Query 045569
Match_columns 362
No_of_seqs 198 out of 1542
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2E-36 4.2E-41 260.6 26.0 215 104-330 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 3.7E-16 8E-21 126.8 16.3 137 213-350 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 1.7E-15 3.7E-20 117.8 14.7 104 213-316 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 6.5E-13 1.4E-17 118.6 23.3 314 5-352 3-373 (373)
5 PHA02713 hypothetical protein; 99.3 3.2E-10 7E-15 109.6 23.3 221 94-339 289-544 (557)
6 KOG4441 Proteins containing BT 99.2 3.6E-09 7.9E-14 102.1 22.0 218 94-336 318-554 (571)
7 PHA02713 hypothetical protein; 99.1 7.4E-09 1.6E-13 100.2 20.4 194 119-336 273-497 (557)
8 PHA03098 kelch-like protein; P 99.1 1.6E-08 3.5E-13 98.1 22.4 193 119-336 312-519 (534)
9 PLN02153 epithiospecifier prot 99.1 4.7E-08 1E-12 89.3 23.8 219 103-336 27-292 (341)
10 PHA02790 Kelch-like protein; P 99.1 2.8E-08 6E-13 94.8 22.1 183 119-335 288-477 (480)
11 PF12937 F-box-like: F-box-lik 99.0 1E-10 2.3E-15 73.3 2.2 42 6-47 1-42 (47)
12 KOG4441 Proteins containing BT 99.0 2.4E-08 5.3E-13 96.4 18.7 194 119-336 302-507 (571)
13 PLN02193 nitrile-specifier pro 99.0 2.3E-07 4.9E-12 88.3 24.2 201 119-336 194-418 (470)
14 TIGR03547 muta_rot_YjhT mutatr 98.9 4.3E-07 9.3E-12 83.2 23.4 218 104-336 13-306 (346)
15 TIGR03548 mutarot_permut cycli 98.9 3.5E-07 7.5E-12 82.9 21.5 150 182-336 88-287 (323)
16 PF00646 F-box: F-box domain; 98.9 3.8E-10 8.2E-15 71.2 1.3 45 6-50 3-47 (48)
17 PRK14131 N-acetylneuraminic ac 98.9 5.9E-07 1.3E-11 83.1 21.7 230 92-336 22-328 (376)
18 smart00256 FBOX A Receptor for 98.8 1.7E-09 3.6E-14 65.8 1.2 39 9-47 1-39 (41)
19 PHA02790 Kelch-like protein; P 98.8 6.3E-07 1.4E-11 85.5 18.5 166 94-291 304-476 (480)
20 PHA03098 kelch-like protein; P 98.7 3E-06 6.6E-11 82.3 21.2 183 93-297 327-523 (534)
21 TIGR03548 mutarot_permut cycli 98.6 1E-05 2.2E-10 73.4 21.5 180 118-318 88-311 (323)
22 PLN02153 epithiospecifier prot 98.6 6.5E-06 1.4E-10 75.2 19.8 152 182-337 50-234 (341)
23 PLN02193 nitrile-specifier pro 98.5 2.6E-05 5.7E-10 74.3 21.9 152 182-337 193-360 (470)
24 PRK14131 N-acetylneuraminic ac 98.5 3.3E-05 7.2E-10 71.5 21.6 148 182-334 189-374 (376)
25 TIGR03547 muta_rot_YjhT mutatr 98.2 0.00017 3.8E-09 66.0 19.3 149 183-336 30-235 (346)
26 KOG1230 Protein containing rep 98.2 0.00012 2.5E-09 65.5 15.3 210 119-339 99-351 (521)
27 KOG0281 Beta-TrCP (transducin 97.9 0.00024 5.1E-09 62.0 11.5 44 6-49 75-122 (499)
28 KOG4693 Uncharacterized conser 97.7 0.00073 1.6E-08 57.1 12.0 157 181-339 104-287 (392)
29 KOG2120 SCF ubiquitin ligase, 97.7 1.4E-05 3E-10 68.7 0.8 40 6-45 98-137 (419)
30 KOG4693 Uncharacterized conser 97.5 0.0035 7.5E-08 53.1 13.3 135 181-318 156-310 (392)
31 KOG0379 Kelch repeat-containin 96.8 0.17 3.6E-06 48.6 18.2 202 119-336 89-309 (482)
32 KOG0379 Kelch repeat-containin 96.7 0.13 2.9E-06 49.2 16.9 151 183-338 89-259 (482)
33 KOG1230 Protein containing rep 96.6 0.16 3.4E-06 46.1 15.5 145 183-329 99-276 (521)
34 KOG2997 F-box protein FBX9 [Ge 96.4 0.0011 2.4E-08 57.5 0.9 46 6-51 107-157 (366)
35 PF13964 Kelch_6: Kelch motif 95.2 0.064 1.4E-06 33.5 5.1 40 211-250 5-47 (50)
36 COG3055 Uncharacterized protei 94.7 3.1 6.7E-05 37.4 16.4 133 180-318 194-357 (381)
37 PF02191 OLF: Olfactomedin-lik 94.6 1.5 3.2E-05 38.0 13.5 118 211-337 72-212 (250)
38 PF02897 Peptidase_S9_N: Proly 93.7 4.5 9.9E-05 37.9 16.1 148 182-336 252-412 (414)
39 KOG0310 Conserved WD40 repeat- 93.4 5.8 0.00013 36.9 15.2 202 124-360 8-219 (487)
40 PF01344 Kelch_1: Kelch motif; 93.0 0.3 6.4E-06 29.8 4.7 37 211-247 5-43 (47)
41 KOG4152 Host cell transcriptio 92.9 4.3 9.2E-05 38.3 13.6 158 119-293 58-246 (830)
42 PF13964 Kelch_6: Kelch motif 92.8 0.29 6.3E-06 30.4 4.6 21 118-138 28-48 (50)
43 PF08450 SGL: SMP-30/Gluconola 92.7 5.9 0.00013 34.0 17.6 200 108-339 11-224 (246)
44 TIGR01640 F_box_assoc_1 F-box 92.4 4.4 9.5E-05 34.5 12.9 117 215-338 3-137 (230)
45 PF13360 PQQ_2: PQQ-like domai 92.4 6.1 0.00013 33.5 16.5 188 107-334 35-236 (238)
46 PF07646 Kelch_2: Kelch motif; 92.2 0.48 1E-05 29.3 5.0 39 211-249 5-47 (49)
47 smart00284 OLF Olfactomedin-li 92.0 7.6 0.00016 33.6 13.5 118 211-337 77-217 (255)
48 PF07762 DUF1618: Protein of u 89.2 3.2 7E-05 31.9 8.2 66 233-298 7-99 (131)
49 KOG0274 Cdc4 and related F-box 88.7 25 0.00054 34.3 20.9 43 6-48 108-150 (537)
50 PF10282 Lactonase: Lactonase, 88.6 19 0.00042 32.8 19.3 147 183-336 167-332 (345)
51 smart00612 Kelch Kelch domain. 88.5 0.65 1.4E-05 27.9 3.2 21 182-202 15-35 (47)
52 PF07250 Glyoxal_oxid_N: Glyox 87.4 13 0.00029 32.0 11.4 160 183-352 47-222 (243)
53 PF10282 Lactonase: Lactonase, 87.2 16 0.00034 33.4 12.7 114 217-337 154-286 (345)
54 KOG4341 F-box protein containi 87.1 0.25 5.5E-06 45.2 0.8 38 6-43 72-109 (483)
55 PF13360 PQQ_2: PQQ-like domai 86.6 18 0.0004 30.5 17.8 135 183-334 4-146 (238)
56 COG4257 Vgb Streptogramin lyas 84.8 17 0.00037 31.8 10.4 126 101-254 192-319 (353)
57 PF13418 Kelch_4: Galactose ox 84.7 2.7 5.8E-05 25.8 4.5 31 305-335 7-44 (49)
58 KOG2106 Uncharacterized conser 84.4 38 0.00082 32.2 13.2 116 215-336 285-444 (626)
59 PRK11138 outer membrane biogen 83.0 33 0.00072 31.9 13.0 110 211-334 63-184 (394)
60 PF13418 Kelch_4: Galactose ox 81.1 3.3 7.2E-05 25.3 3.9 37 211-247 5-44 (49)
61 PF06433 Me-amine-dh_H: Methyl 80.2 29 0.00063 31.4 10.7 119 212-336 188-329 (342)
62 PLN02772 guanylate kinase 80.1 14 0.0003 34.3 8.9 74 211-286 28-107 (398)
63 PF08450 SGL: SMP-30/Gluconola 79.6 38 0.00083 28.9 15.3 105 217-335 11-129 (246)
64 PF07893 DUF1668: Protein of u 79.5 50 0.0011 30.2 14.8 129 107-253 75-223 (342)
65 TIGR03300 assembly_YfgL outer 77.6 59 0.0013 29.9 13.1 106 211-333 59-168 (377)
66 smart00564 PQQ beta-propeller 77.3 8.1 0.00017 21.1 4.4 26 309-334 5-30 (33)
67 cd01206 Homer Homer type EVH1 77.3 6 0.00013 29.0 4.6 39 119-168 12-51 (111)
68 PF07646 Kelch_2: Kelch motif; 75.8 6.4 0.00014 24.1 4.0 36 259-294 6-47 (49)
69 KOG2055 WD40 repeat protein [G 74.6 77 0.0017 29.8 13.1 98 231-334 279-380 (514)
70 PF07893 DUF1668: Protein of u 73.4 74 0.0016 29.1 12.6 85 183-272 200-296 (342)
71 TIGR03075 PQQ_enz_alc_DH PQQ-d 73.3 84 0.0018 30.7 12.8 111 211-334 63-195 (527)
72 PRK11138 outer membrane biogen 72.0 85 0.0018 29.2 20.0 106 211-334 250-359 (394)
73 PF05096 Glu_cyclase_2: Glutam 71.3 70 0.0015 27.9 15.8 136 181-334 67-209 (264)
74 PF01011 PQQ: PQQ enzyme repea 70.4 9.6 0.00021 21.9 3.6 24 311-334 1-24 (38)
75 cd01207 Ena-Vasp Enabled-VASP- 70.3 16 0.00034 27.2 5.4 42 119-168 10-51 (111)
