95.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.+++|+|+++.+++++.++.+.+|++.+.+....+..|...+..+.|.|++..+++++.++.+.+|++.+.+.+..+..
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 91 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence 57899999999999999999999999988887777888888999999999999999999999999999988665555433
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
....+.+.+++.++++++.++.+.+||++++
T Consensus 92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence 4567888888888888888999999998754
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=99.33 Aligned_cols=110 Identities=24% Similarity=0.435 Sum_probs=87.3
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--CceEEec
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NPVHTQQ 79 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~~~~~~ 79 (112)
..++.+.++..+++|+.|..+.+||+.+++..+.+.+|.+.|+.++|+.+...+++|+.|..+++||.+.. ++++.+.
T Consensus 63 lD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 63 LDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred eeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh
Confidence 45666778889999999999999999999999999999999999999999999999999999999998764 3444442
Q ss_pred C-CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 L-PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. ....+.+.-.+.-+++|+.||+++.||+|.|
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCcEEEEEeecc
Confidence 2 2233444445556666777777777776655
No 57
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=8.9e-20 Score=112.10 Aligned_cols=107 Identities=17% Similarity=0.323 Sum_probs=98.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.|+.|+|..+.++++|.|.+|+||.+.+..++.++.+|...|....|-.++.++++++.||.+++|++++..+.+.+..
T Consensus 508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred CC---eEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 81 PD---RCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
+. ..++.++....+++|+.||.|.+|.
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEEee
Confidence 43 4566677788999999999999995
No 58
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=102.56 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=93.0
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
.|+.|++-|.++|+|+.||.|.+||+.+......+..|..+|++++|+++|+.+++++.|..+.+||+..+.+++.+..+
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 58899999999999999999999999998888889999999999999999999999999999999999877644332210
Q ss_pred --C-----------------------------------------------eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 82 --D-----------------------------------------------RCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 82 --~-----------------------------------------------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+ ....|++.|+++++|...|.+.++|..+.
T Consensus 107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL 185 (405)
T ss_pred CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence 0 11235667889999999999999998764
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.7e-19 Score=99.68 Aligned_cols=110 Identities=22% Similarity=0.437 Sum_probs=93.6
Q ss_pred eeEEEcC-CCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
..++|++ ..+.+++++.||.+++||+... +++..++.|...|.++.|++ ....+++++.|++|++|+..-++.+.++
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf 143 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF 143 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence 4689999 4578899999999999997543 46677889999999999998 7778899999999999999999999988
Q ss_pred cCCCe---EEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566 79 QLPDR---CYALTVR-YPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~~~~---~~~~~~~-~~~~~~~~~d~~v~~~d~~~~ 111 (112)
..+.. ...|+|. ++.+++++.|+.+++||++.+
T Consensus 144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 77653 4567774 678999999999999999864
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=9.4e-20 Score=103.41 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=97.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
|.+++|+|.|.++++|.+...+++||+++.++-... ..|.+.|+++.+++.+++.++++.||.|++||--..+++..
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t 298 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT 298 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHH
Confidence 578999999999999999999999999887764432 46889999999999999999999999999999888888766
Q ss_pred ecC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 78 QQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+.. .+.+..|..+++++++.+.|..+++|.+.+++
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 532 33566788999999999999999999998763
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.83 E-value=1.5e-18 Score=111.50 Aligned_cols=110 Identities=15% Similarity=0.295 Sum_probs=89.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC----C----CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG----G----QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|.+++|+|+++++++|+.|+.|++|+.... . +...+ .+...+.+++|++ .+.++++++.|+.|++||+.+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 568999999999999999999999997532 1 11222 2356789999987 578999999999999999998
Q ss_pred CCceEEecC---CCeEEEEee-CCCEEEEEeCCCcEEEEECcCC
Q 045566 72 PNPVHTQQL---PDRCYALTV-RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 72 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+.+..+.. .+..+.|+| ++.++++++.|+.|++||++++
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence 877665543 457888986 6789999999999999999875
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.6e-18 Score=96.46 Aligned_cols=109 Identities=24% Similarity=0.468 Sum_probs=90.0
Q ss_pred eeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcE---EE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--Cc
Q 045566 2 LCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPV---TV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NP 74 (112)
Q Consensus 2 ~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~ 74 (112)
-.++|+|. |..|++|+.|..|++|+...+.... .+ .+|+..|.+++|+|.|+++++++.|.++.+|.-... ++
T Consensus 18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec 97 (312)
T KOG0645|consen 18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC 97 (312)
T ss_pred EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE
Confidence 47899997 8899999999999999987533211 12 368899999999999999999999999999975533 34
Q ss_pred eEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 75 VHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 75 ~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
+..++. .+.+++|+++|++|++++.|+.|-||.+..
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE 136 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence 444444 568999999999999999999999998764
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=6e-20 Score=108.37 Aligned_cols=110 Identities=19% Similarity=0.313 Sum_probs=96.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|..++|+++|..+.+++.|+.+++||+++++....+. ....+.|+.|+|++ ..|++|+.|+.|+.||.++++.++.+.
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 4578999999999999999999999999999988775 34567999999976 788999999999999999998776664
Q ss_pred C---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 L---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. .+..+.|-+++..+++.+.|+.++||+.+.+
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 4 4577889999999999999999999998765
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.5e-20 Score=107.43 Aligned_cols=111 Identities=18% Similarity=0.382 Sum_probs=97.7
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--------EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--------TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
.|..|+|||+++++|+-||.+.+|+.-+++... .+..+..+|.|+.|+.|...+++|+.||.|++|.++++.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 578899999999999999999999988776432 234567899999999999999999999999999999999
Q ss_pred ceEEec----CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 74 PVHTQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 74 ~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+++.+. ..+.++.|+.++..+++++.|..+++.-++.|+
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence 987664 356789999999999999999999999888764
No 65
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=104.14 Aligned_cols=110 Identities=23% Similarity=0.404 Sum_probs=95.7
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---E
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---H 76 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~ 76 (112)
.+++++|++..+++|++|+.|++|.+...+.. ..+..|.+++++++++|++.+++++...+.+.+||+.+.+.. .
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence 58899999999999999999999999865532 355679999999999999999999999999999999876642 1
Q ss_pred E-ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 77 T-QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. +...+.+++|+|+..++++|+.|-.|.+|++..|
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 2 3446789999999999999999999999999876
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=3.5e-19 Score=112.74 Aligned_cols=110 Identities=21% Similarity=0.344 Sum_probs=95.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC------------------CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS------------------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 62 (112)
|+|+.|+|||++||+|++|..|.+|.... .+....+.+|...|..++|+|++.++++++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 67999999999999999999999998762 012345678999999999999999999999999
Q ss_pred cEEEeeCCCCCceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 63 TLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 63 ~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.|.+|+.++...+..+. ..+..+.|+|-|+++++-+.|++|++|++.+
T Consensus 152 sViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred eEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 99999998886655554 4567899999999999999999999998643
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.82 E-value=3.5e-18 Score=97.18 Aligned_cols=111 Identities=24% Similarity=0.355 Sum_probs=95.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.++.|+++++++++++.++.+.+|++.+.+....+..|...+.++.|+|++.++++++.++.+.+||+++.+.+..+..
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 175 (289)
T cd00200 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175 (289)
T ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence 46789999988999888899999999987877777778888999999999988888888899999999987766555433
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
....+.++++++.+++++.++.+++||++++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 4578899999989999999999999999764
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.5e-19 Score=103.59 Aligned_cols=110 Identities=20% Similarity=0.370 Sum_probs=96.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
|.-+.|+++|++||+++.|.+.-+|.+..-.. ..++.+|..+|..+.|+||.+++++++.+..+.+||..++...+.
T Consensus 227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL 306 (519)
T ss_pred EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence 34688999999999999999999998765444 457789999999999999999999999999999999999887765
Q ss_pred ecC----CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 78 QQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 ~~~----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
+.. ...+.+|.|++..+++|+.|+.+..||+.-
T Consensus 307 y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 307 YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 543 457889999999999999999999999763
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=2.6e-18 Score=98.81 Aligned_cols=112 Identities=21% Similarity=0.402 Sum_probs=98.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|+++.|+-+|.+||+|..+|.|++|...++.....+...-..+.=+.|+|.+..++.|+.||.+.+|.+.++...+.+..
T Consensus 109 Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 109 VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 67999999999999999999999999998888777766667788899999999999999999999999988655444443
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+.++-.|.|+|+.++++..||+|++||+.+++
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 45677899999999999999999999999874
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-19 Score=106.20 Aligned_cols=111 Identities=23% Similarity=0.375 Sum_probs=92.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.+++|-.||++++.|...|.|+++|+.+...++.+..|+.+++.+.|+| +...+++|+.|+.+++||+.+......+.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 46789999999999999999999999665555677889999999999999 56677888899999999998876533333
Q ss_pred CC---CeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566 80 LP---DRCYALTVR-YPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~~---~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+ +++.+++|. +..+++|+.||.|++||+|..
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 32 467888875 558899999999999999864
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.7e-18 Score=102.36 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=90.6
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC-CceEE
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP-NPVHT 77 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~-~~~~~ 77 (112)
|..+.|+| ++..+++|+.|+.+++||+.+......+.+|++.|.|.+++| .+..+++|+.||.|++||.+.. ..+..
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 34577899 456778889999999999988776557889999999999999 5557899999999999999987 55555
Q ss_pred ec--CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 78 QQ--LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+. .++..+.+-|.|..+++++.+ .+++||+-+|
T Consensus 193 lnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G 227 (487)
T KOG0310|consen 193 LNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTG 227 (487)
T ss_pred ecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCC
Confidence 54 467788888999888888654 7999999755
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=98.35 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=94.6
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC--EEEEeeCCCcEEEeeCCCCCceEE--
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDTRQPNPVHT-- 77 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~i~~w~~~~~~~~~~-- 77 (112)
++++. +++++++|+.|.+|++||++.......+..|.+.|+++.|.+... ++++|..||.|.+|+...-..+..
T Consensus 47 tavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 47 TALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred eEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence 45555 689999999999999999999999998989999999999988554 899999999999999877655544
Q ss_pred -ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 78 -QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+...++.++++|.+.+.++.+.|+.+++||+-+|+
T Consensus 125 ~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 44567889999999999999999999999987764
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.80 E-value=5.9e-18 Score=94.29 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=95.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
++.+.++.+|.+|++|+.|....+|--.+++.+-++.+|.+.|.|+..+-+.+.+++|+.|..+++||+++++.+...+.
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec
Confidence 46788999999999999999999998778999999999999999999999999999999999999999998875433221
Q ss_pred C--------------------------------------------------------CeEEEEeeCCCEEEEEeCCCcEE
Q 045566 81 P--------------------------------------------------------DRCYALTVRYPLMVVGTADRNLV 104 (112)
Q Consensus 81 ~--------------------------------------------------------~~~~~~~~~~~~~~~~~~d~~v~ 104 (112)
+ .+...|.|.++.+++|..||.|.
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is 172 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSIS 172 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEE
Confidence 1 12456677778899999999999
Q ss_pred EEECcCC
Q 045566 105 VFNLQNP 111 (112)
Q Consensus 105 ~~d~~~~ 111 (112)
+||.+++
T Consensus 173 ~~da~~g 179 (327)
T KOG0643|consen 173 IYDARTG 179 (327)
T ss_pred EEEcccC
Confidence 9998876
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.80 E-value=3.9e-19 Score=100.95 Aligned_cols=111 Identities=22% Similarity=0.361 Sum_probs=93.5
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCC------------C------CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCc
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS------------G------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 63 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 63 (112)
.+.+|+|||.++++|+.|..|++.|++. + -.++++..|..+|+++.|+|....+++++.|++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 4678999999999999999999999861 1 124566789999999999999999999999999
Q ss_pred EEEeeCCCCCceEEe-----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 64 LKYWDTRQPNPVHTQ-----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 64 i~~w~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
++++|+......+.+ ..+++++.|+|.|+++++|.....+++||+++.|
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 999999765433222 2367899999999999999999999999998754
No 75
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=9.4e-20 Score=112.04 Aligned_cols=112 Identities=22% Similarity=0.322 Sum_probs=102.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.++.|+++..+++.|+.+|.|++||+...+..+++.+|...+.++.|+|-+.+++.|+.|..+.+||.+...+.+.+..
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 56899999999999999999999999999998899999999999999999999999999999999999998888877765
Q ss_pred C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+ +..+.|.|+|.+++.++.|..+++||+..|+
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence 4 4678899999999999999999999997663
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-18 Score=103.74 Aligned_cols=110 Identities=34% Similarity=0.539 Sum_probs=91.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEee--CCCcEEEeeCCCCCceEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGS--WDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~~~~i~~w~~~~~~~~~~ 77 (112)
|..+.|++++.++|+|+.|+.+.|||....++...+..|.+.|..++|+| ....+|+|+ .|+.|++||..+++.+..
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 45689999999999999999999999988889999999999999999999 777888875 489999999876652211
Q ss_pred ec----------------------------------------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 78 QQ----------------------------------------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 ~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.. ..+-.++++|++..+++++.|.++++|++-.
T Consensus 384 vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 384 VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 10 0123577889999999999999999998643
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=2.9e-18 Score=95.14 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=99.1
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---EEe
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HTQ 78 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~~~ 78 (112)
.-++|+-++..++.....|.|.|......+++..+..|.....|+.|+|+|++|++|+.|-.+.+||+...-+. ..+
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL 230 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence 45788888888888888899999999999999999999999999999999999999999999999999876554 445
Q ss_pred cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
..+++.+.|+.+|++|++++.|..|-|=++++|+
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 6689999999999999999999999888888764
No 78
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.1e-18 Score=107.99 Aligned_cols=111 Identities=21% Similarity=0.353 Sum_probs=90.6
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eE
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VH 76 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~ 76 (112)
|..+.|+| .+..++++.+.|.+++||++.... ...+..|.++|.|+.|+|++.++++|+.|+.|++||..+.+. ..
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence 46789999 678999999999999999997765 456789999999999999999999999999999999976543 33
Q ss_pred Ee--cCCCeEEEEeeCCC-EEEEEeC--CCcEEEEECcCC
Q 045566 77 TQ--QLPDRCYALTVRYP-LMVVGTA--DRNLVVFNLQNP 111 (112)
Q Consensus 77 ~~--~~~~~~~~~~~~~~-~~~~~~~--d~~v~~~d~~~~ 111 (112)
.+ ..++..+.|.|..+ +|++++. |-.|+|||++.+
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 33 24667889998655 4555543 778999999875
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.79 E-value=9.1e-19 Score=100.81 Aligned_cols=107 Identities=23% Similarity=0.399 Sum_probs=91.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.|+.+ |...+++|..|.+|++||..+......+.+|.+.|.|+.|. .+.+++|+.|.+|++||+++++++..+..
T Consensus 200 VYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 200 VYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred eEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 456666 56778999999999999998888888999999999999995 56999999999999999999999887765
Q ss_pred CC-eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 PD-RCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+. ..+.+..+..++++++.|.++.+||+..+
T Consensus 276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hcceeEEEEEeCCEEEEecCCceeEEEeccCc
Confidence 54 45556667789999999999999999875
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.1e-17 Score=93.24 Aligned_cols=109 Identities=33% Similarity=0.629 Sum_probs=92.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
+.+++|.+ ...+++|+.||+|+.+|+.+++.. .+-.|..++.|+.+.+....+++|++|+.|++||.++......+..
T Consensus 57 lL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 57 LLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred eeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence 35677875 567789999999999999877664 3455999999999999888899999999999999998666666666
Q ss_pred CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.....+.+-.++.|++|+.+..+.+||+|+.
T Consensus 135 ~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 135 GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred CceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 6677888889999999999999999999975
No 81
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.79 E-value=5.2e-18 Score=98.06 Aligned_cols=110 Identities=23% Similarity=0.442 Sum_probs=89.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---eEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~---~~~ 77 (112)
|.++.|++ ...+++++.|.+|+.||+.+++...++. ....++|+..+|...++++|+.|+.+++||++++.- .+.
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 46788987 7788999999999999999998877766 345789999999999999999999999999998641 223
Q ss_pred ecC---CCeEEEEeeCC-CEEEEEeCCCcEEEEECcCCC
Q 045566 78 QQL---PDRCYALTVRY-PLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 ~~~---~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+.. -+..+.|+|.. .+|++++.|+++++||+|+.+
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 322 34677888854 578889999999999999753
No 82
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.78 E-value=4.2e-19 Score=102.15 Aligned_cols=104 Identities=22% Similarity=0.372 Sum_probs=90.1
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
+.+.| +.+++++++.|.++++|++.+.+.++++.+|+..|-|+.+ .++++++|+.|.+|++||...+.+++.+.++
T Consensus 324 NvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 324 NVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred eeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 45555 4569999999999999999999999999999999999888 4889999999999999999999888776664
Q ss_pred C---eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 82 D---RCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 82 ~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. +++.| +.+.+++|..||+|++||+.++
T Consensus 400 EeLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 400 EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred HHhhhheee--cCceeeeccccceEEEEecccc
Confidence 3 45555 6788999999999999999765
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=3.6e-18 Score=100.03 Aligned_cols=110 Identities=25% Similarity=0.529 Sum_probs=88.7
Q ss_pred eEEEcCC-CCEEEEEcCCCcEEEEEcCCCCC-------cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC--
Q 045566 3 CSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQ-------PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ-- 71 (112)
Q Consensus 3 ~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~-- 71 (112)
.++|++. .-.+++++.|+.+.+||+..... ...+.+|...|..++|++ ...+|++++.|+.+.+||.|+
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 5788884 45789999999999999864332 335678999999999999 677889999999999999994
Q ss_pred CCc---eEEecCCCeEEEEee-CCCEEEEEeCCCcEEEEECcCCC
Q 045566 72 PNP---VHTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 72 ~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.++ ...+..++.++.|+| ++..|++|+.|++|.+||+|+.+
T Consensus 262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc
Confidence 333 234455678999988 45688899999999999999863
No 84
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=5.9e-17 Score=88.89 Aligned_cols=106 Identities=15% Similarity=0.372 Sum_probs=83.6
Q ss_pred CeeEEEcCCCCEEEEE--cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCCce
Q 045566 1 VLCSTWKDDGTTVFSG--GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPV 75 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~ 75 (112)
|.+++|+|+|+.+++. ..+..+.+||++ .+.+..+ ....+..+.|+|+|++++.++. .|.+.+||.++.+.+
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 5789999999987654 456789999986 4444444 3467789999999999998864 466999999988877
Q ss_pred EEecCC-CeEEEEeeCCCEEEEEeC------CCcEEEEECc
Q 045566 76 HTQQLP-DRCYALTVRYPLMVVGTA------DRNLVVFNLQ 109 (112)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~------d~~v~~~d~~ 109 (112)
...... ...+.|+|+|++++++.. |..++||+..
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 766543 467899999999998864 7788999864
No 85
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-17 Score=101.83 Aligned_cols=111 Identities=23% Similarity=0.367 Sum_probs=95.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|.|++.+|...++.+++.|-.|++||-... .+.+++.+|...|.+++|.| |.+.|++++.|++|++|.+....+..++
T Consensus 100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl 179 (794)
T KOG0276|consen 100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL 179 (794)
T ss_pred eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence 578999999999999999999999997643 45678899999999999999 8889999999999999999888776666
Q ss_pred cC---CCeEEEEee--CCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QL---PDRCYALTV--RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~---~~~~~~~~~--~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.. .++++.+-+ +.+++++|+.|..+++||..+.
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred eccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 54 456666644 4579999999999999998764
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.2e-18 Score=102.49 Aligned_cols=111 Identities=18% Similarity=0.348 Sum_probs=94.4
Q ss_pred CeeEEE-cCCCCEEEEEcCCCcEEEEEcCCCCC----------cEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566 1 VLCSTW-KDDGTTVFSGGCDKQVKMWPLLSGGQ----------PVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 1 v~~~~~-~~~~~~l~~~~~~~~v~~~~~~~~~~----------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~ 68 (112)
|.|+++ .++...+++|+.|+.|.+||++++.. ...+. ++..++.+++.++.+..+++|+..+.+++||
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 568888 77889999999999999999986622 11222 6788999999999999999999999999999
Q ss_pred CCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 69 TRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 69 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++.+.+..+.+ .++.+..+.+|..+++++.||.|++||+...
T Consensus 200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 999987766554 5678889999999999999999999999754
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.78 E-value=1.4e-17 Score=96.25 Aligned_cols=111 Identities=24% Similarity=0.467 Sum_probs=94.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcC-------------------------CCCCcEEEeeccCCeeEEEEccCCCEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL-------------------------SGGQPVTVAMHDAPIKEVAWIPEMNLL 55 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 55 (112)
|-+++..++|..+++|+.|..+.+|+.. +..++.++.+|.++|.++.|++ ...+
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~ 274 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVI 274 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCce
Confidence 4578888999999999999999999932 1134557789999999999998 6688
Q ss_pred EEeeCCCcEEEeeCCCCCceEEecCCC--eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 56 ATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 56 ~~~~~~~~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.+++.|++|+.||+.+++.+..+..+. .++..++...++++|+.|..+++||.|++.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 999999999999999998887775543 566777888899999999999999999874
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2e-17 Score=93.32 Aligned_cols=108 Identities=15% Similarity=0.338 Sum_probs=92.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~ 78 (112)
|+++.|+|.+..|++++.||.+++|+.........+. |..++.+.+|.+ ...+++|+.||.|+.+|+.+++. +..+
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccC
Confidence 5789999999999999999999999998775544444 889999999987 45788999999999999988764 4556
Q ss_pred cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
..+++++...+-...+++|+.|++|++||.|.
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 66778888888788999999999999999984
No 89
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.7e-19 Score=108.69 Aligned_cols=111 Identities=20% Similarity=0.313 Sum_probs=100.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec-
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ- 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~- 79 (112)
+.++.|+|-+.+.+.|+.|..+.+||.+...+...+.+|...+..+.|+|+|.+++.++.|..+++||...++....++
T Consensus 115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred cceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999888886665
Q ss_pred --CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 --LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
..+..+-|+|..-.+..|+.|+.+++||+++.
T Consensus 195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ccccccccccCchhhhhccCCCCceeeeecccee
Confidence 55667778999889999999999999999864
No 90
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.2e-17 Score=98.00 Aligned_cols=109 Identities=25% Similarity=0.447 Sum_probs=93.1
Q ss_pred eEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC---CCceEE
Q 045566 3 CSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ---PNPVHT 77 (112)
Q Consensus 3 ~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~---~~~~~~ 77 (112)
+++|+.. .+.||+|+.|.+|.+||+.++++..++..|...|.+++|+| .+..+++|+.|+++.+.|.|. ......
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 4556553 46889999999999999999999999999999999999999 778899999999999999984 334456
Q ss_pred ecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566 78 QQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~ 111 (112)
+...+..+.|++.. ..++++..||.++-+|+|++
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP 362 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence 67788889998865 46778888999999999986
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=2.1e-17 Score=91.86 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=95.0
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-- 79 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-- 79 (112)
.|+.|+|+|++||+|+.|..+.+||+...-+.+.+..+.-+|..+.|+-+|+++++++.|+.|-+=+++++..+..++
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc
Confidence 478999999999999999999999998888888999999999999999999999999999999999999999887765
Q ss_pred CCCeEEEEeeCCCEEEEEeCC---------CcEEEEECc
Q 045566 80 LPDRCYALTVRYPLMVVGTAD---------RNLVVFNLQ 109 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~d---------~~v~~~d~~ 109 (112)
.+...++|+|...+|+-++.| |.+++|-+.
T Consensus 273 ~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 273 GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 456789999999888777664 557776554
No 92
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=7e-18 Score=104.47 Aligned_cols=108 Identities=23% Similarity=0.403 Sum_probs=98.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.|+..+|+++.+++|+.|..|++|-+.-+.+-..+..|...|.++.|-|+...|++++.|+.++-||-..-..++.+..
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~ 632 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG 632 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc
Confidence 57999999999999999999999999998888888889999999999999999999999999999999887777766655
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
.+.+++..|+|.++++++.|.+|++|..
T Consensus 633 H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 633 HHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred chheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 4578899999999999999999999974
No 93
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=97.71 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=92.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC---------C
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR---------Q 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~---------~ 71 (112)
|.|++-+|+|.+++.|...+.+++|.+.++..+..+..|-..|+|+.|+-|+.++++|+.||.|.+|++- +
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 4688899999999999999999999999999999899999999999999999999999999999999752 2
Q ss_pred CCceEEecC---CCeEEEEee--CCCEEEEEeCCCcEEEEECcCC
Q 045566 72 PNPVHTQQL---PDRCYALTV--RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 72 ~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++++.+.. +++.+...+ ....+++++.|..+++||+..+
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 234444433 344555444 3468999999999999999865
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.76 E-value=3.2e-18 Score=102.37 Aligned_cols=111 Identities=24% Similarity=0.432 Sum_probs=87.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--cE-EEeeccC--CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-c
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ--PV-TVAMHDA--PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-P 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~--~~-~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~ 74 (112)
++.++|+|+++.+|.|+.||.|.+|+...... .. .-..|.. .|+|+.|+++|+++++-+.|..+++||+++.+ +
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 46789999999999999999999999743321 11 2245665 89999999999999999999999999998865 3
Q ss_pred eEEe-----cCCCeEEEEeeCCCEEEEEeC------CCcEEEEECcCC
Q 045566 75 VHTQ-----QLPDRCYALTVRYPLMVVGTA------DRNLVVFNLQNP 111 (112)
Q Consensus 75 ~~~~-----~~~~~~~~~~~~~~~~~~~~~------d~~v~~~d~~~~ 111 (112)
+... ..+.+..+|+|+.+++++|.. .+.+.+||..+.
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce
Confidence 3322 234567899999999999855 467888887654
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-17 Score=100.63 Aligned_cols=109 Identities=20% Similarity=0.349 Sum_probs=96.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee-ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-- 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-- 77 (112)
|+++.|+++|.+|++|..+|.|.+||..+.+.+..+.. |...|-+++|. +..+.+|+.++.|..+|++..+....
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~ 297 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTL 297 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhh
Confidence 57899999999999999999999999999998888887 99999999997 67888999999999999998765433
Q ss_pred --ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 78 --QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+...+-.+.|++++.++++|+.|+.+.|||....
T Consensus 298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred hcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 4455678899999999999999999999998543
No 96
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=8.4e-18 Score=97.27 Aligned_cols=111 Identities=23% Similarity=0.484 Sum_probs=88.6
Q ss_pred eeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCc---EEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC---
Q 045566 2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQP---VTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN--- 73 (112)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~--- 73 (112)
..++||| ....+++|..-+.+++|...++.-. ..+.+|...|..++|+| ....|++|+-|+.|++||.|.++
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence 3688999 3345778888889999998775422 24567999999999999 56688999999999999999873
Q ss_pred ce--EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 74 PV--HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
++ ..+...++.+.|+....+|++|+.||.++|||+|+.+
T Consensus 295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~ 335 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK 335 (440)
T ss_pred eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence 22 3345567888888888899999999999999999753
No 97
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=2.5e-18 Score=102.87 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=97.6
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP- 81 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~- 81 (112)
+++.+||.+..++|+.||.|.|||+.+...++.+++|...+.||..+++|..+.+|+-|.+++.||+++.+.+..+.+.
T Consensus 514 ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S 593 (705)
T KOG0639|consen 514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS 593 (705)
T ss_pred hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999887766654
Q ss_pred -CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 82 -DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+-++...|++.++++|..++.+.+.....+
T Consensus 594 QIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred hheecccCCCccceeeecccCcEEEEecCCc
Confidence 445667889999999999999988766544
No 98
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=3.4e-18 Score=104.87 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=95.2
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCC-------CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|..+.|+| |...|+++++||.|++|.+..+. +...+..|...|+++.|+| -...+++++.|-+|++||+++
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 56789999 88999999999999999986543 3446778999999999999 667889999999999999998
Q ss_pred CCceEEec---CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 72 PNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 72 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.+....+. ..+-.++|+|+|+.+++.+.||++++|+.+..+
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 87655443 345688999999999999999999999987653
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=5.6e-18 Score=101.38 Aligned_cols=112 Identities=16% Similarity=0.289 Sum_probs=94.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|.++...|+|+.|++|++-.++.|||+....+-. ++.........++.+||.+..++++.||.|.+||+++...++.+
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence 4567789999999999999999999997665432 33333345677889999999999999999999999998888777
Q ss_pred cCC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 79 QLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 79 ~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
..+ ..++.++++|..|.+|+.|..|+-||+|+++
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 653 4788889999999999999999999999863
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=102.12 Aligned_cols=109 Identities=27% Similarity=0.399 Sum_probs=94.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-CceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~~~~~~ 79 (112)
|.++..+ +..+++|+.|+.|++|+..+.+.+..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+.
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc
Confidence 4566665 889999999999999999999999999999999999988765 88999999999999999999 8887776
Q ss_pred CCCe-EEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 80 LPDR-CYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.+.. ...+...++++++++.|+.|++||..+++
T Consensus 411 ~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 411 GHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred CCcccccccccccceeEeccccccEEEeecccCc
Confidence 6542 34556678899999999999999988764
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=97.37 Aligned_cols=110 Identities=22% Similarity=0.360 Sum_probs=92.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.++++...+.++++|+.|.++++||..++++...+.+|.+.+.++... ...+++|+.|.+|++|++.+++.+..+.+
T Consensus 252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc
Confidence 4567777778899999999999999999999999999999999998774 45677889999999999999998887774
Q ss_pred C-CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 P-DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+ ....+...++..+++|+.|+.|.+||.++++
T Consensus 330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred ccccEEEEEecCCEEEEEecCceEEEEEhhhce
Confidence 2 2334444568999999999999999998764
No 102
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=5.7e-17 Score=100.56 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=98.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.|+++|||+++|+++--|.+|++|-+.+-+.-..+.+|.-+|.|+..+|+++.++||+.|+.|++|-+.-+.+-..+.+
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 57999999999999999999999999999888889999999999999999999999999999999998877766555544
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.+..+.|.|....+++++.|+.++-||-.+
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 446788999999999999999999998654
No 103
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=99.45 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=68.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
|+.++|+|||++||+.++||.++|+|..+.+.+...+..-+...|++|+|||+++++|++|-.|.+|.+...+.+..
T Consensus 293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred ccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 56789999999999999999999999988777666666678899999999999999999999999999988776644
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.2e-16 Score=97.78 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=98.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.+++.++.|..++.|+..+.+++||.++.+.+-.+.+|...|..+..+++|..+++++.|++|++||+...+++.++..
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred C---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 P---DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+ +.++..+++-..+++|+.|+.|..=|++++
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4 345555667779999999999999888874
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-16 Score=99.76 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=91.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee--------ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM--------HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 72 (112)
|.++.|+|++++||+.+.||.|++|++.++....++.+ ....+..++|+|++..++..+.|+.|.+|+..+.
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 57899999999999999999999999987766544321 1345678999999888889999999999998877
Q ss_pred CceEEecC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 73 NPVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 73 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.....+.. ....+.|+|+|.+|++++.||.|.+||+.+
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 65554433 246789999999999999999999999874
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=5.6e-17 Score=103.05 Aligned_cols=111 Identities=20% Similarity=0.319 Sum_probs=91.2
Q ss_pred CeeEEEcCCCCEEEEEc--CCCcEEEEEcCC------------CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 045566 1 VLCSTWKDDGTTVFSGG--CDKQVKMWPLLS------------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~--~~~~v~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~ 66 (112)
|.+++.+|++..+++|+ .|+.+.+|+... .+++.+...|.+.|+|+.|+|+|+++++|++|+.|.+
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 46889999999999999 888888998642 2334566789999999999999999999999999999
Q ss_pred eeCCCC------------------Cce---EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 67 WDTRQP------------------NPV---HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 67 w~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
|+.... +.+ ..+...+..++|+|++.++++++.|++|.+||.+++
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence 987630 011 223345678899999999999999999999998875
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-15 Score=85.92 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=62.1
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC------eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD------RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
....+.+.|+|+|+.++.+...+.+++.|--.+..+..+.... ...+|.|+++++++|+.||+|.+|++++++
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 4567899999999999999999999999988887666654321 356889999999999999999999998874
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.73 E-value=9e-18 Score=97.95 Aligned_cols=111 Identities=17% Similarity=0.342 Sum_probs=96.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|+.+.|.++++.++.++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|++++.||+....+......
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence 56889999999999999999999999999999999999999999999988666699999999999999998877776655
Q ss_pred CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
...+..+......+++|..|++|++||.+.+
T Consensus 302 ~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 302 GSQCNDIVCSISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred cccccceEecceeeeecccccceEEEeccCC
Confidence 5555444445777899999999999998875
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.6e-16 Score=87.74 Aligned_cols=104 Identities=19% Similarity=0.314 Sum_probs=85.7
Q ss_pred cCCCCEEEEEcCCCcEEEEEcCCCC---CcEEEeeccCCeeEEEEc-c-CCCEEEEeeCCCcEEEeeCCCCCceE-----
Q 045566 7 KDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWI-P-EMNLLATGSWDKTLKYWDTRQPNPVH----- 76 (112)
Q Consensus 7 ~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~i~~w~~~~~~~~~----- 76 (112)
+--|++|++|+.|+.|+|+..+.+. .+.++.+|.++|..++|. | .|..+++++.||.|.+|.-.+++-.+
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~ 99 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA 99 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhh
Confidence 3357899999999999999988665 456889999999999995 4 79999999999999999987775322
Q ss_pred EecCCCeEEEEeeC--CCEEEEEeCCCcEEEEECcC
Q 045566 77 TQQLPDRCYALTVR--YPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 77 ~~~~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~ 110 (112)
.+...+++++|.|. |-.|++++.||.|.+.+.++
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 23446678888886 45889999999999988764
No 110
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.3e-15 Score=88.05 Aligned_cols=107 Identities=14% Similarity=0.213 Sum_probs=91.8
Q ss_pred EEEcCCCCEEEEEc--CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCc-EEEeeCCCCCceEEecC
Q 045566 4 STWKDDGTTVFSGG--CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 4 ~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~ 80 (112)
+++++.+.+++.-+ ..|.|.+||..+-++...+..|++.+-+++|+++|.++++++..|+ |+++.+.+++.+..+..
T Consensus 135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 33444556776642 4689999999999999999999999999999999999999999988 89999999998888765
Q ss_pred C-----CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 81 P-----DRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 81 ~-----~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
. +.+++|++++++|.+.+..++|++|.+..
T Consensus 215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 4 35789999999999999999999998764
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.73 E-value=3.6e-17 Score=90.67 Aligned_cols=110 Identities=18% Similarity=0.382 Sum_probs=94.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.+++|+.|.+.|++|+.+..+++||++..+ ++.++.+|.+.|..+.|....+.+++...|+.|++||.+++..++.+.
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 4688999999999999999999999998765 556788999999999999988888998999999999999999888775
Q ss_pred C--CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 L--PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. ++.++-++++|+++.+ ...+.|.+||..+.
T Consensus 183 ~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf 215 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSF 215 (334)
T ss_pred cCCCCcceeeccCCCEEEE-ecCceeEEeccccc
Confidence 4 6678888999886554 45678999998764
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=7.3e-16 Score=84.75 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=94.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC----c--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN----P-- 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~----~-- 74 (112)
|.+++..|.|++|++|..|....+||++.+..++.+..|...|.|+.|+|...++++++.|..|++-|++..- +
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999986432 1
Q ss_pred -eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 75 -VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+..++.......|+|+.-.+++.+.|.++.+|-+.
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 22334445567889998899999999999999764
No 113
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=9.9e-17 Score=91.57 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=90.7
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceEEecC------CC
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQL------PD 82 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~------~~ 82 (112)
..+++.++.-|.|++.|+.+++....+.+|...|+.+.++| +.+++++++.|..|++|++++..++..+.+ .+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 45788889999999999999999889999999999999999 667889999999999999999998876633 45
Q ss_pred eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 83 RCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
-++.|+.++.++++++.|..+.+|++..+
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 67888999999999999999999999854
No 114
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.72 E-value=7.3e-16 Score=85.59 Aligned_cols=111 Identities=14% Similarity=0.300 Sum_probs=81.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEee---------------------------------------ccC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---------------------------------------HDA 41 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------------------~~~ 41 (112)
|..+-|....+.+++.+.|+.|++||.+++.....+.- -..
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence 34566777777888889999999999887765544321 012
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.|.+...+|+...+++|+.|..++.||..++..+..+ ..++.++.|+|+|...++|+.||+|++|.+..+
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 3445556666667777777777888887777665443 346788999999999999999999999987654
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.72 E-value=6.7e-16 Score=90.32 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=89.6
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-------C
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-------D 82 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-------~ 82 (112)
...+++|..|+.|++||.+........+.+. .|+++..++++..+.+++.|..+.+.|+++....+.+... .
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 4567788899999999999888888777554 9999999999999999999999999999999887776543 3
Q ss_pred eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 83 RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+...|+|++.++++|+.||.|+||++.+++
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCce
Confidence 678999999999999999999999998874
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=5.9e-17 Score=92.67 Aligned_cols=110 Identities=23% Similarity=0.414 Sum_probs=92.1
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEEecC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQQL 80 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~~~~ 80 (112)
.+..|-..|.++++++.|.+-.+||+++++.+..+.+|....+.+.-+|..+++++.+.|.+.++||++..- .+..+..
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred EehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc
Confidence 456677789999999999999999999999999999999999999999999999999999999999998542 2233333
Q ss_pred ---CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 ---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.+++..|..+ ..+++|+.|.+|++||++++.
T Consensus 356 HtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 356 HTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred cccceeEEEEecC-CceeecCCCceEEEeeecccc
Confidence 3456666655 468999999999999999863
No 117
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.71 E-value=6.3e-16 Score=86.36 Aligned_cols=111 Identities=17% Similarity=0.342 Sum_probs=89.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE----------------------------------------------
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV---------------------------------------------- 34 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---------------------------------------------- 34 (112)
|.|+..+-+.+.+++|+.|.++++||.++++.+.
