Query 045567
Match_columns 74
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 05:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_B Protein transport prote 89.7 0.15 5E-06 32.5 1.7 18 26-43 51-68 (80)
2 1rh5_B Preprotein translocase 89.4 0.16 5.5E-06 31.7 1.7 18 26-43 38-55 (74)
3 3mp7_B Preprotein translocase 88.3 0.22 7.5E-06 29.9 1.7 18 26-43 34-51 (61)
4 2wwb_B SEC61gamma, protein tra 88.3 0.15 5.1E-06 31.4 1.0 18 26-43 37-54 (68)
5 3bo0_B Preprotein translocase 49.3 8.8 0.0003 21.8 1.7 17 27-43 37-53 (65)
6 2k1k_A Ephrin type-A receptor 34.0 16 0.00056 19.7 1.2 13 31-43 22-34 (38)
7 3n2f_G Na+/K+ ATPase gamma sub 28.8 29 0.00098 18.5 1.5 19 21-39 3-21 (31)
8 2k9y_A Ephrin type-A receptor 24.8 37 0.0013 17.5 1.5 8 30-37 20-27 (41)
9 1v54_L VIIIA, cytochrome C oxi 22.1 52 0.0018 18.5 1.9 12 18-29 8-19 (47)
10 1v54_M VIIIB, IX, cytochrome C 19.5 88 0.003 17.8 2.5 20 20-39 7-26 (46)
No 1
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=89.69 E-value=0.15 Score=32.46 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.7
Q ss_pred hHHHHHhHHHHhhhhhhe
Q 045567 26 LKMALTGFAFAGIIGYFV 43 (74)
Q Consensus 26 ~~mai~G~~i~~~igY~V 43 (74)
.+.+..||+|+|.|||++
T Consensus 51 ak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 51 VKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457789999999999985
No 2
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=89.42 E-value=0.16 Score=31.65 Aligned_cols=18 Identities=39% Similarity=0.820 Sum_probs=15.7
Q ss_pred hHHHHHhHHHHhhhhhhe
Q 045567 26 LKMALTGFAFAGIIGYFV 43 (74)
Q Consensus 26 ~~mai~G~~i~~~igY~V 43 (74)
.+.+..||+|+|+|||++
T Consensus 38 ak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 38 AKVTALGISLLGIIGYII 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457789999999999986
No 3
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=88.32 E-value=0.22 Score=29.93 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=15.6
Q ss_pred hHHHHHhHHHHhhhhhhe
Q 045567 26 LKMALTGFAFAGIIGYFV 43 (74)
Q Consensus 26 ~~mai~G~~i~~~igY~V 43 (74)
.+.+..|++|+|+|||++
T Consensus 34 ak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 34 AKITGLGIILIGLIGMLI 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456789999999999986
No 4
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=88.26 E-value=0.15 Score=31.36 Aligned_cols=18 Identities=44% Similarity=0.842 Sum_probs=15.4
Q ss_pred hHHHHHhHHHHhhhhhhe
Q 045567 26 LKMALTGFAFAGIIGYFV 43 (74)
Q Consensus 26 ~~mai~G~~i~~~igY~V 43 (74)
.+.+..||+++|.|||++
T Consensus 37 ak~~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 37 AMATAIGFAIMGFIGFFV 54 (68)
T ss_dssp HHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778999999999985
No 5
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=49.29 E-value=8.8 Score=21.79 Aligned_cols=17 Identities=41% Similarity=0.892 Sum_probs=15.1
Q ss_pred HHHHHhHHHHhhhhhhe
Q 045567 27 KMALTGFAFAGIIGYFV 43 (74)
Q Consensus 27 ~mai~G~~i~~~igY~V 43 (74)
..++.|+++++++||++
T Consensus 37 ~~t~vv~~~v~~i~~~i 53 (65)
T 3bo0_B 37 KVTALGISLLGIIGYII 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 67899999999999875
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=34.04 E-value=16 Score=19.75 Aligned_cols=13 Identities=31% Similarity=0.023 Sum_probs=7.4
Q ss_pred HhHHHHhhhhhhe
Q 045567 31 TGFAFAGIIGYFV 43 (74)
Q Consensus 31 ~G~~i~~~igY~V 43 (74)
.|+++++++.||.
T Consensus 22 ~gv~li~~l~~~~ 34 (38)
T 2k1k_A 22 LGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455566666653
No 7
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=28.80 E-value=29 Score=18.50 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.4
Q ss_pred CCCChhHHHHHhHHHHhhh
Q 045567 21 LGQCPLKMALTGFAFAGII 39 (74)
Q Consensus 21 Lp~~p~~mai~G~~i~~~i 39 (74)
++|..-+..++|+.+.+++
T Consensus 3 F~yDy~tLrigGLi~a~vL 21 (31)
T 3n2f_G 3 FYYDYETVRNGGLIFAALA 21 (31)
T ss_dssp CCCCHHHHHHHHTTTHHHH
T ss_pred CCCChHHHhhcchhHHHHH
Confidence 5678889999999887765
No 8
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=24.80 E-value=37 Score=17.50 Aligned_cols=8 Identities=13% Similarity=0.086 Sum_probs=4.6
Q ss_pred HHhHHHHh
Q 045567 30 LTGFAFAG 37 (74)
Q Consensus 30 i~G~~i~~ 37 (74)
++|+++++
T Consensus 20 v~Gv~ll~ 27 (41)
T 2k9y_A 20 AVGVVLLL 27 (41)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 35666655
No 9
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=22.07 E-value=52 Score=18.51 Aligned_cols=12 Identities=8% Similarity=-0.191 Sum_probs=9.4
Q ss_pred cccCCCChhHHH
Q 045567 18 RKSLGQCPLKMA 29 (74)
Q Consensus 18 R~~Lp~~p~~ma 29 (74)
+.+|||++..-.
T Consensus 8 ~sNLPF~~~nk~ 19 (47)
T 1v54_L 8 GKNIPFSVENKW 19 (47)
T ss_dssp TTSSSSCCSSHH
T ss_pred CCcCCcCCCccc
Confidence 679999987655
No 10
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=19.50 E-value=88 Score=17.84 Aligned_cols=20 Identities=10% Similarity=-0.159 Sum_probs=16.1
Q ss_pred cCCCChhHHHHHhHHHHhhh
Q 045567 20 SLGQCPLKMALTGFAFAGII 39 (74)
Q Consensus 20 ~Lp~~p~~mai~G~~i~~~i 39 (74)
+-|.+++-++|+..+|++++
T Consensus 7 ~~~~s~~E~aigl~v~f~~~ 26 (46)
T 1v54_M 7 KTPTSPKEQAIGLSVTFLSF 26 (46)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 55789999999888877665
Done!