76 TIGR03300 assembly_YfgL outer 70.2 90 0.0019 28.7 20.2 134 183-333 156-302 (377)
77 COG3386 Gluconolactonase [Carb 69.9 84 0.0018 28.2 12.0 105 218-333 37-156 (307)
78 PF12458 DUF3686: ATPase invol 69.2 67 0.0015 30.0 10.2 138 103-286 233-385 (448)
79 PF13415 Kelch_3: Galactose ox 68.5 8.2 0.00018 23.6 3.3 21 119-139 20-40 (49)
80 KOG3545 Olfactomedin and relat 68.1 79 0.0017 27.2 11.5 118 211-337 71-211 (249)
81 KOG2502 Tub family proteins [G 67.9 3.2 7E-05 37.1 1.7 39 4-42 43-89 (355)
82 TIGR03074 PQQ_membr_DH membran 67.9 1E+02 0.0022 31.6 12.4 31 211-246 188-220 (764)
83 COG4257 Vgb Streptogramin lyas 66.9 90 0.002 27.5 16.1 219 103-338 67-315 (353)
84 PF13570 PQQ_3: PQQ-like domai 65.5 12 0.00026 21.7 3.4 26 211-241 15-40 (40)
85 COG1520 FOG: WD40-like repeat 64.9 1.2E+02 0.0025 28.0 14.2 132 183-334 36-177 (370)
86 KOG0292 Vesicle coat complex C 62.6 55 0.0012 33.6 8.9 72 259-331 210-283 (1202)
87 TIGR02658 TTQ_MADH_Hv methylam 60.5 1.4E+02 0.003 27.5 13.3 116 214-335 202-338 (352)
88 KOG0301 Phospholipase A2-activ 60.2 1.7E+02 0.0038 29.1 11.6 89 231-328 199-288 (745)
89 PF01344 Kelch_1: Kelch motif; 59.2 36 0.00077 20.2 6.9 39 258-296 5-47 (47)
90 PF14339 DUF4394: Domain of un 58.8 28 0.00061 29.7 5.6 56 106-167 36-93 (236)
91 KOG0647 mRNA export protein (c 55.0 1.4E+02 0.0031 26.5 9.3 60 276-339 49-113 (347)
92 PF03088 Str_synth: Strictosid 54.5 26 0.00057 24.9 4.1 18 319-336 36-53 (89)
93 PF08268 FBA_3: F-box associat 53.7 44 0.00096 25.4 5.7 46 310-355 5-61 (129)
94 KOG0289 mRNA splicing factor [ 51.9 2.1E+02 0.0046 26.9 12.2 114 182-308 369-485 (506)
95 PRK11028 6-phosphogluconolacto 49.2 2E+02 0.0043 25.8 14.4 134 183-329 13-157 (330)
96 KOG0293 WD40 repeat-containing 48.9 1.6E+02 0.0034 27.5 8.9 97 233-336 377-478 (519)
97 KOG1274 WD40 repeat protein [G 47.9 3.4E+02 0.0074 28.1 17.1 180 118-329 26-219 (933)
98 COG3055 Uncharacterized protei 47.1 2.3E+02 0.005 26.0 9.5 84 211-298 40-134 (381)
99 KOG2321 WD40 repeat protein [G 46.7 1.5E+02 0.0033 28.9 8.7 32 101-132 180-211 (703)
100 KOG0649 WD40 repeat protein [G 46.3 1.6E+02 0.0035 25.4 8.0 29 309-337 125-153 (325)
101 KOG2437 Muskelin [Signal trans 45.3 44 0.00095 31.9 5.0 144 121-273 232-394 (723)
102 PLN00181 protein SPA1-RELATED; 44.7 3.8E+02 0.0082 27.7 21.8 185 110-330 547-740 (793)
103 KOG0316 Conserved WD40 repeat- 44.1 2.1E+02 0.0046 24.6 15.5 183 108-334 28-219 (307)
104 PRK11028 6-phosphogluconolacto 43.9 2.4E+02 0.0052 25.2 22.3 116 216-336 184-314 (330)
105 KOG0279 G protein beta subunit 43.3 1.1E+02 0.0024 26.9 6.7 94 233-333 173-267 (315)
106 KOG0321 WD40 repeat-containing 43.0 1.3E+02 0.0029 29.6 7.9 106 219-331 66-178 (720)
107 KOG0289 mRNA splicing factor [ 43.0 2.9E+02 0.0063 26.0 12.2 115 214-336 355-470 (506)
108 TIGR03032 conserved hypothetic 41.9 1.5E+02 0.0032 26.8 7.5 55 210-273 205-260 (335)
109 PLN02772 guanylate kinase 40.3 2E+02 0.0044 26.9 8.5 59 259-317 29-93 (398)
110 PF13088 BNR_2: BNR repeat-lik 38.0 2.6E+02 0.0057 24.1 12.0 126 184-315 136-275 (275)
111 KOG2321 WD40 repeat protein [G 37.9 4E+02 0.0088 26.2 10.2 104 218-332 146-262 (703)
112 PF02191 OLF: Olfactomedin-lik 37.3 2.1E+02 0.0046 24.8 7.8 42 211-252 174-215 (250)
113 PF13013 F-box-like_2: F-box-l 36.9 15 0.00033 27.2 0.7 29 6-34 22-50 (109)
114 PF15408 PH_7: Pleckstrin homo 36.5 12 0.00025 26.1 -0.0 25 23-47 76-100 (104)
115 PF15525 DUF4652: Domain of un 33.8 2.7E+02 0.0059 23.0 7.5 57 279-336 88-156 (200)
116 TIGR03866 PQQ_ABC_repeats PQQ- 33.2 3.1E+02 0.0067 23.5 21.8 183 115-334 50-243 (300)
117 cd00837 EVH1 EVH1 (Enabled, Va 32.8 1.4E+02 0.0031 21.7 5.3 39 119-168 10-48 (104)
118 cd00260 Sialidase Sialidases o 32.3 3.8E+02 0.0083 24.2 11.7 86 211-296 149-242 (351)
119 PF07370 DUF1489: Protein of u 32.2 28 0.0006 26.8 1.4 29 213-241 43-71 (137)
120 COG2706 3-carboxymuconate cycl 31.7 4E+02 0.0087 24.3 13.2 114 220-333 54-180 (346)
121 PF07569 Hira: TUP1-like enhan 30.8 2.5E+02 0.0055 23.7 7.2 36 97-132 11-46 (219)
122 KOG4152 Host cell transcriptio 29.0 5.5E+02 0.012 25.0 12.8 102 183-286 231-362 (830)
123 KOG0291 WD40-repeat-containing 28.9 6.5E+02 0.014 25.8 11.1 116 211-330 249-382 (893)
124 COG4946 Uncharacterized protei 28.9 5.3E+02 0.011 24.8 12.1 142 183-336 288-439 (668)
125 PF00568 WH1: WH1 domain; Int 28.8 1.2E+02 0.0026 22.4 4.3 38 119-168 17-55 (111)
126 PF06058 DCP1: Dcp1-like decap 27.8 1.9E+02 0.0042 21.9 5.4 27 313-339 22-48 (122)
127 KOG1963 WD40 repeat protein [G 27.5 7E+02 0.015 25.7 18.7 100 232-333 432-544 (792)
128 COG3386 Gluconolactonase [Carb 26.7 4.7E+02 0.01 23.5 11.4 59 211-273 217-276 (307)
129 PF03178 CPSF_A: CPSF A subuni 25.9 4.8E+02 0.01 23.3 15.1 96 232-337 62-168 (321)
130 PF00400 WD40: WD domain, G-be 24.3 1.4E+02 0.0029 16.4 5.9 38 289-326 1-39 (39)
131 KOG3926 F-box proteins [Amino 23.7 47 0.001 28.9 1.5 39 6-44 202-241 (332)
132 PF14583 Pectate_lyase22: Olig 23.4 1.3E+02 0.0027 28.0 4.2 102 231-335 167-279 (386)
133 KOG4547 WD40 repeat-containing 23.2 7.1E+02 0.015 24.3 12.7 98 231-333 79-177 (541)
134 KOG0292 Vesicle coat complex C 22.4 7.5E+02 0.016 26.0 9.4 70 259-331 254-351 (1202)
135 KOG0649 WD40 repeat protein [G 22.4 5.2E+02 0.011 22.5 15.0 108 218-339 127-247 (325)
136 PLN02919 haloacid dehalogenase 22.3 1E+03 0.022 25.8 23.0 116 211-332 742-892 (1057)
137 KOG0639 Transducin-like enhanc 22.2 5E+02 0.011 25.1 7.8 100 231-332 439-543 (705)
138 KOG4378 Nuclear protein COP1 [ 21.8 2.8E+02 0.0061 26.6 6.1 54 275-333 185-244 (673)
139 PRK05137 tolB translocation pr 21.8 6.8E+02 0.015 23.5 21.4 187 117-337 225-421 (435)
140 KOG0294 WD40 repeat-containing 21.4 6.1E+02 0.013 22.9 11.0 92 211-313 46-141 (362)
141 PTZ00420 coronin; Provisional 21.3 8.2E+02 0.018 24.3 22.8 105 232-336 189-301 (568)
142 PF07250 Glyoxal_oxid_N: Glyox 20.8 3.8E+02 0.0081 23.2 6.4 84 233-318 47-136 (243)
143 smart00284 OLF Olfactomedin-li 20.7 4.4E+02 0.0095 23.0 6.8 42 211-252 179-220 (255)
144 PF14157 YmzC: YmzC-like prote 20.6 1.4E+02 0.0031 19.5 2.8 28 309-336 28-57 (63)
145 PF12768 Rax2: Cortical protei 20.1 6.2E+02 0.013 22.4 9.4 108 181-294 15-130 (281)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2e-36 Score=260.61 Aligned_cols=215 Identities=25% Similarity=0.411 Sum_probs=162.2
Q ss_pred eeeeeeeEEEeecCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcce
Q 045569 104 VGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSH 183 (362)
Q Consensus 104 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 183 (362)
++|||||||+... ..++||||+||+++.||+++...... ....+|||||+.+++||||++.... .. .....