T Consensus 55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred EEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 4567777788888899999999999887664322
Q ss_pred -------EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----EecCCCeEEEEeeCCCEEEEEeCCCcE
Q 045566 35 -------TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----TQQLPDRCYALTVRYPLMVVGTADRNL 103 (112)
Q Consensus 35 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~v 103 (112)
.++.+.+.++...|.|.+..+++|..+|.|..||.++++.+. .+...++.++++++..++++++.|.+-
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc
Confidence 222344567888899999999999999999999999875442 334467889999999999999999999
Q ss_pred EEEECcCC
Q 045566 104 VVFNLQNP 111 (112)
Q Consensus 104 ~~~d~~~~ 111 (112)
++||+++.
T Consensus 215 kl~D~~tl 222 (327)
T KOG0643|consen 215 KLVDVRTL 222 (327)
T ss_pred eeeeccce
Confidence 99998875
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=3.3e-17 Score=94.52 Aligned_cols=108 Identities=12% Similarity=0.250 Sum_probs=91.5
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-- 78 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-- 78 (112)
+.++|+|++--+.++++|..+..||++.... +....+|.+.|.+++|+|.|+-|++|+.|.+|++|..+.+...-.+
T Consensus 233 N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht 312 (433)
T KOG0268|consen 233 NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT 312 (433)
T ss_pred cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence 4689999888889999999999999987654 4456789999999999999999999999999999998776543322
Q ss_pred --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
..++-++.|+.+..++++|+.|+.|++|.-+
T Consensus 313 kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 313 KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 1245678899999999999999999999754
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=2.1e-16 Score=89.44 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=90.1
Q ss_pred eeEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCC-CceE
Q 045566 2 LCSTWKDD---GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQP-NPVH 76 (112)
Q Consensus 2 ~~~~~~~~---~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~-~~~~ 76 (112)
.+-+++|- -.++|+|..+-+|++.|+..+....++.+|.+.|.++.|+|... .+++|+.|+.+++||++.. .+..
T Consensus 147 YshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~ 226 (397)
T KOG4283|consen 147 YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR 226 (397)
T ss_pred ehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeE
Confidence 34456772 34788899999999999999999999999999999999999655 5688999999999999754 2221
Q ss_pred E-----------------ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 77 T-----------------QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 77 ~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
. +...+..++|..++.++++++.|.++++|+..+|+
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 1 12234578899999999999999999999988764
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=1.5e-16 Score=93.89 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=67.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 72 (112)
+.+++.++||++|++|+.|..+.||+..+.+++..+.+|.+.|.+++|......+++++.|+.+++|++...
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 468999999999999999999999999999999999999999999999998889999999999999998643
No 121
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=2.9e-16 Score=92.12 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=91.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe-
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ- 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~- 78 (112)
|..+.|+||.+++++|+.+..+.+||..++.....++ ++...+.+.+|.|||..+++|+.|+.+..||+.....-.--
T Consensus 272 V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g 351 (519)
T KOG0293|consen 272 VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG 351 (519)
T ss_pred eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc
Confidence 4678999999999999999999999999998877664 34678899999999999999999999999998754321111
Q ss_pred --cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 79 --QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
...+..+++.++|.++++.+.|..+++++..+
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 12356788899999999999999999998764
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=99.17 Aligned_cols=106 Identities=11% Similarity=0.158 Sum_probs=93.7
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-- 79 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-- 79 (112)
.++..+.....++.+..|-.|+++|..+.+..+.+.+|.+.++.+.|+|+|+++++++.|++|++||+.++..+-.+.
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 345556666778889999999999999999999999999999999999999999999999999999999999886654
Q ss_pred CCCeEEEEeeCCCEEEEEeCC-CcEEEEE
Q 045566 80 LPDRCYALTVRYPLMVVGTAD-RNLVVFN 107 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~d-~~v~~~d 107 (112)
.+...+.|+|+|.+|++...| ..|++|-
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 456789999999999999998 5799994
No 123
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.2e-16 Score=90.25 Aligned_cols=108 Identities=18% Similarity=0.354 Sum_probs=90.7
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe----
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ---- 78 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~---- 78 (112)
+++|+.+|..+++++.||.+|+|+.+....+.....|...|.++.|+||++.+++-+.+ ..++|+.+++..+...
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS 227 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence 68999999999999999999999988777777778899999999999999999999999 9999998766211000
Q ss_pred -----------------------------------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566 79 -----------------------------------------------------QLPDRCYALTVRYPLMVVGTADRNLVV 105 (112)
Q Consensus 79 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~ 105 (112)
...+.+++.+.+|++++.|+.||.|.+
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 002356788889999999999999999
Q ss_pred EECcCC
Q 045566 106 FNLQNP 111 (112)
Q Consensus 106 ~d~~~~ 111 (112)
++..+.
T Consensus 308 ~~~~~l 313 (398)
T KOG0771|consen 308 YDAKSL 313 (398)
T ss_pred EEecee
Confidence 987664
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=5.6e-16 Score=95.40 Aligned_cols=111 Identities=13% Similarity=0.173 Sum_probs=90.7
Q ss_pred CeeEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-
Q 045566 1 VLCSTWKDDGTTVFSGGCD-----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP- 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~- 74 (112)
|.+++.+|+++++|+++.. ..|++|+..+......+..|.-.|+.++|+|+++++++.+.|+++.+|.......
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch
Confidence 5789999999999999753 4589999988888888999999999999999999999999999999998743321
Q ss_pred ------eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 75 ------VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 75 ------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
...+..-+-...|+|++.++++++.|.+|.+|.....
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 1111122235567889999999999999999987653
No 125
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.3e-16 Score=93.96 Aligned_cols=111 Identities=20% Similarity=0.349 Sum_probs=90.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCc---
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNP--- 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~--- 74 (112)
|+|+.|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-| +...+++|..|..|+++|+...+.
T Consensus 53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~ 132 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM 132 (758)
T ss_pred ecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence 689999999999999999999999999877776655 58999999999999 566889999999999999974321
Q ss_pred -------eEE---ecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566 75 -------VHT---QQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 75 -------~~~---~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~ 111 (112)
... +...+..++..|++ ..+.+++.||.++.+|+|.+
T Consensus 133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 111 11234566777776 67899999999999999985
No 126
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.8e-15 Score=83.07 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=89.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|+++-..|+.+.++.++.|+.++-||+++++...++++|.+.++++.-......+++|+.||++++||.++.+.+..+..
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence 56788888777777777899999999999999999999999999999877667889999999999999999988766543
Q ss_pred C-----------CeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 P-----------DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ~-----------~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
- ....++.-+..++++|+ ...+.+|.++..+
T Consensus 197 yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred ccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCC
Confidence 1 12356666777777664 4578999998753
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.68 E-value=2.9e-15 Score=93.91 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=94.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
+++++.++.|++.+.|...|.|-+|++..+-....+ +.|..+|+.++...-++.+++++.+|.+.+||+.+...+..
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 468899999999999999999999999988776666 57999999999998889999999999999999876541111
Q ss_pred e--------------------------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 78 Q--------------------------------------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 ~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
. ...++.++|+|+|+++++++.|++|++||+.++.
T Consensus 531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 0 1123689999999999999999999999998763
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=6.5e-16 Score=94.44 Aligned_cols=111 Identities=17% Similarity=0.305 Sum_probs=86.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE--EeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC----
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT--VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN---- 73 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~---- 73 (112)
|..+.|.|....|++++.|.++++||+++.+.... +.+|...|.+++|.| +...|++|+.|+.+.+||++...
T Consensus 103 ifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 103 IFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL 182 (720)
T ss_pred eEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence 35678999677899999999999999998887665 789999999999999 67789999999999999987432
Q ss_pred ----------------ceE-------EecCC---Ce---EEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566 74 ----------------PVH-------TQQLP---DR---CYALTVRYPLMVVGTA-DRNLVVFNLQNP 111 (112)
Q Consensus 74 ----------------~~~-------~~~~~---~~---~~~~~~~~~~~~~~~~-d~~v~~~d~~~~ 111 (112)
+.. ...++ +. ...+..|...|++++. |+.|++||+|+.
T Consensus 183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 000 00000 01 1334457778888887 999999999975
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=2.5e-15 Score=85.24 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=88.3
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc---CCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP---EMNLLATGSWDKTLKYWDTRQPNPVH 76 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~i~~w~~~~~~~~~ 76 (112)
|..+.|-| |...+.+++.|..+++||.++.+....+. -++.|.+-+++| ...++++|..+-.|++.|+..+..-+
T Consensus 104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred eeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 46778889 66788889999999999999888777665 456788888888 35578888889999999999988776
Q ss_pred EecC---CCeEEEEeeCCC-EEEEEeCCCcEEEEECcC
Q 045566 77 TQQL---PDRCYALTVRYP-LMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 77 ~~~~---~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~ 110 (112)
.+.. .+-++.|+|..+ .|++|+.||.|++||+|.
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 6654 445677777665 568899999999999985
No 130
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=9.7e-16 Score=92.38 Aligned_cols=110 Identities=14% Similarity=0.219 Sum_probs=89.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC--------CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS--------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 72 (112)
|..++|+|....|++++.|+.+.+|++.. -+++.++.+|.++|.|+++.+++.+..+|+.||.|+.|++...
T Consensus 297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n 376 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN 376 (577)
T ss_pred hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC
Confidence 34677888889999999999999999832 2356688999999999999999999999999999999966422
Q ss_pred C-------------ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 73 N-------------PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 73 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
. ++..+...+..+.++.....|++++.||+++.|+...
T Consensus 377 ~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 377 QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence 1 2222333445788888888999999999999998654
No 131
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=87.17 Aligned_cols=110 Identities=19% Similarity=0.388 Sum_probs=90.4
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCcEEEeeCCCCC-ceEE
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQPN-PVHT 77 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~-~~~~ 77 (112)
|.|++|+| +...++.++....+-||.-....++..+-+|.+.|+.+.|.++|+.+++|.. +-.|..||++..+ ++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 57899999 5568999999889999987788888888899999999999999999988875 6779999998754 3333
Q ss_pred ecCC----CeE--EEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 78 QQLP----DRC--YALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 ~~~~----~~~--~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
+..+ ... +.+.|++++|++|+.||.|++||++.
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 3322 223 44568899999999999999999987
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=9.2e-15 Score=86.57 Aligned_cols=109 Identities=24% Similarity=0.306 Sum_probs=93.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcC---------CCCCcEEEeeccCCeeEEEEccC--CCEEEEeeCCCcEEEeeC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL---------SGGQPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDT 69 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i~~w~~ 69 (112)
|+|+.|+.|+..|++|+.||.|.+|.+. +.++...+..|.-+|+.+...+. ...+++.+.|+++++||+
T Consensus 126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 6899999999999999999999999863 23456677889999999998874 357899999999999999
Q ss_pred CCCCceEEecC--CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 70 RQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 70 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
..+..+..... ...+++++|.+..+++|+.+|.|.+.++.
T Consensus 206 S~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 206 SLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred ccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 99987776655 45788899999999999999999887754
No 133
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=5.3e-15 Score=84.22 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=66.7
Q ss_pred CeeEEEcCCCC--EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566 1 VLCSTWKDDGT--TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 1 v~~~~~~~~~~--~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
|+++.|.+... .|++|+.||.|.+|+....+.+..++.|...|+.++.+|.+++.++.+.|+.+++|++-.++
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 57888988654 89999999999999999998888999999999999999999999999999999999987665
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.6e-14 Score=82.15 Aligned_cols=111 Identities=20% Similarity=0.299 Sum_probs=85.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----cEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP-- 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~-- 72 (112)
|+++.|++.|+.+++|+.|++++|||...... ....+.|.+.|..+.|.+ -|+.+++++.|+++.+|.-...
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 57899999999999999999999999754433 234568999999999965 6889999999999999965211
Q ss_pred C-----c--eEEe---cCCCeEEEEeeC--CCEEEEEeCCCcEEEEECcCC
Q 045566 73 N-----P--VHTQ---QLPDRCYALTVR--YPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 73 ~-----~--~~~~---~~~~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+ - ...+ ...+..+.|.|. |-.+++++.||.++||+...+
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 1 1 1111 234567788874 668899999999999986543
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.9e-14 Score=82.29 Aligned_cols=108 Identities=18% Similarity=0.381 Sum_probs=85.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCe-------------------------------------
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPI------------------------------------- 43 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v------------------------------------- 43 (112)
|++++|+++|++|++++.|..+.+||+..+.++..+. ..++|
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~ 146 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK 146 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence 6799999999999999999999999998775543321 00111
Q ss_pred ----------eEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC----CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 44 ----------KEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 44 ----------~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.+..|.+.|+++++|...|.+.+++..+.+++..++. .+..+-++..++.++.-+.|+.|+.|+++
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 1223556689999999999999999999888877754 34677888899999999999999999876
No 136
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=4.4e-15 Score=87.82 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=93.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-----------------EE-eeccCCeeEEEEccCCCEEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-----------------TV-AMHDAPIKEVAWIPEMNLLATGSWDK 62 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-----------------~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 62 (112)
+.+++++|++++.++++.+++|.-|++.+++... .- ..|...+.+++.++|++++++|+.|+
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 5789999999999999999999999987665320 01 25677899999999999999999999
Q ss_pred cEEEeeCCCCCceEEecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 63 TLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 63 ~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.|.+|+.++.+.++.+.. .+..++|......+++++.|+.+++|++..
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 999999999887776543 567888888888999999999999999864
No 137
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=2.7e-15 Score=87.60 Aligned_cols=112 Identities=16% Similarity=0.314 Sum_probs=88.1
Q ss_pred CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCC---------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQ---------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
|.++.|.++.. .+++|+.|..|++|-+..... ...+..|...|+++.|+|+|..+++|+.+|.+.+|-..
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 35677887555 999999999999998764332 12456799999999999999999999999999999765
Q ss_pred CCC----------------ceEE---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 71 QPN----------------PVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 71 ~~~----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
..+ .... +...+..++|.+++.++.+++.|..+++||++.++
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 110 0111 12345678999999999999999999999999874
No 138
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.1e-14 Score=82.39 Aligned_cols=111 Identities=16% Similarity=0.343 Sum_probs=86.2
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCC-CEEEEeeCCCcEEEeeCCCCC--
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPN-- 73 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~w~~~~~~-- 73 (112)
++++.|+. +-+++.+++-|-+..+||+.++.. ...+..|..+|..++|...+ ..|++.+.||.++++|++...
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 35778887 678899999999999999998643 33567899999999999844 578899999999999997432
Q ss_pred -----------ce--------------------------------------EEecCCCeEEEEeeC-CCEEEEEeCCCcE
Q 045566 74 -----------PV--------------------------------------HTQQLPDRCYALTVR-YPLMVVGTADRNL 103 (112)
Q Consensus 74 -----------~~--------------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~d~~v 103 (112)
++ +.+...++.++|.|. ...+.+++.|..+
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa 312 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA 312 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence 00 112223457888885 4689999999999
Q ss_pred EEEECcCC
Q 045566 104 VVFNLQNP 111 (112)
Q Consensus 104 ~~~d~~~~ 111 (112)
.+||+.+.
T Consensus 313 liWDl~q~ 320 (364)
T KOG0290|consen 313 LIWDLQQM 320 (364)
T ss_pred EEEecccc
Confidence 99998753
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=3.8e-15 Score=85.23 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=62.7
Q ss_pred CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcEEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
|+.+.+.|+. +++++++.|..|++|++++..++..+ .+|...|.++.|++++..+++++.|..+++|++.
T Consensus 138 INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 138 INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 4567888854 68899999999999999999887765 5899999999999999999999999999999987
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.2e-14 Score=87.51 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=92.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-- 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-- 78 (112)
|.+++|++ +..|++.+.+|.|..||+.+.++...+....+.|.+++.+|.+..++.|++||.+..++....+.....
T Consensus 72 IE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l 150 (691)
T KOG2048|consen 72 IESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL 150 (691)
T ss_pred eeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence 46789994 556678888999999999999999988888899999999999999999999998888877666544322
Q ss_pred ---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 79 ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+..+-++.|++++..++.|+.||.|++||...++
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 1234567788888899999999999999998764
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.7e-14 Score=84.21 Aligned_cols=111 Identities=11% Similarity=0.219 Sum_probs=88.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC--CCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCce--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS--GGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPV-- 75 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~-- 75 (112)
|+++.|+|....+.+++.|+.+++|-+.. +..+..+.-...+|.+..|.|+|. .+++++....++.||+.+.+..
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence 68999999999999999999999997753 334555666678999999999988 8888999999999999765411
Q ss_pred -----------EEe----------------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 76 -----------HTQ----------------------------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 76 -----------~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
..+ .+.+..++|+.++..+++++.+|.|.+||++.
T Consensus 296 ~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 296 KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 000 01124678888899999999999999999987
Q ss_pred C
Q 045566 111 P 111 (112)
Q Consensus 111 ~ 111 (112)
+
T Consensus 376 ~ 376 (514)
T KOG2055|consen 376 N 376 (514)
T ss_pred c
Confidence 5
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=1e-13 Score=80.12 Aligned_cols=111 Identities=6% Similarity=0.004 Sum_probs=81.7
Q ss_pred eeEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCcEEEeecc-------CCeeEEEEccCCCEEEE-eeCCCcEEEeeCCCC
Q 045566 2 LCSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQPVTVAMHD-------APIKEVAWIPEMNLLAT-GSWDKTLKYWDTRQP 72 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~-~~~~~~i~~w~~~~~ 72 (112)
.+++|+|+++.++.+ ..++.+.+||+.+++....+..+. .....+.|+|+++.++. ...++.+.+||.++.
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 357899999988554 568999999998877655443221 12346889999987544 445667999999887
Q ss_pred CceEEe--cCCCeEEEEeeCCCEEEEE-eCCCcEEEEECcCCC
Q 045566 73 NPVHTQ--QLPDRCYALTVRYPLMVVG-TADRNLVVFNLQNPQ 112 (112)
Q Consensus 73 ~~~~~~--~~~~~~~~~~~~~~~~~~~-~~d~~v~~~d~~~~~ 112 (112)
+.+... ......+.|+|++.+++++ ..++.|.+||+++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 240 EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 765443 2345678899999998886 458999999998764
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.63 E-value=5.2e-15 Score=87.59 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=84.1
Q ss_pred CeeEEEcCCC--CEEEEEcCCCcEEEEEcCCCC----CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC
Q 045566 1 VLCSTWKDDG--TTVFSGGCDKQVKMWPLLSGG----QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 1 v~~~~~~~~~--~~l~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
|++++|+|.. +.+++|...|+|-+||+.+.+ ....+..|..+|.++.|+| +...+++.+.||+|++-|++...
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence 5799999943 578889999999999996333 2345567899999999999 67788899999999988876432
Q ss_pred ------------------------------------------------ceEEecCCCeEEEEeeCC-CEEEEEeCCCcEE
Q 045566 74 ------------------------------------------------PVHTQQLPDRCYALTVRY-PLMVVGTADRNLV 104 (112)
Q Consensus 74 ------------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~ 104 (112)
.+..+...+..++++|.. .++++++.|++.+
T Consensus 269 ~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 269 SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK 348 (498)
T ss_pred hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence 000011134578888854 5789999999999
Q ss_pred EEECcCC
Q 045566 105 VFNLQNP 111 (112)
Q Consensus 105 ~~d~~~~ 111 (112)
|||+|..
T Consensus 349 IWD~R~l 355 (498)
T KOG4328|consen 349 IWDLRQL 355 (498)
T ss_pred eeehhhh
Confidence 9999864
No 144
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.5e-14 Score=78.80 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=87.6
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEee-------ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-------HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL- 80 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~- 80 (112)
++-.+++|++|.+|++||++-+..+.++.. ..+.|..++..|.|+++++|-.|....+||++.++.++.+..
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence 577899999999999999988777665521 236789999999999999999999999999999998877654
Q ss_pred --CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.++++.|+|...++++++.|..|++-|+.
T Consensus 273 sadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 273 SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 56889999999999999999999998875
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.6e-14 Score=90.34 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=96.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
+.+++++-+|+.++.|+.|-.|++-++........+.+|.++|.++.|+|++.++++..-||.+++||+.++.....+..
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence 46789999999999999999999999999988899999999999999999999999999999999999988765443321
Q ss_pred -----------CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 81 -----------PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 81 -----------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.....+|+|++..++..+.|+.|.+|+...
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 235688999988999999999999998654
No 146
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=3.2e-15 Score=86.52 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=89.7
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEEe
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQ 78 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~~ 78 (112)
|.++.|+| .-..|++|..|+.+.+||+++..++..+.. ....+.++|+|++-.|.+++.|..++.+|++... ++..+
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence 56889999 456778888999999999999988776542 2344789999988899999999999999998754 44444
Q ss_pred cCC---CeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
..+ +..+.|+|.|.-+++|+.|.+|+||..+.+
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 443 356789999999999999999999988765
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.4e-14 Score=80.96 Aligned_cols=107 Identities=13% Similarity=0.234 Sum_probs=80.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC------------------------------------CcEEE--------
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG------------------------------------QPVTV-------- 36 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~------------------------------------~~~~~-------- 36 (112)
|++++|+.+|+.|++++.|+.|++|+++.-. .+..+
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 6899999999999999999999999975310 00000
Q ss_pred ---------------eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CCeEEEEeeCCCEEEEEe
Q 045566 37 ---------------AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGT 98 (112)
Q Consensus 37 ---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 98 (112)
..|.-.+..+-....+.++++++.|..|.+|+++ ++.+..+.. .....+.+|+|+++++++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec
Confidence 0022233444444567899999999999999998 666666644 335667899999999999
Q ss_pred CCCcEEEEEC
Q 045566 99 ADRNLVVFNL 108 (112)
Q Consensus 99 ~d~~v~~~d~ 108 (112)
....|.+|.+
T Consensus 248 FTpDVkVwE~ 257 (420)
T KOG2096|consen 248 FTPDVKVWEP 257 (420)
T ss_pred CCCCceEEEE
Confidence 9999999975
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.62 E-value=1.9e-14 Score=86.44 Aligned_cols=109 Identities=16% Similarity=0.306 Sum_probs=91.0
Q ss_pred eEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCceE--E
Q 045566 3 CSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVH--T 77 (112)
Q Consensus 3 ~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~~--~ 77 (112)
-+.|+|..+ +|.+++.+|.|.+||+....+.... ..|..+...++|+| +..++++.+.|..|.+||.+..+... .
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence 467888655 5677899999999998766665543 57889999999999 67788999999999999998766443 3
Q ss_pred ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 78 QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+..+-..++|.++|.+|+.|...|.|..||+|..
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 4567789999999999999999999999999864
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.6e-14 Score=84.26 Aligned_cols=107 Identities=7% Similarity=0.131 Sum_probs=93.2
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC--
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-- 80 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-- 80 (112)
.+..++++++|+..+..|.|.+....+++.+..++ -++.+..+.|+.+++.++.++.+|.|.+||++...+++.+..
T Consensus 308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred eeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC
Confidence 45678999999999999999999988888887776 467889999999999999999999999999999988877753
Q ss_pred --CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
..+.++.++++.++++|+..|.|.|||.++
T Consensus 387 ~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 387 SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 346788889999999999999999999643
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.61 E-value=2.2e-14 Score=81.18 Aligned_cols=110 Identities=20% Similarity=0.376 Sum_probs=83.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-cEEEe-----eccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-PVTVA-----MHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~ 72 (112)
|.|+.|.|++..+++-. +..|.+|++..... ...+. .++...++-+|+| ++..+++. .++++..||+++.
T Consensus 126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 57999999999887665 67899999987665 33332 2456678889999 66666554 6889999999987
Q ss_pred CceEEecC----CCeEEEEeeCCC-EEEEEeCCCcEEEEECcCCC
Q 045566 73 NPVHTQQL----PDRCYALTVRYP-LMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 73 ~~~~~~~~----~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~ 112 (112)
++...+.. .++.+.|+|+.+ +|++|+.||.|++||.|+.+
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk 248 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK 248 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence 76655432 256788888765 67888999999999999764
No 151
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=3.1e-15 Score=85.76 Aligned_cols=110 Identities=18% Similarity=0.380 Sum_probs=92.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEE------cCCC----------------------------------CCcEEEeecc
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWP------LLSG----------------------------------GQPVTVAMHD 40 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~------~~~~----------------------------------~~~~~~~~~~ 40 (112)
|+++.|++++.++++++.|++-+||. .+.+ .++..+.+|.
T Consensus 193 VNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~ 272 (481)
T KOG0300|consen 193 VNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR 272 (481)
T ss_pred eeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc
Confidence 67999999999999999999999996 2110 1123456788
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 41 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 41 ~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
+.|.+..|-..++++++++.|++..+||++++..+..+..+. +..+-+|..+++++.+.|.+.++||+|.
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence 999999999999999999999999999999999888776654 4556688999999999999999999984
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.61 E-value=1.6e-14 Score=84.45 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=88.4
Q ss_pred CeeEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.-++|+|. .+.|++++.|..|.+|++.+++.+.++. |...|.++.|+.+|.++++.+.|..|++||.++++.+....
T Consensus 134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred EEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 346889995 5688999999999999999999888887 99999999999999999999999999999999998876653
Q ss_pred CC----CeEEEEeeCCCEEEEE---eCCCcEEEEECcCC
Q 045566 80 LP----DRCYALTVRYPLMVVG---TADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~~----~~~~~~~~~~~~~~~~---~~d~~v~~~d~~~~ 111 (112)
.+ .....|-.++..+-+| ..++.+.+||..+.
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence 32 2345566677744433 33678889986653
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.61 E-value=5.2e-15 Score=91.27 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=91.3
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEEe
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQ 78 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~~ 78 (112)
|.++.|+| -...|++++.|.+|++||+.+.+....+.+|.+.|..++|+|+|+.+++.+.|+.+++|..+... ++..-
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG 759 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC
Confidence 57899999 56788999999999999999999888999999999999999999999999999999999987653 44444
Q ss_pred cCC----CeEEEEeeCCCEEEEEeCCC----cEEEEECc
Q 045566 79 QLP----DRCYALTVRYPLMVVGTADR----NLVVFNLQ 109 (112)
Q Consensus 79 ~~~----~~~~~~~~~~~~~~~~~~d~----~v~~~d~~ 109 (112)
+.+ ...+.|..+|+++++.+.|. .|.+||..
T Consensus 760 ~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 760 KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 433 35678889999999887764 46666654
No 154
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=2.2e-14 Score=86.60 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=86.9
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCC----------------------------CCcEEEeeccCCeeEEEEccC
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG----------------------------GQPVTVAMHDAPIKEVAWIPE 51 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~ 51 (112)
|+|+.|-| +...+.++..+|.+.+||.... .++......+..|..++|+||
T Consensus 222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence 57899999 4556777788999999975310 111122223557889999999
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCce---EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 52 MNLLATGSWDKTLKYWDTRQPNPV---HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 52 ~~~~~~~~~~~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
|+++++.+.||.++++|+.+.+.+ +.+...-.+++|+|||+++++|+.|--|.||.+...
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 999999999999999999876543 445566789999999999999999999999987653
No 155
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=8.6e-14 Score=79.53 Aligned_cols=110 Identities=20% Similarity=0.407 Sum_probs=95.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC---CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC----
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---- 73 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~---- 73 (112)
|+|.+|++++..++++.++..|.||.....+ +..++..|...|+.+.|+|..+.+++++.|+.-++|....+.
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp 92 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP 92 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence 6899999999999999999999999987655 455788899999999999999999999999999999984432
Q ss_pred --ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 74 --PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.+..+....+.+.|+|.++.+++|+.-+.|.+|-++.
T Consensus 93 tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 3455666778999999999999999999999987654
No 156
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.59 E-value=4.9e-14 Score=87.04 Aligned_cols=103 Identities=18% Similarity=0.287 Sum_probs=77.5
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
.++..-|++ .+++|+.|..|++|.- ++.+.++.+|.+.|+.+++-++. .|++++.||.|++|++ ++..+..+..+
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh 218 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH 218 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc
Confidence 345555656 7788899999999964 66777888999999999988764 5778889999999998 55555555444
Q ss_pred C---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 82 D---RCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 82 ~---~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
. .++...+++..+++++.|++++||+..
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 3 345555677788888899999998743
No 157
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=3.6e-13 Score=76.91 Aligned_cols=95 Identities=25% Similarity=0.305 Sum_probs=83.2
Q ss_pred EcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEccCCCEEEEeeCCCc-EEEeeCCCCCceEEecC-----CCeEEEE
Q 045566 16 GGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHTQQL-----PDRCYAL 87 (112)
Q Consensus 16 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~-----~~~~~~~ 87 (112)
|-.-|+|++-|+...+. ...+..|.+.|.|++.+-+|..+++++..|+ |++||..++..+..+.. ...+++|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 34568999999876554 5778899999999999999999999999998 99999999999888764 3468999
Q ss_pred eeCCCEEEEEeCCCcEEEEECcC
Q 045566 88 TVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 88 ~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
+|+..++++++..|+++||.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999998875
No 158
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=8.6e-15 Score=87.03 Aligned_cols=101 Identities=19% Similarity=0.305 Sum_probs=83.1
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-- 81 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-- 81 (112)
++-+|-+..+-+|..+|+|.+|.....+++..+..|.++|.++++.++|.+++|.+.|+.+++||+++...++++..+
T Consensus 257 m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~ 336 (545)
T KOG1272|consen 257 MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP 336 (545)
T ss_pred hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC
Confidence 455677778889999999999999999999988899999999999999999999999999999999988776666543
Q ss_pred CeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566 82 DRCYALTVRYPLMVVGTADRNLVVF 106 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~v~~~ 106 (112)
...++++..+ +++.+....+.+|
T Consensus 337 a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 337 ASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred cccccccccc--ceeeecCCeeeee
Confidence 3445555444 5555566678888
No 159
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=4.9e-14 Score=80.49 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=89.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC---CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc---
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG---GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--- 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--- 74 (112)
|+.++|+|..+.|++|+.|..-++|....+ ++...+..+....+++.|+|.++.|++|+..+.|.+|-++....
T Consensus 58 vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 58 VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred eeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence 578999999999999999999999998433 34556667888999999999999999999999999998865531
Q ss_pred ----eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 75 ----VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
...++..+.++.|+|++-.+++|+.|+.+++|.
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 123344568899999999999999999999984
No 160
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.2e-13 Score=80.52 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=95.0
Q ss_pred eeEEEcCC--CCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-
Q 045566 2 LCSTWKDD--GTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT- 77 (112)
Q Consensus 2 ~~~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~- 77 (112)
+++.|-+. ...|+++..-++|++||.+.+.. ...+...+.+++++...|++.++++|...+.+..+|.+.++....
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 46778776 78999999999999999987664 456777788999999999999999999999999999998875543
Q ss_pred ---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 78 ---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+.+.++.+..+|+.+++++++-|+.++|+|+.+.
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 3456788999999999999999999999999873
No 161
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.57 E-value=3.3e-13 Score=83.52 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=81.9
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
..+++-+++ .+++|++||.|++|++ +++.+.+..+|++.+.++....++..+++++.|+++++|+.. .+.+.+..+
T Consensus 183 RgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP 258 (745)
T KOG0301|consen 183 RGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP 258 (745)
T ss_pred eeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence 455665543 4678999999999997 788999999999999999988888899999999999999876 444555444
Q ss_pred C---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 82 D---RCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 82 ~---~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
. .+..+-++|. +++|+.||.|++|-.+
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 3 3444445665 8889999999999765
No 162
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=78.85 Aligned_cols=104 Identities=14% Similarity=0.253 Sum_probs=83.9
Q ss_pred EEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC---CC-----CceE
Q 045566 5 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR---QP-----NPVH 76 (112)
Q Consensus 5 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~---~~-----~~~~ 76 (112)
-....+.++++++.|..|.+|+++ ++.+..+......-+..+.+|+|+++++++..-.+++|.+- .+ ....
T Consensus 194 GiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf 272 (420)
T KOG2096|consen 194 GIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF 272 (420)
T ss_pred eecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh
Confidence 344567899999999999999988 77777777666666788899999999999999999999862 11 1222
Q ss_pred E---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 77 T---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
. +...+...+|+++.+.+++.+.||++++||..
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 2 33345788999999999999999999999864
No 163
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.56 E-value=1.3e-12 Score=75.58 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=82.5
Q ss_pred eeEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE-eeCCCcEEEeeCCCCCceEEec
Q 045566 2 LCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 2 ~~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
.+++|+|+++.+ ++++.++.+.+||..+++....+..+. .+..+.++|+++.+++ +..++.+.+||+++.+.+..+.
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP 112 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence 468899999876 566788999999998877665555433 3467889999886654 4568999999998877666554
Q ss_pred C--CCeEEEEeeCCCEEEEEeCCCc-EEEEECcCC
Q 045566 80 L--PDRCYALTVRYPLMVVGTADRN-LVVFNLQNP 111 (112)
Q Consensus 80 ~--~~~~~~~~~~~~~~~~~~~d~~-v~~~d~~~~ 111 (112)
. ....+.++|++..++++..++. +.+||.+++
T Consensus 113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 2 3467889999999998887754 667787654
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.5e-13 Score=80.01 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcC------CCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL------SGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
|+++.|+.++++|++|+.|..+++|++. +.+++... ..|.+.|.|++|......+.+|..+++|.+.|+.+.+
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q 138 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ 138 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence 5789999999999999999999999974 34555433 3466899999999998999999999999999999988
Q ss_pred ceEEecC-----CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 74 PVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 74 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+..+.. .+..+..+|..+.+++.+.++.|.+||.+..
T Consensus 139 si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 139 SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 8765543 3456777888999999999999999998764
No 165
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=3.2e-15 Score=94.16 Aligned_cols=105 Identities=20% Similarity=0.385 Sum_probs=94.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---EE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~~ 77 (112)
|.|+.|...|+++++|+.|..++||...+..++..+.+|.+.++.++.+.+...+++++.|..|++|-++.+.++ ..
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg 272 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG 272 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence 578999999999999999999999999999999999999999999999998888999999999999999998765 44
Q ss_pred ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 78 QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+.+.+++++|+|-. +.+.||++++||.+
T Consensus 273 htgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 273 HTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cccceeeeccCccc----cCCCCCceEecccc
Confidence 55667889998865 66889999999987
No 166
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=1.1e-12 Score=72.09 Aligned_cols=108 Identities=15% Similarity=0.274 Sum_probs=75.1
Q ss_pred eEEEcCCCCEEEEEcC----------CCcEEEEEcCCC-CCcEEEee-ccCCeeEEEEccCCCEEEEe--eCCCcEEEee
Q 045566 3 CSTWKDDGTTVFSGGC----------DKQVKMWPLLSG-GQPVTVAM-HDAPIKEVAWIPEMNLLATG--SWDKTLKYWD 68 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~----------~~~v~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~--~~~~~i~~w~ 68 (112)
.+.|+|+|..|++-.. -+...+|.++.. .+...+.- ..++|.+++|+|++..++.. ..+..+.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5789999987755433 133455555333 23333332 34579999999999887544 4567899999
Q ss_pred CCCCCceEEecC-CCeEEEEeeCCCEEEEEeCC---CcEEEEECcCC
Q 045566 69 TRQPNPVHTQQL-PDRCYALTVRYPLMVVGTAD---RNLVVFNLQNP 111 (112)
Q Consensus 69 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~ 111 (112)
++ .+.+..+.. ....+.|+|+|+++++++.+ |.+.+||.++.
T Consensus 90 ~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 90 VK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred Cc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 97 555555543 45689999999999998753 66999999864
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.55 E-value=2.9e-13 Score=84.69 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=57.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc---CCCEEEEeeCCCcEEEeeCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP---EMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~i~~w~~~ 70 (112)
+.+++.+|+|++|++|..-|.+++|++...+....+..|+..|.|+.++. ..+++++++.|+.|.++|+.
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 46899999999999999999999999987777777777888888888764 34567777778888887764
No 168
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.8e-13 Score=75.87 Aligned_cols=109 Identities=22% Similarity=0.305 Sum_probs=84.9
Q ss_pred eEEEcC--CCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC----
Q 045566 3 CSTWKD--DGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP---- 72 (112)
Q Consensus 3 ~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~---- 72 (112)
.++|.. -|.+|++++.|+.|.+|.-..++ .......|...|++++|.| .|-.+++++.||.|.+.+.++.
T Consensus 61 qv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~ 140 (299)
T KOG1332|consen 61 KVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT 140 (299)
T ss_pred EEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc
Confidence 455544 78999999999999999866553 2334567899999999999 4667889999999999988765
Q ss_pred --CceEEecCCCeEEEEeeC---C-----------CEEEEEeCCCcEEEEECcCC
Q 045566 73 --NPVHTQQLPDRCYALTVR---Y-----------PLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~d~~v~~~d~~~~ 111 (112)
+....+...++++++.|. | ..|++|+.|..|+||+..++
T Consensus 141 t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred chhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 233445556777888774 3 36999999999999998764
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.8e-15 Score=94.18 Aligned_cols=110 Identities=21% Similarity=0.372 Sum_probs=85.2
Q ss_pred eeEEEcCCCCE----EEEEcCCCcEEEEEcCCC------CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCC
Q 045566 2 LCSTWKDDGTT----VFSGGCDKQVKMWPLLSG------GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 2 ~~~~~~~~~~~----l~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~ 70 (112)
+.++|.+.+.. |+.|.+||.|-+||.... ..+.++..|.+.|..+.|++ .++++++|+.+|.|.+||+.
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 46888886654 888999999999997642 23446678999999999999 55699999999999999998
Q ss_pred CCCceEEe-----cCCCeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566 71 QPNPVHTQ-----QLPDRCYALTVR-YPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 71 ~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+.+.-... ...+.+++|+.. ...|++++.+|++.|||+|..
T Consensus 148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 76543333 223456666543 457788888999999999975
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6.5e-13 Score=81.96 Aligned_cols=111 Identities=14% Similarity=0.252 Sum_probs=85.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|.+++.+|.+..++.|++||.+..++....+... .+...++.+.++.|+|++..+++|+.||.|++||...+..++..
