BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045567
         (74 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CIH|A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From
           Bacteroides Thetaiotaomicron
          Length = 739

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 40  GYFVLYSKKKPEASALDVAKVTAGVAR 66
           GY  + S+++P+A+   V KV+ GV R
Sbjct: 690 GYLTIQSRRQPKANXGTVEKVSEGVWR 716


>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
          Dehydrogenase From The Hyperthermophilic Bacterium
          Thermotoga Maritima At 2.5 Angstroms Resolution
 pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
          Dehydrogenase From The Hyperthermophilic Bacterium
          Thermotoga Maritima At 2.5 Angstroms Resolution
          Length = 332

 Score = 25.4 bits (54), Expect = 9.4,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 27 KMALTGFAFAGIIGYFVLYSKKKPEASALDVAKVT 61
          ++A+ GF   G + Y ++Y +K P+   + +  +T
Sbjct: 2  RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,049,166
Number of Sequences: 62578
Number of extensions: 59563
Number of successful extensions: 131
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 2
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)