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~---~~~~~~~G~d~~~~~YKVv~~~~~~-~~----~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK---ESDTYFLGYDPIEKQYKVLCFSDRS-GN----RNQSE 71 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccc---ccceEEEeecccCCcEEEEEEEeec-CC----CCCcc
Confidence 4799999998854 45999999999999999875421111 0125899999999999999997421 11 12457
Q ss_pred EEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCCc-cEEEEEEcCCceee-eecCCCCCCCC--CcE
Q 045569 184 VAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDH-KVILSFHLGNEVFE-EIQEPYIPEST--PTI 259 (362)
Q Consensus 184 ~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~~-~i~~P~~~~~~--~~~ 259 (362)
++||++++++||.++..++... . ...+|++||++||+........ ..|++||+++|+|+ .+++|...... ...
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~--~-~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHP--L-KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred EEEEEeCCCCccccccCCCCcc--c-cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 9999999999999885332211 1 1349999999999997542122 38999999999999 59999765421 267
Q ss_pred EEEECCeEEEEEEcCCCCeEEEEEeeC---CeeEEEEEeCCCC--Cc---eeeEEEeeCCcEEEEecC--Ce-EEEEeCC
Q 045569 260 LGIYNHSLCLLLSHNIENYYDIWVMKY---KCWIKQLSLGPLN--GV---RTPLGFWKKGAFFVHSTN--EQ-LLLYDPN 328 (362)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~~~IW~l~~---~~W~~~~~i~~~~--~~---~~~~~~~~~g~il~~~~~--~~-~~~yd~~ 328 (362)
|++++|+||++........++||+|++ .+|+|+++|+... .+ ..|+++.++|+|++.... .. +++||++
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence 999999999998864345699999997 6799999998421 22 347888889999998763 34 9999998
Q ss_pred CC
Q 045569 329 TQ 330 (362)
Q Consensus 329 ~~ 330 (362)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.72 E-value=3.7e-16 Score=126.76 Aligned_cols=137 Identities=22% Similarity=0.413 Sum_probs=97.3
Q ss_pred eEEECceEEEEeeccCCCc-cEEEEEEcCCcee-eeecCCCCCCC-CC-cEEE-EECCeEEEEEEcCCCCeEEEEEeeC-
Q 045569 213 SVYLDGVCYWLSEFRDNDH-KVILSFHLGNEVF-EEIQEPYIPES-TP-TILG-IYNHSLCLLLSHNIENYYDIWVMKY- 286 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~-~~i~~P~~~~~-~~-~~l~-~~~g~L~l~~~~~~~~~~~IW~l~~- 286 (362)
+|++||++||++....... ..|++||+++|+| +.+++|..... .. ..|+ ..+|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 6899999999998763222 2799999999999 88999987762 22 5674 4478999998755566799999994
Q ss_pred ----CeeEEEEEeCCCCCce------ee-EEEeeCCcEEEEec---C----CeEEEEeCCCCcEEEeeEee---ceEEEE
Q 045569 287 ----KCWIKQLSLGPLNGVR------TP-LGFWKKGAFFVHST---N----EQLLLYDPNTQEMRDLGRKS---FHFSVH 345 (362)
Q Consensus 287 ----~~W~~~~~i~~~~~~~------~~-~~~~~~g~il~~~~---~----~~~~~yd~~~~~~~~v~~~~---~~~~~~ 345 (362)
++|+|.++|+...... .+ +.+..++++++... . ..++.|+ +++..+++.+.. .+..++
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 6899999998543211 12 22233456666543 1 3477777 667777777633 345688
Q ss_pred EEEec
Q 045569 346 IYRES 350 (362)
Q Consensus 346 ~y~~S 350 (362)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 99987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=1.7e-15 Score=117.79 Aligned_cols=104 Identities=27% Similarity=0.449 Sum_probs=81.2
Q ss_pred eEEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCC--CCCCCCcEEEEECCeEEEEEEcCCC--CeEEEEEeeC--
Q 045569 213 SVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPY--IPESTPTILGIYNHSLCLLLSHNIE--NYYDIWVMKY-- 286 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~--~~~~~~~~l~~~~g~L~l~~~~~~~--~~~~IW~l~~-- 286 (362)
|+++||++||++.........|++||+++|+|+.|++|. ........|.+++|+||++...... ..++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 689999999999874345779999999999999999992 2222227899999999999886532 4799999998
Q ss_pred -CeeEEEEEeCCCC-------CceeeEEEeeCCcEEEE
Q 045569 287 -KCWIKQLSLGPLN-------GVRTPLGFWKKGAFFVH 316 (362)
Q Consensus 287 -~~W~~~~~i~~~~-------~~~~~~~~~~~g~il~~ 316 (362)
++|++.+.+-+.. ....+.++.++|+|++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7899987754421 23466777778888887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.59 E-value=6.5e-13 Score=118.62 Aligned_cols=314 Identities=13% Similarity=0.112 Sum_probs=159.8
Q ss_pred CCCcchHHHHHHHHccCCc-cccccccccccchhhhhCChHHHHHHhhccCCCCceeeEE-eeecCCCCCccceeeeecC
Q 045569 5 GDEHFLEETIIEILSKLPV-KSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYM-EKFDGPDESSYPLFLCSLF 82 (362)
Q Consensus 5 ~~~~LP~Dll~eIL~rLP~-ksl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~ 82 (362)
.|++||+|||..|..|||. -+++|||+|||+||+.+....= +.++.. .+.++ ....+. .++.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~~~~------~~~~~~~~~~~~---------~~~~ 66 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNPFRT------RPLILFNPINPS---------ETLT 66 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCCccc------ccccccCcccCC---------CCcc
Confidence 4999999999999999985 5999999999999998764210 000000 01111 000000 0000
Q ss_pred CCCc--cc-ccCccCCCCCccc-eEeeeeeeeEEEee---cCceEEEEeCCCcccccCCCCCcCCCCcccc-eeeeeee-
Q 045569 83 PDET--LT-NLSLQDLDNPVRG-ELVGPYNGIFCIFG---NNNRITLWNRATKESRVLPKCTTVFPKYTSI-FCKCTGF- 153 (362)
Q Consensus 83 ~~~~--~~-~~~~~~~~~p~~~-~~~~s~~GLl~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~-~~~~~~~- 153 (362)
.+.. .. ...+....+ +.. ...++..|+|.-.. ..+++.+.||++|....+|+-.......... ....+.+
T Consensus 67 ~~~~~~~~~~~~ls~~~~-~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 67 DDRSYISRPGAFLSRAAF-FRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred ccccccccccceeeeeEE-EEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 0000 00 000000000 001 11135678888773 3367999999999988777532211111000 0001111
Q ss_pred eecCCC---CCeE-EEEEEEEeecccccccCcceEEEEE------CCCCCceecccCCCccccccCCcceEEECceEEEE
Q 045569 154 GLDPMS---TDYK-LVLIFTLWNEKLDLLYEFSHVAVYS------LSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWL 223 (362)
Q Consensus 154 g~d~~~---~~yk-Vv~~~~~~~~~~~~~~~~~~~eVys------s~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl 223 (362)
+.+... -.|+ ++.+. ...++. .....+-|+. -..++|..++... ... ..-++.+|.+|-+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~--~~~----~DIi~~kGkfYAv 215 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVK-VKEGDN---HRDGVLGIGRDGKINYWDGNVLKALKQMG--YHF----SDIIVHKGQTYAL 215 (373)
T ss_pred ecccccccccceeEEEEEE-eecCCC---cceEEEEEeecCcEeeecCCeeeEccCCC--cee----eEEEEECCEEEEE
Confidence 111000 0131 11111 000110 0001122221 1247888886432 222 6779999999999
Q ss_pred eeccCCCccEEEEEEcCCceeeeecCC--CCC--CC--CCcEEEEECCeEEEEEEcC---------------CCCeEEEE
Q 045569 224 SEFRDNDHKVILSFHLGNEVFEEIQEP--YIP--ES--TPTILGIYNHSLCLLLSHN---------------IENYYDIW 282 (362)
Q Consensus 224 ~~~~~~~~~~il~fD~~~e~~~~i~~P--~~~--~~--~~~~l~~~~g~L~l~~~~~---------------~~~~~~IW 282 (362)
...+ .+.++|.+-+ .+.+..+ ... +. ....|++..|+|.+|.... ....++|+
T Consensus 216 D~~G-----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf 289 (373)
T PLN03215 216 DSIG-----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVY 289 (373)
T ss_pred cCCC-----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEE
Confidence 6544 5777774322 2222111 111 11 1167999999999988731 12468999
Q ss_pred EeeC--CeeEEEEEeCCCCCc---eeeEEE-------eeCCcEEEEecCCeEEEEeCCCCcEEEeeE--ee-ceEEEEEE
Q 045569 283 VMKY--KCWIKQLSLGPLNGV---RTPLGF-------WKKGAFFVHSTNEQLLLYDPNTQEMRDLGR--KS-FHFSVHIY 347 (362)
Q Consensus 283 ~l~~--~~W~~~~~i~~~~~~---~~~~~~-------~~~g~il~~~~~~~~~~yd~~~~~~~~v~~--~~-~~~~~~~y 347 (362)
.++. ..|+++.+++-...+ ...+++ .+.+.||+. .+....+||++.++...+.. .. ....+..|