T Consensus 113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~ 192 (691)
T KOG2048|consen 113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII 192 (691)
T ss_pred eeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence 4578999999999999999977777765444332 34456789999999999999999999999999999988877633
Q ss_pred cC-------CCeEEEEee---CCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QL-------PDRCYALTV---RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~-------~~~~~~~~~---~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.. ....+.|+- ....+++|...|.|.+||...+
T Consensus 193 ~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 193 TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence 22 123333332 4557999999999999997764
No 171
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.55 E-value=2.3e-13 Score=85.10 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=96.4
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
..++..|..+++++++.|..|+||++..++....++ .|++....+...|.|.++++.+.|.++.++|+.+++++...
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 467889999999999999999999999999988886 45677889999999999999999999999999999887665
Q ss_pred cCC---CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 79 QLP---DRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 79 ~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
..+ ++.+.|.++-++|++.+.||-|.+|.+.
T Consensus 680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 543 5788999999999999999999999874
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=85.88 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=85.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH---- 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~---- 76 (112)
|..++|.|||..++.+.. ..+.+||.+.+..+.++++|...|.|++|+.+|+.+++|+.|..+.+|..+-...++
T Consensus 15 i~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~ 93 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHN 93 (1081)
T ss_pred hheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccC
Confidence 567999999999888775 468999999999999999999999999999999999999999999999865332110
Q ss_pred ------Eec----------------------------C--CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 77 ------TQQ----------------------------L--PDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 77 ------~~~----------------------------~--~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
.+. . .+.+.+|..+|.+++.|-.||+|.+-+
T Consensus 94 D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 94 DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 000 0 112456677899999999999998864
No 173
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.54 E-value=7.2e-14 Score=82.89 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=84.4
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-----
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP----- 74 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~----- 74 (112)
..+.|+.+...++.+..=|...+||.++.+. ...+..|...|..++++| ...++++++.|++.++||++.-..
T Consensus 283 s~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ 362 (498)
T KOG4328|consen 283 SSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF 362 (498)
T ss_pred eeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence 3456676666666777667899999998776 445566778999999999 666889999999999999986432
Q ss_pred eEE--ecCCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 75 VHT--QQLPDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 75 ~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
+.. +...+.+..|+|.+-.+++.+.|..|++||.
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 222 2335678899998888999999999999997
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.9e-13 Score=77.94 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=79.5
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEE-----------
Q 045566 11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHT----------- 77 (112)
Q Consensus 11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~----------- 77 (112)
..++++..+|.|++||..+++.+..+++++..+..+.|.. .+..+.+++.||+|++||+|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3578888899999999999999999999999999999987 456788999999999999875421100
Q ss_pred -------------------------------------------ecCCCeEEEEeeC-CCEEEEEeCCCcEEEEECcCC
Q 045566 78 -------------------------------------------QQLPDRCYALTVR-YPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 -------------------------------------------~~~~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+.-.++.+.|+|+ .+.|++|+.||-|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 0112357888885 568889999999999998753
No 175
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=2.7e-14 Score=84.99 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=94.8
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce---EEec
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HTQQ 79 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---~~~~ 79 (112)
-+.|-|---+|++++..|.++.-|+.+++.+..+....+.+..+..+|-...+-+|..+|+|.+|......++ ..+.
T Consensus 214 rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 214 RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 3556666667889999999999999999998888777788888889998788889999999999999887755 4567
Q ss_pred CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++.+++++++|.++++.+.|..++|||+|+.
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccc
Confidence 78899999999999999999999999999975
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=1.7e-13 Score=77.69 Aligned_cols=105 Identities=20% Similarity=0.404 Sum_probs=81.1
Q ss_pred eEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCC-ceEE
Q 045566 3 CSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPN-PVHT 77 (112)
Q Consensus 3 ~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~-~~~~ 77 (112)
+-+|+| +++.+++.+ |+++..||+++.+....+ ..|...|..+.|+|+-+ ++++++.|+.|++||.+..+ ++..
T Consensus 175 sg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred ccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 457888 778887765 689999999987776655 46888899999999554 67899999999999998654 4555
Q ss_pred ecCCC---eEEEEeeC-CCEEEEEeCCCcEEEEEC
Q 045566 78 QQLPD---RCYALTVR-YPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 78 ~~~~~---~~~~~~~~-~~~~~~~~~d~~v~~~d~ 108 (112)
+..+. -++.|+|. .+++++++.|..|.+|..
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 54432 45667664 567899999999998854
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.53 E-value=2.8e-12 Score=76.26 Aligned_cols=111 Identities=26% Similarity=0.478 Sum_probs=90.1
Q ss_pred CeeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceE-E
Q 045566 1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVH-T 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~-~ 77 (112)
|..++|+|++..++.++. ++.+++|+.........+..|...+.+++|+|++. .+++++.|+.+.+||......+. .
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~ 237 (466)
T COG2319 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237 (466)
T ss_pred EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence 357899999998888885 99999999988777778888999999999999887 55555899999999988666655 3
Q ss_pred ecCCCe--EEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 78 QQLPDR--CYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+..+.. ...|++++..+++++.|+.+++||++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 238 LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred cCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 433322 2268888888889999999999998754
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.4e-14 Score=90.88 Aligned_cols=111 Identities=23% Similarity=0.355 Sum_probs=84.3
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCCceE
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVH 76 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~~~~ 76 (112)
|..+.|++ +++.|++|+.||.|.|||+...+..... ....+.|.+++|+.. ...|++++.++...+||++..+.+-
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 56789999 5569999999999999999876655444 224578999999984 4567788889999999999987775
Q ss_pred EecC-----CCeEEEEeeCC-CEEEEEeCCC---cEEEEECcCC
Q 045566 77 TQQL-----PDRCYALTVRY-PLMVVGTADR---NLVVFNLQNP 111 (112)
Q Consensus 77 ~~~~-----~~~~~~~~~~~-~~~~~~~~d~---~v~~~d~~~~ 111 (112)
.+.. ....+.|+|+. ..+++++.|. .|.+||+|..
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 5543 24578899975 4566666543 4889998753
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=6.8e-14 Score=81.89 Aligned_cols=108 Identities=22% Similarity=0.331 Sum_probs=87.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcC--------C-----CC---CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL--------S-----GG---QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 64 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~--------~-----~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i 64 (112)
|+++.|+|+|..+++|+.++.+.+|-.. + .+ ....+.+|...+..++|+|++.++++++.|..+
T Consensus 68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~ 147 (434)
T KOG1009|consen 68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSV 147 (434)
T ss_pred eEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceE
Confidence 5789999999999999999999999765 2 11 112345788999999999999999999999999
Q ss_pred EEeeCCCCCceEEecCC---CeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 65 KYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 65 ~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
++||+..++.......+ +...+|+|...++++-+.|...+.+.+
T Consensus 148 ~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 148 RLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred EEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence 99999999877665443 467888888888888888876665543
No 180
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.51 E-value=1.3e-12 Score=78.80 Aligned_cols=104 Identities=15% Similarity=0.230 Sum_probs=86.4
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe--cC
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ--QL 80 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~--~~ 80 (112)
.++.+|+.+++++++.|+.+++|+ ..++..+.. -..+..|+.|+|.+ .++.|...|...+.|.++...+..+ ..
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~ 448 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNE 448 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCC
Confidence 467889999999999999999999 444444333 45678999999999 9999999999999999886655433 45
Q ss_pred CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 81 PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
+...+.++|+|.++++|+.|+.|++|-+..
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 668899999999999999999999997654
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=5.1e-14 Score=78.79 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=65.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~ 69 (112)
|..+.+-||++.+|+++.|+.+++|+-++.+++..+..|.+.|.+++|+|+...+++++.|..|.+|++
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 346778899999999999999999999999999999999999999999999999999999999999986
No 182
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=79.33 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=89.8
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCC----CCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc--
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSG----GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-- 74 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~-- 74 (112)
.++.|...++.++.|+.+|.|..+|++.. ........|.+.|+++..-. +++.+++.+.+|.|.+||++..++
T Consensus 256 fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~ 335 (425)
T KOG2695|consen 256 FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK 335 (425)
T ss_pred HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc
Confidence 35567777899999999999999999865 23345556899999998877 788999999999999999998776
Q ss_pred -eEEecCCCeE-----EEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 75 -VHTQQLPDRC-----YALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 75 -~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+..++.+++. ..+++....+++++.|...+||.++.++
T Consensus 336 ~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 336 SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 7777776643 3445566788889999999999998653
No 183
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=3.3e-12 Score=75.71 Aligned_cols=110 Identities=21% Similarity=0.337 Sum_probs=86.0
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC-CceEE
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP-NPVHT 77 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~-~~~~~ 77 (112)
|.++.|+| ....|++|+.|++|.+.|.+........-...+.|..++|.| ....++++..||.++-+|.|+. +++..
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 57899999 567899999999999999986443332223567889999999 5567788889999999999986 55554
Q ss_pred e---cCCCeEEEEeeC-CCEEEEEeCCCcEEEEECcC
Q 045566 78 Q---QLPDRCYALTVR-YPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 ~---~~~~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~ 110 (112)
. ..++..++++.. ...+.+++.|+.|++|++.-
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 4 456677888765 45788899999999998753
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.4e-12 Score=81.24 Aligned_cols=110 Identities=11% Similarity=0.229 Sum_probs=92.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC----CCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS----GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV- 75 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~- 75 (112)
++|.+++|.+++++++..||.|.+|.-.. ......+..|...|.++.|+++|.++.+|+..+.+-+|.+.++++.
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 46899999999999999999999996433 1234567889999999999999999999999999999999887632
Q ss_pred -EEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 76 -HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
..+..++..+.++|++........|..|.+....+
T Consensus 288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 34455677888999999999999999998876543
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.3e-12 Score=72.76 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=49.0
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCe---EEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.|+++...|...-++.++.|+.++-||+++++..+.++.+.. ++........+++|+.||++++||.++++
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc
Confidence 455666666444455555788888888888877777766542 22332345579999999999999999864
No 186
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.48 E-value=3.4e-13 Score=82.94 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCC------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-----
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQ------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT----- 77 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~----- 77 (112)
..+.|+.+.++|.|.++|...... ......|...|..+.|.|....|++...|.++++||+++.+....
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 346889999999999999765432 234467999999999999777899999999999999998775533
Q ss_pred ecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcC
Q 045566 78 QQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~ 110 (112)
+...+.+++|.+.. ..+++|+.||.+.|||++-
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 34456788998855 5778899999999999874
No 187
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.44 E-value=4.7e-12 Score=78.65 Aligned_cols=109 Identities=20% Similarity=0.324 Sum_probs=84.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--Cc
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NP 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~ 74 (112)
|+-++|+|++++|++.+.|.++.+|....... ....+.|...|....|+|++.+|+|++.|..|.+|..... +.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 56799999999999999999999998743322 1235678899999999999999999999999999988766 33
Q ss_pred eEE-----ecCCCeEEEEee-----CCCEEEEEeCCCcEEEEECc
Q 045566 75 VHT-----QQLPDRCYALTV-----RYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 75 ~~~-----~~~~~~~~~~~~-----~~~~~~~~~~d~~v~~~d~~ 109 (112)
+.. +...++.+++.+ .+..+++|-..|.|.+|...
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 322 233445566554 23367888889999999854
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=73.02 Aligned_cols=107 Identities=21% Similarity=0.378 Sum_probs=82.3
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
.++.+.+.-..=++|+.+..+..|++..... ..++.-....+..+...||++.+++++.|+.|++|+.++.+++..
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 4556665433345667777788888764321 113334456788999999999999999999999999999887654
Q ss_pred e---cCCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 78 Q---QLPDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 78 ~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
+ ...+.+++|+|+.+.++.++.|++|.+|++
T Consensus 289 LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 4 456789999999999999999999999986
No 189
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=7.7e-11 Score=67.67 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=64.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQ-VKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|.|++.+.+|..+|+++..|+ |++||..+++.+.++. .....+.+++|+|+..+++.++..|++.++.++.
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 578999999999999999997 6899999999998886 3456799999999999999999999999998764
No 190
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.41 E-value=2.8e-11 Score=73.28 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=86.2
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eE---E
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VH---T 77 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~---~ 77 (112)
.|+.|+|.| .++.|...|...+.|.++... .++....+++++++|+|+|.+++.|+.|+.|++|.+..... .. .
T Consensus 411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred eEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 588999999 999999999999999887444 44444488999999999999999999999999998865432 21 1
Q ss_pred e-cCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 78 Q-QLPDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
+ ..++..+.|+++++++.+-+.|-.|..|.
T Consensus 489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 489 CSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 1 14567889999999999999999999994
No 191
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=4.1e-12 Score=77.72 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=84.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe------ecc-----CCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA------MHD-----APIKEVAWIPEMNLLATGSWDKTLKYWDT 69 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~------~~~-----~~v~~~~~~~~~~~~~~~~~~~~i~~w~~ 69 (112)
++++..++...+|++|+.+|.|..||.+....+.++. .+. ..|+++.|+.+|-.++.|..+|.+.+||+
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 4678888888899999999999999998776655442 122 24899999999999999999999999999
Q ss_pred CCCCceEEe----cCCCeEEEEeeCCC-EEEEEeCCCcEEEEECcCCC
Q 045566 70 RQPNPVHTQ----QLPDRCYALTVRYP-LMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 70 ~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~ 112 (112)
++.+++..- ..++..+.|.+.+. -.+.......++|||-.+|+
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 998876433 34566677765532 23333445678999987764
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=1.8e-10 Score=67.26 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=61.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCcEEEee--ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQ-VKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
+.|++|+++|.+||++++.|+ |+++.+.+++.+.+++. ....|.+++|+|+++++.+.+..++|.++.+.
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 468999999999999999997 68999999998888753 24568899999999999999999999999764
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.39 E-value=2.7e-11 Score=69.89 Aligned_cols=109 Identities=16% Similarity=0.257 Sum_probs=82.6
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCcE---EE----eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS-GGQPV---TV----AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP 72 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~---~~----~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~ 72 (112)
.+++|+|||.+|+.|- +..|+++|+.. +.... ++ .+..+.+.|++|+| +...++.++....+-++.-...
T Consensus 162 hsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 162 HSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred eeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 5899999999998665 57999999943 33211 11 13357789999999 6668888888888777766666
Q ss_pred CceEEe---cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566 73 NPVHTQ---QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQNP 111 (112)
Q Consensus 73 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~ 111 (112)
.++..+ ...++.++|.++|+.+++|.. +-.|..||+|..
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 555444 456789999999999999876 678999999863
No 194
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.8e-12 Score=78.19 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=85.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee------CCCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD------TRQPN 73 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~------~~~~~ 73 (112)
|..++.+|.|.-|+.++.|+.+..+|+.-. ++..++..|...++.++|++.-.+|++|+.|+.+.++. +....
T Consensus 610 iS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp 689 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP 689 (733)
T ss_pred eeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence 467899999999999999999999998754 45567888999999999999999999999999999884 22222
Q ss_pred c---eEEecCC-------CeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566 74 P---VHTQQLP-------DRCYALTVRYPLMVVGTADRNLVVF 106 (112)
Q Consensus 74 ~---~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~v~~~ 106 (112)
. +..+..+ +-...|+|...++++++.||+|++|
T Consensus 690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 2222222 2345699999999999999999998
No 195
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.39 E-value=2.5e-11 Score=73.47 Aligned_cols=111 Identities=14% Similarity=0.278 Sum_probs=90.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceE--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVH-- 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~-- 76 (112)
|+++.++-...+||+++..|.|.+..+.++....++... ...|.-+.|+|..+ ++.+++.+|.|.+||+....++.
T Consensus 124 vt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 124 VTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred eEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 578889888999999999999999999888877766533 45567889999554 66788999999999998877664
Q ss_pred --EecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566 77 --TQQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 77 --~~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+..+...++|+|.. .++++.+.|.+|.+||.+..
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 345677889999965 46778899999999998753
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=5.7e-11 Score=68.73 Aligned_cols=109 Identities=19% Similarity=0.318 Sum_probs=80.6
Q ss_pred eEEEcCCCCEEEEEcC----CCcEEEEEcCCCCC-cEEE-eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-
Q 045566 3 CSTWKDDGTTVFSGGC----DKQVKMWPLLSGGQ-PVTV-AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP- 74 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~----~~~v~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~- 74 (112)
|++.+-.++.+++|.+ +-.|.+||.+..+. +..+ ..|...|+++.|+| +...+++|+.||.+.++|++....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 3333335667777753 66799999998776 4433 57999999999999 788999999999999999976531
Q ss_pred ---eEEe--cCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566 75 ---VHTQ--QLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 75 ---~~~~--~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~ 111 (112)
...+ ...+..+.|...+ ..+.+-+......+|+++.+
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 1222 2234566776554 46888889999999998865
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.35 E-value=1.2e-11 Score=76.71 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=83.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCC--CceE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLL-SGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP--NPVH 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~--~~~~ 76 (112)
|.++.++|=+..++..+.|-.+++|... ...++..+..+...+++++|+| ....|+++..+|.+.+||+... .++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 4678888866555544448999999977 5666666666777799999999 5668888999999999999654 3333
Q ss_pred EecC---CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 77 TQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.... ......+++++..+++|...|.+.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3322 224566777899999999999999999853
No 198
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.1e-11 Score=69.11 Aligned_cols=106 Identities=17% Similarity=0.402 Sum_probs=78.1
Q ss_pred eeEEEcCC---CCEEEEEcCC-----CcEEEEEcCCCC----CcEEEeeccCCeeEEEEccC----CCEEEEeeCCCcEE
Q 045566 2 LCSTWKDD---GTTVFSGGCD-----KQVKMWPLLSGG----QPVTVAMHDAPIKEVAWIPE----MNLLATGSWDKTLK 65 (112)
Q Consensus 2 ~~~~~~~~---~~~l~~~~~~-----~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~i~ 65 (112)
.|+.|+|. ...|++|+.+ +.+.||...... .+.++..|..+|+.++|.|+ ..++++++.|| |+
T Consensus 173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~ 251 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR 251 (361)
T ss_pred eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence 47889883 4678888765 478888765443 34467899999999999993 34788999999 99
Q ss_pred EeeCCCCC-----------------ce---EE---ecCCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 66 YWDTRQPN-----------------PV---HT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 66 ~w~~~~~~-----------------~~---~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
+|.++... .+ .. +...+-.+.|+-.|..|.+.+.||.|++|..
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99987421 11 11 1223456777778999999999999999953
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=8.8e-11 Score=68.67 Aligned_cols=107 Identities=14% Similarity=0.265 Sum_probs=80.8
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC------------cE--EEeeccCCeeEEEEccCCCEEEEeeC-CCcE
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ------------PV--TVAMHDAPIKEVAWIPEMNLLATGSW-DKTL 64 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~------------~~--~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i 64 (112)
|+|++|-| .+.-|++|+..| |.+|....... .. .-++| .+|++++|.+||..+++++. +..|
T Consensus 143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi 220 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI 220 (445)
T ss_pred eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence 57999999 566788888754 77997642111 11 12233 68999999999999988774 7789
Q ss_pred EEeeCCCCCceEEe--c-CCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 65 KYWDTRQPNPVHTQ--Q-LPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 65 ~~w~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.+||+.++..+... . ....-+.|+|++.+++++..|+..++|+..
T Consensus 221 ~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred EEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 99999988765433 2 234678999999999999999999999644
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.33 E-value=5.2e-10 Score=66.61 Aligned_cols=110 Identities=25% Similarity=0.453 Sum_probs=84.5
Q ss_pred CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eEE
Q 045566 1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VHT 77 (112)
Q Consensus 1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~~ 77 (112)
|.+++|+|++. .+++++.|+.+++||...+.... .+..|.... -..|++++..+++++.++.+++|+.+.... ...
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 46789999888 55555999999999887666655 466676664 337999888888999999999999987664 333
Q ss_pred e---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 78 Q---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 78 ~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. ........+.|++..+++++.|+.+.+||.++.
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 3 234456688888888888888988999988764
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.33 E-value=9.8e-11 Score=66.79 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCC------------------------------------------------
Q 045566 1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGG------------------------------------------------ 31 (112)
Q Consensus 1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~------------------------------------------------ 31 (112)
|..++|...+ ..+++.+.||.|++||++..+
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 4678898855 477899999999999986321
Q ss_pred CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc------eEE--ecCCCeEEEEeeC-CCEEEEEeCCC
Q 045566 32 QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP------VHT--QQLPDRCYALTVR-YPLMVVGTADR 101 (112)
Q Consensus 32 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~------~~~--~~~~~~~~~~~~~-~~~~~~~~~d~ 101 (112)
++.++..|++.|+.++|.| ...++++++.|....+||+.+... +.. ....+.-+.|++. +.+++.+. +.
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~k 357 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GK 357 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cC
Confidence 1223456899999999999 678999999999999999875322 222 2334567788754 45666554 33
Q ss_pred cEEE
Q 045566 102 NLVV 105 (112)
Q Consensus 102 ~v~~ 105 (112)
.+.+
T Consensus 358 klei 361 (364)
T KOG0290|consen 358 KLEI 361 (364)
T ss_pred eeeE
Confidence 4443
No 202
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.6e-10 Score=69.60 Aligned_cols=105 Identities=13% Similarity=0.265 Sum_probs=82.0
Q ss_pred CeeEEEcCCCCEEEEE--cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCCce
Q 045566 1 VLCSTWKDDGTTVFSG--GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPV 75 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~ 75 (112)
|.++.|+|+++-++++ -.-..+.++|++ ++++..+ .+++-+++-|+|.|.+++.++. .|.|.+||+.+.+.+
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 6789999999877654 456679999965 4444333 4567788999999998877654 588999999998888
Q ss_pred EEecCC-CeEEEEeeCCCEEEEEeC------CCcEEEEEC
Q 045566 76 HTQQLP-DRCYALTVRYPLMVVGTA------DRNLVVFNL 108 (112)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~------d~~v~~~d~ 108 (112)
..+... .+...|+|+|++++++.. |..++||+.
T Consensus 350 ~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 350 AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 887764 466789999999999865 677889975
No 203
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1e-10 Score=71.32 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=59.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC----------CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG----------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
|.|++..+++..+++|+.||+|+.|++.... ....+.+|.+.+..+++++....+++++.||+++.|+..
T Consensus 347 Vl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 347 VLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 5789999999999999999999999765221 123567899999999999988889999999999999764
No 204
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=2.9e-10 Score=64.89 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=81.1
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-eE-
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-VH- 76 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~-~~- 76 (112)
.++.|++.+..++++..+|.+.+-+..... ..+..+.|+-+.....|+. +.+.+.+|+.|+.+..||+|.++. +.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 367899999999999999999854433322 2346678888888888887 667889999999999999995442 22
Q ss_pred ---EecCCCeEEEEe-eCCCEEEEEeCCCcEEEEECcCC
Q 045566 77 ---TQQLPDRCYALT-VRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 77 ---~~~~~~~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+...+.++.-+ |.+.++++|+.|..|++||.|+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 122233333333 35679999999999999999953
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.29 E-value=6.8e-10 Score=65.68 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=76.4
Q ss_pred eeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCC----cEEEeeccCCeeEEEEccCCCEEEEe-eCCCcEEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQ----PVTVAMHDAPIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~w~~~~~~~~ 75 (112)
..++++|+++++++++. ++.+.+|++.+... ...+. .......++++|++++++++ ..++.|.+||+.+...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 35889999998887764 78899999864322 11222 22345778899999887554 45799999999764322
Q ss_pred E-------Ee--cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566 76 H-------TQ--QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN 110 (112)
Q Consensus 76 ~-------~~--~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~ 110 (112)
. .. ......+.|+|+++++++.+. ++.|.+||+..
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 1 11 112356899999999988876 88999999863
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.29 E-value=4.3e-11 Score=73.12 Aligned_cols=105 Identities=16% Similarity=0.306 Sum_probs=75.9
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL- 80 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~- 80 (112)
.|-.|+|+|.-|+++++||.|++|. +++-...++.....+|.|++|.|+...++-+. .+.+.+=.+.....+-..+.
T Consensus 108 ~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAH 185 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAH 185 (737)
T ss_pred hhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEecc
Confidence 4668999999999999999999998 44544444555678899999999776655443 34455444443333322222
Q ss_pred --CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 81 --PDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
-+-++.|++..+.+++|+.|-+.++||-
T Consensus 186 DGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred CcEEEEeecCccccceeecCCceeEEeecc
Confidence 3356778888899999999999999984
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2.6e-10 Score=66.76 Aligned_cols=98 Identities=13% Similarity=0.274 Sum_probs=75.1
Q ss_pred CeeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ce--E
Q 045566 1 VLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PV--H 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~--~ 76 (112)
|++++|++||..+++++- +..+++||..++..........+.++-+.|+|++..++++.-|+..++|...... .. .
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~ 277 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI 277 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee
Confidence 678999999999999875 5689999998887655544566788899999999999999999999999654322 11 1
Q ss_pred EecCCCeEEEEeeCCCEEEEEe
Q 045566 77 TQQLPDRCYALTVRYPLMVVGT 98 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (112)
.....+...+|+|+|+.++...
T Consensus 278 lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 278 LGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred ccCCceeeeeecCCCCEEEEEE
Confidence 1233556788999998665543
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.9e-10 Score=70.71 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=84.0
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--- 80 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~--- 80 (112)
++++.-..-|..++....|.-+++..+..+..+....+.+.++..++...++++|+.+|.|.+||.+....+..+..
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~ 218 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS 218 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc
Confidence 34443222344444446788888888888888877778999999999888999999999999999988765544321
Q ss_pred -----------CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 -----------PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 -----------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++++.|.-+|-.+++|..+|.+.|||+|+.
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 2467888888999999999999999999975
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=9.8e-10 Score=67.20 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=71.5
Q ss_pred CeeEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEe--eCCCCCc
Q 045566 1 VLCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYW--DTRQPNP 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w--~~~~~~~ 74 (112)
+.+.+|+|+|+.++..+.+ ..|.+||+.+++... +..........+|+|+|+.++.+. .++.+.+| |+.+++.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 3567999999999887543 469999987765422 222223345689999999887654 57765555 6655443
Q ss_pred eEEe--cCCCeEEEEeeCCCEEEEEe-CCCcEEEEECc
Q 045566 75 VHTQ--QLPDRCYALTVRYPLMVVGT-ADRNLVVFNLQ 109 (112)
Q Consensus 75 ~~~~--~~~~~~~~~~~~~~~~~~~~-~d~~v~~~d~~ 109 (112)
.... ........|+|+++.++..+ .++...+|++.
T Consensus 285 ~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 2221 22345788999999776554 56778888754
No 210
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.26 E-value=2.7e-11 Score=49.85 Aligned_cols=37 Identities=41% Similarity=0.708 Sum_probs=34.2
Q ss_pred CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566 32 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 32 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~ 68 (112)
+..++.+|...|.+++|+|++.++++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567889999999999999999999999999999997
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.6e-10 Score=67.65 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=88.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-ceEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHT 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~~~~ 77 (112)
|.|++|+..++++++|..+++|...|+.+.+.+.... ...+.|..+..+|..+.+++.+.++.|.+||.+..+ ++..
T Consensus 108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred eEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 5789999999999999999999999999888766553 234589999999988899999999999999998765 2222
Q ss_pred e---cC--CCeEEEEeeCC-CEEEEEeCCCcEEEEECcCCC
Q 045566 78 Q---QL--PDRCYALTVRY-PLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 ~---~~--~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+ .. .-...-|+|.. .++++.+..+.+.+||.+.++
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence 1 11 22456677754 577888889999999998763
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=4.6e-10 Score=74.00 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=78.3
Q ss_pred eEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC-------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--
Q 045566 3 CSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ-------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-- 72 (112)
Q Consensus 3 ~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-- 72 (112)
.++.++ ++.++++|+.||+|++|+.+.... ..++......+.++.+.+.+..++.++.||.|.+.++...
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 344455 568999999999999999864321 2233445678899999999999999999999999877541
Q ss_pred Cc-----------------eEE--e-------------------------------------cCCCeEEEEeeCCCEEEE
Q 045566 73 NP-----------------VHT--Q-------------------------------------QLPDRCYALTVRYPLMVV 96 (112)
Q Consensus 73 ~~-----------------~~~--~-------------------------------------~~~~~~~~~~~~~~~~~~ 96 (112)
+. +.. + .+-+++++.+|.+.+++.
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 10 000 0 001246788888889999
Q ss_pred EeCCCcEEEEECc
Q 045566 97 GTADRNLVVFNLQ 109 (112)
Q Consensus 97 ~~~d~~v~~~d~~ 109 (112)
|+..|.+.+||+|
T Consensus 1213 Gts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLR 1225 (1431)
T ss_pred ecCCceEEEEEee
Confidence 9999999999987
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.26 E-value=1.2e-09 Score=64.59 Aligned_cols=108 Identities=9% Similarity=0.156 Sum_probs=75.0
Q ss_pred eeEEEcCCCCEEEEEcC-CCcEEEEEcCCC--CC--cEEEeec------cCCeeEEEEccCCCEEEEeeC-CCcEEEeeC
Q 045566 2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSG--GQ--PVTVAMH------DAPIKEVAWIPEMNLLATGSW-DKTLKYWDT 69 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~--~~--~~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~ 69 (112)
..+.|+|++++++++++ ++.|.+|++... +. ...+... ......+.++|++++++++.. ++.|.+|++
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 35789999999988876 899999998742 21 2222211 112235889999998888754 788999998
Q ss_pred CCCCc----eEEecC--CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566 70 RQPNP----VHTQQL--PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ 109 (112)
Q Consensus 70 ~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~ 109 (112)
..... +..... ....+.++|+++++++++. ++.|.+|++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 65431 122111 2357889999999998776 8899999764
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.9e-10 Score=67.14 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=83.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE--------------------------------------EE--e-ec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--------------------------------------TV--A-MH 39 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~~--~-~~ 39 (112)
|.++.|+|||++|++-+.| ..++|+..++..+. .+ . .+
T Consensus 189 V~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 189 VKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred cccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 5689999999999999998 89999987651110 00 0 01
Q ss_pred -------------cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC----CCeEEEEeeCCCEEEEEeCCCc
Q 045566 40 -------------DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----PDRCYALTVRYPLMVVGTADRN 102 (112)
Q Consensus 40 -------------~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~ 102 (112)
...+++++.+++|++++.|+.+|.|.+++..+.+.++..+. -++.+.|.|+.+.+++.+.+.+
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 23788999999999999999999999999988776654433 4578999999998888888887
Q ss_pred EEEEEC
Q 045566 103 LVVFNL 108 (112)
Q Consensus 103 v~~~d~ 108 (112)
..+..+
T Consensus 348 ~~v~~l 353 (398)
T KOG0771|consen 348 AAVTKL 353 (398)
T ss_pred eeEEEE
Confidence 776544
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.25 E-value=1.4e-09 Score=65.31 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=75.9
Q ss_pred CEE-EEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC--eEEEE
Q 045566 11 TTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYAL 87 (112)
Q Consensus 11 ~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~--~~~~~ 87 (112)
+++ ++-..++.|.+.|..+.+.+.++......-..+.++|+++++...+.|+.+.++|+.+.+.+....... ..+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 344 455678999999999988888887544443457789999999989999999999999999888876644 56888
Q ss_pred eeCCCEEEEEe-CCCcEEEEECcCCC
Q 045566 88 TVRYPLMVVGT-ADRNLVVFNLQNPQ 112 (112)
Q Consensus 88 ~~~~~~~~~~~-~d~~v~~~d~~~~~ 112 (112)
+++|+++++++ ..+.+.++|.++.+
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--
T ss_pred cCCCCEEEEEecCCCceeEecccccc
Confidence 99999998876 47889999988754
No 216
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=9.8e-11 Score=75.45 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=87.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|.++.|+.+|+++++.++|..+++|++.+.+... ..-+|...+..+.|.|. .+++++.|-+.++|+....+ +..+.
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~ 254 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYD 254 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhhh
Confidence 3567888899999999999999999999887665 66789999999999988 89999999999999664332 22332
Q ss_pred C----CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 80 L----PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 80 ~----~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
. ....+...+....+++++.|+.+++||+..
T Consensus 255 ~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 255 EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 2 345677778888999999999999998754
No 217
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.23 E-value=2e-10 Score=67.56 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=66.0
Q ss_pred cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC----CeEEEEeeCCCEEEE
Q 045566 21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVV 96 (112)
Q Consensus 21 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 96 (112)
.+.+|.... .+...+.+|-+-++.++++||+++++++..|..|++-.....-.+..+... +..+++-++ ..|++
T Consensus 133 ~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS 210 (390)
T KOG3914|consen 133 SFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLS 210 (390)
T ss_pred eeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeee
Confidence 334444333 334455678899999999999999999999999999877666555544332 344555444 45899
Q ss_pred EeCCCcEEEEECcCCC
Q 045566 97 GTADRNLVVFNLQNPQ 112 (112)
Q Consensus 97 ~~~d~~v~~~d~~~~~ 112 (112)
++.|+++++||+++++
T Consensus 211 ~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGK 226 (390)
T ss_pred cCCCCcEEEEecccCC
Confidence 9999999999999875
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=4.2e-10 Score=73.46 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=76.9
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc---eEE-
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP---VHT- 77 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~---~~~- 77 (112)
+.|..+..+|.+++.-..|+|||.........++ +....++++.-+- .|..+++|..||.+++||.+.... +..
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 4576655666666667899999988776666554 3344566655443 578999999999999999986543 222
Q ss_pred --ecCC--CeEEEEeeCCC-EEEEEeCCCcEEEEECcC
Q 045566 78 --QQLP--DRCYALTVRYP-LMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 --~~~~--~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~ 110 (112)
+... +..+.+.++|- .+++|+.||.|++||+|.
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 2222 44566666654 499999999999999997
No 219
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.8e-11 Score=73.53 Aligned_cols=106 Identities=22% Similarity=0.363 Sum_probs=86.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-Cc---eE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NP---VH 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~---~~ 76 (112)
|.++.|+|...+|++++. ..|++||+........+......+.+++.+|.|..++.++.|+.+..+|+.-. ++ ++
T Consensus 569 vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr 647 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR 647 (733)
T ss_pred eeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh
Confidence 467899999999999887 57999999876555555545567889999999999999999999999998644 33 33
Q ss_pred EecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 77 TQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
.+....+.+++++..+++++|+.|+.+.++.
T Consensus 648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 4445568899999999999999999998873
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.2e-09 Score=65.11 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=75.1
Q ss_pred eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCc--EEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKT--LKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~--i~~w~~~~~~~~ 75 (112)
.+.+|+|+|+.|+..+. +..|.+||+.+++. ..+......+....|+|+|+.++ +...++. |.+||+.+++..
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 56789999998877653 46899999977654 34444556677889999998765 4455544 777788776543
Q ss_pred EEec--CCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566 76 HTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP 111 (112)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~ 111 (112)
.... .......|+|+++.++..+. ++ .|+++|+..+
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 3222 22356789999998877664 33 5777887654
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.1e-09 Score=70.91 Aligned_cols=102 Identities=12% Similarity=0.184 Sum_probs=82.2
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----EecCC
Q 045566 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----TQQLP 81 (112)
Q Consensus 6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~----~~~~~ 81 (112)
++++.-++++|+--+.+.+|.....+....+.+|++.+..+.++.+|.++++.++|+.+++|++.+.+... .+.+.
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence 44555678889999999999987555555788999999999999999999999999999999998876554 12223
Q ss_pred CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 82 DRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+-..++.|+ .+++++.|.+.++|+..
T Consensus 221 vw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 221 VWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred eEEEEeccc--eeEEeccceEEEEEecc
Confidence 345566666 89999999999999543
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.3e-09 Score=66.71 Aligned_cols=104 Identities=10% Similarity=0.098 Sum_probs=71.4
Q ss_pred eeEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe-c
Q 045566 2 LCSTWKDDGTTVFSG-GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-Q 79 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-~ 79 (112)
...+|+|+|+.++.. ..++...+|++...........+.. ....|+|+++.++..+.++ +..||+.+++..... .
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~ 371 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST 371 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC
Confidence 467899999977655 4577888887654322222223332 4578999999988777654 556899877643221 1
Q ss_pred CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 80 LPDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
.......|+|+++.++.++.++...+|++
T Consensus 372 ~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 372 FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 23355789999999999999998888765
No 223
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=2.1e-10 Score=64.53 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=79.1
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce--
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV-- 75 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~-- 75 (112)
|.+++-+| +.+.+++|+.+|.+.+||.+....+. .+..|+.++..+-|+| ++..+++++.||.+..||-.+.-.-
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~ 261 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSIS 261 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEec
Confidence 45677788 56678889999999999998775443 4578999999999999 7889999999999999997632100
Q ss_pred ---------------EE-ec----CCC---eEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 76 ---------------HT-QQ----LPD---RCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 76 ---------------~~-~~----~~~---~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
+. +. .+. ....|+--|..+++|+.-+.|++++
T Consensus 262 ~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 262 NQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 00 00 011 2334556688899999888888864
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.6e-09 Score=70.87 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCC--eeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCce--EEec-
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAP--IKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPV--HTQQ- 79 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~--v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~--~~~~- 79 (112)
.|+.++.|..||.|++||.+...+ +...+.|... |..+.+.+.|- .+++|+.+|.|++||++..... ....
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 578999999999999999876543 3455667665 89999988654 5999999999999999874211 1111
Q ss_pred ----C-CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 80 ----L-PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 80 ----~-~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+ ..+++..++..+.+++|+. +.|.||++.
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 2 3678888999999999998 899999975
No 225
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=2.7e-10 Score=66.25 Aligned_cols=71 Identities=20% Similarity=0.428 Sum_probs=60.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
+.+++|.|....+++|..|..+.+||+...+-. ..+.+|...|..+...+--+.+++++.|+.|.+|+.+.
