Query 045567
Match_columns 74
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 05:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045567.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045567hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 77.1 0.55 4E-05 26.9 1.7 17 27-43 28-44 (56)
2 d1n5ua3 a.126.1.1 (A:389-584) 50.6 1.6 0.00012 28.1 0.1 22 41-62 19-40 (196)
3 d1kxpd2 a.126.1.1 (D:215-404) 45.8 2.1 0.00015 27.3 0.1 22 41-62 21-42 (190)
4 d1n5ua2 a.126.1.1 (A:197-388) 43.4 2.4 0.00018 27.1 0.1 22 41-62 19-40 (192)
5 d1kxpd1 a.126.1.1 (D:17-214) V 42.5 2.5 0.00018 27.3 0.1 22 41-62 28-49 (198)
6 d1n5ua1 a.126.1.1 (A:2-196) Se 37.0 3.4 0.00025 26.4 0.0 22 41-62 22-43 (195)
7 d1ixsa_ a.5.1.1 (A:) DNA helic 23.1 16 0.0011 20.4 1.2 17 47-63 31-47 (50)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 22.3 12 0.00084 21.3 0.6 29 23-51 20-48 (91)
9 d1sbza_ c.34.1.1 (A:) Probable 19.5 19 0.0014 22.3 1.2 15 52-66 86-100 (186)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 19.1 27 0.002 18.0 1.6 16 28-43 8-23 (34)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=77.15 E-value=0.55 Score=26.88 Aligned_cols=17 Identities=41% Similarity=0.892 Sum_probs=14.5
Q ss_pred HHHHHhHHHHhhhhhhe
Q 045567 27 KMALTGFAFAGIIGYFV 43 (74)
Q Consensus 27 ~mai~G~~i~~~igY~V 43 (74)
+.+..|++++|.|||++
T Consensus 28 ~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 28 KVTALGISLLGIIGYII 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678999999999986
No 2
>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.65 E-value=1.6 Score=28.07 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.5
Q ss_pred hheeeeccCCCcchhhhhhhhh
Q 045567 41 YFVLYSKKKPEASALDVAKVTA 62 (74)
Q Consensus 41 Y~VLY~kKKPEasA~DVAKVa~ 62 (74)
++|.|++|-|.+|-.||.|++-
T Consensus 19 ~lv~~sqk~P~asfeel~~l~~ 40 (196)
T d1n5ua3 19 LLVRYTKKVPQVSTPTLVEVSR 40 (196)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHH
Confidence 5789999999999999998864
No 3
>d1kxpd2 a.126.1.1 (D:215-404) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.80 E-value=2.1 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.7
Q ss_pred hheeeeccCCCcchhhhhhhhh
Q 045567 41 YFVLYSKKKPEASALDVAKVTA 62 (74)
Q Consensus 41 Y~VLY~kKKPEasA~DVAKVa~ 62 (74)
++|.|++|-|.+|-.||.|++-
T Consensus 21 ~lv~~sqk~P~a~feel~~l~~ 42 (190)
T d1kxpd2 21 NLIKLAQKVPTADLEDVLPLAE 42 (190)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 6789999999999999998864
No 4
>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.37 E-value=2.4 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.4
Q ss_pred hheeeeccCCCcchhhhhhhhh
Q 045567 41 YFVLYSKKKPEASALDVAKVTA 62 (74)
Q Consensus 41 Y~VLY~kKKPEasA~DVAKVa~ 62 (74)
.+|.|++|-|.+|-.||.|++-
T Consensus 19 ~lv~~sqk~p~asfeel~~l~~ 40 (192)
T d1n5ua2 19 AVARLSQRFPKAEFAEVSKLVT 40 (192)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 4688999999999999998864
No 5
>d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.54 E-value=2.5 Score=27.25 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.3
Q ss_pred hheeeeccCCCcchhhhhhhhh
Q 045567 41 YFVLYSKKKPEASALDVAKVTA 62 (74)
Q Consensus 41 Y~VLY~kKKPEasA~DVAKVa~ 62 (74)
++|.|++|-|.+|-.||.|++-
T Consensus 28 ~lv~~sQk~P~asfeel~~l~~ 49 (198)
T d1kxpd1 28 SLVLYSRKFPSGTFEQVSQLVK 49 (198)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHH
Confidence 5688999999999999998864
No 6
>d1n5ua1 a.126.1.1 (A:2-196) Serum albumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.99 E-value=3.4 Score=26.39 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=19.3
Q ss_pred hheeeeccCCCcchhhhhhhhh
Q 045567 41 YFVLYSKKKPEASALDVAKVTA 62 (74)
Q Consensus 41 Y~VLY~kKKPEasA~DVAKVa~ 62 (74)
.+|.|++|-|.+|-.||-|++-
T Consensus 22 ~lv~~sqk~p~asfeel~~l~~ 43 (195)
T d1n5ua1 22 VLIAFAQYLQQCPFEDHVKLVN 43 (195)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHH
Confidence 5688999999999999998864
No 7
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.13 E-value=16 Score=20.37 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.6
Q ss_pred ccCCCcchhhhhhhhhc
Q 045567 47 KKKPEASALDVAKVTAG 63 (74)
Q Consensus 47 kKKPEasA~DVAKVa~G 63 (74)
-+.||+||.+.-|-+.|
T Consensus 31 ~~nP~a~aq~lIr~aL~ 47 (50)
T d1ixsa_ 31 AQNPKARAQDLIKEALK 47 (50)
T ss_dssp HHCTTCCHHHHHHHHHT
T ss_pred HhCccccHHHHHHHHHh
Confidence 47899999999988765
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=22.27 E-value=12 Score=21.30 Aligned_cols=29 Identities=7% Similarity=-0.157 Sum_probs=21.6
Q ss_pred CChhHHHHHhHHHHhhhhhheeeeccCCC
Q 045567 23 QCPLKMALTGFAFAGIIGYFVLYSKKKPE 51 (74)
Q Consensus 23 ~~p~~mai~G~~i~~~igY~VLY~kKKPE 51 (74)
++..-|++.++++.+.+-|++..-+++++
T Consensus 20 ~~~~i~~iv~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 20 TAFGLMLIVVIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp HHHHHTTTTTTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeeccCC
Confidence 34456788888888999999986666554
No 9
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}
Probab=19.49 E-value=19 Score=22.26 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=13.4
Q ss_pred cchhhhhhhhhccCC
Q 045567 52 ASALDVAKVTAGVAR 66 (74)
Q Consensus 52 asA~DVAKVa~G~a~ 66 (74)
+||.-+||++.|.+|
T Consensus 86 aTanTlAKiA~GiaD 100 (186)
T d1sbza_ 86 CSMKTLAGIRAGYAD 100 (186)
T ss_dssp ECHHHHHHHHHTCCC
T ss_pred ccHhHHHHHHcCCCC
Confidence 688889999999987
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.06 E-value=27 Score=18.02 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.8
Q ss_pred HHHHhHHHHhhhhhhe
Q 045567 28 MALTGFAFAGIIGYFV 43 (74)
Q Consensus 28 mai~G~~i~~~igY~V 43 (74)
-+++|.+.++++|-|.
T Consensus 8 ~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 8 ATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhhhhHhheeeee
Confidence 3678999999998774
Done!