T Consensus 290 klD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~ 368 (373)
T PLN03215 290 KFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESSQSSFEMF 368 (373)
T ss_pred EEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCccccchheee
Confidence 9987 899999988732111 111111 134567776 46778899999998766553 22 22234566
Q ss_pred Eecce
Q 045569 348 RESLI 352 (362)
Q Consensus 348 ~~SL~ 352 (362)
++|++
T Consensus 369 ~~~~~ 373 (373)
T PLN03215 369 VPSFL 373 (373)
T ss_pred ccccC
Confidence 66653
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.34 E-value=3.2e-10 Score=109.55 Aligned_cols=221 Identities=10% Similarity=0.048 Sum_probs=141.9
Q ss_pred CCCCCccceEeeeeeeeEEEe-ec------CceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEE
Q 045569 94 DLDNPVRGELVGPYNGIFCIF-GN------NNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVL 166 (362)
Q Consensus 94 ~~~~p~~~~~~~s~~GLl~~~-~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 166 (362)
.++.+.....++..+|-|.+. +. ...++.+||.+++|..+|+++.+.... ....++ =||..
T Consensus 289 ~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-------~~~~~~-----g~IYv 356 (557)
T PHA02713 289 TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-------SLAVID-----DTIYA 356 (557)
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-------eEEEEC-----CEEEE
Confidence 333333334455567766555 32 135789999999999999887543221 111222 25555
Q ss_pred EEEEeecccccccCcceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCC-----------------
Q 045569 167 IFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDN----------------- 229 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----------------- 229 (362)
++.. .+ ......+|+|+..+++|..++.++.+... ...+.++|.+|.+......
T Consensus 357 iGG~-~~----~~~~~sve~Ydp~~~~W~~~~~mp~~r~~----~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 357 IGGQ-NG----TNVERTIECYTMGDDKWKMLPDMPIALSS----YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCc-CC----CCCCceEEEEECCCCeEEECCCCCccccc----ccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 5421 11 11234699999999999998876543322 5678899999999764311
Q ss_pred --CccEEEEEEcCCceeeee-cCCCCCCCCCcEEEEECCeEEEEEEcCCC----CeEEEEEeeC-CeeEEEEEeCCCCCc
Q 045569 230 --DHKVILSFHLGNEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSHNIE----NYYDIWVMKY-KCWIKQLSLGPLNGV 301 (362)
Q Consensus 230 --~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~~~----~~~~IW~l~~-~~W~~~~~i~~~~~~ 301 (362)
....+.+||+.+++|+.+ ++|..... ..++..+|+|+++++.... ..++.+-.+. ..|+....++.. ..
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~--~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIR--PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-LS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccccc--CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-cc
Confidence 124699999999999987 44444322 4678999999999874311 2345555554 589998877642 22
Q ss_pred eeeEEEeeCCcEEEEecCC---eEEEEeCCCCcEEEeeEee
Q 045569 302 RTPLGFWKKGAFFVHSTNE---QLLLYDPNTQEMRDLGRKS 339 (362)
Q Consensus 302 ~~~~~~~~~g~il~~~~~~---~~~~yd~~~~~~~~v~~~~ 339 (362)
...+.+. +|+|++..+.. .+-.||++|++|..+.-++
T Consensus 505 ~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 505 ALHTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cceeEEE-CCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 2223333 68898886522 4889999999999887554
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.20 E-value=3.6e-09 Score=102.06 Aligned_cols=218 Identities=12% Similarity=0.127 Sum_probs=147.7
Q ss_pred CCCCCccceEeeeeeeeEEEe-ecC------ceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEE
Q 045569 94 DLDNPVRGELVGPYNGIFCIF-GNN------NRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVL 166 (362)
Q Consensus 94 ~~~~p~~~~~~~s~~GLl~~~-~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 166 (362)
.++.+....-++..+|.|... +.+ +.+..+||.+.+|..+|++...+.. +|.+. . ..++.+
T Consensus 318 ~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~--------~~v~~--l--~g~iYa 385 (571)
T KOG4441|consen 318 PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD--------FGVAV--L--DGKLYA 385 (571)
T ss_pred CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc--------ceeEE--E--CCEEEE
Confidence 344444456677788877766 222 3689999999999999998764332 22221 1 245555
Q ss_pred EEEEeecccccccCcceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCC--ccEEEEEEcCCcee
Q 045569 167 IFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDND--HKVILSFHLGNEVF 244 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~il~fD~~~e~~ 244 (362)
++... +......+|.|+..++.|..+..+..... ...++.++|.+|-+....... -..+.+||+.+++|
T Consensus 386 vGG~d-----g~~~l~svE~YDp~~~~W~~va~m~~~r~----~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 386 VGGFD-----GEKSLNSVECYDPVTNKWTPVAPMLTRRS----GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred Eeccc-----cccccccEEEecCCCCcccccCCCCccee----eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 54211 12223579999999999999987754222 267799999999998755322 36899999999999
Q ss_pred eee-cCCCCCCCCCcEEEEECCeEEEEEEcCC---CCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCcEEEEec--
Q 045569 245 EEI-QEPYIPESTPTILGIYNHSLCLLLSHNI---ENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST-- 318 (362)
Q Consensus 245 ~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~~---~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~-- 318 (362)
+.+ +++..... ..++.++|+|+++++.+. ...++..-.+...|..+..+..... ..-+..-++.+++..+
T Consensus 457 ~~~~~M~~~R~~--~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs--~~g~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 457 TLIAPMNTRRSG--FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS--AVGVVVLGGKLYAVGGFD 532 (571)
T ss_pred eecCCccccccc--ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc--cccEEEECCEEEEEeccc
Confidence 987 56665543 568999999999998653 2345555555588999865553211 1111223577777654
Q ss_pred ----CCeEEEEeCCCCcEEEee
Q 045569 319 ----NEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 319 ----~~~~~~yd~~~~~~~~v~ 336 (362)
-..+-.||+++++|....
T Consensus 533 ~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 533 GNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred CccccceeEEcCCCCCceeeCC
Confidence 245889999999999865
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.13 E-value=7.4e-09 Score=100.18 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=124.8
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCceecc
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCD 198 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~ 198 (362)
.+..+||.+++|..+++++.+.... .... ++ -+|..++.. ... ......++.|+..++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~-----~~a~--l~-----~~IYviGG~-~~~---~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY-----ASAI--VD-----NEIIIAGGY-NFN---NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce-----EEEE--EC-----CEEEEEcCC-CCC---CCccceEEEEECCCCeEeeCC
Confidence 3678899999999998876533211 0111 11 245555421 100 111346999999999999887
Q ss_pred cCCCccccccCCcceEEECceEEEEeeccCC-CccEEEEEEcCCceeeee-cCCCCCCCCCcEEEEECCeEEEEEEcCC-
Q 045569 199 CFKSNHYYMDGAFDSVYLDGVCYWLSEFRDN-DHKVILSFHLGNEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSHNI- 275 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~~- 275 (362)
.++.+... ...+.++|++|-+.+.... ....+.+||+.+++|..+ ++|..... ...+.++|+|+++++...