T Consensus 200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 468999999999999999999999998755443 46678888888888887778899999999999999863
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=8.7e-09 Score=63.14 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=71.7
Q ss_pred eeEEEcCCCCEEEEEc---CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe-eCCC--cEEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGG---CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDK--TLKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~--~i~~w~~~~~~~~ 75 (112)
.+.+|+|+|+.|+..+ .+..+.++++.+++.. .+...........|+|+|+.++.. ..++ .|.+||+.+++..
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 4689999999887653 3457889998766532 222233445568999999987754 3344 4888999876544
Q ss_pred EEec--CCCeEEEEeeCCCEEEEEeCC-Cc--EEEEECcCC
Q 045566 76 HTQQ--LPDRCYALTVRYPLMVVGTAD-RN--LVVFNLQNP 111 (112)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~d-~~--v~~~d~~~~ 111 (112)
.... .......|+|+++.++..+.+ +. |..+|+..+
T Consensus 281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 3322 234578899999988776654 34 444465543
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.8e-10 Score=70.64 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=65.8
Q ss_pred cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----eEEEEee--CCCEEEEEeCCCcEEEE
Q 045566 33 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTV--RYPLMVVGTADRNLVVF 106 (112)
Q Consensus 33 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~d~~v~~~ 106 (112)
..++.+|++.|.|++|+.+|.++++|+.|-.+.+||.-..+.++.+.... -+..|-| +.+++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34678999999999999999999999999999999998888777765433 3555666 46789999999999999
Q ss_pred ECcC
Q 045566 107 NLQN 110 (112)
Q Consensus 107 d~~~ 110 (112)
|+..
T Consensus 123 dl~~ 126 (758)
T KOG1310|consen 123 DLDS 126 (758)
T ss_pred eccc
Confidence 9875
No 228
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.15 E-value=2.4e-09 Score=66.84 Aligned_cols=91 Identities=16% Similarity=0.286 Sum_probs=69.0
Q ss_pred CcEEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc--e-------EEecCCCeEEEEee
Q 045566 20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP--V-------HTQQLPDRCYALTV 89 (112)
Q Consensus 20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~--~-------~~~~~~~~~~~~~~ 89 (112)
+.+.+|+++..............|+++.|+| ++.+++.|..+|.|.+||++.... . ..+..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4688999988755554455778999999999 778889999999999999987653 1 22333455666655
Q ss_pred CCC--EEEEEeCCCcEEEEECcC
Q 045566 90 RYP--LMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 90 ~~~--~~~~~~~d~~v~~~d~~~ 110 (112)
+.. -+++++.||.|..|+++.
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccc
Confidence 443 499999999999998764
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=3.2e-08 Score=60.72 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=70.7
Q ss_pred eEEEcCCCCEEEEE-cCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCc--EEEeeCCCCCceE
Q 045566 3 CSTWKDDGTTVFSG-GCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKT--LKYWDTRQPNPVH 76 (112)
Q Consensus 3 ~~~~~~~~~~l~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--i~~w~~~~~~~~~ 76 (112)
..+|+|+|+.|+.. +.++ .|.+||+.+++. ..+..+...+....|+|+++.++..+. ++. |..+++.+++...
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR 325 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE
Confidence 56899999988754 4344 588889876654 334334456788999999998866554 344 4444666554322
Q ss_pred Ee-c-CCCeEEEEeeCCCEEEEEeCC---CcEEEEECcCC
Q 045566 77 TQ-Q-LPDRCYALTVRYPLMVVGTAD---RNLVVFNLQNP 111 (112)
Q Consensus 77 ~~-~-~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~ 111 (112)
.. . .......|+|+++.++..+.+ ..+.+||+.++
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 21 1 123457889999988776543 34788898765
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.8e-08 Score=61.85 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=72.4
Q ss_pred eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCC--cEEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDK--TLKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~--~i~~w~~~~~~~~ 75 (112)
.+.+|+|+|+.++..+. +..+.+|++.+++.. .+...........|+|+|+.++ +.+.++ .|++||+.+++..
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT 285 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE
Confidence 45789999998887763 346999998766543 2333344455789999998765 444444 5999999876543
Q ss_pred EEec--CCCeEEEEeeCCCEEEEEeC-CCc--EEEEECcCC
Q 045566 76 HTQQ--LPDRCYALTVRYPLMVVGTA-DRN--LVVFNLQNP 111 (112)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~~--v~~~d~~~~ 111 (112)
.... .......|+|+++.++..+. ++. ++++|+.++
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 2211 12346789999998877664 444 666676554
No 231
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=6.3e-09 Score=66.40 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=82.5
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE----EeeccCCeeEEEEccCCCEEEEeeCCCcEEEee-CC------C
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT----VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD-TR------Q 71 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~-~~------~ 71 (112)
++.+++.|.+...... ..+.+|...++..... -..|.-.+++.+++|.+++++++..||.|.+|. +. +
T Consensus 165 ~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 5667777777666554 4577888766442111 123556689999999999999999999999994 33 2
Q ss_pred CCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 72 PNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
...++.+...+.++.|+++|.++++|+..+-+..|.+.+++
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 23455566678899999999999999999999999998864
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.09 E-value=3.6e-08 Score=59.39 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=73.0
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCCceEEecCC
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
.+.++|+|+++++++.|+.|.++|+.+.+.+.+++... ....++++++|++++.++ ..+.+.++|.++.+.+..+...
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 36789999999999999999999999999888876443 457899999999888775 5899999999998887766432
Q ss_pred ----------CeEEEEeeCCCEEE-EEeCCCcEEEEECcC
Q 045566 82 ----------DRCYALTVRYPLMV-VGTADRNLVVFNLQN 110 (112)
Q Consensus 82 ----------~~~~~~~~~~~~~~-~~~~d~~v~~~d~~~ 110 (112)
...+..++....++ ..-..+.|.+-|...
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 12344455655444 444456777777554
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.1e-08 Score=60.73 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=69.7
Q ss_pred eeEEEcCCCCEEE-EEcCCCcEEEEEcCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCcEEEeeC--CCCCceE
Q 045566 2 LCSTWKDDGTTVF-SGGCDKQVKMWPLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDT--RQPNPVH 76 (112)
Q Consensus 2 ~~~~~~~~~~~l~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~--~~~~~~~ 76 (112)
...+|+|+|+.++ +.+.++...+|.+.. ......+..+........|+|+|+.++..+. ++...+|.+ .+++...
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 3578999999876 457777766665432 2234444444445567889999998775543 455566644 4433222
Q ss_pred E-ecC-CCeEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566 77 T-QQL-PDRCYALTVRYPLMVVGTADR---NLVVFNLQNP 111 (112)
Q Consensus 77 ~-~~~-~~~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~ 111 (112)
. ... ......|+|+|++++..+.++ .|.+||+.++
T Consensus 323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 323 VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 1 121 123568999999988776554 5899998765
No 234
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=99.08 E-value=2.3e-09 Score=66.02 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=57.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|.|.+++|+...++.|+.||.|.+||...+.. ......-..+.++|+|+|..++.|+..|.+.+||+.-
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 56899999999999999999999999765433 2223445568999999999999999999999999753
No 235
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=8.8e-10 Score=64.92 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=64.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
++.++|+||+++++++..|..|++-.......+..+ .+|+..|..++.-++. .+++++.|+++++||..+++.++.+.
T Consensus 154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 467999999999999999999999877655544443 5799999999887654 58999999999999999998775543
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=4.4e-08 Score=60.19 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=71.2
Q ss_pred eEEEcCCCCEEEE-EcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCc--EEEeeCCCCCceE
Q 045566 3 CSTWKDDGTTVFS-GGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKT--LKYWDTRQPNPVH 76 (112)
Q Consensus 3 ~~~~~~~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--i~~w~~~~~~~~~ 76 (112)
+.+|+|+|+.++. .+.++ .|.+||+.+++. ..+..+........|+|+++.++..+. ++. +.++++.+++...
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 5689999987754 44444 588899876653 344444445567899999998776553 444 6666776654322
Q ss_pred E-ecC-CCeEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566 77 T-QQL-PDRCYALTVRYPLMVVGTADR---NLVVFNLQNP 111 (112)
Q Consensus 77 ~-~~~-~~~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~ 111 (112)
. ... ......|+|+++.++..+.++ .|.+||+.++
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 2 111 233578999999888765443 5889998765
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=2e-08 Score=61.55 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=68.9
Q ss_pred eeEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEe--eCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYW--DTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w--~~~~~~~~ 75 (112)
.+.+|+|+|+.++..+. ...+.+||+.+++.. .+...........|+|+|+.++ +.+.++...+| |+..+. .
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~ 276 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-L 276 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-c
Confidence 46789999998887653 346999999877653 3333445567889999998776 55667776666 444433 2
Q ss_pred EEec---CCCeEEEEeeCCCEEEEEeC-CCcEEEEEC
Q 045566 76 HTQQ---LPDRCYALTVRYPLMVVGTA-DRNLVVFNL 108 (112)
Q Consensus 76 ~~~~---~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~ 108 (112)
..+. .......|+|+++.++..+. ++...+|.+
T Consensus 277 ~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 277 RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 2222 22345789999998776554 455566643
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=5.6e-08 Score=59.61 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=70.5
Q ss_pred eeEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCC--cEEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDK--TLKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~--~i~~w~~~~~~~~ 75 (112)
...+|+|+|+.|+..+.+ ..|.+|++.+++.. .+....+......|+|+|+.++ +...++ .|.++|+.+++..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 467899999988765432 46888898766542 2332334455789999998776 444444 5888898876543
Q ss_pred EEe--cCCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566 76 HTQ--QLPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP 111 (112)
Q Consensus 76 ~~~--~~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~ 111 (112)
... ........|+|+++.++..+. ++ .|+++|+.++
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 221 122345689999987766554 33 4777777654
No 239
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=99.04 E-value=5.4e-08 Score=60.24 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=60.2
Q ss_pred eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE-EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH-TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
..+..+.+.+++|+...++.|+.||.|.+||...+.... ........++|+|+|..+++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 456789999999999999999999999999987653322 223345778999999999999999999999964
No 240
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.04 E-value=6.2e-09 Score=64.04 Aligned_cols=104 Identities=18% Similarity=0.383 Sum_probs=76.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce--EEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV--HTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~ 78 (112)
|.|++|.|+.+.++.|.. +++.+=.+.....+...+.|.+-|.++.|++....+++|+.|-..++||-...... ..+
T Consensus 148 v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ 226 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE 226 (737)
T ss_pred eEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChh
Confidence 579999998877766654 56777777766667778899999999999999999999999999999996432210 000
Q ss_pred cC-----------------------------CCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566 79 QL-----------------------------PDRCYALTVRYPLMVVGTADRNLVV 105 (112)
Q Consensus 79 ~~-----------------------------~~~~~~~~~~~~~~~~~~~d~~v~~ 105 (112)
.. .+-.++|+++|.++++|+..|.+.+
T Consensus 227 ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 227 EYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 11 1124667778888888888777643
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.00 E-value=8.2e-08 Score=58.55 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=71.6
Q ss_pred eeEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCC--CcEEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWD--KTLKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~--~~i~~w~~~~~~~~ 75 (112)
...+|+|+|++++..... ..|.+|++.+++.. .+..+...+....|+|+++.++ +...+ ..|++|++.+++..
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence 356799999998876543 47999998776543 2333445566789999998765 44443 35888898776533
Q ss_pred EEec--CCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566 76 HTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP 111 (112)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~ 111 (112)
.... .......|+++++.++..+. ++ .|+++|+.++
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 2222 12345678899988876654 33 5777777654
No 242
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.99 E-value=3.4e-08 Score=62.52 Aligned_cols=106 Identities=20% Similarity=0.519 Sum_probs=81.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCC-----CEEEEeeCCCcEEEeeCCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEM-----NLLATGSWDKTLKYWDTRQP 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~~~~~~~~~~i~~w~~~~~ 72 (112)
+.+.+|..||.+++.|..||+|.+.+ ..+++...+. +..++|.+++|+|.. ..++...++.++.++.+...
T Consensus 135 ~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 135 IICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred EEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 45789999999999999999999997 4455544443 367889999999832 46777788888888887543
Q ss_pred Cc--eEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 73 NP--VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 73 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
.. -+.+.....++.+-++|++++.|+.|+.+.+|-
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 22 234455556777888999999999999999884
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.2e-09 Score=63.28 Aligned_cols=80 Identities=15% Similarity=0.258 Sum_probs=70.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE-EeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT-VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
|+++...|+++++++|...+.+..+|++.++.... +.+..+.++++..+|..+++++++-|++++++|.++.+.++..+
T Consensus 250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 46788899999999999999999999998887654 78888999999999999999999999999999999977665544
Q ss_pred C
Q 045566 80 L 80 (112)
Q Consensus 80 ~ 80 (112)
.
T Consensus 330 v 330 (412)
T KOG3881|consen 330 V 330 (412)
T ss_pred h
Confidence 3
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.1e-07 Score=58.44 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=70.5
Q ss_pred eEEEcCCCCEEEEEc-CCCcEEEEE--cCC-CCCcEEEeeccCCeeEEEEccCCCEEEEeeCC---CcEEEeeCCCCCce
Q 045566 3 CSTWKDDGTTVFSGG-CDKQVKMWP--LLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPV 75 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~-~~~~v~~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~w~~~~~~~~ 75 (112)
..+|+|+|+.|+..+ .++...+|. +.. +.....+......+....|+|+|+.++....+ ..|.+||+.+++..
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 568999999877654 456555554 332 22233444444566788999999988765432 46899999877654
Q ss_pred EEec--CCCeEEEEeeCCCEEEEEeC---CCcEEEEECcCC
Q 045566 76 HTQQ--LPDRCYALTVRYPLMVVGTA---DRNLVVFNLQNP 111 (112)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~---d~~v~~~d~~~~ 111 (112)
.... .......|+|+++.++.... ...+.++|+..+
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3222 23456789999987765433 345788887664
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.5e-07 Score=58.16 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=69.1
Q ss_pred eeEEEcCCCCEEEEEcC-C--CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE-eeCCCc--EEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFSGGC-D--KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDKT--LKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~--i~~w~~~~~~~~ 75 (112)
.+..|+|+|+.++..+. + ..|.++|+.+++.. .+...........|+|+++.++. ...++. |.++|+.+++..
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT 299 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence 35789999998877643 2 35888888766542 22222333456889999997764 455554 777788766543
Q ss_pred EEec--CCCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566 76 HTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP 111 (112)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~ 111 (112)
.... .......|+|+++.++..+. ++ .++++|+.++
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 2211 22356789999988766554 33 4666676654
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2e-07 Score=57.37 Aligned_cols=108 Identities=15% Similarity=0.088 Sum_probs=70.6
Q ss_pred eeEEEcCCCCEEE-EEcCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVF-SGGCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~ 75 (112)
...+|+|+|+.++ +.+.++. |.++|+.+++. ..+..+........|+|+++.++..+. ++ .|+++|+..++..
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence 3568999998775 4455554 66778765543 444445555677899999998776553 33 5778887665443
Q ss_pred EEe--cCCCeEEEEeeCCCEEEEEeCC---CcEEEEECcC
Q 045566 76 HTQ--QLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQN 110 (112)
Q Consensus 76 ~~~--~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~ 110 (112)
... ........|+|+++.++....+ ..|.+||+..
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 322 2233457899999988876543 3577788643
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=3.1e-09 Score=72.75 Aligned_cols=68 Identities=26% Similarity=0.410 Sum_probs=58.3
Q ss_pred eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 37 AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 37 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
..|.+.++++++.|..+.+++|+.+|.+++||++..+.++.+.. ++ ...++++++..|.++||++...
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------hh-hhheeeccCcccceEEEEcccc
Confidence 56888999999999999999999999999999998877766644 44 5678999999999999998764
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.91 E-value=4.1e-07 Score=55.54 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=71.4
Q ss_pred eeEEEcCCCCEEEE-EcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCce
Q 045566 2 LCSTWKDDGTTVFS-GGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPV 75 (112)
Q Consensus 2 ~~~~~~~~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~ 75 (112)
.+.+|+|+++.|+. .+.++ .+.+|++.++.. ..+..+........|+|+++.++..+. .+ .|.++++.+.+..
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 35789999987764 44443 588888776543 333334444456789999988765543 33 5777888766543
Q ss_pred EEe--cCCCeEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566 76 HTQ--QLPDRCYALTVRYPLMVVGTADR---NLVVFNLQNP 111 (112)
Q Consensus 76 ~~~--~~~~~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~ 111 (112)
... ........|+|++..++..+.++ .|.+||+.++
T Consensus 316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 222 12234678899999988887765 6888887654
No 249
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=4.2e-07 Score=61.27 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=77.2
Q ss_pred eEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCcEEEe------------e---------ccCCeeEEEEccCCCEEEEeeC
Q 045566 3 CSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVA------------M---------HDAPIKEVAWIPEMNLLATGSW 60 (112)
Q Consensus 3 ~~~~~~~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~------------~---------~~~~v~~~~~~~~~~~~~~~~~ 60 (112)
.++++|++..+ ++-..++.|++||+.++....... + .-.....++++++|..+++-..
T Consensus 744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~ 823 (1057)
T PLN02919 744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY 823 (1057)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC
Confidence 58899998855 455667899999987654211100 0 0112357889999998888889
Q ss_pred CCcEEEeeCCCCCceEEec----------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 61 DKTLKYWDTRQPNPVHTQQ----------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 61 ~~~i~~w~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
++.|++||..+........ .....++++++|+.+++-+.++.|++||++++
T Consensus 824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 9999999987665432111 02246788999998888888999999999875
No 250
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=3.4e-07 Score=52.32 Aligned_cols=111 Identities=13% Similarity=-0.024 Sum_probs=79.9
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC-CcEE--EeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE-
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-QPVT--VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT- 77 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~- 77 (112)
.+++++++++++++.+....|..|.+.... .+.. .......-.+..|+.....++++..||++.+||++.....+.
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 467899999999999999999999886543 2222 222334446788998888999999999999999987653322
Q ss_pred -------ecCCCeEEEEeeCCC--EEEEEeCCCcEEEEECcCCC
Q 045566 78 -------QQLPDRCYALTVRYP--LMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 -------~~~~~~~~~~~~~~~--~~~~~~~d~~v~~~d~~~~~ 112 (112)
+.+..+...|++-|. +|+..-.-+.+.+.|+|++.
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 233456778887553 45555555678899988763
No 251
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-07 Score=63.03 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=80.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccC-C--CEEEEe-e-CCCcEEEeeCCCCCc
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPE-M--NLLATG-S-WDKTLKYWDTRQPNP 74 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~--~~~~~~-~-~~~~i~~w~~~~~~~ 74 (112)
|++++.+|.+++++.|...|.+.+||++-+.++.... .+..++..+..+|- + ...+++ . ..+.+.+|++.++.+
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 5789999999999999999999999998777766543 34577888888772 2 344444 3 578899999988754
Q ss_pred eEEecCC-----------C-----------eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 75 VHTQQLP-----------D-----------RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 75 ~~~~~~~-----------~-----------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
...+... . ...++...+..+++|+.|..|+.||...++
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 3332111 1 122333345689999999999999987763
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=59.14 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=78.3
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe-eCCCcEEEeeCCCCCceEEec---
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNPVHTQQ--- 79 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~w~~~~~~~~~~~~--- 79 (112)
.+|+|+|+++|++++- .+.+.|..+-+..+.+. --..|.-+.|..+..+++.+ ..++.|.+|++....-...+.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5799999999999875 78888876655433222 23456778888877766554 567799999998877555553
Q ss_pred CCCeEEEEeeCCCE-EEEEeCCCcEEEEECcCC
Q 045566 80 LPDRCYALTVRYPL-MVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~~d~~v~~~d~~~~ 111 (112)
.+....+|+|+|+. +.+...+-+|.+|.+.+.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 34578899999964 556677999999998764
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.86 E-value=4.4e-08 Score=56.28 Aligned_cols=71 Identities=24% Similarity=0.452 Sum_probs=56.3
Q ss_pred EEcC-CCCEEEEEcCCCcEEEEEcCCCC-CcEE-EeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC-CCce
Q 045566 5 TWKD-DGTTVFSGGCDKQVKMWPLLSGG-QPVT-VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ-PNPV 75 (112)
Q Consensus 5 ~~~~-~~~~l~~~~~~~~v~~~~~~~~~-~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~-~~~~ 75 (112)
.|+. +.+.+.+|+.|+.+..||++.++ .+.. .+.|...|.++.-+| .+.++++|+.|..|++||.|+ ++++
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 3444 44788999999999999998443 3332 457889999999887 788999999999999999984 4444
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=9.2e-07 Score=54.38 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=69.8
Q ss_pred eEEEcCCCCEEEE-EcCCC--cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCceE
Q 045566 3 CSTWKDDGTTVFS-GGCDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPVH 76 (112)
Q Consensus 3 ~~~~~~~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~~ 76 (112)
..+|+|+|+.++. .+.++ .+.++|+.+++. ..+..+........|+|+++.++..+. ++ .|+++++.+++...
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 5789999998764 44444 577888876553 334444455667789999987765443 33 47777876665432
Q ss_pred Ee-cC-CCeEEEEeeCCCEEEEEeCC-C--cEEEEECcCC
Q 045566 77 TQ-QL-PDRCYALTVRYPLMVVGTAD-R--NLVVFNLQNP 111 (112)
Q Consensus 77 ~~-~~-~~~~~~~~~~~~~~~~~~~d-~--~v~~~d~~~~ 111 (112)
.. .. ......|+|+++.++..+.+ + .|.++|+.++
T Consensus 326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 21 11 12346789999988776653 2 4778888765
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.85 E-value=1e-07 Score=55.77 Aligned_cols=98 Identities=15% Similarity=0.323 Sum_probs=75.0
Q ss_pred eeEEEcCCCCEEEE-EcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCceEE--
Q 045566 2 LCSTWKDDGTTVFS-GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPVHT-- 77 (112)
Q Consensus 2 ~~~~~~~~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~~~-- 77 (112)
.-+.|..+..++.+ ...++.|.+|++...+--..+.....++..+.|+|+|++++ +...+-.|.+|.+.+.+....
T Consensus 52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred hheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc
Confidence 34677777665544 46788999999988887778887888999999999997665 455688899999988775432
Q ss_pred ecCCCeEEEEeeCCCEEEEEeC
Q 045566 78 QQLPDRCYALTVRYPLMVVGTA 99 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ 99 (112)
.+......+|+++|++.+.++.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred cccCceeEEECCCCceeeeeec
Confidence 2345678899999987766543
No 256
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=7.9e-09 Score=42.29 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=24.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWP 26 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~ 26 (112)
|.+++|+|+++++++++.|+.|++||
T Consensus 14 i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 14 INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999999999999999997
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=7.2e-08 Score=61.59 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=79.0
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC---------------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---------------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~ 66 (112)
.|++|+.+..++++|+.||.+++..+.+... .+++.+|...|.-+.|+...+.+-+...+|.|.+
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 5899999999999999999999987643211 2356789999999999998888889999999999
Q ss_pred eeCCCCCceEE-----ecCCCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566 67 WDTRQPNPVHT-----QQLPDRCYALTVRYPLMVVGTADRNLVV 105 (112)
Q Consensus 67 w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~v~~ 105 (112)
|-+-.+..... .+..+.+++|..+|..+...-.||.|.+
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 99877653321 1223456777777877666666666543
No 258
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.84 E-value=8.1e-09 Score=58.38 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=55.3
Q ss_pred cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCce----EEecCCCeEEEEee-CCCEEEEEeCCCcEEEEECc
Q 045566 40 DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPV----HTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 40 ~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~~ 109 (112)
...|++++-+| ....+++|+.+|.+.+||.++.... ..++.+..-+.|+| ++..|++++.||.+..||..
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 34589999999 4556678888999999999876422 33455667788988 57799999999999999976
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.83 E-value=5.6e-08 Score=67.03 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=82.6
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-------
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN------- 73 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~------- 73 (112)
.++.=+|...+.++|+.||.+++|.-..++.+.... .....++.+.|+.+|..+..+..||.+.+|......
T Consensus 2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qch 2291 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCH 2291 (2439)
T ss_pred eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccC
Confidence 345556777889999999999999877777666553 233778888898888888888899999988754211
Q ss_pred --------------------------------------ceE-EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 74 --------------------------------------PVH-TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 74 --------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++ .+....+++++.|..+.+++|+.+|.|++||++..
T Consensus 2292 nk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2292 NKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred CccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 001 11123467888899999999999999999999853
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.83 E-value=1.1e-06 Score=52.63 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=77.0
Q ss_pred CCCEEEEEcCC-----CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC----------CCcEEEeeCCCCC
Q 045566 9 DGTTVFSGGCD-----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW----------DKTLKYWDTRQPN 73 (112)
Q Consensus 9 ~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~i~~w~~~~~~ 73 (112)
+++.+++.... +.|.+.|..+.+.+.++..-..+- .+ ++|+++.+..+.. +..|.+||..+.+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 45555555443 789999999888887776444443 34 9999987766654 7889999999999
Q ss_pred ceEEecCCCe----------EEEEeeCCCEEEEEeC--CCcEEEEECcCCC
Q 045566 74 PVHTQQLPDR----------CYALTVRYPLMVVGTA--DRNLVVFNLQNPQ 112 (112)
Q Consensus 74 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~--d~~v~~~d~~~~~ 112 (112)
.+..+..+.. .+.++++|+++++... +..|.+.|+.+++
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA 139 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence 8877765332 7889999999998774 6789999998764
No 261
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.3e-07 Score=58.80 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-----CCEEEEeeCCCcEEEeeCC---CCCceEEecC
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-----MNLLATGSWDKTLKYWDTR---QPNPVHTQQL 80 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~i~~w~~~---~~~~~~~~~~ 80 (112)
+|.++++|+.||.|.+..+-+.+....+. ...++.+++++|+ .+++++|+..| +.++.-+ +...+.....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 68999999999999999887777665554 4568899999997 56889999998 7666432 2223323333
Q ss_pred CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.....+..+.|++++-++.+| |++||+.+.
T Consensus 160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred ccceEEEEecCcEEEEecCCC-cEEEecccc
Confidence 445556667888888887665 899998764
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=4.8e-07 Score=55.65 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=64.7
Q ss_pred eEEEcCCCCEEEEEcC-CC----cEEEEEcCCC--CCcEEEe-eccCCeeEEEEccCCCEEEEee-CCCcEEEe--eCCC
Q 045566 3 CSTWKDDGTTVFSGGC-DK----QVKMWPLLSG--GQPVTVA-MHDAPIKEVAWIPEMNLLATGS-WDKTLKYW--DTRQ 71 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~-~~----~v~~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w--~~~~ 71 (112)
..+|+|||+.|+..+. ++ .+..|++..+ .....+. ..........|+|+|+.++..+ .++...+| ++..
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 4579999988876542 22 2344666542 2223332 2223446789999999776554 45654555 4432
Q ss_pred -CCceEEe---cCCCeEEEEeeCCCEEEEEeCC---CcEEEEECcCCC
Q 045566 72 -PNPVHTQ---QLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQNPQ 112 (112)
Q Consensus 72 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~~ 112 (112)
+.....+ ........|+|+|+.++..+.+ ..|.+||+.+++
T Consensus 315 ~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 315 EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 1222222 1234567899999988776543 368899987653
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.80 E-value=4e-07 Score=56.33 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=84.9
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.++.++.+...|.+++.|..+-.|+.......+........+.+++.+||+..+++++ +.|++||.++.+.+..+.+
T Consensus 105 v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg 182 (541)
T KOG4547|consen 105 VNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG 182 (541)
T ss_pred ceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC
Confidence 45667777788899999999999999988888888888888899999999999887765 8999999999999988876
Q ss_pred C---CeEEEEeeC-----CCEEEEE-eCCCcEEEEECc
Q 045566 81 P---DRCYALTVR-----YPLMVVG-TADRNLVVFNLQ 109 (112)
Q Consensus 81 ~---~~~~~~~~~-----~~~~~~~-~~d~~v~~~d~~ 109 (112)
+ ++.+.|.-. |.+++++ ..+..+.+|-++
T Consensus 183 h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 183 HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 4 466666554 5555554 445567777543
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.79 E-value=4.3e-07 Score=56.20 Aligned_cols=101 Identities=9% Similarity=0.154 Sum_probs=84.9
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CCeE
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRC 84 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~~~ 84 (112)
-..++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..+.+++.|..+..|++...+.++.... ....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 3467788889999999998888777664 6889999999999888999999999999999998887776654 3467
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 85 YALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
++..|++..+++++ +.|.+||+++++
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCce
Confidence 88999998888775 579999998864
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=8.9e-08 Score=56.25 Aligned_cols=110 Identities=13% Similarity=0.196 Sum_probs=77.4
Q ss_pred CeeEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcE------E----------EeeccCCeeEEEEccCCCEEEEeeCCCc
Q 045566 1 VLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPV------T----------VAMHDAPIKEVAWIPEMNLLATGSWDKT 63 (112)
Q Consensus 1 v~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~------~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 63 (112)
|++..|+| ..+.++..+..|.|++.|++.....- . +..--..|..+.|+.+|+++++-. =-+
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-ylt 294 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLT 294 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cce
Confidence 45678999 56788888899999999998432211 1 111234678899999999998763 257
Q ss_pred EEEeeCC-CCCceEEecCCC------------------eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 64 LKYWDTR-QPNPVHTQQLPD------------------RCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 64 i~~w~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+++||+. ..+++..+..+. -.++|+.++..+++|+.....+++++..+
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999994 455555443221 13566667779999999999999996554
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=2e-06 Score=53.28 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=67.7
Q ss_pred eEEEcCCCCEEEE-EcCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC--cEEEeeCCCCCceE
Q 045566 3 CSTWKDDGTTVFS-GGCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPVH 76 (112)
Q Consensus 3 ~~~~~~~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~w~~~~~~~~~ 76 (112)
..+|+|+|+.|+. .+.++. |.++|+.+++. ..+..+........|+|+++.++..+. ++ .+.++|+.+++...
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 4689999998765 455554 67778765543 334444445677889999987765443 33 46666776665432
Q ss_pred E-ecC-CCeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566 77 T-QQL-PDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP 111 (112)
Q Consensus 77 ~-~~~-~~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~ 111 (112)
. ... ......|+|+++.++..+. ++ .|.++|+.++
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2 122 1234688999998877655 33 3555676654
No 267
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.76 E-value=4.5e-09 Score=67.47 Aligned_cols=65 Identities=23% Similarity=0.426 Sum_probs=56.8
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
+.++.+.++..+++++.|..|++|-+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 236 tdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 236 TDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred chhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 445666666788999999999999999999999999999999999999854 56789999999987
No 268
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.6e-07 Score=58.82 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=65.7
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCee-EEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK-EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
.-+.|+|.-..+|.+..+|.+.+..+. .+.+.+++-+...++ +++|.|||+.++.|-.||+|++.|..++..+..
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 357899999999999999999999877 777888886666666 999999999999999999999999998876655
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.4e-06 Score=49.90 Aligned_cols=99 Identities=7% Similarity=0.039 Sum_probs=67.2
Q ss_pred EEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc--eEEecCCC----eEEE
Q 045566 13 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQQLPD----RCYA 86 (112)
Q Consensus 13 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~~~~~----~~~~ 86 (112)
+..++.|.++++.++.............-...++.++++++++++.+..+.|..|.+..... ......+. -...
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 45566677777766543322222211112367889999999999999999999998865432 22222222 3456
Q ss_pred EeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 87 LTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 87 ~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
|+.....++++..||.+.|||+|..
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred eccCcceEEEEecCCcEEEEEeccc
Confidence 7777889999999999999999864
No 270
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=7.1e-08 Score=58.74 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=87.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCCCC-----
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP----- 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~~~----- 72 (112)
|..+.|+..|..+++|+.|..|.+||-....+...+ .+|...|....|-| +...+++++.||.+++=.+...
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~ 224 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN 224 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec
Confidence 456889999999999999999999998877776655 47888888888888 4567889999999998765432
Q ss_pred -CceEEecCCCeEEEEeeCC-CEEEEEeCCCcEEEEECcCC
Q 045566 73 -NPVHTQQLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~ 111 (112)
+.+..+..++..++..|.. .-+++++.|+.+.-+|++..
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence 2334556677788888865 46888999999999998864
No 271
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=7.9e-08 Score=58.54 Aligned_cols=109 Identities=14% Similarity=0.260 Sum_probs=78.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCC------------CcE-EEeeccC--CeeEEEE-ccCCCEEEEeeCCCcE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG------------QPV-TVAMHDA--PIKEVAW-IPEMNLLATGSWDKTL 64 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~------------~~~-~~~~~~~--~v~~~~~-~~~~~~~~~~~~~~~i 64 (112)
|++++|+-++.-+.+.-.|-.++++....+. ... .+++|.. .|..+.| .|...++++|+..|.|
T Consensus 339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI 418 (559)
T KOG1334|consen 339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI 418 (559)
T ss_pred ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence 6899999776666666677788888543211 111 2566653 4667765 6788999999999999
Q ss_pred EEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 65 KYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.+|+-.+++.++...+.. +++--+|.-+.|++++-|..|+||-..
T Consensus 419 FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 419 FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred EEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 999999888776665532 333345667899999999999999653
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.1e-05 Score=47.74 Aligned_cols=108 Identities=14% Similarity=0.214 Sum_probs=76.8
Q ss_pred eEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcE---EEeeccCC----------eeEEEEccCCCEEEEeeC-CCcEEEe
Q 045566 3 CSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPV---TVAMHDAP----------IKEVAWIPEMNLLATGSW-DKTLKYW 67 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~---~~~~~~~~----------v~~~~~~~~~~~~~~~~~-~~~i~~w 67 (112)
.++.++++++++++.. .+.|.++.+.....+. ....|.+. ++...+.|+++++++.+. --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 5788999999988864 4789999886533222 22234444 889999999998887764 3458899
Q ss_pred eCCCCCceEE----e--cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566 68 DTRQPNPVHT----Q--QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN 110 (112)
Q Consensus 68 ~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~ 110 (112)
++..++.... . ....+.+.|+|++++.++.+. +++|.+|+...
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 9885542211 1 123478999999998877665 88999998765
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=1.4e-05 Score=49.31 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=68.2
Q ss_pred eEEEcCCCCE-EEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE-eeC--CCcEEEeeCCCCCce
Q 045566 3 CSTWKDDGTT-VFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSW--DKTLKYWDTRQPNPV 75 (112)
Q Consensus 3 ~~~~~~~~~~-l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~--~~~i~~w~~~~~~~~ 75 (112)
.-.|+|+|+. ++..+. +..|.++|+.+++... +....+......|+|+|+.++. ... +..|.++++.+++..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence 5689999984 554332 3568888987665533 3234455567789999986653 333 356777888766533
Q ss_pred EEecCC--CeEEEEeeCCCEEEEEeC-CC--cEEEEECcCC
Q 045566 76 HTQQLP--DRCYALTVRYPLMVVGTA-DR--NLVVFNLQNP 111 (112)
Q Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~~-d~--~v~~~d~~~~ 111 (112)
.....+ .....|+|+|+.++..+. .+ .|.+.|+.++
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 322222 345679999987766654 23 5777777654
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.61 E-value=7.8e-07 Score=52.47 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eec-----cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMH-----DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~-----~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|++++++.|+..+.++. |-.|.+|++.-......+ +.+ ..-|++..|+| ....++-.+..|.|++.|++.
T Consensus 167 iNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 56888998888877654 688999998755543333 221 24578889999 667888889999999999985
Q ss_pred CCceEEe----c---------------CCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 72 PNPVHTQ----Q---------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 72 ~~~~~~~----~---------------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
....-.+ . ..+..+.|+++|+++++-.. -+|++||+.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 4321111 1 12356889999999886643 479999984
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=1.3e-05 Score=49.41 Aligned_cols=108 Identities=6% Similarity=-0.012 Sum_probs=66.0
Q ss_pred eEEEcCCCCEEEEE-cC--CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCC--cEEEeeCCCCCceE
Q 045566 3 CSTWKDDGTTVFSG-GC--DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDK--TLKYWDTRQPNPVH 76 (112)
Q Consensus 3 ~~~~~~~~~~l~~~-~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~--~i~~w~~~~~~~~~ 76 (112)
...|+|||+.++.. +. +..+.++++..++ ...+.........-.|+|+|+.++-.+ ..+ .|.+.|+.+++...
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 46799999877543 33 3467777876554 333433333334567999998665544 333 57777887665533
Q ss_pred EecCCCeEEEEeeCCCEEEEEeCC---------CcEEEEECcCC
Q 045566 77 TQQLPDRCYALTVRYPLMVVGTAD---------RNLVVFNLQNP 111 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~d---------~~v~~~d~~~~ 111 (112)
..........|+|+|+.++..... ..|.+.|+.++
T Consensus 316 lt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 316 VVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 222222234899999987766543 25777777655
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.60 E-value=4.1e-06 Score=51.55 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=73.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC----CcEEEeeCCCCCceE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD----KTLKYWDTRQPNPVH 76 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~w~~~~~~~~~ 76 (112)
|.++..+|+|++++++.....+.+.|+.+++....=+...+-|+.+.|+|++++++-+--+ ..|+++|+.+.+...
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 4578899999999999999999999999887755445567789999999999999876444 458899998876543
Q ss_pred Eec--CCCeEEEEeeCCCEEEEE
Q 045566 77 TQQ--LPDRCYALTVRYPLMVVG 97 (112)
Q Consensus 77 ~~~--~~~~~~~~~~~~~~~~~~ 97 (112)
.-. ...-+-+|+|++++|.--
T Consensus 484 vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 484 VTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred ecCCcccccCcccCCCCcEEEEE
Confidence 322 223456778888766543
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.58 E-value=1.5e-05 Score=49.22 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=79.6
Q ss_pred EEcCCCCEEEEEcCCC-cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe---cC
Q 045566 5 TWKDDGTTVFSGGCDK-QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ---QL 80 (112)
Q Consensus 5 ~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~---~~ 80 (112)
.+.-+++.++.|..|| .+-++|..+++. ..+...-+.|.++..+++|+.++.+.....+.+.|+.++.....- ..
