BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045569
         (362 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NX2|A Chain A, Crystal Structure Of Protein Ypsa From Bacillus Subtilis,
           Pfam Duf1273
          Length = 181

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 302 RTPLGFWKKGAFFVHSTNEQLLLYDPNTQ 330
            +PL F +K  FF+  ++  LLLYDP  +
Sbjct: 115 ESPLQFKQKNQFFIDKSDGLLLLYDPEKE 143


>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H1k26 Peptide
 pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H3k9 Peptide
 pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H4k20 Peptide
 pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
          Length = 365

 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 13/58 (22%)

Query: 245 EEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKC--WIKQLSLGPLNG 300
           ++I +    ES  TILG +++S C           DIW M++    W K L+LG   G
Sbjct: 262 DDIDKIKPSESNVTILGRFDYSQC-----------DIWYMRFSTDFWQKMLALGNQVG 308


>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
          Length = 361

 Score = 27.7 bits (60), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 13/58 (22%)

Query: 245 EEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKC--WIKQLSLGPLNG 300
           ++I +    ES  TILG +++S C           DIW M++    W K L+LG   G
Sbjct: 258 DDIDKIKPSESNVTILGRFDYSQC-----------DIWYMRFSMDFWQKMLALGNQVG 304


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,970,213
Number of Sequences: 62578
Number of extensions: 523425
Number of successful extensions: 1250
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1249
Number of HSP's gapped (non-prelim): 6
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)