T Consensus 337 ~m~~~R~~----~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~--~~~~~~~g~IYviGG~~~~ 410 (557)
T PHA02713 337 PMIKNRCR----FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS--YGMCVLDQYIYIIGGRTEH 410 (557)
T ss_pred CCcchhhc----eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc--ccEEEECCEEEEEeCCCcc
Confidence 76533322 5678999999999875421 234699999999999987 45554433 456788999999987431
Q ss_pred --------------------CCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCcEEEEecC-------CeEEEEeCC
Q 045569 276 --------------------ENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTN-------EQLLLYDPN 328 (362)
Q Consensus 276 --------------------~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~-------~~~~~yd~~ 328 (362)
...++.+-.+...|+.+..+.... ....++ .-+|+||+..+. ..+..||++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcEE-EECCEEEEEeCCCCCCccceeEEEecCC
Confidence 123444444448899877655321 122233 336889887642 236799999
Q ss_pred C-CcEEEee
Q 045569 329 T-QEMRDLG 336 (362)
Q Consensus 329 ~-~~~~~v~ 336 (362)
+ ++|..+.
T Consensus 489 ~~~~W~~~~ 497 (557)
T PHA02713 489 TYNGWELIT 497 (557)
T ss_pred CCCCeeEcc
Confidence 9 8999776
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.12 E-value=1.6e-08 Score=98.11 Aligned_cols=193 Identities=12% Similarity=0.122 Sum_probs=124.1
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCceecc
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCD 198 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~ 198 (362)
.++.+||.|++|..+|+++.+.... .....+ =++..++.. .. ......+++|+..+++|+..+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~-------~~~~~~-----~~lyv~GG~-~~----~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNP-------GVTVFN-----NRIYVIGGI-YN----SISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccc-------eEEEEC-----CEEEEEeCC-CC----CEecceEEEEcCCCCceeeCC
Confidence 5889999999999999876533221 111122 134444321 11 112346899999999999887
Q ss_pred cCCCccccccCCcceEEECceEEEEeeccC--CCccEEEEEEcCCceeeee-cCCCCCCCCCcEEEEECCeEEEEEEcCC
Q 045569 199 CFKSNHYYMDGAFDSVYLDGVCYWLSEFRD--NDHKVILSFHLGNEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSHNI 275 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~~ 275 (362)
..+.+.. ....+.++|.+|-+..... .....+..||+.+++|+.+ ++|..... ...+..+|+|+++++...
T Consensus 375 ~lp~~r~----~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 375 PLIFPRY----NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIYHDGKIYVIGGISY 448 (534)
T ss_pred CcCcCCc----cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEEECCEEEEECCccC
Confidence 6543322 2566889999999976321 1235789999999999987 44543322 356778999999887431
Q ss_pred CC----eEEEEEeeC--CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec------CCeEEEEeCCCCcEEEee
Q 045569 276 EN----YYDIWVMKY--KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST------NEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 276 ~~----~~~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~------~~~~~~yd~~~~~~~~v~ 336 (362)
.. .-.+|..+. ..|++...++.. ......+.. +++|++..+ ...+..||+++++|..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 11 113666655 899987654422 122223333 678888764 246999999999998876
No 9
>PLN02153 epithiospecifier protein
Probab=99.11 E-value=4.7e-08 Score=89.28 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=125.0
Q ss_pred EeeeeeeeEEEe-ec-------CceEEEEeCCCcccccCCCCCc-CCCCcccceeeeeeeeecCCCCCeEEEEEEEEeec
Q 045569 103 LVGPYNGIFCIF-GN-------NNRITLWNRATKESRVLPKCTT-VFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNE 173 (362)
Q Consensus 103 ~~~s~~GLl~~~-~~-------~~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~ 173 (362)
-++..++-|.+. +. ...++++||.+++|..+|+... +.... .......+ + =|++.++.. ..
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~--~~~~~~~~--~-----~~iyv~GG~-~~ 96 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISC--LGVRMVAV--G-----TKLYIFGGR-DE 96 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCcc--CceEEEEE--C-----CEEEEECCC-CC
Confidence 344455655554 21 1358999999999999886532 11110 00011111 1 145444311 11
Q ss_pred ccccccCcceEEEEECCCCCceecccCCC-ccccccCCcceEEECceEEEEeeccCC-------CccEEEEEEcCCceee
Q 045569 174 KLDLLYEFSHVAVYSLSTNSWRYCDCFKS-NHYYMDGAFDSVYLDGVCYWLSEFRDN-------DHKVILSFHLGNEVFE 245 (362)
Q Consensus 174 ~~~~~~~~~~~eVyss~~~~W~~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fD~~~e~~~ 245 (362)
. .....+++|+..++.|+.++.... ..+.-......+..+|++|.+...... ....+.+||+.+.+|.
T Consensus 97 ~----~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 97 K----REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred C----CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 1 112469999999999998765411 001111125568899999998764311 1135889999999999
Q ss_pred eecCCCCC-CCCC-cEEEEECCeEEEEEEcCC---------CCeEEEEEee--CCeeEEEEEeCC--CCCceeeEEEeeC
Q 045569 246 EIQEPYIP-ESTP-TILGIYNHSLCLLLSHNI---------ENYYDIWVMK--YKCWIKQLSLGP--LNGVRTPLGFWKK 310 (362)
Q Consensus 246 ~i~~P~~~-~~~~-~~l~~~~g~L~l~~~~~~---------~~~~~IW~l~--~~~W~~~~~i~~--~~~~~~~~~~~~~ 310 (362)
.++.+... .... ..++..+|+|+++..... ...-++++++ ..+|+++..... .........+ -+
T Consensus 173 ~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~ 251 (341)
T PLN02153 173 QLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VG 251 (341)
T ss_pred eCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-EC
Confidence 87643211 1111 456788999999875310 0012355554 488999875432 1111222222 35
Q ss_pred CcEEEEecC---------------CeEEEEeCCCCcEEEee
Q 045569 311 GAFFVHSTN---------------EQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 311 g~il~~~~~---------------~~~~~yd~~~~~~~~v~ 336 (362)
++|++..+. +.++.||+++++|..+.
T Consensus 252 ~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 252 KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 677776542 26899999999999885
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.09 E-value=2.8e-08 Score=94.76 Aligned_cols=183 Identities=9% Similarity=0.045 Sum_probs=121.9
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCceecc
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCD 198 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~ 198 (362)
....+||.+++|..+|+++.+.... .+...+ -+|..++.. . . ...+|.|+..+++|..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~-------~~v~~~-----~~iYviGG~-~-~------~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYA-------SGVPAN-----NKLYVVGGL-P-N------PTSVERWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcc-------eEEEEC-----CEEEEECCc-C-C------CCceEEEECCCCeEEECC
Confidence 4678899999999999886543221 111222 245555421 1 1 135899999999999987
Q ss_pred cCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeeeec-CCCCCCCCCcEEEEECCeEEEEEEcCCCC
Q 045569 199 CFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQ-EPYIPESTPTILGIYNHSLCLLLSHNIEN 277 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~l~~~~~~~~ 277 (362)
.++.+... ..++.++|.+|.+..... ....+.+||+.+++|+.++ +|..... ...+..+|+|++++.
T Consensus 348 ~l~~~r~~----~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~GG----- 415 (480)
T PHA02790 348 SLLKPRCN----PAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVGR----- 415 (480)
T ss_pred CCCCCCcc----cEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEECC-----
Confidence 76533322 567899999999987542 1346889999999999874 3333222 456789999999875
Q ss_pred eEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCcEEEEecC------CeEEEEeCCCCcEEEe
Q 045569 278 YYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTN------EQLLLYDPNTQEMRDL 335 (362)
Q Consensus 278 ~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~------~~~~~yd~~~~~~~~v 335 (362)
..+++-.+...|+....++... .....++ -+|+|++..+. ..+-.||+++++|...