T Consensus 366 r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~ 444 (668)
T COG4946 366 RIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG 444 (668)
T ss_pred EEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc
Confidence 3444556778888888 788999765543 445556678999999999999999999999999999988754332 23
Q ss_pred CCeEEEEeeCCCEEEEEeCC----CcEEEEECcCC
Q 045566 81 PDRCYALTVRYPLMVVGTAD----RNLVVFNLQNP 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d----~~v~~~d~~~~ 111 (112)
-+..+.|+|++++++-+=.+ ..|+++|+..+
T Consensus 445 lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 445 LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 45778899999988776444 45788888764
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=9.3e-06 Score=50.51 Aligned_cols=89 Identities=15% Similarity=0.315 Sum_probs=63.6
Q ss_pred cEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEE--eeCCCcEEEeeCCCCCceEEe-cCCCeEEEEeeCCCEEEEE
Q 045566 21 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT--GSWDKTLKYWDTRQPNPVHTQ-QLPDRCYALTVRYPLMVVG 97 (112)
Q Consensus 21 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 97 (112)
.+++.++........+ ...++|+++.|+|+++.|+. |-.--.+.++|++-. ++..+ ..+.+.+-|+|.|++++.+
T Consensus 252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~egpRN~~~fnp~g~ii~lA 329 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPEGPRNTAFFNPHGNIILLA 329 (566)
T ss_pred eEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCCCCccceEECCCCCEEEEe
Confidence 4666666522222222 35789999999999987654 445667889998654 44444 4567889999999999988
Q ss_pred eCC---CcEEEEECcCC
Q 045566 98 TAD---RNLVVFNLQNP 111 (112)
Q Consensus 98 ~~d---~~v~~~d~~~~ 111 (112)
+.+ |.+.+||+.+.
T Consensus 330 GFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPNR 346 (566)
T ss_pred ecCCCCCceEEEeccch
Confidence 774 78999998764
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.57 E-value=1.9e-05 Score=45.50 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=25.4
Q ss_pred eEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 83 RCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
-.+.++|++..|++...+|.|.+|++.+
T Consensus 233 ~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 233 FKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred EEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 4688999999999999999999999865
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.55 E-value=2.2e-05 Score=53.45 Aligned_cols=108 Identities=7% Similarity=0.036 Sum_probs=73.1
Q ss_pred eEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCcEEEee---------------ccCCeeEEEEccCCC-EEEEeeCCCcEE
Q 045566 3 CSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQPVTVAM---------------HDAPIKEVAWIPEMN-LLATGSWDKTLK 65 (112)
Q Consensus 3 ~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~-~~~~~~~~~~i~ 65 (112)
.++++| ++..+++...++.|++||..++... .+.+ .-.....++++|++. .+++-..++.|+
T Consensus 687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred EEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 578998 5566677777889999997654321 1111 112345799999887 555666788999
Q ss_pred EeeCCCCCceEEe------------------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 66 YWDTRQPNPVHTQ------------------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 66 ~w~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+||+.++...... ......+++++++..+++-..++.|++||..++
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 9998765422100 001246788888988888888999999998754
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.55 E-value=5.8e-06 Score=51.02 Aligned_cols=106 Identities=10% Similarity=0.131 Sum_probs=75.8
Q ss_pred CeeEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC---CcEEEeeCCCCCce
Q 045566 1 VLCSTWKDDGTTVFSGG--CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPV 75 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~w~~~~~~~~ 75 (112)
|..++|.|.++.+++.+ ....+.++|++.+ ..+...+..-..+.|+|.+++++.++.+ |.+.+||.......
T Consensus 277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred ceeeeecccCCceeEEecccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 56789999888776654 6778889998755 2233344455678899999988886654 67999998766544
Q ss_pred E-EecCCC-eEEEEeeCCCEEEEEeC------CCcEEEEECc
Q 045566 76 H-TQQLPD-RCYALTVRYPLMVVGTA------DRNLVVFNLQ 109 (112)
Q Consensus 76 ~-~~~~~~-~~~~~~~~~~~~~~~~~------d~~v~~~d~~ 109 (112)
. .+.+.. ....|+|+++++.+... |..+.+||+-
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 3 555544 45569999998877633 7789999874
No 282
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=2.2e-07 Score=60.78 Aligned_cols=109 Identities=17% Similarity=0.296 Sum_probs=81.6
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CC-cEEEeeCCC-CCceEEe
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK-TLKYWDTRQ-PNPVHTQ 78 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~-~i~~w~~~~-~~~~~~~ 78 (112)
+|++|+-+.++|++|+..|.|++++..++........|.++++-+.-+.+|..+++.+. .. ...+|+... ..+.+.+
T Consensus 1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc
Confidence 68999999999999999999999999999988888999999999998889988776654 33 477898865 3344444
Q ss_pred cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 79 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
. ...+..|+.....-+.|+.-....+||+.++
T Consensus 1185 ~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1185 D-EDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred c-ccceeehhhhHHHHHhcccccceEEEecccC
Confidence 3 2344556554444444555556788888775
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.1e-06 Score=52.71 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEeeCCCcEEEeeCCCCCceEEecC--CCeEEEEeeCC-CEEEEE
Q 045566 22 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRY-PLMVVG 97 (112)
Q Consensus 22 v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~ 97 (112)
+++.+..+-+....++.+...|..++|+|... ++..++.+..|.+.|+++......+.. ...+.+|+.+. .+++.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 44444444444555667788899999999555 677888999999999999877766654 34567776654 578888
Q ss_pred eCCCcEEEEECcCCC
Q 045566 98 TADRNLVVFNLQNPQ 112 (112)
Q Consensus 98 ~~d~~v~~~d~~~~~ 112 (112)
-.+|.|.+||+|.++
T Consensus 255 l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPE 269 (463)
T ss_pred ccCceEEEEEccCCC
Confidence 889999999999874
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.49 E-value=4.1e-05 Score=46.10 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred EcCCCCEEEEEcC----------CCcEEEEEcCCCCCcEEEeeccC-------CeeEEEEccCCCEEEEee-C-CCcEEE
Q 045566 6 WKDDGTTVFSGGC----------DKQVKMWPLLSGGQPVTVAMHDA-------PIKEVAWIPEMNLLATGS-W-DKTLKY 66 (112)
Q Consensus 6 ~~~~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~-~-~~~i~~ 66 (112)
++|+++.++++.. +..|.+||..+.+...++..... .-..++++|+|++++... . +..+.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998877754 78899999999998877753221 234788999999888776 3 688999
Q ss_pred eeCCCCCceEEecCCC
Q 045566 67 WDTRQPNPVHTQQLPD 82 (112)
Q Consensus 67 w~~~~~~~~~~~~~~~ 82 (112)
.|+.+.+.+.....+.
T Consensus 133 vD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD 148 (352)
T ss_pred EECCCCcEEEEEeCCC
Confidence 9999998887765543
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.48 E-value=2.7e-06 Score=50.18 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=60.7
Q ss_pred CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 32 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 32 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
++.++.+|.+++.++.|.+....+++|..|..+.+||+...+-+ ... ...+..+...+.-..+.+++.||.|.+||
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 44566789999999999998899999999999999998655432 222 22334445555567899999999999999
Q ss_pred CcC
Q 045566 108 LQN 110 (112)
Q Consensus 108 ~~~ 110 (112)
++.
T Consensus 269 mn~ 271 (404)
T KOG1409|consen 269 MNV 271 (404)
T ss_pred ccc
Confidence 864
No 286
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=6.5e-06 Score=51.46 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=77.7
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-----------CCCcEEEeeCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-----------WDKTLKYWDTR 70 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~i~~w~~~ 70 (112)
+-+.|||.|.+|++-..-| |.+|-...-..++.+. | ..|.-+.|+|..+++++-+ ....+.+||++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 3578999999999888755 7899876666666554 3 3578899999999988743 23569999999
Q ss_pred CCCceEEecCC------CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 71 QPNPVHTQQLP------DRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 71 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
++...+.+... -....|+.++.+++....+ .|.||+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp 334 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP 334 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecC
Confidence 99876666441 2467888899998887764 57777654
No 287
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.47 E-value=1.1e-06 Score=34.74 Aligned_cols=36 Identities=39% Similarity=0.607 Sum_probs=29.4
Q ss_pred cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566 33 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 33 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~ 68 (112)
...+..|...+.++.|.+.+..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344556778889999998888889999999999885
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=5.8e-06 Score=53.60 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=80.9
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCC------------CEEEEeeCCCcEEEeeCC
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM------------NLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~i~~w~~~ 70 (112)
++.|+|+| .++.|+. ..|.+-|..+.+.++.+..|+..|+.+.|.|.. ..++++...|.|.+||+.
T Consensus 20 A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 56788765 5666765 578899999899999999999999999998731 246777888999999998
Q ss_pred CCCceEEecC---CCeEEEEeeC---C-CEEEEEeCCCcEEEEECcCCC
Q 045566 71 QPNPVHTQQL---PDRCYALTVR---Y-PLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 71 ~~~~~~~~~~---~~~~~~~~~~---~-~~~~~~~~d~~v~~~d~~~~~ 112 (112)
....+..+.. +...++|-+. . ..+++-.....+.+|+..+|+
T Consensus 98 ~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 98 LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence 8766655543 3355666552 2 466777777889999988874
No 289
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.45 E-value=1.9e-05 Score=39.58 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=63.6
Q ss_pred CeeEEEcC-CC---CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566 1 VLCSTWKD-DG---TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH 76 (112)
Q Consensus 1 v~~~~~~~-~~---~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 76 (112)
|+++++.+ ++ +.|++|+.|..|++|+-. +.+.++. ..+.++++.-... ..|+.+..+|+|-+|+-.. .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 46677665 32 589999999999999732 3333443 4566777766655 5688899999999997643 333
Q ss_pred EecCC--CeEEE-EeeCC---CEEEEEeCCCcEEE
Q 045566 77 TQQLP--DRCYA-LTVRY---PLMVVGTADRNLVV 105 (112)
Q Consensus 77 ~~~~~--~~~~~-~~~~~---~~~~~~~~d~~v~~ 105 (112)
..+.. ..++. ++.++ +-|++|-.+|.|-+
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 33332 22222 33332 36888888888743
No 290
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=2.9e-06 Score=55.62 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---------CCcEEEeeCCCCCceEEe
Q 045566 8 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---------DKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 8 ~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~i~~w~~~~~~~~~~~ 78 (112)
.+++.+++|...|+|.+.|.++.+.+.++..|.+.+..+.. .|+.+++++. |..+++||++.-+.+..+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 36789999999999999999999999999999999887555 6888888754 456789998854421110
Q ss_pred cC-------------------------------------------------CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 79 QL-------------------------------------------------PDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 79 ~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
.. ....+.++++++.++.+..+|.|.+|-
T Consensus 263 ~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 263 QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 00 023567777888999999999999995
No 291
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.43 E-value=3.2e-06 Score=53.85 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=77.2
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE-----
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----- 76 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~----- 76 (112)
-+++..+++++.|+.-|.+.+|+-. +...+.++ +....+.....+++..+++.|+..+.|.++.+....+..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecC-chhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 3566678999999999999999844 44334333 244455666678888899999999999999876643221
Q ss_pred ----EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 77 ----TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.++..+++++|++++..+++|...|.|..-.+.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 122345789999999999999999998776544
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=1.9e-06 Score=55.52 Aligned_cols=110 Identities=13% Similarity=0.263 Sum_probs=80.5
Q ss_pred CeeEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-CceEE
Q 045566 1 VLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NPVHT 77 (112)
Q Consensus 1 v~~~~~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~~~~ 77 (112)
|+.+.|+|+. ..+++++-|..+..||++...... ...........++|+.....+.+.+..+.+++||.+.+ .++..
T Consensus 117 itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s 196 (1081)
T KOG0309|consen 117 ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS 196 (1081)
T ss_pred eeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE
Confidence 4567788855 478999999999999998776543 44445566688999986666677778889999999865 45666
Q ss_pred ecCCCeE---EEEee-CCCEEEEEeCCCcEEEEECcC
Q 045566 78 QQLPDRC---YALTV-RYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 78 ~~~~~~~---~~~~~-~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.+.++.. +.|.. ....+.+++.|++|++||..+
T Consensus 197 ~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 197 LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 6665432 33322 244688889999999998754
No 293
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.40 E-value=8.4e-05 Score=44.77 Aligned_cols=107 Identities=14% Similarity=0.206 Sum_probs=72.5
Q ss_pred eEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCcEEE---ee-----------ccCCeeEEEEccCCCEEEEeeC-CCcEEE
Q 045566 3 CSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQPVTV---AM-----------HDAPIKEVAWIPEMNLLATGSW-DKTLKY 66 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~---~~-----------~~~~v~~~~~~~~~~~~~~~~~-~~~i~~ 66 (112)
.++++|++++++++. .++.+.++++.....+... .. .....+++.++|++++++.... ...|.+
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 578899999998886 5889999999764433221 11 1245789999999998776643 556999
Q ss_pred eeCCCCC-ce---EEecC----CCeEEEEeeCCCEEEEEeC-CCcEEEEECc
Q 045566 67 WDTRQPN-PV---HTQQL----PDRCYALTVRYPLMVVGTA-DRNLVVFNLQ 109 (112)
Q Consensus 67 w~~~~~~-~~---~~~~~----~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~ 109 (112)
|++.... .+ ..... .-+.+.|+|+++++++... ++.|.++++.
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 9887654 12 12222 2268999999998877655 6678888876
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.38 E-value=6.4e-05 Score=42.61 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC----------eeEEEEccCCCEEEEeeCCCc-EEEeeCCCCCceEE
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP----------IKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHT 77 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~ 77 (112)
.+..++.+..++.+..+|..+++.+......... ...-....++ .+..+..++. +.+ |..+++.+..
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~ 198 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWS 198 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEE
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEE
Confidence 3667777887899999999999887766543321 1122222244 5556666665 555 9999886654
Q ss_pred ecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 78 QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.............+..+++++.++.+..||+++++
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECSS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 44222222255677888888899999999999875
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.2e-06 Score=50.78 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=59.4
Q ss_pred CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccC-CCEEEEeeCCCcEEEeeCCCCC
Q 045566 1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
|..++|+|..+ ++..++.+..+.+.|+++......+..+ ..+.+.+|.-+ ..++..|..+|.|.+||++...
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 45789999766 7888999999999999988887777766 78899999884 4566778889999999998654
No 296
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.33 E-value=0.00013 Score=43.93 Aligned_cols=109 Identities=9% Similarity=0.095 Sum_probs=73.0
Q ss_pred eeEEEcCCCCEEEEEcC----CCcEEEEEcCCC-CCcE---EEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCC
Q 045566 2 LCSTWKDDGTTVFSGGC----DKQVKMWPLLSG-GQPV---TVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQP 72 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~----~~~v~~~~~~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~ 72 (112)
..++++|++++|.+..+ ++.|..|.+... ..+. ...........++++|++++++.+. .++.+.++++...
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 35789999999988866 568998887754 2222 2332344557799999999888876 5899999999874
Q ss_pred CceEE----ec-------------CCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566 73 NPVHT----QQ-------------LPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN 110 (112)
Q Consensus 73 ~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~ 110 (112)
..+.. .. .+...+.++|+++++++... ...|.+|++..
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 32211 10 11246788999998888654 34688888765
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=1e-05 Score=53.22 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC-eEEEE
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-RCYAL 87 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~-~~~~~ 87 (112)
++..++.|+....+..+|+++.+..+......+.++ .+..+++.+.+|...|.|.+-|+++.+.++.+..+. ....|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~--imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVT--IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceE--EEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 344566666666777888887776665544444433 344468899999999999999999999999998765 45678
Q ss_pred eeCCCEEEEEeC---------CCcEEEEECcCC
Q 045566 88 TVRYPLMVVGTA---------DRNLVVFNLQNP 111 (112)
Q Consensus 88 ~~~~~~~~~~~~---------d~~v~~~d~~~~ 111 (112)
+-.|+.|++++. |.-|.+||+|+.
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhh
Confidence 889999999876 455789999875
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.3e-06 Score=53.67 Aligned_cols=101 Identities=19% Similarity=0.411 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCC-------CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec--
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-- 79 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-- 79 (112)
+.+.+++++.|.+|++|.++... +..++..|..+|+.+.|-.+-+.++++ |+-+.+||.--++.+....
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 45678899999999999986421 334667899999999998887777654 7889999986655443221
Q ss_pred ----CCCeEEEEee-CCCEEEEE-eCCCcEEEEECcCC
Q 045566 80 ----LPDRCYALTV-RYPLMVVG-TADRNLVVFNLQNP 111 (112)
Q Consensus 80 ----~~~~~~~~~~-~~~~~~~~-~~d~~v~~~d~~~~ 111 (112)
......++.. +...++.+ +...+|+++|.|..
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccc
Confidence 1122334332 34444444 66888999998764
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.30 E-value=5.7e-06 Score=48.54 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---eec-----cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMH-----DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~~-----~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|.+++|+.+...++++ .|-.+.+|++........+ +.| ..-|++..|+| ....++-.+..|.|++-|++.
T Consensus 175 iNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 175 INSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 4678888877777655 4678999998765544332 222 23578889999 566788888999999999985
Q ss_pred CCce------EEe-------------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 72 PNPV------HTQ-------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 72 ~~~~------~~~-------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.... ... ...+..+.|+++|+++++-.. -++.+||++.-
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 4211 100 012356789999998886644 37999998753
No 300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.29 E-value=0.00014 Score=44.23 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEE-E
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA-L 87 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~-~ 87 (112)
.+..+++++.++.+..+|..+++.+.............. .++..++.++.++.+..+|..+++.+........... .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 456788888889999999988887765543222111221 2466777888899999999999888766654332211 0
Q ss_pred eeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 88 TVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 88 ~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
...+..++.++.++.++.+|.++++
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCc
Confidence 1134567788889999999988764
No 301
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.6e-05 Score=50.26 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=60.1
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CC-eEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PD-RCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
...+..+.|+|.-..+|.+..+|.+.+..+. -+.+..+.. ++ ++++|.|+|+.+++|=.||+|++.|..++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 3567789999999999999999999988876 666666653 23 48999999999999999999999999876
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.25 E-value=3.2e-05 Score=43.85 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe-cCC--C---
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-QLP--D--- 82 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~-~~~--~--- 82 (112)
++..+++++.++.+..+|..+++....... ...+.... ...+..++.+..++.+..+|..+++.+... ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 566677778899999999989988776653 22211111 123455566667889999999999988773 321 1
Q ss_pred -eEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 83 -RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 83 -~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
........+..++.+..++.+..+|+++|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 122333347888888889999999998874
No 303
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=3.7e-06 Score=55.14 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=79.2
Q ss_pred eEEEcCCCCEEEEEc----CCCcEEEEEcCCCCCcE--EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC---
Q 045566 3 CSTWKDDGTTVFSGG----CDKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN--- 73 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~----~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~--- 73 (112)
-.+|+|...++++++ ..|.|.||- .++++-. +++. .+++++|+|..-.++.|-.-|.+.+|.-.+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 357999999998875 357898885 4555433 3333 34679999988888888889999999765543
Q ss_pred ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 74 PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
...+++.++..+.|+++|..++++..-|.+.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 334566788899999999999999999999999653
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.23 E-value=1.3e-05 Score=51.95 Aligned_cols=109 Identities=17% Similarity=0.344 Sum_probs=76.2
Q ss_pred eEEEcCCC--CEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCCc-e
Q 045566 3 CSTWKDDG--TTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-V 75 (112)
Q Consensus 3 ~~~~~~~~--~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~~-~ 75 (112)
.+.|+|.. .+-++......-.+|++..... ...+.+|...++.+.|+| ....+++++.|..+..||++.... +
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ 151 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF 151 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce
Confidence 45677743 3444444445566888754332 234568899999999999 556788999999999999987643 3
Q ss_pred EEe---cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 76 HTQ---QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 76 ~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
... ......+.|+.....+++.+....+.+||++.+
T Consensus 152 ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g 190 (1081)
T KOG0309|consen 152 YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG 190 (1081)
T ss_pred eeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence 222 123355777776777777788888999999876
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=8e-06 Score=48.39 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEE--EEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEV--AWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
++.+|.+.+.+|.|++||.+.-+. +.++.+|-..-.-+ .+.++...+++++.|...++|.++.+..+.+++.+
T Consensus 310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 567888888999999999986665 66677765433333 34456667888999999999999988877776654
No 306
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.17 E-value=0.00013 Score=44.39 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC-CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEE
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYAL 87 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 87 (112)
.+..++.++.++.+..+|..+++.+........ ....... .+..++.++.++.+.++|..+++.+.........+..
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~ 355 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIAS 355 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcccc
Confidence 355667777788888888777765544321111 1111111 3567888889999999999999888776543322222
Q ss_pred ee--CCCEEEEEeCCCcEEEE
Q 045566 88 TV--RYPLMVVGTADRNLVVF 106 (112)
Q Consensus 88 ~~--~~~~~~~~~~d~~v~~~ 106 (112)
+| .+..++.++.||.|+.+
T Consensus 356 sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 356 PPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEECCEEEEEeCCceEEEe
Confidence 22 34568889999998765
No 307
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.00035 Score=41.68 Aligned_cols=106 Identities=10% Similarity=0.134 Sum_probs=71.3
Q ss_pred eeEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCcE----EEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCC-Cc
Q 045566 2 LCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQP-NP 74 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~-~~ 74 (112)
.+..++|++++++++.. --.+.+|++..+.... .+ .....-.-+.|+|++++....+ .+++|.+|..... ..
T Consensus 148 H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 45678999999988853 2368899988665422 22 3445568899999999876655 4899999988764 22
Q ss_pred e---EEe---cC------CCeEEEEeeCCCEEEEEeCC-CcEEEEEC
Q 045566 75 V---HTQ---QL------PDRCYALTVRYPLMVVGTAD-RNLVVFNL 108 (112)
Q Consensus 75 ~---~~~---~~------~~~~~~~~~~~~~~~~~~~d-~~v~~~d~ 108 (112)
+ +.+ +. ....+.++++|++|+++... ..|.+|.+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 2 221 11 23568889999999887552 24555544
No 308
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.15 E-value=0.00041 Score=44.69 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=61.1
Q ss_pred CcEEEEEcCC-----CCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCCc------------eEEecC-
Q 045566 20 KQVKMWPLLS-----GGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNP------------VHTQQL- 80 (112)
Q Consensus 20 ~~v~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~------------~~~~~~- 80 (112)
+.|.+.|..+ .+....++ -......+.++|||++++.++ .+..+.+.|+.+.+. ......
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 5577888776 22333333 344558899999999876655 589999999977542 111111
Q ss_pred -CCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 81 -PDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.-....|+.+|....+--.|..|..||+.+
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 123567788888777778899999999764
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.13 E-value=5.5e-05 Score=50.91 Aligned_cols=105 Identities=15% Similarity=0.241 Sum_probs=69.7
Q ss_pred eEEEcCCCCEEEEEcC---C---CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCC
Q 045566 3 CSTWKDDGTTVFSGGC---D---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPN 73 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~---~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~ 73 (112)
.++|-.||.++|+.+- . ..+++|+ +.+....+...-.+--.+++|.|.|+++++... ...|.+|..+..
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL- 291 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL- 291 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc-
Confidence 5789999999998764 2 4688998 445433332222333457899999999988754 345666664332
Q ss_pred ceEEe-------cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 74 PVHTQ-------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 74 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.-..+ ...+..+.|+.++..|+..-.|. |.+|-..+
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 22222 12356789999999998877555 99996654
No 310
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=98.09 E-value=2.1e-05 Score=33.45 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=25.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEc
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPL 27 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~ 27 (112)
|.+++|+|....+|.++.+|.|.++.+
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 568999999999999999999999987
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=5.5e-05 Score=46.48 Aligned_cols=75 Identities=11% Similarity=0.202 Sum_probs=58.6
Q ss_pred eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC-CC-----ceEE------------ecCCCeEEEEeeCCCEEEEEeC
Q 045566 38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-PN-----PVHT------------QQLPDRCYALTVRYPLMVVGTA 99 (112)
Q Consensus 38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~-~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 99 (112)
-|.++|.++.+.+-+..+++....|.|.-|.... -+ .... .+....++.|+|++..+.+-+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 4678999999999888899999999999998763 11 1011 1122367899999999999999
Q ss_pred CCcEEEEECcCCC
Q 045566 100 DRNLVVFNLQNPQ 112 (112)
Q Consensus 100 d~~v~~~d~~~~~ 112 (112)
|..|+++++++++
T Consensus 222 DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 222 DRKVRGFVFKTGK 234 (558)
T ss_pred ccEEEEEEeccch
Confidence 9999999998874
No 312
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=6.7e-05 Score=50.38 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC---CCeE
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRC 84 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~---~~~~ 84 (112)
.+..++.|+..|.+...|....-... .=..-..+|++++|+.+|..++.|-.+|.|.+||...++.++.+.. +...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 34467888888999888865432211 1123467899999999999999999999999999999887766543 3332
Q ss_pred EE---EeeCCCEEEEEeCCCc
Q 045566 85 YA---LTVRYPLMVVGTADRN 102 (112)
Q Consensus 85 ~~---~~~~~~~~~~~~~d~~ 102 (112)
+- +..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 22 2223445666665554
No 313
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.03 E-value=1.4e-05 Score=31.34 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.3
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWP 26 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~ 26 (112)
|.+++|++.++.+++++.|+.+++|+
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46889999889999999999999985
No 314
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.00046 Score=43.70 Aligned_cols=107 Identities=12% Similarity=0.233 Sum_probs=69.9
Q ss_pred CeeEEEcCCCCEEEEEcC---CCcEEEEEcCCC-C---CcEEEeeccCCeeEEEEccCCCEEEEee---CCCcEEEeeCC
Q 045566 1 VLCSTWKDDGTTVFSGGC---DKQVKMWPLLSG-G---QPVTVAMHDAPIKEVAWIPEMNLLATGS---WDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~---~~~v~~~~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~i~~w~~~ 70 (112)
|...+|-|.|..+++-+. ..++.+|.+++. . .+.++.. ...+.+.|+|.|++++.+. ..|.+.++|..
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 456889999988766433 356888887732 2 2223332 4557899999999887654 46889999986
Q ss_pred CC--CceEEe-cCCCeEEEEeeCCCEEEEEeCC------CcEEEEECc
Q 045566 71 QP--NPVHTQ-QLPDRCYALTVRYPLMVVGTAD------RNLVVFNLQ 109 (112)
Q Consensus 71 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~d------~~v~~~d~~ 109 (112)
.. +..... ....+.+-|+|.|+++.+++.. ..-++|+++
T Consensus 526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 526 YADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 42 222111 1233567899999999998763 345566543
No 315
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.88 E-value=0.00093 Score=41.84 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=69.1
Q ss_pred eEEEcCCCCEEEEEc------C-----CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe--eCCCcEEEeeC
Q 045566 3 CSTWKDDGTTVFSGG------C-----DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG--SWDKTLKYWDT 69 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~------~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~i~~w~~ 69 (112)
.+.|.+.|.++.+-- . ...+.++++......... .-.++|+...|.|.++.|++. -..-.+.++|+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccc
Confidence 466778777654321 1 134667776533333332 457899999999987776544 46777889998
Q ss_pred CCCCceEEecCCCeEEEEeeCCCEEEEEeCC---CcEEEEECc
Q 045566 70 RQPNPVHTQQLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQ 109 (112)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~ 109 (112)
+..-...........+.|+|.+++++.++.| |.+.+||..
T Consensus 306 r~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 306 RGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccceEEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 8762222223445678888999888887765 567788754
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=0.0012 Score=38.33 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC--C-eEEE
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--D-RCYA 86 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~--~-~~~~ 86 (112)
..+++.|+..+.+.--|..+++...+-. -...+.+-+.- -+.+++.|+.++.+++.+++++..+..+... + ....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 3567778888888888888777654321 11122221111 3778999999999999999999777665432 2 2345
Q ss_pred EeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 87 LTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 87 ~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.++++..+..++.|+..+..|.++.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc
Confidence 6788999999999999999988763
No 317
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.87 E-value=0.00025 Score=41.98 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=51.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc-----EEEeec------------cCCeeEEEEcc--CCCEEEEeeCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-----VTVAMH------------DAPIKEVAWIP--EMNLLATGSWD 61 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~-----~~~~~~------------~~~v~~~~~~~--~~~~~~~~~~~ 61 (112)
|+++.|...|.++++|...|.|.+|.-...... ..++.| ...|..+.|-. .-.+++..+.|
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 578889999999999999999999875432211 123333 23567788765 33578888899
Q ss_pred CcEEEeeCCCC
Q 045566 62 KTLKYWDTRQP 72 (112)
Q Consensus 62 ~~i~~w~~~~~ 72 (112)
++|++|-+...
T Consensus 109 ktiKlWKiyek 119 (460)
T COG5170 109 KTIKLWKIYEK 119 (460)
T ss_pred ceeeeeeeecc
Confidence 99999987543
No 318
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.86 E-value=0.00016 Score=30.78 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=26.5
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566 40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69 (112)
Q Consensus 40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~ 69 (112)
...|.++.|+|...+++.+..+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 356889999999999999999999999988
No 319
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=8.2e-05 Score=47.11 Aligned_cols=108 Identities=14% Similarity=0.246 Sum_probs=70.5
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe--eccCCeeEEEEcc--CCCEEEEe-eCCCcEEEeeCCCCCceEE
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIP--EMNLLATG-SWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~~~~~-~~~~~i~~w~~~~~~~~~~ 77 (112)
++.|-.+.+.++ +.|+.+++||.-.+.++.... ...+.+.-+.--+ +...+..+ +...+++++|-+.......
T Consensus 789 ~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 789 DIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred ceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence 344444445544 557889999987776654321 1222223233222 34444444 6678899999988765543
Q ss_pred ec--------CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 78 QQ--------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 78 ~~--------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
.+ ...++++..+.|+.++++-.+|.+.+.|.|+|+
T Consensus 867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 32 124688889999999999999999999999874
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=1.8e-05 Score=52.17 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=60.1
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
++++||+|..-.|+.|=..|.+.+|...+.+.-.....|..++..+.|+++|..++++..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3578999998899999889999999877665544455799999999999999999999999999999654
No 321
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00017 Score=48.62 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=50.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEE---ccCCCEEEEeeCCCc
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW---IPEMNLLATGSWDKT 63 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~ 63 (112)
|++++|+.+|..++.|-.+|.|.+||+..++....+..+..+.+.+-+ ..++..+.++...|.
T Consensus 133 Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 133 VTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 679999999999999999999999999998988888766666555444 345556777777775
No 322
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.79 E-value=0.0017 Score=37.32 Aligned_cols=106 Identities=16% Similarity=0.062 Sum_probs=67.6
Q ss_pred eeEEEcCCCCEEEEEcCC--------CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCC
Q 045566 2 LCSTWKDDGTTVFSGGCD--------KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQP 72 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~ 72 (112)
+.++++|+|++.++.... +.+..++.. .............+.++|+|+++.++ +-+..+.|..+++...
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 568899999977766543 446666654 33333333445668999999998665 5566788998888643
Q ss_pred Cc-e------EEecCC---CeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 73 NP-V------HTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 73 ~~-~------~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.. + ...... ...++++.+|++.++....+.|.++|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 32 1 112222 2468888889877777778889998865
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.0018 Score=37.63 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
-|.+++.|+.++.+.+.+.+++.....+...+.--..-...+++..+..++.|+..+..|.++..++...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 366788999999999999999988777653322222334567899999999999999999999887766543
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0006 Score=44.72 Aligned_cols=90 Identities=19% Similarity=0.084 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE--EecCCCeEEE
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH--TQQLPDRCYA 86 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~--~~~~~~~~~~ 86 (112)
.+++++-|..+|.|++++.. +.+ .+...|... .-+|.++++|+.||.+.+-.+-+.+... .+..+..+++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksia 119 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIA 119 (846)
T ss_pred hcceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEE
Confidence 46789999999999999864 333 222223222 4479999999999999999887776554 4566778999
Q ss_pred EeeC-----CCEEEEEeCCCcEEEEE
Q 045566 87 LTVR-----YPLMVVGTADRNLVVFN 107 (112)
Q Consensus 87 ~~~~-----~~~~~~~~~d~~v~~~d 107 (112)
++|+ ..++++|+.-| +.++.
T Consensus 120 l~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 120 LHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred eccchhhhhhhheeecCcce-EEEeh
Confidence 9997 35677777766 66653
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00023 Score=45.86 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=55.0
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EE-----eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TV-----AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
..+.+++..++|.|+..|.|.++-+....+.. .+ ..|...|++++|++++..+.+|...|.|.+-.+..
T Consensus 81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 45677888888999999999999876643322 11 23678899999999999999999999999887765
No 326
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.0021 Score=42.54 Aligned_cols=96 Identities=10% Similarity=0.233 Sum_probs=69.9
Q ss_pred EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc---CC-CEEEEeeCCCcEEEeeCCCCCceEEecCCCe---E
Q 045566 12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP---EM-NLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---C 84 (112)
Q Consensus 12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~---~ 84 (112)
.++++...|.|-+||.........+..+..++..+.|-+ +. ..++.-....++.+|+..+++....+..... +
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 567788899999999988777777777888888888876 33 4566667788999999999998877765432 3
Q ss_pred EEEee-CCCEEEEEeCCCcEEEEE
Q 045566 85 YALTV-RYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 85 ~~~~~-~~~~~~~~~~d~~v~~~d 107 (112)
+.++| +.+++..-+..|.+.+-+
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEe
Confidence 44455 445666666666665544
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.68 E-value=0.004 Score=38.51 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=71.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-------------------------------------------cEEEe
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-------------------------------------------PVTVA 37 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~-------------------------------------------~~~~~ 37 (112)
|+.+.|+++..-|+++...|.|-+|....++. ...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 57889999988899999999998875421100 00112
Q ss_pred eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-----------CCeEEEEee-----CC---CEEEEEe
Q 045566 38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-----------PDRCYALTV-----RY---PLMVVGT 98 (112)
Q Consensus 38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-----------~~~~~~~~~-----~~---~~~~~~~ 98 (112)
...++|++++.+. --+++.|..+|.+.+.|+|.+..+..-.. ..+.+.|.. ++ ..+++|.
T Consensus 84 ~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 2467889998874 44889999999999999998876654211 113444442 22 3788899
Q ss_pred CCCcEEEEECc
Q 045566 99 ADRNLVVFNLQ 109 (112)
Q Consensus 99 ~d~~v~~~d~~ 109 (112)
..|.+.+|.+.
T Consensus 163 n~G~v~~fkIl 173 (395)
T PF08596_consen 163 NSGNVLTFKIL 173 (395)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999998764
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.65 E-value=7e-06 Score=52.14 Aligned_cols=105 Identities=15% Similarity=0.284 Sum_probs=70.5
Q ss_pred eeEEEcC-CCCEEEEEc----CCCcEEEEEcCCC--CCc--EEEe-eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 2 LCSTWKD-DGTTVFSGG----CDKQVKMWPLLSG--GQP--VTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 2 ~~~~~~~-~~~~l~~~~----~~~~v~~~~~~~~--~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
++++|++ |.+.||.|- .|..+.+||+.+. .+. ..+. +......+++|..+.+++.+|...+.+.++|++.
T Consensus 106 t~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 106 TSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred cccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 5788888 667777773 3567999998765 221 1222 2344556888888889999999999999999984
Q ss_pred CC-ceEEecC-CCeEEEEee-CCCEEEEEeCCCcEEEEE
Q 045566 72 PN-PVHTQQL-PDRCYALTV-RYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 72 ~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~d~~v~~~d 107 (112)
.. ....+.. -+..+.+.| .+.+++. ..|+.+.+||
T Consensus 186 s~~~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD 223 (783)
T KOG1008|consen 186 SLDSVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWD 223 (783)
T ss_pred hhhhhhhhhhhhcccceecCCCCCceec-cccCceeecc
Confidence 32 2222222 234556666 5555554 4599999999
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.64 E-value=0.0017 Score=44.61 Aligned_cols=107 Identities=12% Similarity=0.214 Sum_probs=68.8
Q ss_pred eEEEcCCCCEEEEE-----cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee---CCCcEEEeeCCCCCc
Q 045566 3 CSTWKDDGTTVFSG-----GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS---WDKTLKYWDTRQPNP 74 (112)
Q Consensus 3 ~~~~~~~~~~l~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~i~~w~~~~~~~ 74 (112)
+++|--||.++++. .....+++||-. +..-.+-......-.+++|-|.|..+++-. .+..|.++..+..+.
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 58899999999883 333789999954 333222222333446899999999888753 345688887543221
Q ss_pred e-----EEec-CCCeEEEEeeCCCEEEE---EeCCCcEEEEECcC
Q 045566 75 V-----HTQQ-LPDRCYALTVRYPLMVV---GTADRNLVVFNLQN 110 (112)
Q Consensus 75 ~-----~~~~-~~~~~~~~~~~~~~~~~---~~~d~~v~~~d~~~ 110 (112)
- .... .++..++|+.++..|++ ......|.+|-+.+
T Consensus 279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 1 1111 12677899999988887 44445599997654
No 330
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.64 E-value=0.0038 Score=38.44 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=55.0
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC-eeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEee
Q 045566 11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV 89 (112)
Q Consensus 11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (112)
..++.++.++.+...|..+++........... ...... .+..++.++.+|.+...|..+++.+...+.......-+|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 34455555666666666555543322110000 111111 245667788899999999999887766644221111111
Q ss_pred --CCCEEEEEeCCCcEEEEEC
Q 045566 90 --RYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 90 --~~~~~~~~~~d~~v~~~d~ 108 (112)
.+..+++++.||.++.+++
T Consensus 373 ~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEECCEEEEEeCCceEEEEeC
Confidence 3557899999999988764
No 331
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.00016 Score=47.14 Aligned_cols=108 Identities=8% Similarity=0.096 Sum_probs=79.1
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEe
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQ 78 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~ 78 (112)
..+.|+.+...|-+...+|.|.+|-+..+.-.... ....+-|.++.|..+|..++....||.|.+=.+...+.- ..+
T Consensus 75 ~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 75 MVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred EEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc
Confidence 45789988899999999999999998766543322 234567889999999999999999999988766543321 111
Q ss_pred cC-CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 79 QL-PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+. ....+.|+++.+.++.+-.+|.+.++|..