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r-~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPR-DNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCc-cccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 2455555558999877654322 2222333 36889887641 3588999999999754
No 11
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.04 E-value=1e-10 Score=73.31 Aligned_cols=42 Identities=26% Similarity=0.556 Sum_probs=36.6
Q ss_pred CCcchHHHHHHHHccCCccccccccccccchhhhhCChHHHH
Q 045569 6 DEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFIS 47 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 47 (362)
|+.||+|++.+||..||++++.++.+|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875544
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.02 E-value=2.4e-08 Score=96.40 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=135.4
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCceecc
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCD 198 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~ 198 (362)
.+..+||.+++|..+.+++.+... .+.+.-. -+|..++.... +......++.|++.+++|..++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~--------~~~~~~~----~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCR--------VGVAVLN----GKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eeEEecCCcCcEeecCCCCccccc--------ccEEEEC----CEEEEEccccC----CCcccceEEEecCCCCceeccC
Confidence 577889999999999888764332 2222221 15555542111 1223467999999999999988
Q ss_pred cCCCccccccCCcceEEECceEEEEeeccCC-CccEEEEEEcCCceeeeec-CCCCCCCCCcEEEEECCeEEEEEEcCCC
Q 045569 199 CFKSNHYYMDGAFDSVYLDGVCYWLSEFRDN-DHKVILSFHLGNEVFEEIQ-EPYIPESTPTILGIYNHSLCLLLSHNIE 276 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~l~~~~~~~ 276 (362)
.+...... ...+.++|.+|-+....+. .-..+..||+.+++|..+. ++..... ...++.+|+|+++++.+..
T Consensus 366 ~M~~~R~~----~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~--~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 366 PMNTKRSD----FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSG--HGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred CccCcccc----ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceee--eEEEEECCEEEEEcCcCCC
Confidence 77553332 6779999999999976632 2457999999999999874 6653322 5788999999999985422
Q ss_pred ----CeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCcEEEEecC------CeEEEEeCCCCcEEEee
Q 045569 277 ----NYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTN------EQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 277 ----~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~------~~~~~yd~~~~~~~~v~ 336 (362)
..++.+-.....|.....+..... ...+++. ++.||...+. ..+-.||+++++|..+.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccc-cceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 455666555589999888875422 2234443 6788887652 23889999999999886
No 13
>PLN02193 nitrile-specifier protein
Probab=99.00 E-value=2.3e-07 Score=88.29 Aligned_cols=201 Identities=9% Similarity=0.078 Sum_probs=121.3
Q ss_pred eEEEEeCCCcccccCCCCC-cCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCceec
Q 045569 119 RITLWNRATKESRVLPKCT-TVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYC 197 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~ 197 (362)
.++++||.+++|..+|+.. .+.... .......++ =++..+.. ... ......+++|++.+++|+.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~----~~~~~v~~~-----~~lYvfGG-~~~----~~~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSC----LGVRMVSIG-----STLYVFGG-RDA----SRQYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcc----cceEEEEEC-----CEEEEECC-CCC----CCCCccEEEEECCCCEEEEc
Confidence 5889999999999887542 111110 001111222 13444431 111 11134699999999999998
Q ss_pred ccCCC-ccccccCCcceEEECceEEEEeeccC-CCccEEEEEEcCCceeeeecCCCCCCC-C-CcEEEEECCeEEEEEEc
Q 045569 198 DCFKS-NHYYMDGAFDSVYLDGVCYWLSEFRD-NDHKVILSFHLGNEVFEEIQEPYIPES-T-PTILGIYNHSLCLLLSH 273 (362)
Q Consensus 198 ~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~~P~~~~~-~-~~~l~~~~g~L~l~~~~ 273 (362)
..... +.+. .....+.+++.+|.+..... .....+.+||+.+.+|..++.|..... . ...++..+|+++++...
T Consensus 260 ~~~~~~P~~R--~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~ 337 (470)
T PLN02193 260 TPVEEGPTPR--SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGF 337 (470)
T ss_pred CcCCCCCCCc--cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECC
Confidence 65421 1111 12556778999999876432 123468899999999998865432211 1 14567789999998874
Q ss_pred CCCCeEEEEEeeC--CeeEEEEEeCC--CCCceeeEEEeeCCcEEEEecC---------------CeEEEEeCCCCcEEE
Q 045569 274 NIENYYDIWVMKY--KCWIKQLSLGP--LNGVRTPLGFWKKGAFFVHSTN---------------EQLLLYDPNTQEMRD 334 (362)
Q Consensus 274 ~~~~~~~IW~l~~--~~W~~~~~i~~--~~~~~~~~~~~~~g~il~~~~~---------------~~~~~yd~~~~~~~~ 334 (362)
.....-++|+++- .+|++...+.. .+....... .-+++|++..+. ..+..||+++++|+.
T Consensus 338 ~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 338 NGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWER 416 (470)
T ss_pred CCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEE
Confidence 3222345666665 88999876532 122222222 335778776541 248999999999998
Q ss_pred ee
Q 045569 335 LG 336 (362)
Q Consensus 335 v~ 336 (362)
+.
T Consensus 417 ~~ 418 (470)
T PLN02193 417 LD 418 (470)
T ss_pred cc
Confidence 86
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.95 E-value=4.3e-07 Score=83.19 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=125.3
Q ss_pred eeeeeeeEEEe-e-cCceEEEEeC--CCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeeccc-ccc
Q 045569 104 VGPYNGIFCIF-G-NNNRITLWNR--ATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKL-DLL 178 (362)
Q Consensus 104 ~~s~~GLl~~~-~-~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~~~ 178 (362)
.+..++-|.+. + ....+++.++ .+++|..+|+++...... ......+ =+|..++....... ...
T Consensus 13 ~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~------~~~~~~~-----~~iYv~GG~~~~~~~~~~ 81 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQ------AVAAAID-----GKLYVFGGIGKANSEGSP 81 (346)
T ss_pred EEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCccc------ceEEEEC-----CEEEEEeCCCCCCCCCcc
Confidence 43555666554 2 2245777774 678899999876311111 1111122 14555542110000 000
Q ss_pred cCcceEEEEECCCCCceecccCCCccccccCCcceE-EECceEEEEeeccCC----------------------------
Q 045569 179 YEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSV-YLDGVCYWLSEFRDN---------------------------- 229 (362)
Q Consensus 179 ~~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~---------------------------- 229 (362)
.....++.|+..+++|+.+.... +... . ...++ .++|+||-+......
T Consensus 82 ~~~~~v~~Yd~~~~~W~~~~~~~-p~~~-~-~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 82 QVFDDVYRYDPKKNSWQKLDTRS-PVGL-L-GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred eecccEEEEECCCCEEecCCCCC-CCcc-c-ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 01246999999999999986321 1221 0 12233 689999998754210
Q ss_pred -------CccEEEEEEcCCceeeee-cCCCCCCCCCcEEEEECCeEEEEEEcCC--CCeEEEEEee--C--CeeEEEEEe
Q 045569 230 -------DHKVILSFHLGNEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSHNI--ENYYDIWVMK--Y--KCWIKQLSL 295 (362)
Q Consensus 230 -------~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~~--~~~~~IW~l~--~--~~W~~~~~i 295 (362)
....+.+||+.+++|+.+ ++|...... ..++..+|+|++++.... ....++|..+ . ..|.+...+
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG-SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECccCCCCcCCC-ceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 014699999999999987 455322111 467788999999987531 2334566554 2 589988776
Q ss_pred CCCCC-----ceeeEEEeeCCcEEEEecC-----------------------CeEEEEeCCCCcEEEee
Q 045569 296 GPLNG-----VRTPLGFWKKGAFFVHSTN-----------------------EQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 296 ~~~~~-----~~~~~~~~~~g~il~~~~~-----------------------~~~~~yd~~~~~~~~v~ 336 (362)
+.... ......+.-+|+|++..+. ..+-+||+++++|+.+.
T Consensus 238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 238 PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 53211 0111122346788887542 14679999999998775
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.92 E-value=3.5e-07 Score=82.94 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=98.0
Q ss_pred ceEEEEECCCCCc----eecccCCCccccccCCcceEEECceEEEEeecc-CCCccEEEEEEcCCceeeeec-CCCCCCC
Q 045569 182 SHVAVYSLSTNSW----RYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFR-DNDHKVILSFHLGNEVFEEIQ-EPYIPES 255 (362)
Q Consensus 182 ~~~eVyss~~~~W----~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~il~fD~~~e~~~~i~-~P~~~~~ 255 (362)
..++.|+..++.| +.++..+.+.. ...++.++|++|.+.... ......+.+||+.+++|+.++ +|.....
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~----~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~ 163 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFE----NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRV 163 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCcc----CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCC
Confidence 4689999999988 44444332221 256788999999997642 112357999999999999884 6643222
Q ss_pred CCcEEEEECCeEEEEEEcCCCCeEEEEEeeC--CeeEEEEEeCCC--C--CceeeEEEeeCCcEEEEecC----------
Q 045569 256 TPTILGIYNHSLCLLLSHNIENYYDIWVMKY--KCWIKQLSLGPL--N--GVRTPLGFWKKGAFFVHSTN---------- 319 (362)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~--~~W~~~~~i~~~--~--~~~~~~~~~~~g~il~~~~~---------- 319 (362)
. ...+..+|+|++++........++|+.+- ..|++...+... + ..........+++|++..+.