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred chheccceeecccHHHHHhhhcCCcEEEeccc
Confidence 11 12356778888888888888888888753
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.59 E-value=0.0056 Score=37.71 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC-Ce-e-----EEEEcc--CCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA-PI-K-----EVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v-~-----~~~~~~--~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
.+..+++++.++.+.-+|..+++.+........ .. . .+.-.| .+..++.++.++.+..+|.++++.+....
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 456777788889999999988887765432110 00 0 000111 34566677788999999999998877665
Q ss_pred CCCeEEE-EeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 80 LPDRCYA-LTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
....... -...+..++.+..++.+..+|.++|+
T Consensus 148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGA 181 (394)
T ss_pred CCCceecCCEEECCEEEEECCCCEEEEEEccCCC
Confidence 4332111 00124567778888889999988775
No 333
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.0056 Score=39.82 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=58.1
Q ss_pred eeEEEcCCCCEEEEEc------CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC------------Cc
Q 045566 2 LCSTWKDDGTTVFSGG------CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD------------KT 63 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------~~ 63 (112)
.+.+++|+|+.++... .|..-.+|-...+.....+.. ....+.-.|+|+|..+.+.... +.
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence 4678899999876654 244334443322322233321 2236778899997766555322 23
Q ss_pred EEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEE
Q 045566 64 LKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVV 105 (112)
Q Consensus 64 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~ 105 (112)
+.+.++..+.....+...+..+.|+|+|..++... +++|.+
T Consensus 432 l~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 432 LARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 33334433332223345678899999999877765 456655
No 334
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.58 E-value=0.0042 Score=36.18 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=68.7
Q ss_pred eEEEcCCCCEEEEEcCCC--cEEEEEcCCCCCcEEEeeccC-CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 3 CSTWKDDGTTVFSGGCDK--QVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~--~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
.+.|..++.++-+.+.-| .|+.+|+.+++......-... --..+... +...+...-.++...+||..+.+.+..+.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 355655677777776655 688899888876554431111 11122222 23344445568889999999988888887
Q ss_pred CCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 80 LPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.+.....+..++..++.+.....++++|..+.
T Consensus 128 y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 128 YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp -SSS--EEEECSSCEEEE-SSSEEEEE-TTT-
T ss_pred cCCcceEEEcCCCEEEEECCccceEEECCccc
Confidence 77666666788889999988889999997764
No 335
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.57 E-value=0.0041 Score=35.75 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=63.0
Q ss_pred eeEEEcCCCCEEE-EEcCCCcEEEEEcCCCCC-c---EEE---eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566 2 LCSTWKDDGTTVF-SGGCDKQVKMWPLLSGGQ-P---VTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 2 ~~~~~~~~~~~l~-~~~~~~~v~~~~~~~~~~-~---~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
+.++|+|+++.|+ +-+..+.|..+++..... + ..+ .......-.+++.++|..+++....+.|.+++.+ ++
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 4689999998775 557778899998864332 1 122 1111236689999999998888889999999987 66
Q ss_pred ceEEecCC---CeEEEEe-eCCCEEEEE
Q 045566 74 PVHTQQLP---DRCYALT-VRYPLMVVG 97 (112)
Q Consensus 74 ~~~~~~~~---~~~~~~~-~~~~~~~~~ 97 (112)
.+..+..+ .+.++|. ++...|++.
T Consensus 216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 66655444 3566773 455555544
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.56 E-value=0.0067 Score=38.11 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=34.2
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCceEEecCC-CeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 52 MNLLATGSWDKTLKYWDTRQPNPVHTQQLP-DRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 52 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
|..+...+ ++.|.+||..+++.+..+..+ +..+.|++++++++..+.+ .+.+++.
T Consensus 117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 55554443 347888999888888888776 4788888888888888755 5767653
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0025 Score=42.39 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=66.6
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC-eeEEEEccCCCEEEEeeCCC-----cEEEeeCCCC-----
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIPEMNLLATGSWDK-----TLKYWDTRQP----- 72 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~-----~i~~w~~~~~----- 72 (112)
-+|++++..++.|+.+|.|.+.+ +.-+.+..+..++.. +..+....+..++++.+.|. .+++|++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 36788899999999999998887 333444555555555 44443333445666665543 4899998532
Q ss_pred -Cce---EEec-------CCCeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566 73 -NPV---HTQQ-------LPDRCYALTVRYPLMVVGTADRNLVVF 106 (112)
Q Consensus 73 -~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~d~~v~~~ 106 (112)
+++ +... .+...++++.+-..+++|=.+|.|..+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~ 152 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY 152 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence 222 1111 234577788888888888888888766
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.50 E-value=0.00092 Score=44.43 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=45.5
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~ 68 (112)
|++-+. ..+||+|+.+|.|++||- .+.... .+++-..+|..+..+.+|+++++.+.. .+.+++
T Consensus 582 ~~aTt~-~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 582 CFATTE-DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID 645 (794)
T ss_pred EEEecC-CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence 444443 347789999999999994 343333 456778999999999999998877655 444444
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.46 E-value=0.0066 Score=35.40 Aligned_cols=101 Identities=17% Similarity=0.272 Sum_probs=60.5
Q ss_pred cCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE----------
Q 045566 7 KDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH---------- 76 (112)
Q Consensus 7 ~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~---------- 76 (112)
...++.|+.|+++| +.+++........... +...|..+...++-+.++.-. |+.+.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 34678899999888 8899883333333332 233489999998777666554 4999999986543222
Q ss_pred -----EecCCCeEEEEe----eCCCEEEEEeCCCcEEEEECcC
Q 045566 77 -----TQQLPDRCYALT----VRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 77 -----~~~~~~~~~~~~----~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.......+..|. ..+...++.....++.+|....
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~ 123 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND 123 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence 111111223333 2344445555566888877654
No 340
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.0021 Score=36.49 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcE-EEeeccCCeeE-EEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec----CCCe
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKE-VAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ----LPDR 83 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~----~~~~ 83 (112)
+..+++|+.+|.|.+|......... ........+-+ +.-..++.+..+++.++.|+.|+..-.+.+.... .+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 4678889999999999865222211 11111222222 2222355678889999999999987666543221 2223
Q ss_pred EEEEeeCCCEEEEE--eCCCcEEEEECcC
Q 045566 84 CYALTVRYPLMVVG--TADRNLVVFNLQN 110 (112)
Q Consensus 84 ~~~~~~~~~~~~~~--~~d~~v~~~d~~~ 110 (112)
.......++.+... +.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 33344455556555 6677777777653
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.011 Score=37.06 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=60.0
Q ss_pred EEEcCCCCEEEEE-cCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe-eCCCc--EEEeeCCCCCceE-
Q 045566 4 STWKDDGTTVFSG-GCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKT--LKYWDTRQPNPVH- 76 (112)
Q Consensus 4 ~~~~~~~~~l~~~-~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~--i~~w~~~~~~~~~- 76 (112)
-+|+|+|++++.+ ..|+. +.++|+......+ +....+.-..=.|+|+|+.++-. +..|. |.+.+.......+
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 4799999887655 55665 5555666555332 33222222355688999877644 34555 5555665554322
Q ss_pred EecC-CCeEEEEeeCCCEEEEEeCC-Cc--EEEEECc
Q 045566 77 TQQL-PDRCYALTVRYPLMVVGTAD-RN--LVVFNLQ 109 (112)
Q Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~~~d-~~--v~~~d~~ 109 (112)
+... ....-.++|+|.+++..+.. |. |.+.|+.
T Consensus 322 T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 322 TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 2222 22356788999988777643 33 4455543
No 342
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0038 Score=38.86 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=76.6
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC------CCC---------cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS------GGQ---------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~------~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 65 (112)
|.++.+.|.+..+.+....|.|..|.... .+. +..+........++.|+|++..+.+-..|..|+
T Consensus 147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR 226 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR 226 (558)
T ss_pred eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence 35677788888888888889999998762 111 112233455678999999999999999999999
Q ss_pred EeeCCCCCceEEecC------------------------------------CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 66 YWDTRQPNPVHTQQL------------------------------------PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 66 ~w~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
++++++++.++.+.. ......|+..+++++-++.-| |++.++.
T Consensus 227 ~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 227 GFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred EEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence 999988764332210 113567788888887776544 6666665
Q ss_pred CC
Q 045566 110 NP 111 (112)
Q Consensus 110 ~~ 111 (112)
++
T Consensus 306 tn 307 (558)
T KOG0882|consen 306 TN 307 (558)
T ss_pred cC
Confidence 54
No 343
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.39 E-value=0.0083 Score=35.11 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=34.1
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 39 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
....|..+..+|+|..+++...+|.+.+|++.+.+.....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 3567899999999999999999999999999876655443
No 344
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.38 E-value=0.022 Score=39.62 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=50.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~ 68 (112)
|.++.|..+...++.+..+|.+.+-|..+... ...-.-..+|.+++|+|++..++..+..+++.+-+
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 45677777888888888889998887654332 22223467899999999999998888877777653
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.012 Score=36.30 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=74.9
Q ss_pred eEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee-CCCcEEEeeCCCCCceE-E
Q 045566 3 CSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVH-T 77 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~~~-~ 77 (112)
.++++|+++.+.++.. ++.+.+.|..+.+.......-..+ ..+++.|++..+.... .++.+.+.|........ .
T Consensus 120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~ 198 (381)
T COG3391 120 GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS 198 (381)
T ss_pred eEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence 5789999987776654 688889998888877775543344 8899999998665554 68889999976655443 1
Q ss_pred ----e--cCCCeEEEEeeCCCEEEEEeCC---CcEEEEECcCC
Q 045566 78 ----Q--QLPDRCYALTVRYPLMVVGTAD---RNLVVFNLQNP 111 (112)
Q Consensus 78 ----~--~~~~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~ 111 (112)
. ........+.+++..+++.... +.+...|..++
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 1 1122457788888876665544 47777776654
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.35 E-value=0.0096 Score=39.94 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=64.2
Q ss_pred CEEEEEcCCCcEEEEEcCCCC-CcEE--E--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC---ceEEecCCC
Q 045566 11 TTVFSGGCDKQVKMWPLLSGG-QPVT--V--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---PVHTQQLPD 82 (112)
Q Consensus 11 ~~l~~~~~~~~v~~~~~~~~~-~~~~--~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~---~~~~~~~~~ 82 (112)
...+.|-.+..+..||++-.. .+.. . ......+.|++-..+| +++.|+.+|.|++||--..+ .+..+..++
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 345667778889999988643 2221 1 1234567787777666 68899999999999943222 223344577
Q ss_pred eEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 83 RCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
..+..+.+|+++++.+.. .+.+++.
T Consensus 622 ~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEeecc-eEEEEEE
Confidence 888899999988877654 4555553
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.32 E-value=0.015 Score=36.60 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=54.3
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEe-eCCCCCceEEecC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW-DTRQPNPVHTQQL 80 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w-~~~~~~~~~~~~~ 80 (112)
..++++|+|+++++++ +|.-.++....... ... +.-....|.+.+ .++.-..++.|.++ ++.+ .....+..
T Consensus 36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~--k~~---G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~-~~~k~i~~ 107 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRN--KAF---GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN-EVVKSIKL 107 (443)
T ss_dssp SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE--EEE---EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE--TT-----
T ss_pred eeEEECCCCCEEEEEc-CCEEEEEEccCCcc--ccc---CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-ccceEEcC
Confidence 4789999999998854 67777887322222 111 223567898854 46777778889996 4432 33233444
Q ss_pred CCeEEEEeeCCCEEEEEeCCCcEEEEECcCCC
Q 045566 81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 112 (112)
+...-.+-. |..|...+.+ .|.+||+.+++
T Consensus 108 ~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~ 137 (443)
T PF04053_consen 108 PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK 137 (443)
T ss_dssp SS-EEEEE--SSSEEEEETT-EEEEE-TTT--
T ss_pred CcccceEEc-CcEEEEECCC-CEEEEEhhHcc
Confidence 433322222 7777776655 89999988753
No 348
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.31 E-value=0.012 Score=35.11 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=41.9
Q ss_pred EEEcCCCCEEEEE-----cCCCcEEEEEcC-CCCCcEEEeeccCCeeEEEEccCCCEEEEe
Q 045566 4 STWKDDGTTVFSG-----GCDKQVKMWPLL-SGGQPVTVAMHDAPIKEVAWIPEMNLLATG 58 (112)
Q Consensus 4 ~~~~~~~~~l~~~-----~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 58 (112)
-.|+++|++|++. ...|.|-+||.. ..+.+.++..+.-.-+.+.+.|+++.++.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 4699999999886 335789999988 455566777676666888899999777665
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.26 E-value=7.8e-05 Score=47.68 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=76.2
Q ss_pred eeEEEcC--CCCEEEEEcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEcc-CCCEEEEee----CCCcEEEeeCCCC
Q 045566 2 LCSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIP-EMNLLATGS----WDKTLKYWDTRQP 72 (112)
Q Consensus 2 ~~~~~~~--~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~----~~~~i~~w~~~~~ 72 (112)
.|++++- +...+++|..+|.|-+-..+...- ....+++....++++|.+ |..++++|- .+..+.+||..+.
T Consensus 60 kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ 139 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSL 139 (783)
T ss_pred eeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccc
Confidence 3555544 335788999999999887764332 234567778889999998 777777763 3566899998765
Q ss_pred C--ce--EEe----cCCCeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 73 N--PV--HTQ----QLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 73 ~--~~--~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
- +. ..+ .....+++|..+.+.+++|...+.+.++|+|.
T Consensus 140 ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 140 LTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred cCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 2 11 111 11335677777888899999999999999883
No 350
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.24 E-value=0.015 Score=36.28 Aligned_cols=78 Identities=13% Similarity=-0.012 Sum_probs=51.3
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeE-EEEccC-----------------CC-EEEEeeCCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKE-VAWIPE-----------------MN-LLATGSWDK 62 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~-----------------~~-~~~~~~~~~ 62 (112)
.+++.+|.+++.++...-|.|.++|+.++..++..++.++.-.. +....+ .. +++-....|
T Consensus 311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg 390 (415)
T PF14655_consen 311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG 390 (415)
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence 57889999999998888899999999887776665554433111 111000 01 223455678
Q ss_pred cEEEeeCCCCCceEEec
Q 045566 63 TLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 63 ~i~~w~~~~~~~~~~~~ 79 (112)
.+.+|+++++..+..+.
T Consensus 391 ~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 391 ILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eEEEEecCCCCEEEEEE
Confidence 88888888887765553
No 351
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.16 E-value=0.03 Score=36.72 Aligned_cols=50 Identities=8% Similarity=0.107 Sum_probs=34.2
Q ss_pred CcEEEeeCCC-----CCceEEecCC--CeEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566 62 KTLKYWDTRQ-----PNPVHTQQLP--DRCYALTVRYPLMVVGTA-DRNLVVFNLQNP 111 (112)
Q Consensus 62 ~~i~~w~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~ 111 (112)
+.|.+.|.++ .+.+..+..+ ...+.++|+|+++++++. +..+.+.|+.+.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 4577777766 2333333332 356788999998877665 788999998763
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.10 E-value=0.0058 Score=37.17 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=60.1
Q ss_pred cCCCCEEEEEc---------CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE
Q 045566 7 KDDGTTVFSGG---------CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 7 ~~~~~~l~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 77 (112)
|||+++++... ..+...++|+.+++.. .+......+....|+|+|+.++-.. ++.|.+.+..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57888777642 2456888998765432 2222256778899999999887764 57899988766533211
Q ss_pred e-c-------------------CCCeEEEEeeCCCEEEEEeCC-CcEEEE
Q 045566 78 Q-Q-------------------LPDRCYALTVRYPLMVVGTAD-RNLVVF 106 (112)
Q Consensus 78 ~-~-------------------~~~~~~~~~~~~~~~~~~~~d-~~v~~~ 106 (112)
- . .....+-|+|++++|+....| ..|..+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 1 0 112578899999988776554 334433
No 353
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.10 E-value=0.021 Score=38.13 Aligned_cols=71 Identities=27% Similarity=0.295 Sum_probs=48.5
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCC----------CCC---cEEE--------eeccCCeeEEEEccC---CCEEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLS----------GGQ---PVTV--------AMHDAPIKEVAWIPE---MNLLA 56 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~---~~~~~ 56 (112)
|..+..+|+|+.++..+..+.. |-.+.. ++. .+++ ......|..+.|+|. +.+++
T Consensus 87 v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred EEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 4568899999999988886644 333321 111 1111 123457889999994 58999
Q ss_pred EeeCCCcEEEeeCCCC
Q 045566 57 TGSWDKTLKYWDTRQP 72 (112)
Q Consensus 57 ~~~~~~~i~~w~~~~~ 72 (112)
.-..|+.+++||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 9999999999998643
No 354
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.92 E-value=0.034 Score=33.26 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=64.4
Q ss_pred eEEEcC-CCCEEEEEcCCCc-EEEEEcCCCCCcEEEeeccCC--eeEEEEccCCCEEEEee-----CCCcEEEeeCC-CC
Q 045566 3 CSTWKD-DGTTVFSGGCDKQ-VKMWPLLSGGQPVTVAMHDAP--IKEVAWIPEMNLLATGS-----WDKTLKYWDTR-QP 72 (112)
Q Consensus 3 ~~~~~~-~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~-----~~~~i~~w~~~-~~ 72 (112)
.++.+| ....++.+-.-|. ..++|..+++....+....+. .---.|+++|+++++.- ..|.|-+||.. ..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 577888 5566677766664 678999988887766432222 12356999999998863 35789999998 44
Q ss_pred CceEEecCC---CeEEEEeeCCCEEEEE
Q 045566 73 NPVHTQQLP---DRCYALTVRYPLMVVG 97 (112)
Q Consensus 73 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 97 (112)
+.+..+... -..+.+.|+++.|+++
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 555555432 2346678888777665
No 355
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.91 E-value=0.071 Score=36.85 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=54.8
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEe----eCCCCC--ceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566 40 DAPIKEVAWIPEMNLLATGSWDKTLKYW----DTRQPN--PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVF 106 (112)
Q Consensus 40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~ 106 (112)
...|.++.+-++...++.+..+|.|.+. +..+.. .+-.+...+.+++|+|+++.++..+.++++.+-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 4678999999999889999999999998 544432 445667788999999999999999999888764
No 356
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.89 E-value=0.0072 Score=25.13 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCeeEEEEccC-C--CEEEEeeCCCcEEEeeCCC
Q 045566 41 APIKEVAWIPE-M--NLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 41 ~~v~~~~~~~~-~--~~~~~~~~~~~i~~w~~~~ 71 (112)
+.+.++.|+|+ + .+++-.-..+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 35778889873 3 4777777788899998885
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.88 E-value=0.051 Score=34.72 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccC------Cee--EEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA------PIK--EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
+..++.++.++.+.-.|..+++.+........ .+. .+... ++..++.++.++.+.-+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45567778889999999988887766543221 000 01111 2256777888999999999999988776543
Q ss_pred CeE-----EEEee--CCCEEEEEe---------CCCcEEEEECcCCC
Q 045566 82 DRC-----YALTV--RYPLMVVGT---------ADRNLVVFNLQNPQ 112 (112)
Q Consensus 82 ~~~-----~~~~~--~~~~~~~~~---------~d~~v~~~d~~~~~ 112 (112)
... +.-.| .+..++.++ .++.+..+|..+++
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 210 11111 224455554 35678888887764
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.75 E-value=0.023 Score=28.80 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=40.9
Q ss_pred eeEEEEcc---CC-CEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEee-CCCEEEEEeCCCcEEEEEC
Q 045566 43 IKEVAWIP---EM-NLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 43 v~~~~~~~---~~-~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~d~ 108 (112)
|+++++.. +| ..++.|+.|..|++|+- ...+...........+.+ .+..++-+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 44555543 32 57889999999999874 345555555444333332 3456777888888877764
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.052 Score=32.65 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=59.8
Q ss_pred eeEEEcCCCCEEEEEc-CCCcEEEEEcCC--C---CCc--EEEeeccCCeeEEEEccCCCEEEEeeCCC-cEEEeeCCCC
Q 045566 2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLS--G---GQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDK-TLKYWDTRQP 72 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~--~---~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~i~~w~~~~~ 72 (112)
+.++|||+++.+..+. ..+.+.-+++.. + ... ..+....+..=.++...+|.+.+++..++ .|..|+.. +
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 4689999998887764 457777777642 1 111 11122234445567777888886555554 79999987 7
Q ss_pred CceEEecCC---CeEEEEe-eCCCEEEEEeC
Q 045566 73 NPVHTQQLP---DRCYALT-VRYPLMVVGTA 99 (112)
Q Consensus 73 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~~ 99 (112)
+.+..+..+ ...++|- ++.+.|++.+.
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 777776665 3455663 34455554443
No 360
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.05 Score=32.39 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=70.8
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEE--
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-- 77 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~-- 77 (112)
++++.|+|+.+.|++..+...-.++-..+++.+.+++-. -.....+.+..++++.++--.++.+.++.+........
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence 568999999999888887777777766778877766421 22334667776777776666788888887755432211
Q ss_pred ---ec--------CCCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 78 ---QQ--------LPDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 78 ---~~--------~~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
+. ..-..+++++....++..=.-.-+.||.+
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 11 11246788888777777766555665543
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.65 E-value=0.071 Score=33.17 Aligned_cols=106 Identities=8% Similarity=0.097 Sum_probs=61.7
Q ss_pred eEEEcCCCCEEEEE-cCC----CcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCC-----------cEE
Q 045566 3 CSTWKDDGTTVFSG-GCD----KQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDK-----------TLK 65 (112)
Q Consensus 3 ~~~~~~~~~~l~~~-~~~----~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~i~ 65 (112)
..+++|++++++.+ +.. ..++++|+.+++.+... ... ....+.|.+++..++....+. .|.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 56899999988765 332 45999999988655422 221 112399999987765543322 367
Q ss_pred EeeCCCCCce--EEecC--CC---eEEEEeeCCCEEEEEeCC----CcEEEEECcC
Q 045566 66 YWDTRQPNPV--HTQQL--PD---RCYALTVRYPLMVVGTAD----RNLVVFNLQN 110 (112)
Q Consensus 66 ~w~~~~~~~~--~~~~~--~~---~~~~~~~~~~~~~~~~~d----~~v~~~d~~~ 110 (112)
.|.+.+...- ..+.. .. ..+..+.++++++..... ..+.+.|+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 7777665432 22322 11 245567788877654332 3466667654
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.60 E-value=0.07 Score=32.50 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=68.1
Q ss_pred eEEEcCCCCEEEEEc----------CCCcEEEEEcCCCCCcEEEe--ec-cC----CeeEEEEccCCCEEEEeeC--CCc
Q 045566 3 CSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTVA--MH-DA----PIKEVAWIPEMNLLATGSW--DKT 63 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~----------~~~~v~~~~~~~~~~~~~~~--~~-~~----~v~~~~~~~~~~~~~~~~~--~~~ 63 (112)
.+..+|+++.++++. ..-.|.+||..+..+..++. .. .. ....++++.++++++.... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 456789999887653 23468999998877665442 21 11 1234567777877765544 345
Q ss_pred EEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 64 LKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 64 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
|.+-|+...+.+..+..+.-...+-...+.+.+-|.||++.-..+.
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEEC
Confidence 7788888877777776665555554444568888889888766654
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.60 E-value=0.089 Score=33.68 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=61.8
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC--eeEEEEcc--CCCEEEEee---------CCCcEEEeeCCCCCceEE
Q 045566 11 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP--IKEVAWIP--EMNLLATGS---------WDKTLKYWDTRQPNPVHT 77 (112)
Q Consensus 11 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~~~~~~---------~~~~i~~w~~~~~~~~~~ 77 (112)
..++.++.++.|.-+|.++++.+......... -..+.-+| .+..++.++ .++.+...|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57777888999999999999887665432210 00111122 123344443 357788889988887765
Q ss_pred ecCCC------------------------eEEEEeeCCCEEEEEeCCC------------------cEEEEECcCCC
Q 045566 78 QQLPD------------------------RCYALTVRYPLMVVGTADR------------------NLVVFNLQNPQ 112 (112)
Q Consensus 78 ~~~~~------------------------~~~~~~~~~~~~~~~~~d~------------------~v~~~d~~~~~ 112 (112)
..... ....+++.+..++.++.++ .+.-+|.++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 53310 1233444556777777665 68888887764
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.53 E-value=0.064 Score=31.27 Aligned_cols=108 Identities=8% Similarity=0.090 Sum_probs=67.6
Q ss_pred CeeEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC-c---
Q 045566 1 VLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-P--- 74 (112)
Q Consensus 1 v~~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~-~--- 74 (112)
++.++|+|+.. ++++....+.|..++. +++.+..++-. -+....+++..++.++++.-.++.+.++++.... .
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 46799999654 6677778888888885 46666665432 3557888888778777766668889888874321 1
Q ss_pred --eEEec--C------CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 75 --VHTQQ--L------PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 75 --~~~~~--~------~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
...+. . ....+++++.+..++++-...-..++.++
T Consensus 103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 11121 1 23689999988877777666556666544
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.48 E-value=0.1 Score=32.92 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=60.2
Q ss_pred EEEcCCCCEEEEE---cCC-CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCc--EEEeeCCCCCceE
Q 045566 4 STWKDDGTTVFSG---GCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKT--LKYWDTRQPNPVH 76 (112)
Q Consensus 4 ~~~~~~~~~l~~~---~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~--i~~w~~~~~~~~~ 76 (112)
-+|+|++..++.- ... ..+.++++.+++...... ....-..-+|+|+|+.++ +...|+. |.+.|+......+
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~ 276 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR 276 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence 3577877765443 222 458888888777655443 223334567999988765 4445555 6666776665333
Q ss_pred E--ecCCCeEEEEeeCCCEEEEEeC-CCcEEEE
Q 045566 77 T--QQLPDRCYALTVRYPLMVVGTA-DRNLVVF 106 (112)
Q Consensus 77 ~--~~~~~~~~~~~~~~~~~~~~~~-d~~v~~~ 106 (112)
. .......-.|+|+|+.++-.+. .|.-.+|
T Consensus 277 Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~ 309 (425)
T COG0823 277 LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY 309 (425)
T ss_pred cccCCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence 1 1222346678899987765544 4443333
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.014 Score=37.24 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~ 68 (112)
...++++|+.+|-|++||- .+... ..+++-..+|..+..+.+|++++..+... +.+.+
T Consensus 440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi~ 498 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLID 498 (644)
T ss_pred CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEEE
Confidence 3457899999999999995 44433 35678889999999999999987766554 44444
No 367
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.0076 Score=40.94 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=53.7
Q ss_pred CcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCCc--EEEE
Q 045566 32 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRN--LVVF 106 (112)
Q Consensus 32 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~--v~~~ 106 (112)
....+..+....+|++|+.+.++++.|...|.|+++++.++........+. +.+--+.+|..+++.+.-.. ..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 344566778899999999999999999999999999998887654443333 22222336666666544333 4566
Q ss_pred ECc
Q 045566 107 NLQ 109 (112)
Q Consensus 107 d~~ 109 (112)
++.
T Consensus 1173 ~~~ 1175 (1516)
T KOG1832|consen 1173 DAS 1175 (1516)
T ss_pred ccc
Confidence 654
No 368
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.30 E-value=0.085 Score=30.15 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=47.0
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCcEE-------Ee-------eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 6 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVT-------VA-------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 6 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
+..+++++.+-..+|.+++||+.+.+.... +. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 445788899999999999999987654321 11 2446678888888887776654 57788887654
Q ss_pred C
Q 045566 72 P 72 (112)
Q Consensus 72 ~ 72 (112)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.27 E-value=0.098 Score=31.89 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=49.1
Q ss_pred EEEcCCCCEEEEEcC--------C--CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCC-EEEEe-eCCCcEEEeeCCC
Q 045566 4 STWKDDGTTVFSGGC--------D--KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATG-SWDKTLKYWDTRQ 71 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~--------~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~~~~~i~~w~~~~ 71 (112)
+++++..+.|++-.. | ..|.++|+.+++.+..++. +.++.++..+.+.+ ++++. ..++.+.+||..+
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 566765554444311 2 2477788888888887763 24577899988544 55544 4678999999999
Q ss_pred CCceEEecC
Q 045566 72 PNPVHTQQL 80 (112)
Q Consensus 72 ~~~~~~~~~ 80 (112)
++.++....
T Consensus 322 Gk~~~~~~~ 330 (342)
T PF06433_consen 322 GKLVRSIEQ 330 (342)
T ss_dssp --EEEEE--
T ss_pred CcEEeehhc
Confidence 988877653
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.24 E-value=0.18 Score=33.25 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=52.6
Q ss_pred eEEEcCCCCEEEEEcCC-CcEEEE-----------EcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEE---e
Q 045566 3 CSTWKDDGTTVFSGGCD-KQVKMW-----------PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY---W 67 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~-~~v~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~---w 67 (112)
.-.|+|+|+.+++.... ..+++. ++..++... .....|..+.|+|||..++... ++.+.+ -
T Consensus 401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 45799998877666432 222222 322222211 2345799999999999877654 456665 2
Q ss_pred eCCCCC-ce---EEecC----CCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 68 DTRQPN-PV---HTQQL----PDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 68 ~~~~~~-~~---~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
....+. .+ ..+.. ....+.|..++.+ +++..++...+|.
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~ 523 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWY 523 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEE
Confidence 222222 11 11111 1245677777764 4555555444553
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.22 E-value=0.021 Score=32.61 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-CCeeEEEEccCCCEEEEe--eCCCcEEEeeCCC
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-APIKEVAWIPEMNLLATG--SWDKTLKYWDTRQ 71 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~--~~~~~i~~w~~~~ 71 (112)
++.+..+++.++.++.|+....+.+...-.|. .++........+..+... +.+..++.|++..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34577888999999999988777665555555 455555555556666666 6777788887754
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.16 Score=31.49 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=74.5
Q ss_pred eEEEcCCCCEEEE-EcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC---CCcEEEeeCCCCCceEEe
Q 045566 3 CSTWKDDGTTVFS-GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 3 ~~~~~~~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~~~~ 78 (112)
.++.++.+..+.. ...+..+.+.|....+.......-. .-..+++++++..+..+.. ++.+.+.|..+.+.+...
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 4567777775544 4456889999977666655544222 4578899998876655544 688888898888777665
Q ss_pred cCC--CeEEEEeeCCCEEEEEe-CCCcEEEEECcC
Q 045566 79 QLP--DRCYALTVRYPLMVVGT-ADRNLVVFNLQN 110 (112)
Q Consensus 79 ~~~--~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~ 110 (112)
... ...+++.|++..+++.. .++.+.+.|...
T Consensus 157 ~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 157 PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 432 26788999999777766 577888888654
No 373
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=96.03 E-value=0.19 Score=32.65 Aligned_cols=71 Identities=18% Similarity=0.096 Sum_probs=41.8
Q ss_pred CCCCEEEEEcCCCcEEEEEcCC----CCCcEE--Eee--------------------ccCCeeEEEEcc----CCCEEEE
Q 045566 8 DDGTTVFSGGCDKQVKMWPLLS----GGQPVT--VAM--------------------HDAPIKEVAWIP----EMNLLAT 57 (112)
Q Consensus 8 ~~~~~l~~~~~~~~v~~~~~~~----~~~~~~--~~~--------------------~~~~v~~~~~~~----~~~~~~~ 57 (112)
++...++.+..||.+....... +..... +.. .......++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3556677777888877776543 111111 000 123345566655 6778999
Q ss_pred eeCCCcEEEeeCCCCCceEEe
Q 045566 58 GSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 58 ~~~~~~i~~w~~~~~~~~~~~ 78 (112)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885543
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.01 E-value=0.25 Score=32.83 Aligned_cols=92 Identities=15% Similarity=0.274 Sum_probs=57.3
Q ss_pred EEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEcc--CCCEEEEeeCCCcEEEeeCC-----CC----CceEEe---
Q 045566 14 FSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTR-----QP----NPVHTQ--- 78 (112)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~w~~~-----~~----~~~~~~--- 78 (112)
++-+....+.|||.+.+.....-. ...+.|..+.|.. +++.+++.+..+.|.++... +. .++..+
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 333445679999987666332221 3467899999964 88999999999999998542 11 122222
Q ss_pred --c-CCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 79 --Q-LPDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 79 --~-~~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
. .++....|..+|..++.+ +..+.++|
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred cCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 1 244566777777544433 34566665
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.93 E-value=0.18 Score=30.42 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=56.4
Q ss_pred EEEEEcCCCcEEEEEcCCCCCcEEEeecc--CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC-CceEEe---cCC--Ce
Q 045566 12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NPVHTQ---QLP--DR 83 (112)
Q Consensus 12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~-~~~~~~---~~~--~~ 83 (112)
.++.+. ++.+.+|++...+.+....... ..+.++.. .+.+++.|+....+.++..+.. ..+... ..+ ..
T Consensus 100 ~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~ 176 (321)
T PF03178_consen 100 RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVT 176 (321)
T ss_dssp EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEE
T ss_pred EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEE
Confidence 344444 3789999988777333332222 34555544 4668899988888887755432 212222 122 24
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 84 CYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
+..+-++++.++.+..+|.+.++...
T Consensus 177 ~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 45555466789999999999988764
No 376
>PHA02713 hypothetical protein; Provisional
Probab=95.92 E-value=0.11 Score=33.96 Aligned_cols=61 Identities=7% Similarity=0.000 Sum_probs=35.8
Q ss_pred CCCEEEEeeCC------CcEEEeeCCC-CCceEEecCCC---eEEEEeeCCCEEEEEeCCC--cEEEEECcCC
Q 045566 51 EMNLLATGSWD------KTLKYWDTRQ-PNPVHTQQLPD---RCYALTVRYPLMVVGTADR--NLVVFNLQNP 111 (112)
Q Consensus 51 ~~~~~~~~~~~------~~i~~w~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~ 111 (112)
++...+.|+.+ ..+..||+.+ .+.......+. ..-....++.+.++|+.++ .+..||..+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 46666667653 2467889887 55432222221 1122234677888888887 6777777664
No 377
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.26 Score=32.05 Aligned_cols=26 Identities=15% Similarity=-0.062 Sum_probs=19.4
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEc
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPL 27 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~ 27 (112)
..+..++.|..++-.+.+|.+-++-.
T Consensus 107 ~~vl~s~~GS~VaL~G~~Gi~vMeLp 132 (741)
T KOG4460|consen 107 YQVLLSPTGSHVALIGIKGLMVMELP 132 (741)
T ss_pred EEEEecCCCceEEEecCCeeEEEEch
Confidence 45667889998888888887766543
No 378
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.72 E-value=0.051 Score=22.63 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.3
Q ss_pred CeeEEEcCCC---CEEEEEcCCCcEEEEEcCC
Q 045566 1 VLCSTWKDDG---TTVFSGGCDKQVKMWPLLS 29 (112)
Q Consensus 1 v~~~~~~~~~---~~l~~~~~~~~v~~~~~~~ 29 (112)
|.++.|+|+. .+|+.+=..+.|.++|+++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999844 4777777778999999884
No 379
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.69 E-value=0.34 Score=31.90 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=60.5
Q ss_pred CeeEEEcCC----CCEEEEEcCCCcEEEEEcCC-----CCCcEEEeec---cCC--eeEEEEccCCCEEEEeeCCCcEEE
Q 045566 1 VLCSTWKDD----GTTVFSGGCDKQVKMWPLLS-----GGQPVTVAMH---DAP--IKEVAWIPEMNLLATGSWDKTLKY 66 (112)
Q Consensus 1 v~~~~~~~~----~~~l~~~~~~~~v~~~~~~~-----~~~~~~~~~~---~~~--v~~~~~~~~~~~~~~~~~~~~i~~ 66 (112)
|..++|.|- ...+........|.+|-+.. ++.+.....+ .-+ -....|+|....++.-.....-.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 457889984 33455555668899998752 2222111111 111 134569998777665555444445
Q ss_pred eeCCCCCce--EEec--CCCeEEEEeeCCCEEEEEeCCC-cEEEEEC
Q 045566 67 WDTRQPNPV--HTQQ--LPDRCYALTVRYPLMVVGTADR-NLVVFNL 108 (112)
Q Consensus 67 w~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~d~-~v~~~d~ 108 (112)
++++..... ..++ +.+.+.+|..+|+.++++-... .-++||-
T Consensus 139 ~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 139 PSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 555433222 2222 2346788999999887764442 4568874
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.26 Score=31.97 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=55.9
Q ss_pred EEEcCCCcEEEEEcCCCCC--cEEEeec----cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC---CCceEEecCCCeE
Q 045566 14 FSGGCDKQVKMWPLLSGGQ--PVTVAMH----DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ---PNPVHTQQLPDRC 84 (112)
Q Consensus 14 ~~~~~~~~v~~~~~~~~~~--~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~---~~~~~~~~~~~~~ 84 (112)
+.|-.+..|.-||++-... +.--..| .....|.+-..+| +++.|+.+|.|++||.-. ...+..+..++..
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH 476 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence 4455677888899874333 1111111 2345555555455 788999999999998622 2233444556677
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEE
Q 045566 85 YALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 85 ~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
+....+|.+++..+.. .+.+-+
T Consensus 477 VdvtadGKwil~Tc~t-yLlLi~ 498 (644)
T KOG2395|consen 477 VDVTADGKWILATCKT-YLLLID 498 (644)
T ss_pred EEeeccCcEEEEeccc-EEEEEE
Confidence 7788889887766543 444433
No 381
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.65 E-value=0.054 Score=30.93 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=16.7
Q ss_pred EccCCCEEEEeeCCCcEEEeeCCCCCc
Q 045566 48 WIPEMNLLATGSWDKTLKYWDTRQPNP 74 (112)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~~w~~~~~~~ 74 (112)
+...+.++++.+.+|.+++||+.+.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence 344566666666677777777665544
No 382
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.25 Score=28.31 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCCEEEEEcC--CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEE-EEeeCCCcEEEeeCCCCCceEEecCCCeEE
Q 045566 9 DGTTVFSGGC--DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLL-ATGSWDKTLKYWDTRQPNPVHTQQLPDRCY 85 (112)
Q Consensus 9 ~~~~l~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~ 85 (112)
+|.++.+.+. ...|++||+.+++.+....-....+..--...-+..+ ...-.++.-..+|.++.+.+..+..+....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 3445555443 3468899988777655432111111111111113333 333457778888888888887777777777
Q ss_pred EEeeCCCEEEEEeCCCcEEEEECc
Q 045566 86 ALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 86 ~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
.+..++..++++.....+++-|.+
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHH
Confidence 777777778877777677666544
No 383
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.56 Score=32.21 Aligned_cols=94 Identities=12% Similarity=0.180 Sum_probs=59.4
Q ss_pred CeeEEEcCCCCE-EEEEcCCCcEEEEEcCCCCCc-EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 1 VLCSTWKDDGTT-VFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 1 v~~~~~~~~~~~-l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
|+.+++..++.. ++++. -..|.+|.+....+. ..+..+...+.|..+++....++.+ .+..+.+|+....++...+
T Consensus 174 ITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred ceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeee
Confidence 567788877776 34333 357999998744433 3466788889999998855444433 4567999998877777777
Q ss_pred cCCC-eEEEEeeCCCEEEE
Q 045566 79 QLPD-RCYALTVRYPLMVV 96 (112)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~ 96 (112)
.... ..+.|...|..+++
T Consensus 252 ~~g~kk~~~~~~~g~~L~v 270 (933)
T KOG2114|consen 252 EVGEKKEMLVFSFGLLLCV 270 (933)
T ss_pred cCCCeEEEEEEecCEEEEE
Confidence 6333 33333333444433
No 384
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.15 E-value=0.33 Score=28.43 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=53.4
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCC---CCCcEEE--------eeccCCeeEEEEcc-CCCEEEEeeCCCcEEEeeC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS---GGQPVTV--------AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDT 69 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~---~~~~~~~--------~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~ 69 (112)
-.++|+|.++.|+.+.+..-..+|.+.. ....... ......+..+.++| .+.+++.+..++.+...|
T Consensus 121 EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d- 199 (248)
T PF06977_consen 121 EGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD- 199 (248)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--
T ss_pred EEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-
Confidence 3689999877777777766666776653 1111111 11234578899999 566777777888899888
Q ss_pred CCCCceEEec--C----------CCeEEEEeeCCCEEEEE
Q 045566 70 RQPNPVHTQQ--L----------PDRCYALTVRYPLMVVG 97 (112)
Q Consensus 70 ~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~ 97 (112)
.+++.+..+. . ....++|.++|++.++.
T Consensus 200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 200 RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 4555544332 2 23578999988655554
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.12 E-value=0.34 Score=28.35 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=59.5
Q ss_pred eeEEEcCCCCEE-EEEcCCCcEEEEE--cCCCCC-----cEEEee---ccC-CeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566 2 LCSTWKDDGTTV-FSGGCDKQVKMWP--LLSGGQ-----PVTVAM---HDA-PIKEVAWIPEMNLLATGSWDKTLKYWDT 69 (112)
Q Consensus 2 ~~~~~~~~~~~l-~~~~~~~~v~~~~--~~~~~~-----~~~~~~---~~~-~v~~~~~~~~~~~~~~~~~~~~i~~w~~ 69 (112)
+.++|+.+.+.+ ++-+.+..|.-|| ..++.. +..++. .+. .--.++...+|.++++.-..+.|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 357788777665 4456777887777 444432 222211 111 1123444667888888888899999999
Q ss_pred CCCCceEEecCCC---eEEEEe-eCCCEEEEE
Q 045566 70 RQPNPVHTQQLPD---RCYALT-VRYPLMVVG 97 (112)
Q Consensus 70 ~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~ 97 (112)
.+++.+..+..+. ++.+|. ++-..+++.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 9999988887654 556664 333444443
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=0.4 Score=28.87 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=40.7
Q ss_pred EEcCCCCEEEEEcC-----CCcEEEEEcCCC-CCcEEEeeccCCeeEEEEccCCCEEEEee
Q 045566 5 TWKDDGTTVFSGGC-----DKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLATGS 59 (112)
Q Consensus 5 ~~~~~~~~l~~~~~-----~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 59 (112)
.|||+|++|...-+ -|.|-+||.+.+ +.+.+++.|.-.-+.+.+.+||+.++...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 58899998876532 367889998743 23456777777778899999999887664
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.92 E-value=0.54 Score=29.73 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=49.1
Q ss_pred eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC-CCeEEEEee----C---------------CC--EEE
Q 045566 38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-PDRCYALTV----R---------------YP--LMV 95 (112)
Q Consensus 38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-~~~~~~~~~----~---------------~~--~~~ 95 (112)
.....+.++..+|.+.+.++.+.=|.|.++|+.+...++..+. ....+.|-. . .. +++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3445678999999999888888889999999988776544432 111111110 0 01 233
Q ss_pred EEeCCCcEEEEECcCCC
Q 045566 96 VGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 96 ~~~~d~~v~~~d~~~~~ 112 (112)
-...-|.|.+|.++++.
T Consensus 385 yaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGP 401 (415)
T ss_pred EeccCCeEEEEecCCCC
Confidence 35667889999998863
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.88 E-value=0.46 Score=28.71 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=37.9
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEEee
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~ 68 (112)
..+.-+++|+++++++.-....-|+.-.. .-... ......+..+.|.|++.+.+.+ ..+.+++=+
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 34566789999988877666667764221 11222 2345789999999998876655 778888766
No 389
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.85 E-value=0.56 Score=29.57 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=30.5
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 40 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 40 ~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
.+++..++++|++++++.-..+|.+.+.+..-.+.+..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 357999999999999999999999988865544444444
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.70 E-value=0.27 Score=30.62 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=36.2
Q ss_pred EEcCCCCEEEE-EcCCCc--EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecC
Q 045566 5 TWKDDGTTVFS-GGCDKQ--VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 5 ~~~~~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
+|.++|++|+. +..++. +.+.|+.+++..+.-.+.........++|+.+.++-...++.+.-.|+.+.+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 67888876544 444554 55566665554433232222222455667777765555566778788888765444433
No 391
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.59 E-value=0.2 Score=32.52 Aligned_cols=61 Identities=7% Similarity=0.071 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
...+++.+++.|-+++||--.......+++-...|..+....+|.++++.|.. ++.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 45689999999999999943333333567778889999999999988777654 56666654
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.22 E-value=1 Score=29.82 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=54.3
Q ss_pred CCEEEEEcCCC------cEEEEEcCCCCCc--EEEeeccCCeeEEEEccCCCEEEEeeCC------CcEEEeeCCCCCce
Q 045566 10 GTTVFSGGCDK------QVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWD------KTLKYWDTRQPNPV 75 (112)
Q Consensus 10 ~~~l~~~~~~~------~v~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~w~~~~~~~~ 75 (112)
+..++.|+.++ .+..||..++.-. ..++ ....-.+++.. ++...++|+.+ ..+..||.++.+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 44667777663 4677887655321 1222 12222333333 45677888887 34667888877644
Q ss_pred EEecCCCe--EEEE-eeCCCEEEEEeCCCc-----EEEEECcC
Q 045566 76 HTQQLPDR--CYAL-TVRYPLMVVGTADRN-----LVVFNLQN 110 (112)
Q Consensus 76 ~~~~~~~~--~~~~-~~~~~~~~~~~~d~~-----v~~~d~~~ 110 (112)
........ .... .-+|...++|+.||. +..||.++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 32222221 1222 346778888888864 55566554
No 393
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.15 E-value=0.72 Score=27.84 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=46.3
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC-C-------eEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 43 IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-D-------RCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 43 v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
++++...++|.++++.-.-..|.+.+.++++.+..+..+ . ..+++..+-+++-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 567777778899999988889999999998888777554 1 22444444444444456777777764
No 394
>PRK10115 protease 2; Provisional
Probab=94.08 E-value=1.2 Score=30.17 Aligned_cols=105 Identities=9% Similarity=-0.038 Sum_probs=57.3
Q ss_pred eeEEEcCCCCEEEEEc-----CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-C-----CcEEEeeCC
Q 045566 2 LCSTWKDDGTTVFSGG-----CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-D-----KTLKYWDTR 70 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-----~~i~~w~~~ 70 (112)
..+.|+|++++|+.+. +...+++.|+.+++.+....... . ..+.|.+++..++-... + ..+..+++.
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 3578899999887753 23457888887776432221111 1 45899998876554432 2 356677777
Q ss_pred CCC--ceEEecCC---CeEEEE-eeCCCEEEEEeC---CCcEEEEEC
Q 045566 71 QPN--PVHTQQLP---DRCYAL-TVRYPLMVVGTA---DRNLVVFNL 108 (112)
Q Consensus 71 ~~~--~~~~~~~~---~~~~~~-~~~~~~~~~~~~---d~~v~~~d~ 108 (112)
+.. ....+... .....+ ..++.+++..+. ++.+.+++.
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 662 22222221 111122 225665544333 346777774
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.97 E-value=1.4 Score=30.38 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC--------eeEEEEc----------------cCCCEEEEeeCCCcEE
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP--------IKEVAWI----------------PEMNLLATGSWDKTLK 65 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~~~~~~~~~~i~ 65 (112)
+..++.++.++.|.-.|..+++.+..+...... ...+.+- ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556778888889999998888877665422110 1112221 1234677788899999
Q ss_pred EeeCCCCCceEEecCCCeE---------------EEEee--CCCEEEEEeC----------CCcEEEEECcCCC
Q 045566 66 YWDTRQPNPVHTQQLPDRC---------------YALTV--RYPLMVVGTA----------DRNLVVFNLQNPQ 112 (112)
Q Consensus 66 ~w~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~~----------d~~v~~~d~~~~~ 112 (112)
-.|.++++.+..+..+... ..-.| .+..+++++. +|.|+-+|.++|+
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 8899988887654321100 01111 2345666643 5789999999885
No 396
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.85 E-value=0.23 Score=32.30 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEE
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVT 35 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~ 35 (112)
+..++++-+.|+.+++||+.+++.+..
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 667899999999999999998888443
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.82 E-value=1.1 Score=28.70 Aligned_cols=93 Identities=10% Similarity=0.178 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCCcEEEeecc--CCeeEEEEc--cCCCE-EEEeeCCCcEEEeeC-CCCC----ceEEe----------
Q 045566 19 DKQVKMWPLLSGGQPVTVAMHD--APIKEVAWI--PEMNL-LATGSWDKTLKYWDT-RQPN----PVHTQ---------- 78 (112)
Q Consensus 19 ~~~v~~~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~~~-~~~~~~~~~i~~w~~-~~~~----~~~~~---------- 78 (112)
..++.+||..+.+..+++.--. .....+.|. |+..+ ++.+.....|..|-. ..++ .+-.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 3679999999999888875322 234566665 33333 444444555555533 2221 11111
Q ss_pred ----------cCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcCC
Q 045566 79 ----------QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQNP 111 (112)
Q Consensus 79 ----------~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~~ 111 (112)
..-++.+.++.+.++|+.++. +|.++.||+..+
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 112356778889999888776 889999999875
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=0.31 Score=34.54 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=44.3
Q ss_pred eEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 3 CSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 3 ~~~~~~~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
++.|+|.=. -.+++..|+.|++..+........--......++++|+|.|++++.|...|.+.-|...
T Consensus 160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred cccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 455555322 23455666667666554333322222245567999999999999999999999888654
No 399
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.79 E-value=1.2 Score=29.16 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEeecc-CCee---E-------EEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-APIK---E-------VAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
+..++.++.++.|.-.|..+++.+.++.... ..+. + +++ .+..++.++.++.+.-.|.++++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889999999888776654211 1111 0 111 2345666778899999999999887665
Q ss_pred cCCCe----EEEEee--CCCEEEEEeC------CCcEEEEECcCCC
Q 045566 79 QLPDR----CYALTV--RYPLMVVGTA------DRNLVVFNLQNPQ 112 (112)
Q Consensus 79 ~~~~~----~~~~~~--~~~~~~~~~~------d~~v~~~d~~~~~ 112 (112)
..... .+.-.| .+..++++.. ++.|..+|.++|+
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 43210 011111 1334555542 6789999988875
No 400
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.68 E-value=0.63 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=15.8
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEc
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPL 27 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~ 27 (112)
.+++||.||+..+..+ ..|.|.+.
T Consensus 8 ~~l~WS~Dg~laV~t~--~~v~IL~~ 31 (173)
T PF12657_consen 8 NALAWSEDGQLAVATG--ESVHILDP 31 (173)
T ss_pred cCeeECCCCCEEEEcC--CeEEEEec
Confidence 4799999996654433 35666643
No 401
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.57 E-value=0.22 Score=19.97 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=20.9
Q ss_pred CCCCEEEEEc-CCCcEEEEEcCCCCCcEEEe
Q 045566 8 DDGTTVFSGG-CDKQVKMWPLLSGGQPVTVA 37 (112)
Q Consensus 8 ~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~ 37 (112)
|++++++++. .++.|.++|..+.+....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677666654 57889999987766655554
No 402
>PHA02713 hypothetical protein; Provisional
Probab=93.34 E-value=1.5 Score=28.91 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCCEEEEeeCCC-----cEEEeeCCCCCceEEecC--CCe-EEEEeeCCCEEEEEeCC
Q 045566 51 EMNLLATGSWDK-----TLKYWDTRQPNPVHTQQL--PDR-CYALTVRYPLMVVGTAD 100 (112)
Q Consensus 51 ~~~~~~~~~~~~-----~i~~w~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~d 100 (112)
++...+.|+.++ .+..||+.+.+....-.. +.. ......++...+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCC
Confidence 567777777653 377889876643321111 111 11223466677777654
No 403
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.25 E-value=1.5 Score=28.71 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC
Q 045566 20 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 81 (112)
Q Consensus 20 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 81 (112)
+.+.-+|+.+++.....+......... ..-.+..++.+..+|.++.+|.++++.+......
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 345556666665554433211111111 1113456677788999999999999988777554
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.08 E-value=0.13 Score=35.48 Aligned_cols=61 Identities=8% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCee----------E-EEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK----------E-VAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~----------~-~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
+.-++..+-.++.+++....+... ..+.+|...++ . -..+|||..++..+.||.+.+|.+.
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 444555566677777665443221 11122322211 1 2278999999999999999998753
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=0.56 Score=33.41 Aligned_cols=55 Identities=13% Similarity=0.281 Sum_probs=38.4
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE---ee-ccCCeeEEEEccCCCEEE
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AM-HDAPIKEVAWIPEMNLLA 56 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~ 56 (112)
++|++|+|.|++++.|-.+|.+.-|... .+....+ +. ....|.++.|.....+++
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 3689999999999999999999887643 2211122 11 236788999987555544
No 406
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.99 E-value=0.29 Score=30.02 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=37.5
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE-EEee---------------c-cCCeeEEEEccCCCEEEEeeC-CCc
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAM---------------H-DAPIKEVAWIPEMNLLATGSW-DKT 63 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~---------------~-~~~v~~~~~~~~~~~~~~~~~-~~~ 63 (112)
....|+|+|+.++.... +.|.+.+..+++..+ +..+ . -+.-..+-|+|++++++.... +..
T Consensus 46 ~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~ 124 (353)
T PF00930_consen 46 QDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDERE 124 (353)
T ss_dssp SEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TT
T ss_pred ccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcC
Confidence 35789999999988764 678888876553322 1111 0 122357889999998876543 333
Q ss_pred EEEe
Q 045566 64 LKYW 67 (112)
Q Consensus 64 i~~w 67 (112)
+..+
T Consensus 125 v~~~ 128 (353)
T PF00930_consen 125 VPEY 128 (353)
T ss_dssp S-EE
T ss_pred CceE
Confidence 4433
No 407
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=92.91 E-value=0.25 Score=18.69 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=13.7
Q ss_pred EEEEEeCCCcEEEEECcCCC
Q 045566 93 LMVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 93 ~~~~~~~d~~v~~~d~~~~~ 112 (112)
.++.++.++.+..+|.++++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEEEEcCCCEEEEEEcccCc
Confidence 56666677777777776654
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.73 E-value=1.2 Score=26.19 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=38.4
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEcc
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP 50 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 50 (112)
++...+|.+.+++-..++|...|+.+++.+.++.-....+++.+|--
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 34555777777777788999999999999998887788899999953
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.67 E-value=2 Score=28.61 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=40.3
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEe-eccCCeeEEEEccCCCEEEEee-CCCcEEEeeCC
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTR 70 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~w~~~ 70 (112)
+-|+|....|++-.....--++++.......... ...+.|+|.+|..||+.++.+- ..-.-++||-.
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4588877777654433333345544333222221 3567899999999998776554 44557788853
No 410
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.46 E-value=1.5 Score=26.54 Aligned_cols=97 Identities=11% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCEEEEEcC---------C-CcEEEEEcCCC----CCcEEE--eeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCC
Q 045566 10 GTTVFSGGC---------D-KQVKMWPLLSG----GQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 73 (112)
Q Consensus 10 ~~~l~~~~~---------~-~~v~~~~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 73 (112)
.+++++|.. . |.+.++++... ..+..+ ....++|++++-- ++. ++.+ .++.+.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc
Confidence 467777643 2 88999998874 122222 2356788888765 444 3333 34789999987776
Q ss_pred -ceE--EecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 74 -PVH--TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 74 -~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
... .+..+.....+...++++++|..-..+.++..+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 332 233445566667778899999988888877443
No 411
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=92.18 E-value=0.39 Score=19.14 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=13.0
Q ss_pred EEEEeCCCcEEEEECcCCC
Q 045566 94 MVVGTADRNLVVFNLQNPQ 112 (112)
Q Consensus 94 ~~~~~~d~~v~~~d~~~~~ 112 (112)
++.++.+|.+.-.|.++|+
T Consensus 3 v~~~~~~g~l~AlD~~TG~ 21 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGK 21 (38)
T ss_dssp EEEETTTSEEEEEETTTTS
T ss_pred EEEeCCCCEEEEEECCCCC
Confidence 4555777777777777764
No 412
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.18 E-value=0.74 Score=31.68 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=42.7
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC--CceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEE
Q 045566 39 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVF 106 (112)
Q Consensus 39 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~ 106 (112)
....++++.-+|.++.++.+..||.+.+++.-.. ..+.....+...+.|...| +++...|+++.-|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAW 80 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhhee
Confidence 3455678888899999999999999999886433 2344333333334444333 5555666666555
No 413
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.03 E-value=1.5 Score=25.69 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=57.7
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEE--------------EeeccCCeeEEE--EccCCCEEEEeeCCCcEE
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT--------------VAMHDAPIKEVA--WIPEMNLLATGSWDKTLK 65 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~v~~~~--~~~~~~~~~~~~~~~~i~ 65 (112)
..+..-|+-+.+++-+ |+.+.++++........ .......+...+ -...+...+.....+.+.
T Consensus 39 ~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~ 117 (275)
T PF00780_consen 39 TQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKIL 117 (275)
T ss_pred EEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEE
Confidence 4556666666665554 48999999865443321 111223344444 112344444444555888
Q ss_pred EeeCCCC-----CceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 66 YWDTRQP-----NPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 66 ~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+|..... +....+..+.....+...++.++.+..+ ...+.|+.++
T Consensus 118 i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~-~f~~idl~~~ 167 (275)
T PF00780_consen 118 IYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK-GFYLIDLNTG 167 (275)
T ss_pred EEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC-ceEEEecCCC
Confidence 8766542 3445555554444444446667777644 4666677654
No 414
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.97 E-value=2.1 Score=27.08 Aligned_cols=87 Identities=5% Similarity=-0.009 Sum_probs=45.8
Q ss_pred EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEc-----cCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC----
Q 045566 12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-----PEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---- 82 (112)
Q Consensus 12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---- 82 (112)
+++.++ ...++++...+.+..............+.+- ..+..+++-..+|.++++.+...+.+.....+.
T Consensus 228 ~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~ 306 (395)
T PF08596_consen 228 YVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS 306 (395)
T ss_dssp EEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred EEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence 344444 5689999887666544333121122233332 246677888899999999999888776665422
Q ss_pred ---eEEEEeeCCCEEEEEeC
Q 045566 83 ---RCYALTVRYPLMVVGTA 99 (112)
Q Consensus 83 ---~~~~~~~~~~~~~~~~~ 99 (112)
....+.++|+.++..+.
T Consensus 307 ~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SS
T ss_pred ccccccEECCCCCEEEEeCc
Confidence 34566788887666544
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=2.4 Score=27.54 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=53.2
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCc----EEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC----C
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP----VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ----P 72 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~----~ 72 (112)
|.++.|++|.+.+|+--.+..|.+++....+.. .+++.....|....|..+.. ++.-...| +.+|.+.. -
T Consensus 69 I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pekrsl 146 (657)
T KOG2377|consen 69 IKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEKRSL 146 (657)
T ss_pred eeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhhhhh
Confidence 568999999999999999999999987433322 23344455678888876533 33332222 44443322 1
Q ss_pred CceEEecCCCeEEEEeeCCCEE
Q 045566 73 NPVHTQQLPDRCYALTVRYPLM 94 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~ 94 (112)
+.+..+...+.=..+.++.+.+
T Consensus 147 RlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 147 RLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhcccCccEEEEccccceE
Confidence 2233344444444555554433
No 416
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=91.65 E-value=0.87 Score=22.11 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=28.1
Q ss_pred cEEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeC-CCcEEEEECcC
Q 045566 63 TLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN 110 (112)
Q Consensus 63 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~~~d~~~ 110 (112)
.+..||..+.+....--.....+.++|+++.+++++. .+.|++++.+.
T Consensus 37 ~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 37 NVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred eEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3444554332222222233457788888887777655 56788887654
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.49 E-value=2.9 Score=27.83 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCc-----EEEEEcCCCCCcEEEeeccCCeeEEEEcc-CCCEEEEeeCCC------cEEEeeCCCCCceE
Q 045566 9 DGTTVFSGGCDKQ-----VKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDK------TLKYWDTRQPNPVH 76 (112)
Q Consensus 9 ~~~~l~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~------~i~~w~~~~~~~~~ 76 (112)
+|...++|+.||. +..||..+.+-...-+ ............ ++...+.|+.++ .+..||..+.+...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 4666788887754 5566665443211111 111222222222 677777777543 45678887766443
Q ss_pred EecCCCe--EE-EEeeCCCEEEEEeCCCc-----EEEEECcCC
Q 045566 77 TQQLPDR--CY-ALTVRYPLMVVGTADRN-----LVVFNLQNP 111 (112)
Q Consensus 77 ~~~~~~~--~~-~~~~~~~~~~~~~~d~~-----v~~~d~~~~ 111 (112)
....... .. ...-++.+.+.|+.|+. |..||.++.
T Consensus 459 ~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred cCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC
Confidence 3322221 11 22346667777777753 566776653
No 418
>PHA03098 kelch-like protein; Provisional
Probab=91.39 E-value=2.8 Score=27.39 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCCEEEEeeCCC--------cEEEeeCCCCCceEEecC--C-CeEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566 51 EMNLLATGSWDK--------TLKYWDTRQPNPVHTQQL--P-DRCYALTVRYPLMVVGTAD-----RNLVVFNLQNP 111 (112)
Q Consensus 51 ~~~~~~~~~~~~--------~i~~w~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~ 111 (112)
++..++.|+.+. .+..||..+.+....-.. + ........++..++.|+.+ ..+..||..+.
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 455666665432 277888876653321111 1 1111222356666666654 46788887654
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.33 E-value=1.9 Score=25.35 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=60.1
Q ss_pred eeEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEee-CCCCCce-EEe
Q 045566 2 LCSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD-TRQPNPV-HTQ 78 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~-~~~~~~~-~~~ 78 (112)
.+.+++++++.++... .++.-.+|-........... ....+..-.|++++........+....++. ..++... ...
T Consensus 27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v 105 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV 105 (253)
T ss_pred cceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence 4678899998776554 23333444444444433332 233667778999887777766666666663 2222211 111
Q ss_pred ---c--CCCeEEEEeeCCCEEEEEe---CCCcEEE
Q 045566 79 ---Q--LPDRCYALTVRYPLMVVGT---ADRNLVV 105 (112)
Q Consensus 79 ---~--~~~~~~~~~~~~~~~~~~~---~d~~v~~ 105 (112)
. ..+..+.++|+|..++... .++.|.+
T Consensus 106 ~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 106 DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred cccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence 1 1567899999998776655 2455554
No 420
>PHA03098 kelch-like protein; Provisional
Probab=91.33 E-value=2.8 Score=27.35 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=31.3
Q ss_pred CCCEEEEeeCC------CcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCCC--------cEEEEECcCC
Q 045566 51 EMNLLATGSWD------KTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADR--------NLVVFNLQNP 111 (112)
Q Consensus 51 ~~~~~~~~~~~------~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~--------~v~~~d~~~~ 111 (112)
++..++.|+.+ ..+..||+.+.+.......+. ...+...++..++.|+.+. .+..||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56666666632 357788887654322111111 1122234555666665431 2777887654
No 421
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=91.32 E-value=0.41 Score=17.69 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=14.7
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEE
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMW 25 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~ 25 (112)
.++.+++|+.+++=+.++.|+++
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 56666777776666666666553
No 422
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=2.3 Score=25.98 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEEeec-c-CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCc-eE--EecCCC-e
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-D-APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VH--TQQLPD-R 83 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~-~~--~~~~~~-~ 83 (112)
+++...+..+.-+++.|+.++.....+..- . +.-.++.. .|++...+..+.-+.+.|+.+.+. .. ....+. .
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d 173 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGD 173 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCC
Confidence 456666777778999999888766544211 1 22233333 577777777666677788876542 21 121111 1
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 84 CYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 84 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.....-.|++.+.+..|+.+.+-|+.++
T Consensus 174 ~~~v~ISGn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 174 THDVAISGNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred ceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence 2234456888888889999999998765
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.11 E-value=3.1 Score=27.49 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCEEEEeeCCCcEEEeeCCC---CCceEEecCCCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 51 EMNLLATGSWDKTLKYWDTRQ---PNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 51 ~~~~~~~~~~~~~i~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
..-+++.++..|.|++||.-. ...+..+...+..+....+|.++++.+.. .+.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 345889999999999998633 22334444455666677788887776644 34444443
No 424
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.10 E-value=2.3 Score=25.92 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=56.7
Q ss_pred eEEEcCCCCEEEEEcC---------CCcEEEEEcC-CCCCcEEEeeccCCeeEEEEccCCCEEEEeeC-CCcEEEeeCCC
Q 045566 3 CSTWKDDGTTVFSGGC---------DKQVKMWPLL-SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQ 71 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~---------~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~w~~~~ 71 (112)
.....|+|.+.+.... ...-.+|-+. .+.....+..+-..-+.++|+|+++.+..... .+.|.-+++..
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 3456677776665443 1111333333 23333333333445578999999987766654 57777776652
Q ss_pred --C---Cc--eEEec---CCCeEEEEeeCCCEEEEEeCCC-cEEEEECc
Q 045566 72 --P---NP--VHTQQ---LPDRCYALTVRYPLMVVGTADR-NLVVFNLQ 109 (112)
Q Consensus 72 --~---~~--~~~~~---~~~~~~~~~~~~~~~~~~~~d~-~v~~~d~~ 109 (112)
. .. ...+. ...-.++.+-+|.+.+++..+| .|..|+..
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 1 11 11111 1123566666776664444443 77777755
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.06 E-value=1.5 Score=29.97 Aligned_cols=32 Identities=6% Similarity=0.201 Sum_probs=25.5
Q ss_pred CeeEEEcCC---CCEEEEEcCCCcEEEEEcCCCCC
Q 045566 1 VLCSTWKDD---GTTVFSGGCDKQVKMWPLLSGGQ 32 (112)
Q Consensus 1 v~~~~~~~~---~~~l~~~~~~~~v~~~~~~~~~~ 32 (112)
|..+.|+|. +..|++=..|+.+++||+.....
T Consensus 149 i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 149 IKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 357899995 57888888899999999976543
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=3.1 Score=27.10 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 9 DGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
|.+....+-..|.+.-|..+.... +......+++|.++.|++|.+.++.--.+..|.+++...
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence 333333344445666666554332 222334567999999999999999999999999998843
No 427
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.73 E-value=1.5 Score=23.25 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=59.5
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC--------CcEEEeeccCCeeEEEEcc-----CCCEEEEeeCCCcEEEee
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG--------QPVTVAMHDAPIKEVAWIP-----EMNLLATGSWDKTLKYWD 68 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~i~~w~ 68 (112)
..-.|......|+.++.-+.|.+++..... .+..+ .-...|++++-.+ +...++.| ....+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG-t~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEE
Confidence 445677777889999999999999875332 22222 2445677776544 23445555 456788899
Q ss_pred CCCCCceEEe--cCCCeEEEEee---CCCEEEEEeCCCcEEEEE
Q 045566 69 TRQPNPVHTQ--QLPDRCYALTV---RYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 69 ~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~d~~v~~~d 107 (112)
+.+...+... ...+.++.+.. ...-++..+.+..|.-||
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 9876654322 22344444432 122344444455555444
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.67 E-value=2.1 Score=24.67 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=34.3
Q ss_pred CEEEEEcCCCcEEEEEcCCCCC--cEEEeeccCCeeEEEEccCCCEEEEeeC
Q 045566 11 TTVFSGGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSW 60 (112)
Q Consensus 11 ~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 60 (112)
..|+.+.....|.+|++...+. ...+. .-+.|..+.++..|+++++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEe
Confidence 4555555567899999883332 33444 3478899999999999998643
No 429
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=90.57 E-value=0.64 Score=18.62 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=13.8
Q ss_pred CCCEEEEEeCCCcEEEEECcC
Q 045566 90 RYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 90 ~~~~~~~~~~d~~v~~~d~~~ 110 (112)
.+..++.++.|+.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 455777777788888777653
No 430
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.51 E-value=2.6 Score=25.63 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=57.5
Q ss_pred eEEEcCC-CCEEEEEcCCCc-EEEEEcCCCCCcEEEeeccCC--eeEEEEccCCCEEEEeeC-----CCcEEEeeCCCCC
Q 045566 3 CSTWKDD-GTTVFSGGCDKQ-VKMWPLLSGGQPVTVAMHDAP--IKEVAWIPEMNLLATGSW-----DKTLKYWDTRQPN 73 (112)
Q Consensus 3 ~~~~~~~-~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~-----~~~i~~w~~~~~~ 73 (112)
.++++|. .+-++.+-.-|+ ..++|....+.++++...++. .-.=.|+|+|.++...-. .|.|-+||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 4567774 344555555554 567888777776665432221 122358999998876533 4778899987542
Q ss_pred -ceEEe---cCCCeEEEEeeCCCEEEEEe
Q 045566 74 -PVHTQ---QLPDRCYALTVRYPLMVVGT 98 (112)
Q Consensus 74 -~~~~~---~~~~~~~~~~~~~~~~~~~~ 98 (112)
.+-.+ ......+.+.++|+.++.+.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeC
Confidence 22222 22234577788888877663
No 431
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.35 E-value=3.2 Score=26.35 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=32.7
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec-cCCeeEEEEcc
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH-DAPIKEVAWIP 50 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~ 50 (112)
+..++.||+++++|.-..+|.+.+.+..-.+....+... ......+.|.-
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 356889999999998888899888875444444444322 23445666654
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=89.75 E-value=4 Score=26.49 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCceEEecCCC---eEEEEeeCCCEEEEEeCC-----CcEEEEECcCC
Q 045566 51 EMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTAD-----RNLVVFNLQNP 111 (112)
Q Consensus 51 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d-----~~v~~~d~~~~ 111 (112)
++...+.|+ .+..||+++.+....-..+. ..-....++.+.+.|+.+ ..+..||..+.
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 456666663 46788887765432221111 122223466777777754 35778887764
No 433
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.72 E-value=3.6 Score=25.99 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=45.2
Q ss_pred EEcCCCCEEEEE-----cCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCC----------------c
Q 045566 5 TWKDDGTTVFSG-----GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK----------------T 63 (112)
Q Consensus 5 ~~~~~~~~l~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------~ 63 (112)
-|.|+|..+.-- +.+..|.-+++.+++...... ......+-.++++++++.=+.|. .
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 477888765442 223345556666655432211 12333444467888876543332 3
Q ss_pred EEEeeCCCCCce--EEec-----------CCCeEEEEeeCCCEEE-EEeCCCcEEEEECc
Q 045566 64 LKYWDTRQPNPV--HTQQ-----------LPDRCYALTVRYPLMV-VGTADRNLVVFNLQ 109 (112)
Q Consensus 64 i~~w~~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~-~~~~d~~v~~~d~~ 109 (112)
|.++++..+... ..+. .......|+|++++++ ++...|...||-++
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 556677655422 2211 1124678999998654 55567777776443
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.31 E-value=3.5 Score=25.29 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=63.2
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcC------CCCC-cEEEee-----ccCCeeEEEEccCC------------CEEEEe
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLL------SGGQ-PVTVAM-----HDAPIKEVAWIPEM------------NLLATG 58 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~------~~~~-~~~~~~-----~~~~v~~~~~~~~~------------~~~~~~ 58 (112)
.++++|.+.+-++...-+...+||.. ..++ ..+++. .....+.+.|+... ..|+.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 47899988888877778899999986 1222 223331 12355677776422 236778
Q ss_pred eCCCcEEEeeCCCCCc-----eEEecC-----CCeEEEEeeC--CCEEEEEeC-CCcEEEEEC
Q 045566 59 SWDKTLKYWDTRQPNP-----VHTQQL-----PDRCYALTVR--YPLMVVGTA-DRNLVVFNL 108 (112)
Q Consensus 59 ~~~~~i~~w~~~~~~~-----~~~~~~-----~~~~~~~~~~--~~~~~~~~~-d~~v~~~d~ 108 (112)
+++|+|.-|....... ...... -.+.+++... +.+|+.+.. .++|.+||-
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 8999999998533222 111111 1134555433 556666654 577888873
No 435
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=89.08 E-value=3.3 Score=24.63 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=43.1
Q ss_pred CCeeEEEEcc----C---CCEEEEeeCCCcEEEeeCCCCCceEEecCCCeE------EEEeeCCCEEEEEeCCCcEEEE
Q 045566 41 APIKEVAWIP----E---MNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRC------YALTVRYPLMVVGTADRNLVVF 106 (112)
Q Consensus 41 ~~v~~~~~~~----~---~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~v~~~ 106 (112)
..|+|++--. + -..++.|.+++.|.+.|.+.-..+.....+... -.+..-+-.+++++.||.|++.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3567766543 1 247889999999999998877766665544321 1222123357888899998764
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.01 E-value=5.7 Score=27.33 Aligned_cols=100 Identities=10% Similarity=-0.016 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCcEEEEEcCC-------C----CC--------cEEEeeccCCeeEEEEc--cCCCEEEEeeCCCcEEEe
Q 045566 9 DGTTVFSGGCDKQVKMWPLLS-------G----GQ--------PVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYW 67 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~~~~~-------~----~~--------~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~i~~w 67 (112)
+...|+.|..||.|.+|.+++ . +. +.....-......++++ ...+++|.+.....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 345788899999999997521 0 00 01111234567888888 677888888888888887
Q ss_pred eCCC--CCce----EEecCCCeEEEEeeCC---C---EEEEEeCCCcEEEEEC
Q 045566 68 DTRQ--PNPV----HTQQLPDRCYALTVRY---P---LMVVGTADRNLVVFNL 108 (112)
Q Consensus 68 ~~~~--~~~~----~~~~~~~~~~~~~~~~---~---~~~~~~~d~~v~~~d~ 108 (112)
-+.. .+.. ......+..++|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5433 1111 1233455677776532 2 6777888999988876
No 437
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.78 E-value=1.8 Score=21.20 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEe
Q 045566 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG 58 (112)
Q Consensus 19 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 58 (112)
+|.+..||+.+++....+.+ -..-+.++.++++.+++.+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 57788888776665433332 3345789999998876655
No 438
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.76 E-value=4.1 Score=25.30 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=39.9
Q ss_pred EEEEEcCCCcEEEEEcCCCCCcEEEeecc--CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCC
Q 045566 12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD 82 (112)
Q Consensus 12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 82 (112)
.++.+..+|.+.-.|..++..+....... ..+..-.+..+|+ +..++.++.+...|.++++.+.......
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 44555677877777877666443222110 1111111222555 6667778888888887777776665544
No 439
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.74 E-value=4.6 Score=25.88 Aligned_cols=100 Identities=11% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCc---EEE-eeccCCeeEEEEcc----CCCEEEEeeCCCcEEEeeCCCCC--------
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQP---VTV-AMHDAPIKEVAWIP----EMNLLATGSWDKTLKYWDTRQPN-------- 73 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~---~~~-~~~~~~v~~~~~~~----~~~~~~~~~~~~~i~~w~~~~~~-------- 73 (112)
..++++|+..|.+++|+....+.. ..+ ..-..+|..++..+ .....++.-.-+.+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 458999999999999998544311 111 22456777777643 22233334566777777763211
Q ss_pred ----ceEEecCCC--eEEEEee----C-CCEEEEEeCCCcEEEEECc
Q 045566 74 ----PVHTQQLPD--RCYALTV----R-YPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 74 ----~~~~~~~~~--~~~~~~~----~-~~~~~~~~~d~~v~~~d~~ 109 (112)
.+..+..+. ..++.-+ . ..++.+-+.||.+.+++-+
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 112222222 2334333 1 3578888999999999754
No 440
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.46 E-value=4.5 Score=25.44 Aligned_cols=56 Identities=14% Similarity=-0.009 Sum_probs=36.4
Q ss_pred eEEEEccCCCEEEEe-eCC----CcEEEeeCCCCCceEEe-cCC-CeEEEEeeCCCEEEEEeC
Q 045566 44 KEVAWIPEMNLLATG-SWD----KTLKYWDTRQPNPVHTQ-QLP-DRCYALTVRYPLMVVGTA 99 (112)
Q Consensus 44 ~~~~~~~~~~~~~~~-~~~----~~i~~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 99 (112)
....++|++++++-+ +.. ..+++.|+.+++.+... ... ...+.|.+++..++-...