T Consensus 164 ~-~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 242 (323)
T TIGR03548 164 Q-PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVI 242 (323)
T ss_pred c-ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHh
Confidence 1 45678899999998754333345666664 889887654211 1 01112223345778776531
Q ss_pred ----------------------------CeEEEEeCCCCcEEEee
Q 045569 320 ----------------------------EQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 320 ----------------------------~~~~~yd~~~~~~~~v~ 336 (362)
+.+..||+++++|..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 243 DLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 35999999999999876
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.91 E-value=3.8e-10 Score=71.22 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=38.4
Q ss_pred CCcchHHHHHHHHccCCccccccccccccchhhhhCChHHHHHHh
Q 045569 6 DEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHL 50 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~ 50 (362)
+..||+|++.+||.+||.+++++++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 467999999999999999999999999999999999998877654
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.88 E-value=5.9e-07 Score=83.14 Aligned_cols=230 Identities=17% Similarity=0.149 Sum_probs=130.1
Q ss_pred ccCCCCCccceEeeeeeeeEEEe--ecCceEEEEeCC--CcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEE
Q 045569 92 LQDLDNPVRGELVGPYNGIFCIF--GNNNRITLWNRA--TKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLI 167 (362)
Q Consensus 92 ~~~~~~p~~~~~~~s~~GLl~~~--~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~ 167 (362)
+++++.|......+..++-|.+. .....+++.++. +++|..+|+.+...... ......+ + ++..+
T Consensus 22 l~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~------~~~v~~~---~--~IYV~ 90 (376)
T PRK14131 22 LPDLPVPFKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ------AVAAFID---G--KLYVF 90 (376)
T ss_pred CCCCCcCccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc------ceEEEEC---C--EEEEE
Confidence 34444444333455567766664 223447777765 57899998765321111 1111111 2 33333
Q ss_pred EEEeeccccc-ccCcceEEEEECCCCCceecccCCCccccccCCcceEE-ECceEEEEeeccCC----------------
Q 045569 168 FTLWNEKLDL-LYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVY-LDGVCYWLSEFRDN---------------- 229 (362)
Q Consensus 168 ~~~~~~~~~~-~~~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~---------------- 229 (362)
+......... ......+++|+..+++|+.+.... +... . ...++. .+|.||.+......
T Consensus 91 GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~-p~~~-~-~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~ 167 (376)
T PRK14131 91 GGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS-PVGL-A-GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK 167 (376)
T ss_pred cCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC-CCcc-c-ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence 3111000000 011246999999999999987421 1221 1 123344 79999999764210
Q ss_pred -------------------CccEEEEEEcCCceeeee-cCCCCCCCCCcEEEEECCeEEEEEEcC--CCCeEEEEEee--
Q 045569 230 -------------------DHKVILSFHLGNEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSHN--IENYYDIWVMK-- 285 (362)
Q Consensus 230 -------------------~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~--~~~~~~IW~l~-- 285 (362)
....+.+||+.+++|..+ ++|...... ..++..+++|++++... .....++|..+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~-~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~ 246 (376)
T PRK14131 168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG-SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFT 246 (376)
T ss_pred hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc-ceEEEECCEEEEEeeeECCCcCChhheEEEec
Confidence 024699999999999987 455422211 45677899999998742 23456677554
Q ss_pred C--CeeEEEEEeCCCCC------ceeeEEEeeCCcEEEEecCC-----------------------eEEEEeCCCCcEEE
Q 045569 286 Y--KCWIKQLSLGPLNG------VRTPLGFWKKGAFFVHSTNE-----------------------QLLLYDPNTQEMRD 334 (362)
Q Consensus 286 ~--~~W~~~~~i~~~~~------~~~~~~~~~~g~il~~~~~~-----------------------~~~~yd~~~~~~~~ 334 (362)
. ..|.++..++.... ........-+++|++..+.. .+-.||+++++|+.
T Consensus 247 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 326 (376)
T PRK14131 247 GNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK 326 (376)
T ss_pred CCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence 2 78998887754221 11111223467888775411 24579999999987
Q ss_pred ee
Q 045569 335 LG 336 (362)
Q Consensus 335 v~ 336 (362)
+.
T Consensus 327 ~~ 328 (376)
T PRK14131 327 VG 328 (376)
T ss_pred cC
Confidence 66
No 18
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.79 E-value=1.7e-09 Score=65.75 Aligned_cols=39 Identities=44% Similarity=0.763 Sum_probs=36.7
Q ss_pred chHHHHHHHHccCCccccccccccccchhhhhCChHHHH
Q 045569 9 FLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFIS 47 (362)
Q Consensus 9 LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 47 (362)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887754
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=98.77 E-value=6.3e-07 Score=85.52 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=107.5
Q ss_pred CCCCCccceEeeeeeeeEEEe-e--cCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEE
Q 045569 94 DLDNPVRGELVGPYNGIFCIF-G--NNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTL 170 (362)
Q Consensus 94 ~~~~p~~~~~~~s~~GLl~~~-~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~ 170 (362)
.++.|......+..+|-|.+. + ....+..++|.+++|..+|+++.+.... .+..++ =+|..++..
T Consensus 304 ~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-------~~~~~~-----g~IYviGG~ 371 (480)
T PHA02790 304 PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-------AVASIN-----NVIYVIGGH 371 (480)
T ss_pred CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-------EEEEEC-----CEEEEecCc
Confidence 333343344455678887666 3 2235778899999999999887643321 222222 245555421
Q ss_pred eecccccccCcceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeeeec-C
Q 045569 171 WNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQ-E 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~-~ 249 (362)
... ...+|+|+.+++.|..++.++.+... ...+.++|.+|.+.. ...+||+++++|+.++ +
T Consensus 372 -~~~------~~~ve~ydp~~~~W~~~~~m~~~r~~----~~~~~~~~~IYv~GG-------~~e~ydp~~~~W~~~~~m 433 (480)
T PHA02790 372 -SET------DTTTEYLLPNHDQWQFGPSTYYPHYK----SCALVFGRRLFLVGR-------NAEFYCESSNTWTLIDDP 433 (480)
T ss_pred -CCC------CccEEEEeCCCCEEEeCCCCCCcccc----ceEEEECCEEEEECC-------ceEEecCCCCcEeEcCCC
Confidence 111 23589999999999998766533322 566789999999863 2678999999999874 4
Q ss_pred CCCCCCCCcEEEEECCeEEEEEEcCC---CCeEEEEEeeCCeeEE
Q 045569 250 PYIPESTPTILGIYNHSLCLLLSHNI---ENYYDIWVMKYKCWIK 291 (362)
Q Consensus 250 P~~~~~~~~~l~~~~g~L~l~~~~~~---~~~~~IW~l~~~~W~~ 291 (362)
|..... ..++..+|+|+++++... ...++++-.+...|+.
T Consensus 434 ~~~r~~--~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 434 IYPRDN--PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred CCCccc--cEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 433222 568899999999997531 2345555555577854
No 20
>PHA03098 kelch-like protein; Provisional
Probab=98.70 E-value=3e-06 Score=82.32 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=112.2
Q ss_pred cCCCCCccceEeeeeeeeEEEe-ec-----CceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEE
Q 045569 93 QDLDNPVRGELVGPYNGIFCIF-GN-----NNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVL 166 (362)
Q Consensus 93 ~~~~~p~~~~~~~s~~GLl~~~-~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 166 (362)
+.++.|....-.++.+|-|.+. +. ...+.++||.|++|..+|+.+.+.... .+..++ + ++..