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEEC
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEe
Confidence 356789999988744 222 44999999998765432 222 223888888777655543
No 441
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.69 E-value=4.7 Score=24.78 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=31.5
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcE---EE----eeccCCeeEEEEccC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV---TV----AMHDAPIKEVAWIPE 51 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~----~~~~~~v~~~~~~~~ 51 (112)
..++|.|+|+.+++-- .|.|++++ ..+.... .+ .........++++|+
T Consensus 5 ~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred eEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 4789999998877554 89999998 3333211 22 123456789999994
No 442
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.85 E-value=5.1 Score=24.34 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=30.0
Q ss_pred CeeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeec
Q 045566 1 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH 39 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~ 39 (112)
|+++.-.++|.+|++.-.-..|.+.+..+++.+..+.+.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 456777788999998888788888888887777666544
No 443
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.82 E-value=5.2 Score=24.40 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=44.9
Q ss_pred eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCC----CeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
+-...+.++.|+|+.+.+++......-.++--.+++.+...+.. ...+.+-.++.+.++--.++.+.++-
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 34456899999999998888888777777766667766665432 23444444555555544455555543
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.78 E-value=0.048 Score=34.81 Aligned_cols=105 Identities=17% Similarity=0.303 Sum_probs=62.0
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEE-EeeCCCcEEEeeCCCCCceE-EecC
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNPVH-TQQL 80 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~w~~~~~~~~~-~~~~ 80 (112)
...|.|++.-++.++.+..+..||-. ++...... .+.....++|..++..++ .+-..+.+.+||+.+..... ....
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 34677877768888888888888843 44333332 233445677777766544 45567889999986543211 1111
Q ss_pred --CCeEEEEeeCCCEEEEEeCCCcEEEEECc
Q 045566 81 --PDRCYALTVRYPLMVVGTADRNLVVFNLQ 109 (112)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 109 (112)
...-+.|++....++.+...+.+.+++-.
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEecc
Confidence 11234555656666666666666666543
No 445
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.70 E-value=8.3 Score=26.62 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=46.3
Q ss_pred eEEEc--CCCCEEEEEcCCCcEEEEEcCCCCC---cEEEeeccCCeeEEEEccCC---C---EEEEeeCCCcEEEeeC
Q 045566 3 CSTWK--DDGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEM---N---LLATGSWDKTLKYWDT 69 (112)
Q Consensus 3 ~~~~~--~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~---~---~~~~~~~~~~i~~w~~ 69 (112)
.++++ ...+++|++++...|.+|-...... ...-..+...|.+|.|-++. . .+++++-.|.+.+|++
T Consensus 168 GLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 168 GLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 56777 7788999999999998886543211 11111255678889987732 2 6677788999998877
No 446
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.30 E-value=9 Score=26.64 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=46.0
Q ss_pred eeEEEcC-CCCEEEEEcCCCcEEEEEcCCCC----C-cEEEeecc----------CCeeEEEEccCCCEEEEeeCCCcEE
Q 045566 2 LCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG----Q-PVTVAMHD----------APIKEVAWIPEMNLLATGSWDKTLK 65 (112)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~~~~v~~~~~~~~~----~-~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~i~ 65 (112)
..++|+| +...||+....|...+|++.... . ........ +.-..+.|.++...++.+ ....+.
T Consensus 149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-~r~~l~ 227 (765)
T PF10214_consen 149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-NRSKLM 227 (765)
T ss_pred ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE-cCCceE
Confidence 3689999 66799999999999999992111 1 11111111 223367787776666655 455677
Q ss_pred EeeCCCCCc
Q 045566 66 YWDTRQPNP 74 (112)
Q Consensus 66 ~w~~~~~~~ 74 (112)
++|+++...
T Consensus 228 ~~d~~~~~~ 236 (765)
T PF10214_consen 228 LIDFESNWQ 236 (765)
T ss_pred EEECCCCCc
Confidence 888876644
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.43 E-value=2.3 Score=23.36 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=22.4
Q ss_pred CeeEEEcCCC------CEEEEEcCCCcEEEEEcC
Q 045566 1 VLCSTWKDDG------TTVFSGGCDKQVKMWPLL 28 (112)
Q Consensus 1 v~~~~~~~~~------~~l~~~~~~~~v~~~~~~ 28 (112)
|..++|||.| ..|++...++.|.+|...
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 4578999944 478888999999999855
No 448
>PRK13684 Ycf48-like protein; Provisional
Probab=85.30 E-value=6.7 Score=24.19 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=34.3
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEE-EEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKM-WPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKY 66 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~ 66 (112)
..+.+.|++..++++.. |.+.. ++ ..++.-... ......++.+.+.++++.++.+ ..|.+.+
T Consensus 176 ~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 176 RNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRF 239 (334)
T ss_pred EEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEE
Confidence 45677777766665554 44432 22 111222222 2234577888999988876655 4566653
No 449
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.56 E-value=11 Score=26.21 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=45.1
Q ss_pred cCCeeEEEEcc-CCCEEEEeeCCCcEEEeeCCCCC-----ceEEe---cC----C------CeEEEEeeCCCEEEEEeCC
Q 045566 40 DAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN-----PVHTQ---QL----P------DRCYALTVRYPLMVVGTAD 100 (112)
Q Consensus 40 ~~~v~~~~~~~-~~~~~~~~~~~~~i~~w~~~~~~-----~~~~~---~~----~------~~~~~~~~~~~~~~~~~~d 100 (112)
..+...++|+| +...++..+..|...+|++.... ..... .+ + -..+.|..+...+++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 34677899999 67799999999999999992111 11000 00 0 024556666666666654
Q ss_pred CcEEEEECcCC
Q 045566 101 RNLVVFNLQNP 111 (112)
Q Consensus 101 ~~v~~~d~~~~ 111 (112)
..+.++|+++.
T Consensus 224 ~~l~~~d~~~~ 234 (765)
T PF10214_consen 224 SKLMLIDFESN 234 (765)
T ss_pred CceEEEECCCC
Confidence 35777777654
No 450
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=83.73 E-value=14 Score=26.63 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=59.0
Q ss_pred eEEEcCC-CCEEEEEcC----------CCcEEEEEcCCCCCcEEEeec--cCCeeEEEEccCCCEEEEeeCCCcEEEeeC
Q 045566 3 CSTWKDD-GTTVFSGGC----------DKQVKMWPLLSGGQPVTVAMH--DAPIKEVAWIPEMNLLATGSWDKTLKYWDT 69 (112)
Q Consensus 3 ~~~~~~~-~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~ 69 (112)
+..|..+ +.++++|.. .|.+.++.+...+.+.....+ ++.+.++.. -+|++++ +-+..+++|+.
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLye~ 855 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLYEW 855 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEEEc
Confidence 3446665 566776642 477777777664444433222 233333221 1566654 34567899888
Q ss_pred CCCCceE---EecCCCeEEEEeeCCCEEEEEeCCCcEEEEE
Q 045566 70 RQPNPVH---TQQLPDRCYALTVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 70 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~d 107 (112)
.+.+.++ .+..+...+.+.-.+..+++|..=+++.+..
T Consensus 856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 856 TTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred cccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 7765443 2334556666677788888887766665543
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=83.41 E-value=10 Score=24.74 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=32.6
Q ss_pred CCCEEEEeeCC--CcEEEeeCCCCCceEEecCC--C-eEEEEeeCCCEEEEEeCCC---cEEEEECcCC
Q 045566 51 EMNLLATGSWD--KTLKYWDTRQPNPVHTQQLP--D-RCYALTVRYPLMVVGTADR---NLVVFNLQNP 111 (112)
Q Consensus 51 ~~~~~~~~~~~--~~i~~w~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~ 111 (112)
++...+.|+.+ ..+..||..+.+.......+ . .......++...+.|+.++ .+..||.++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence 56777777753 35777887655432211111 1 1122234666667776543 3667776653
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.99 E-value=9.1 Score=28.22 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=29.4
Q ss_pred eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCC
Q 045566 38 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 71 (112)
Q Consensus 38 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 71 (112)
.+.++|..+.....-..+.+-+..+.+..|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999988888889999999999999865
No 453
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.87 E-value=6.2 Score=27.67 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=25.0
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 31 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~ 31 (112)
+++.-+|.+..++.++.|+.+.+|+.....
T Consensus 18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred eeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 467778999999999999999999875433
No 454
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.76 E-value=8.6 Score=23.48 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=54.4
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCce-EEe---
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HTQ--- 78 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~-~~~--- 78 (112)
.++-+|||..-+++...+.+--.|..+++....-.+....-+.+...|++...++-+.. .|.=.|.++.... ..+
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc
Confidence 34556677776777666666666766666544333444555778888888766654433 4444455443321 111
Q ss_pred --cCCCeEEEEeeCCCEEEEEe
Q 045566 79 --QLPDRCYALTVRYPLMVVGT 98 (112)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~ 98 (112)
........|++.|..-+++.
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q 166 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQ 166 (353)
T ss_pred cCCCcccceeeCCCccEEEeec
Confidence 12335567777777666654
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.52 E-value=9.5 Score=23.82 Aligned_cols=95 Identities=9% Similarity=-0.071 Sum_probs=49.8
Q ss_pred eeEEEcCCCCEEEEEc-----------CCC-cEEEEEcCCC--CC--cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEE
Q 045566 2 LCSTWKDDGTTVFSGG-----------CDK-QVKMWPLLSG--GQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 65 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~-----------~~~-~v~~~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 65 (112)
..++|.++|+.+++.. ..+ .|.+++-..+ +. ...+.......+.+++.+++ .+++ ......+
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~~ 94 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDILF 94 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeEEE
Confidence 4689999999887753 223 6766654332 21 12333333445788888888 5443 3343333
Q ss_pred EeeCCCC-----C--ceE-EecC-------CCeEEEEeeCCCEEEEEe
Q 045566 66 YWDTRQP-----N--PVH-TQQL-------PDRCYALTVRYPLMVVGT 98 (112)
Q Consensus 66 ~w~~~~~-----~--~~~-~~~~-------~~~~~~~~~~~~~~~~~~ 98 (112)
+.|.... + .+. .+.. ....+.+.|++.+.++-+
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4344221 1 111 1211 124577888887655544
No 456
>PRK10115 protease 2; Provisional
Probab=81.95 E-value=14 Score=25.42 Aligned_cols=70 Identities=7% Similarity=0.064 Sum_probs=42.5
Q ss_pred CeeEEEEccCCCEEEEee-----CCCcEEEeeCCCCCceEEe-cCCCeEEEEeeCCCEEEEEeCC------CcEEEEECc
Q 045566 42 PIKEVAWIPEMNLLATGS-----WDKTLKYWDTRQPNPVHTQ-QLPDRCYALTVRYPLMVVGTAD------RNLVVFNLQ 109 (112)
Q Consensus 42 ~v~~~~~~~~~~~~~~~~-----~~~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d------~~v~~~d~~ 109 (112)
.+..+.++|++++++.+. ....+++.|+.++..+... ......+.|.++++.++....+ ..|+.+++.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 356778899999887542 2344778888776533222 1112457888888766554432 346666766
Q ss_pred CC
Q 045566 110 NP 111 (112)
Q Consensus 110 ~~ 111 (112)
++
T Consensus 208 t~ 209 (686)
T PRK10115 208 TP 209 (686)
T ss_pred CC
Confidence 54
No 457
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.11 E-value=13 Score=24.49 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCcEEEE-EcCCCCC-----cEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceE--EecC
Q 045566 9 DGTTVFSGGCDKQVKMW-PLLSGGQ-----PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH--TQQL 80 (112)
Q Consensus 9 ~~~~l~~~~~~~~v~~~-~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~--~~~~ 80 (112)
.|..+.+++.||.|.-| |.+.... ++.++-...++..+.-..+.+-+++-..+|.+.++.....+.+. ....
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence 35567888899988776 4443222 11122122333333222244566667777777776554443321 1222
Q ss_pred CCeEEEEeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 81 PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
......++|++.++++-. .|+++++.+++.
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 359 APQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred CcceeeeCcccchheeec-CCceEEEEecCC
Confidence 445678899988887653 457888876654
No 458
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.87 E-value=18 Score=25.37 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=46.1
Q ss_pred CcEEEEEcCCCCCcEEEeec--c----------------CCeeEEEEccCCCEEEE-eeCCCcEEEeeCCCCCceEEecC
Q 045566 20 KQVKMWPLLSGGQPVTVAMH--D----------------APIKEVAWIPEMNLLAT-GSWDKTLKYWDTRQPNPVHTQQL 80 (112)
Q Consensus 20 ~~v~~~~~~~~~~~~~~~~~--~----------------~~v~~~~~~~~~~~~~~-~~~~~~i~~w~~~~~~~~~~~~~ 80 (112)
|.|.-+|+.+++.....+.. + .+...=...-.+.+++. ++.|+.++-+|.++++.+.....
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l 720 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKARL 720 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEeeC
Confidence 67888888888776544321 0 00000001113455554 78899999999999999887765
Q ss_pred CC----eEEEEe-eCCCEE
Q 045566 81 PD----RCYALT-VRYPLM 94 (112)
Q Consensus 81 ~~----~~~~~~-~~~~~~ 94 (112)
+. ..+.+. .+|++.
T Consensus 721 ~~~~~a~P~tY~~~~GkQY 739 (764)
T TIGR03074 721 PAGGQATPMTYMGKDGKQY 739 (764)
T ss_pred CCCcccCCEEEEecCCEEE
Confidence 43 346666 677643
No 459
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.55 E-value=12 Score=23.08 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcE---EEe-eccCCeeEEEEccCCCEEEEeeCCCcEE
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPV---TVA-MHDAPIKEVAWIPEMNLLATGSWDKTLK 65 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~---~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~ 65 (112)
+.+++..-..+.|....+.....+. .+. .....+..+++.|+|.++++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455555445566655554332222 111 2223577778888877777766666653
No 460
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=79.27 E-value=11 Score=22.61 Aligned_cols=58 Identities=10% Similarity=-0.060 Sum_probs=36.4
Q ss_pred CCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEe
Q 045566 18 CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 78 (112)
Q Consensus 18 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 78 (112)
.++...+||..+-+.+.++.... .=..++ .++..++.+..+..+.++|..+-+....+
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~-EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPG-EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SS-S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred cCCeEEEEccccceEEEEEecCC-cceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence 46778889987777766665332 223444 46777888888889999998877655544
No 461
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=79.02 E-value=22 Score=25.78 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcEEE--eeccCCeeEEEEccC--C----CEEEEeeCCCcEEEeeC-CCCCceEEe--
Q 045566 10 GTTVFSGGCDKQVKMWPLLSGGQPVTV--AMHDAPIKEVAWIPE--M----NLLATGSWDKTLKYWDT-RQPNPVHTQ-- 78 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~--~----~~~~~~~~~~~i~~w~~-~~~~~~~~~-- 78 (112)
...++.++.++.+...++.... +... ...+..|.|+.++|. + ++++.|.++..+.+-.. .....+...
T Consensus 499 ~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l 577 (1096)
T KOG1897|consen 499 ASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL 577 (1096)
T ss_pred ceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc
Confidence 3445555555555555554433 2222 234567899999973 2 26777877766554432 222222111
Q ss_pred cC-----CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 79 QL-----PDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 79 ~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
.. ..-...+..+..+|+++..||.+..|-+
T Consensus 578 ~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 578 SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred CCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 11 1223344455789999999999875543
No 462
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=78.46 E-value=3.9 Score=16.87 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=19.2
Q ss_pred EeeCCCEEEEEeCCCcEEEEECcCC
Q 045566 87 LTVRYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 87 ~~~~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
+.-.+++++.+..++.+.+.|+.++
T Consensus 7 v~v~g~yaYva~~~~Gl~IvDISnP 31 (42)
T PF08309_consen 7 VAVSGNYAYVADGNNGLVIVDISNP 31 (42)
T ss_pred EEEECCEEEEEeCCCCEEEEECCCC
Confidence 3446778888888888999998776
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=78.17 E-value=3.5 Score=16.15 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=11.0
Q ss_pred cCCeeEEEEccCCCEEEEe
Q 045566 40 DAPIKEVAWIPEMNLLATG 58 (112)
Q Consensus 40 ~~~v~~~~~~~~~~~~~~~ 58 (112)
...-....|+|+|+.++-.
T Consensus 8 ~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEE
T ss_pred CccccCEEEecCCCEEEEE
Confidence 3345566788887766543
No 464
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=76.71 E-value=13 Score=21.95 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=39.9
Q ss_pred CeeEEEcCCCCEEEEEc---CCCcEEEEEcCC---CCC------cEEEeeccCCeeEEEEccCCCEEEEeeCCC
Q 045566 1 VLCSTWKDDGTTVFSGG---CDKQVKMWPLLS---GGQ------PVTVAMHDAPIKEVAWIPEMNLLATGSWDK 62 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~---~~~~v~~~~~~~---~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 62 (112)
|..+.++|||..++.-. .++.|.+--+.. +.+ ..........+..+.|.+++.+++.+...+
T Consensus 114 I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 114 ITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 57899999999887655 346777665432 211 111122346789999999888777665443
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.59 E-value=8.1 Score=27.63 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.4
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcC
Q 045566 6 WKDDGTTVFSGGCDKQVKMWPLL 28 (112)
Q Consensus 6 ~~~~~~~l~~~~~~~~v~~~~~~ 28 (112)
.+|||..++.++.||.++.|-+.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeee
Confidence 68999999999999999988754
No 466
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=75.89 E-value=15 Score=22.34 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCcEEEEEcCCC-CCcEEEeeccCCeeEEEEccCCCEEEE-eeCCCcEEEeeCC
Q 045566 10 GTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDKTLKYWDTR 70 (112)
Q Consensus 10 ~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~i~~w~~~ 70 (112)
+++++.|+++|...+ +.... .....+ .+...|+++...+..+.+++ ++..+.++.+++.
T Consensus 13 ~~~lL~GTe~Gly~~-~~~~~~~~~~kl-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 13 GKWLLVGTEEGLYVL-NISDQPGTLEKL-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CcEEEEEeCCceEEE-EcccCCCCeEEe-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 368999999885544 44432 222222 24568899999886665544 4445569999873
No 467
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=75.73 E-value=19 Score=25.78 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=35.2
Q ss_pred eEEEcCCCCEEEEE-cC-----CCcEEEEEcCCCC-CcEEEeeccCCeeEEEEccCCCEE
Q 045566 3 CSTWKDDGTTVFSG-GC-----DKQVKMWPLLSGG-QPVTVAMHDAPIKEVAWIPEMNLL 55 (112)
Q Consensus 3 ~~~~~~~~~~l~~~-~~-----~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 55 (112)
+-+|||||++++-| +. ...|.+.++.+.. .+..+......|..-....+|...
T Consensus 354 sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ 413 (912)
T TIGR02171 354 HPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTV 413 (912)
T ss_pred cCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeE
Confidence 44789999999873 32 2358888887654 346676666777766666666543
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.46 E-value=28 Score=25.40 Aligned_cols=26 Identities=8% Similarity=0.080 Sum_probs=22.9
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcC
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLL 28 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~ 28 (112)
.++|+|..++++.+...|.+++|-..
T Consensus 40 ~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 40 ALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred ceeeccccceEEEEEecccEEEeccc
Confidence 57899999999999999999999654
No 469
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=71.96 E-value=31 Score=24.24 Aligned_cols=64 Identities=17% Similarity=-0.019 Sum_probs=40.3
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-------------e--e----ccCCeeEEEEccCCCEEEEeeCCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-------------A--M----HDAPIKEVAWIPEMNLLATGSWDK 62 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-------------~--~----~~~~v~~~~~~~~~~~~~~~~~~~ 62 (112)
.+++...-+..++..-.||.|.++|-.+.+.+... . + .......++|+|.+..++.-..++
T Consensus 263 ~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~ 342 (753)
T PF11635_consen 263 VSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDG 342 (753)
T ss_pred EEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCC
Confidence 34555556678888999999999997655332221 0 0 111233467888777777777777
Q ss_pred cEE
Q 045566 63 TLK 65 (112)
Q Consensus 63 ~i~ 65 (112)
.+.
T Consensus 343 ~~~ 345 (753)
T PF11635_consen 343 KTK 345 (753)
T ss_pred Cce
Confidence 754
No 470
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=71.48 E-value=14 Score=19.81 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=43.5
Q ss_pred EEEEEcCCCcEEEEEcCCCCCcEEEeeccCCee------------EEEEccCCCEEEEeeCCCcEEEeeCCCCCceE
Q 045566 12 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK------------EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH 76 (112)
Q Consensus 12 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~------------~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 76 (112)
..+....||.+.+++..+++.+..+...++... ......+.++.++.-.||.+.+-|..++..+.
T Consensus 43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~ 119 (135)
T TIGR03054 43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIE 119 (135)
T ss_pred EEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEE
Confidence 345567788899988888888777753332211 11233456777888888888888888776553
No 471
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=71.30 E-value=26 Score=22.98 Aligned_cols=100 Identities=6% Similarity=-0.005 Sum_probs=0.0
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEE-------eeccCCeeEEEEccCC------CEEEEee---------
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-------AMHDAPIKEVAWIPEM------NLLATGS--------- 59 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~------~~~~~~~--------- 59 (112)
..++|.|+++.|++--..|.|++++.......... ...+.....++++|+- .++....
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Q ss_pred -CCCcEEEeeCCCC-------CceEEec-----CCCeEEEEeeCCCEEEEEeCCC
Q 045566 60 -WDKTLKYWDTRQP-------NPVHTQQ-----LPDRCYALTVRYPLMVVGTADR 101 (112)
Q Consensus 60 -~~~~i~~w~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~ 101 (112)
....|.-+.+... +.+..-. +....+.|.|++.++++.+..+
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 472
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=71.20 E-value=23 Score=22.22 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.0
Q ss_pred CCeeEEEEccCCCEEEEee
Q 045566 41 APIKEVAWIPEMNLLATGS 59 (112)
Q Consensus 41 ~~v~~~~~~~~~~~~~~~~ 59 (112)
.....+.|.|+|.+.++-+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 3467899999998766554
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.80 E-value=18 Score=21.02 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=30.0
Q ss_pred CEEEEeeCCCcEEEeeCCCCC--ceEEecC--CCeEEEEeeCCCEEEEEeC
Q 045566 53 NLLATGSWDKTLKYWDTRQPN--PVHTQQL--PDRCYALTVRYPLMVVGTA 99 (112)
Q Consensus 53 ~~~~~~~~~~~i~~w~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 99 (112)
..++.+...+.|.+|++.+.. .+..+.. .+..+.++..|+++++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 344344566779999998443 3444433 3456777788898888643
No 474
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.38 E-value=5.5 Score=26.23 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=38.6
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEE
Q 045566 4 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLL 55 (112)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 55 (112)
+.|++....++.+...+.+.+++..+.+.+...-.|...++++++.+++..+
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 3578888888888888999999876655544433477888999998876443
No 475
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=6.3 Score=28.10 Aligned_cols=77 Identities=12% Similarity=-0.051 Sum_probs=47.5
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCcEEEeeccCC-eeEEE------E-ccC---CCE--EEEeeCCCcEEEeeC
Q 045566 3 CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVA------W-IPE---MNL--LATGSWDKTLKYWDT 69 (112)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~------~-~~~---~~~--~~~~~~~~~i~~w~~ 69 (112)
.++.+|+|++.++...-+.|.+.|+.....++..++.++. +.-+. + .+. -.+ .+-+-..|.+.+|.+
T Consensus 326 ~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEVW~~ 405 (1244)
T KOG2727|consen 326 KLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEVWQM 405 (1244)
T ss_pred eeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCCCccCcCceeEEEEEecccccHHHHHHh
Confidence 5788999999999998899999998765544444443322 11111 0 111 111 233456777888988
Q ss_pred CCCCceEEec
Q 045566 70 RQPNPVHTQQ 79 (112)
Q Consensus 70 ~~~~~~~~~~ 79 (112)
+++..+..+.
T Consensus 406 q~gpRV~Afn 415 (1244)
T KOG2727|consen 406 QTGPRVLAFN 415 (1244)
T ss_pred ccCCeEEEEe
Confidence 8887665553
No 476
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.44 E-value=40 Score=24.02 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=40.8
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEecCCCeEEEEeeCCCEEEEEeCCC-cEEEEECcCC
Q 045566 42 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADR-NLVVFNLQNP 111 (112)
Q Consensus 42 ~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~v~~~d~~~~ 111 (112)
.+..+.+.+..+.++..+..+.+.--+++++..+...-.....-.. .-...-+.+.|| .++.||..+|
T Consensus 37 k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~--~~~~~~~iS~dg~~lr~wn~~~g 105 (910)
T KOG2103|consen 37 KVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGL--GVPLTNTISVDGRYLRSWNTNNG 105 (910)
T ss_pred eEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCccc--CcceeEEEccCCcEEEeecCCCc
Confidence 4566777777778888888888888888888877555322211110 111111234444 5788887765
No 477
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=67.41 E-value=2.2 Score=15.20 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=5.8
Q ss_pred EEcCCCCE
Q 045566 5 TWKDDGTT 12 (112)
Q Consensus 5 ~~~~~~~~ 12 (112)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 47888875
No 478
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.09 E-value=6.7 Score=14.55 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=14.4
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEe
Q 045566 42 PIKEVAWIPEMNLLATGSWDKTLKYW 67 (112)
Q Consensus 42 ~v~~~~~~~~~~~~~~~~~~~~i~~w 67 (112)
.+.+++.. ..+++.+...+.+++|
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEec
Confidence 34555543 3466666667777765
No 479
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.05 E-value=26 Score=21.32 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEee------CCCcEEEeeCCCCC
Q 045566 19 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS------WDKTLKYWDTRQPN 73 (112)
Q Consensus 19 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~i~~w~~~~~~ 73 (112)
...|.+||....+-...-..-.+.|+.+.|..+.++++.|. ....+..||..+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 45688999764432222223456789999987767777664 34557788887654
No 480
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=64.68 E-value=20 Score=19.22 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=36.8
Q ss_pred EEccCCCEEEEeeCCCcEEEeeCCCCC--------ceEEe--cCCCeEEEEee-----CCCEEEEEeCCCcEEEEECcCC
Q 045566 47 AWIPEMNLLATGSWDKTLKYWDTRQPN--------PVHTQ--QLPDRCYALTV-----RYPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 47 ~~~~~~~~~~~~~~~~~i~~w~~~~~~--------~~~~~--~~~~~~~~~~~-----~~~~~~~~~~d~~v~~~d~~~~ 111 (112)
.|....+.++.++..+.|.+++..... .+..+ ...+++++-.+ ....|+.|+ ...+..||+.+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 455555677777788888888765332 22222 33444444333 234555554 456888887653
No 481
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=64.52 E-value=51 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=16.8
Q ss_pred CCeEEEEeeCCCEEEEEeCCCcEEEEEC
Q 045566 81 PDRCYALTVRYPLMVVGTADRNLVVFNL 108 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~v~~~d~ 108 (112)
.+.++.-+.+|+.+++|..| +.+|.+
T Consensus 183 nV~civs~e~GrIFf~g~~d--~nvyEl 208 (1263)
T COG5308 183 NVRCIVSEEDGRIFFGGEND--PNVYEL 208 (1263)
T ss_pred eeEEEEeccCCcEEEecCCC--CCeEEE
Confidence 34444445578888888777 666764
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.51 E-value=15 Score=24.73 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=23.7
Q ss_pred eeEEEcCCC---CEEEEEcCCCcEEEEEcCCCCC
Q 045566 2 LCSTWKDDG---TTVFSGGCDKQVKMWPLLSGGQ 32 (112)
Q Consensus 2 ~~~~~~~~~---~~l~~~~~~~~v~~~~~~~~~~ 32 (112)
..++|+|+. ..+..-+.|..+++|+......
T Consensus 169 ~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 169 KQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 357899965 5777778889999999875543
No 483
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=64.29 E-value=32 Score=21.44 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=42.8
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEeeCC------CCCce-EEecC--------CCeEEEEeeCC------------CEEEE
Q 045566 44 KEVAWIPEMNLLATGSWDKTLKYWDTR------QPNPV-HTQQL--------PDRCYALTVRY------------PLMVV 96 (112)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~i~~w~~~------~~~~~-~~~~~--------~~~~~~~~~~~------------~~~~~ 96 (112)
..++++|.+.+.++....+...+||.. ..+.+ ..+.. ..+.+.|+... ..++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 578999999999998889999999986 12222 22221 12333443221 23678
Q ss_pred EeCCCcEEEEEC
Q 045566 97 GTADRNLVVFNL 108 (112)
Q Consensus 97 ~~~d~~v~~~d~ 108 (112)
++.||+|.-|..
T Consensus 106 ~tEdGTisaW~p 117 (336)
T TIGR03118 106 VTEDGTLSGWAP 117 (336)
T ss_pred EeCCceEEeecC
Confidence 889999999963
No 484
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=62.50 E-value=49 Score=23.73 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=35.0
Q ss_pred EEEEcCCCcEEEEEcCCCCCcEEEe---eccCCeeEEEEccCCCEEEEeeCCCcEEEeeCC
Q 045566 13 VFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 70 (112)
Q Consensus 13 l~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~ 70 (112)
++-++.+|.|.++...+........ .|...|+++...-.+-+++..+.+- +++++..
T Consensus 638 ~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~-~rlfhte 697 (925)
T KOG3522|consen 638 FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE-ERLFHTE 697 (925)
T ss_pred eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE-EEEeccc
Confidence 4557788999999887665544433 3456678887776665555444443 3333433
No 485
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=62.30 E-value=58 Score=23.64 Aligned_cols=53 Identities=8% Similarity=0.039 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCCCcEEE-eeccCCeeEEEEccCCCEEEE-eeCCC-----cEEEeeCCCC
Q 045566 19 DKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLAT-GSWDK-----TLKYWDTRQP 72 (112)
Q Consensus 19 ~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-~~~~~-----~i~~w~~~~~ 72 (112)
.+.+.+-|.....+ +.+ ..+..++..=+|+|||+.++- .+..+ .|++.++.+.
T Consensus 328 ~~~L~~~D~dG~n~-~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 328 TGNLAYIDYTKGAS-RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred CCeEEEEecCCCCc-eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 34777777654343 333 346778888899999999876 33332 3777788754
No 486
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=61.51 E-value=47 Score=22.33 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=8.3
Q ss_pred EEEcCCCCEEEEE
Q 045566 4 STWKDDGTTVFSG 16 (112)
Q Consensus 4 ~~~~~~~~~l~~~ 16 (112)
++|+|+|++++.-
T Consensus 441 L~~d~~G~LwI~e 453 (524)
T PF05787_consen 441 LAFDPDGNLWIQE 453 (524)
T ss_pred eEECCCCCEEEEe
Confidence 5677777765543
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=61.27 E-value=35 Score=20.83 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=14.7
Q ss_pred CCCEEEEeeCCC----cEEEeeCCCCC
Q 045566 51 EMNLLATGSWDK----TLKYWDTRQPN 73 (112)
Q Consensus 51 ~~~~~~~~~~~~----~i~~w~~~~~~ 73 (112)
++..++.|+.++ .+..||+.+.+
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCe
Confidence 566777776553 24578877655
No 488
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=60.05 E-value=10 Score=24.15 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.3
Q ss_pred CCEEEEEeCCCcEEEEECcCC
Q 045566 91 YPLMVVGTADRNLVVFNLQNP 111 (112)
Q Consensus 91 ~~~~~~~~~d~~v~~~d~~~~ 111 (112)
|-.+++++.|..+.+||++..
T Consensus 341 Gy~lvtgGTDnHlvLvDLr~~ 361 (477)
T KOG2467|consen 341 GYKLVTGGTDNHLVLVDLRPK 361 (477)
T ss_pred CceEecCCccceEEEEecccc
Confidence 557999999999999999863
No 489
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=58.97 E-value=12 Score=14.87 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=13.6
Q ss_pred eeEEEcCCCCEEEEEcCCC
Q 045566 2 LCSTWKDDGTTVFSGGCDK 20 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~ 20 (112)
..++.+++|+..++|..++
T Consensus 16 ~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred EEEEECCCCCEEEEEeecC
Confidence 4677888888777776554
No 490
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=57.96 E-value=9 Score=13.89 Aligned_cols=10 Identities=10% Similarity=0.564 Sum_probs=5.9
Q ss_pred CCCcEEEEEC
Q 045566 99 ADRNLVVFNL 108 (112)
Q Consensus 99 ~d~~v~~~d~ 108 (112)
.|..|.-||+
T Consensus 13 sdksi~hwdf 22 (28)
T PRK14751 13 SDKSIYHWDF 22 (28)
T ss_pred CcCceeeeee
Confidence 3556666664
No 491
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=57.89 E-value=18 Score=23.03 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=22.3
Q ss_pred eeEEEcCCCCEEEEEcCCCcEEEEEcCC
Q 045566 2 LCSTWKDDGTTVFSGGCDKQVKMWPLLS 29 (112)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 29 (112)
.+++..+..+.+++-..++.+.+|++..
T Consensus 193 ~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 193 VQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4677778778999999999999999975
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=57.81 E-value=38 Score=20.17 Aligned_cols=104 Identities=16% Similarity=0.322 Sum_probs=56.1
Q ss_pred EEcCCCCEEEEEcC-C--CcEEEEEcCCCC---CcEEEe---eccCCeeEEEEccCCCEEEEeeCCCc-EEEeeCCCC--
Q 045566 5 TWKDDGTTVFSGGC-D--KQVKMWPLLSGG---QPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKT-LKYWDTRQP-- 72 (112)
Q Consensus 5 ~~~~~~~~l~~~~~-~--~~v~~~~~~~~~---~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~w~~~~~-- 72 (112)
.+-++|+.+.+|+. + ..+++++..... ...+.. ....-.-+...-|+|+.++.|+.... ..+|..+..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 35578999988865 2 347777754411 111110 11222334556678999888877644 455544221
Q ss_pred CceEE-ec------CC---CeEEEEeeCCCEEEEEeCCCcEEEEECcC
Q 045566 73 NPVHT-QQ------LP---DRCYALTVRYPLMVVGTADRNLVVFNLQN 110 (112)
Q Consensus 73 ~~~~~-~~------~~---~~~~~~~~~~~~~~~~~~d~~v~~~d~~~ 110 (112)
..... +. .. ...+.+.|+|+.++.+..++. +||..+
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~ 198 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKT 198 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCC
Confidence 11111 10 01 135667889999888876544 455544
No 493
>PLN02153 epithiospecifier protein
Probab=56.95 E-value=44 Score=20.62 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=13.8
Q ss_pred CCCEEEEeeCC-----------CcEEEeeCCCCC
Q 045566 51 EMNLLATGSWD-----------KTLKYWDTRQPN 73 (112)
Q Consensus 51 ~~~~~~~~~~~-----------~~i~~w~~~~~~ 73 (112)
+++.++.|+.+ ..+.+||+.+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 45666666643 246678877654
No 494
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=56.33 E-value=28 Score=24.13 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCcEEEeeccCCeeEEEEccCCCEEEEeeCC-CcEEEeeC
Q 045566 22 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD-KTLKYWDT 69 (112)
Q Consensus 22 v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~w~~ 69 (112)
+.+-|+.....+..++.|..++..++|.+.+..+++..-. +.|.++.+
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence 4445555555667788899999999999999988887654 44666544
No 495
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.56 E-value=82 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=22.2
Q ss_pred ccCCCEEEEeeCCCcEEEeeCCCCCc
Q 045566 49 IPEMNLLATGSWDKTLKYWDTRQPNP 74 (112)
Q Consensus 49 ~~~~~~~~~~~~~~~i~~w~~~~~~~ 74 (112)
.+++..++++-.|+.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 56788999999999999999987643
No 496
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=54.50 E-value=71 Score=22.20 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=36.8
Q ss_pred ccCCCEEEEeeCCCcEEEeeCCCCCceEEec----CCCeEEEE--eeCCCEEEEEeCCCcEEEEE
Q 045566 49 IPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ----LPDRCYAL--TVRYPLMVVGTADRNLVVFN 107 (112)
Q Consensus 49 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~d~~v~~~d 107 (112)
+.-++..+.-.....+.+||.+.+....... ..+..+.| .|+++.+++.+....|.++-
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3334433344445669999998776433222 23344444 46788899989999988874
No 497
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.46 E-value=76 Score=22.59 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=30.2
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCCCceEEec
Q 045566 41 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ 79 (112)
Q Consensus 41 ~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 79 (112)
+.+..+..+|+.++++--..+|.+.+-+....+....+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 456778888888999888889999888777666655554
No 498
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=54.43 E-value=17 Score=14.95 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=3.7
Q ss_pred EEEEECcC
Q 045566 103 LVVFNLQN 110 (112)
Q Consensus 103 v~~~d~~~ 110 (112)
+.+||+.+
T Consensus 31 ~~~~d~~~ 38 (49)
T PF13418_consen 31 LWIFDIET 38 (49)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 44455443
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=54.24 E-value=33 Score=21.97 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=25.1
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEeeCCCC
Q 045566 41 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 72 (112)
Q Consensus 41 ~~v~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 72 (112)
..+..+...+..+.+++...++.|.+|++...
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999888899999999999999999753
No 500
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=52.94 E-value=65 Score=21.31 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=21.3
Q ss_pred CeeEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCcE
Q 045566 1 VLCSTWKDDGTTVFSGG-CDKQVKMWPLLSGGQPV 34 (112)
Q Consensus 1 v~~~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~ 34 (112)
|+.+..|.|.++|...+ .+|.++-||+.......
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 46788899999886654 58999999998765543
Done!