T Consensus 327 ~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-------~~~~~~---~--~iYv 394 (534)
T PHA03098 327 PELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-------CVVNVN---N--LIYV 394 (534)
T ss_pred CCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-------eEEEEC---C--EEEE
Confidence 3344344344455667766555 22 235789999999999998876643221 111222 1 4444
Q ss_pred EEEEeecccccccCcceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCC----ccEEEEEEcCCc
Q 045569 167 IFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDND----HKVILSFHLGNE 242 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~il~fD~~~e 242 (362)
++...... .....+++|+..+++|+.++..+.+.. ...++.++|.+|.+....... ...+.+||+.++
T Consensus 395 ~GG~~~~~----~~~~~v~~yd~~t~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 395 IGGISKND----ELLKTVECFSLNTNKWSKGSPLPISHY----GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred ECCcCCCC----cccceEEEEeCCCCeeeecCCCCcccc----CceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 43211111 113469999999999999876543222 256788999999987543111 234999999999
Q ss_pred eeeeec-CCCCCCCCCcEEEEECCeEEEEEEcCCCC-eEEEEEeeC--CeeEEEEEeCC
Q 045569 243 VFEEIQ-EPYIPESTPTILGIYNHSLCLLLSHNIEN-YYDIWVMKY--KCWIKQLSLGP 297 (362)
Q Consensus 243 ~~~~i~-~P~~~~~~~~~l~~~~g~L~l~~~~~~~~-~~~IW~l~~--~~W~~~~~i~~ 297 (362)
+|+.++ +|..... ..++..+|+|+++++..... .-.||..+. ..|......++
T Consensus 467 ~W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 467 KWTELSSLNFPRIN--ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred ceeeCCCCCccccc--ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 999874 4432222 45677899999988753211 224555554 88988876553
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.64 E-value=1e-05 Score=73.37 Aligned_cols=180 Identities=11% Similarity=0.007 Sum_probs=104.5
Q ss_pred ceEEEEeCCCccc----ccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCC
Q 045569 118 NRITLWNRATKES----RVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNS 193 (362)
Q Consensus 118 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~ 193 (362)
..++.+|+.+++| ..+|+.+.+.... .+..++ =||..++... .. .....+++|+..++.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-------~~~~~~-----~~iYv~GG~~-~~----~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENG-------SACYKD-----GTLYVGGGNR-NG----KPSNKSYLFNLETQE 150 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCc-------eEEEEC-----CEEEEEeCcC-CC----ccCceEEEEcCCCCC
Confidence 4688899999987 6777766543221 111222 1455444211 11 113469999999999
Q ss_pred ceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecC-CCC--CCC--CCcEEEEECCeEE
Q 045569 194 WRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQE-PYI--PES--TPTILGIYNHSLC 268 (362)
Q Consensus 194 W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~-P~~--~~~--~~~~l~~~~g~L~ 268 (362)
|..++..+... . .....+.++|.+|.+..........+.+||+.+++|+.++. +.. ... ....++..+|+|+
T Consensus 151 W~~~~~~p~~~-r--~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 151 WFELPDFPGEP-R--VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred eeECCCCCCCC-C--CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 99987544211 1 12445789999999976532222347899999999998743 211 100 1123445578999
Q ss_pred EEEEcCC-----------------------------------CCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCcE
Q 045569 269 LLLSHNI-----------------------------------ENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAF 313 (362)
Q Consensus 269 l~~~~~~-----------------------------------~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (362)
+++.... ...++++-.+...|+..-.++........+... +++|
T Consensus 228 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~-~~~i 306 (323)
T TIGR03548 228 CIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLT-GNNI 306 (323)
T ss_pred EECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEE-CCEE
Confidence 8887431 123444444448899887654222222333333 5678
Q ss_pred EEEec
Q 045569 314 FVHST 318 (362)
Q Consensus 314 l~~~~ 318 (362)
++..+
T Consensus 307 yv~GG 311 (323)
T TIGR03548 307 FSING 311 (323)
T ss_pred EEEec
Confidence 77754
No 22
>PLN02153 epithiospecifier protein
Probab=98.62 E-value=6.5e-06 Score=75.22 Aligned_cols=152 Identities=9% Similarity=0.148 Sum_probs=95.1
Q ss_pred ceEEEEECCCCCceecccCCCccccc-cCCcceEEECceEEEEeeccCC-CccEEEEEEcCCceeeeec-C-----CCCC
Q 045569 182 SHVAVYSLSTNSWRYCDCFKSNHYYM-DGAFDSVYLDGVCYWLSEFRDN-DHKVILSFHLGNEVFEEIQ-E-----PYIP 253 (362)
Q Consensus 182 ~~~eVyss~~~~W~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~e~~~~i~-~-----P~~~ 253 (362)
..+++|+..++.|..+..... .+.. ......+.++|+||.+...... ....+.+||+.+.+|+.++ + |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~-~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGD-VPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCC-CCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 469999999999998765321 1111 1114568889999999764321 1236899999999999874 3 2222
Q ss_pred CCCCcEEEEECCeEEEEEEcCCCC-------eEEEEEeeC--CeeEEEEEeCC--CCCceeeEEEeeCCcEEEEec----
Q 045569 254 ESTPTILGIYNHSLCLLLSHNIEN-------YYDIWVMKY--KCWIKQLSLGP--LNGVRTPLGFWKKGAFFVHST---- 318 (362)
Q Consensus 254 ~~~~~~l~~~~g~L~l~~~~~~~~-------~~~IW~l~~--~~W~~~~~i~~--~~~~~~~~~~~~~g~il~~~~---- 318 (362)
.. ...+..+++|++++...... .-++|+.+- ..|..+..... .......+.. -+++|++..+
T Consensus 129 ~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 TF--HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred ee--eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 11 45678899999988753110 114555554 88997654321 1111122333 3567776532
Q ss_pred ----------CCeEEEEeCCCCcEEEeeE
Q 045569 319 ----------NEQLLLYDPNTQEMRDLGR 337 (362)
Q Consensus 319 ----------~~~~~~yd~~~~~~~~v~~ 337 (362)
...+..||+++++|+++..
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccc
Confidence 2468999999999998863
No 23
>PLN02193 nitrile-specifier protein
Probab=98.53 E-value=2.6e-05 Score=74.26 Aligned_cols=152 Identities=13% Similarity=0.141 Sum_probs=95.0
Q ss_pred ceEEEEECCCCCceecccCCCccccc-cCCcceEEECceEEEEeeccCC-CccEEEEEEcCCceeeeec-C---CCCCCC
Q 045569 182 SHVAVYSLSTNSWRYCDCFKSNHYYM-DGAFDSVYLDGVCYWLSEFRDN-DHKVILSFHLGNEVFEEIQ-E---PYIPES 255 (362)
Q Consensus 182 ~~~eVyss~~~~W~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~e~~~~i~-~---P~~~~~ 255 (362)
..+++|+.++++|..++.... .|.. ......+.+++.||.+...... ....+.+||+.+.+|+.+. + |.....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~-~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGD-VPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCC-CCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence 359999999999997654211 1110 1124567899999998764321 1246889999999999874 3 222211
Q ss_pred CCcEEEEECCeEEEEEEcCCC-CeEEEEEee--CCeeEEEEEeCC--CCCceeeEEEeeCCcEEEEec-----CCeEEEE
Q 045569 256 TPTILGIYNHSLCLLLSHNIE-NYYDIWVMK--YKCWIKQLSLGP--LNGVRTPLGFWKKGAFFVHST-----NEQLLLY 325 (362)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~-~~~~IW~l~--~~~W~~~~~i~~--~~~~~~~~~~~~~g~il~~~~-----~~~~~~y 325 (362)
..++..+++|++++..... ..-++|+.+ ..+|........ .......+... +++|++... ...+..|
T Consensus 272 --h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 272 --HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred --eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEE
Confidence 4566789999999875321 122445554 488987643211 11112223333 577877653 2569999
Q ss_pred eCCCCcEEEeeE
Q 045569 326 DPNTQEMRDLGR 337 (362)
Q Consensus 326 d~~~~~~~~v~~ 337 (362)
|+++++|..+..
T Consensus 349 D~~t~~W~~~~~ 360 (470)
T PLN02193 349 DPVQDKWTQVET 360 (470)
T ss_pred ECCCCEEEEecc
Confidence 999999998863
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.52 E-value=3.3e-05 Score=71.52 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=92.9
Q ss_pred ceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccC----CCccEEEEEEcCCceeeee-cCCCCCCCC
Q 045569 182 SHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRD----NDHKVILSFHLGNEVFEEI-QEPYIPEST 256 (362)
Q Consensus 182 ~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~~il~fD~~~e~~~~i-~~P~~~~~~ 256 (362)
..+++|+..++.|..++..+..... ....+.++|+||.+..... ........||+++.+|..+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTA---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCC---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 4699999999999998765421111 1456788999999986421 1123455678889999876 466543211
Q ss_pred ----C--cEEEEECCeEEEEEEcCCC--------------------CeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeC
Q 045569 257 ----P--TILGIYNHSLCLLLSHNIE--------------------NYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKK 310 (362)
Q Consensus 257 ----~--~~l~~~~g~L~l~~~~~~~--------------------~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 310 (362)
. ...+..+|+|++++..... ..++++..+...|++...++... ... .++.-+
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r-~~~-~av~~~ 343 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL-AYG-VSVSWN 343 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc-cce-EEEEeC
Confidence 1 1246789999998874210 13456666668899876655321 122 233346
Q ss_pred CcEEEEecC-------CeEEEEeCCCCcEEE
Q 045569 311 GAFFVHSTN-------EQLLLYDPNTQEMRD 334 (362)
Q Consensus 311 g~il~~~~~-------~~~~~yd~~~~~~~~ 334 (362)
++|++..+. ..+..|+++++++..
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 788887641 257788888776643
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.24 E-value=0.00017 Score=66.01 Aligned_cols=149 Identities=9% Similarity=0.072 Sum_probs=90.8
Q ss_pred eEEEEEC--CCCCceecccCCC-ccccccCCcceEEECceEEEEeeccCC-------CccEEEEEEcCCceeeeecCCCC
Q 045569 183 HVAVYSL--STNSWRYCDCFKS-NHYYMDGAFDSVYLDGVCYWLSEFRDN-------DHKVILSFHLGNEVFEEIQEPYI 252 (362)
Q Consensus 183 ~~eVyss--~~~~W~~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fD~~~e~~~~i~~P~~ 252 (362)
.+.+|++ .++.|+.+..++. ... ....+.++|.||.+...... ....+.+||+.+++|+.++.|..
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~~R~----~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p 105 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGGPRN----QAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSP 105 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCCCcc----cceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCC
Confidence 5788887 4678999877642 221 25678999999999865311 12468899999999998863322
Q ss_pred CCCCCc-EEEEECCeEEEEEEcCCC-----------------------------------CeEEEEEeeC--CeeEEEEE
Q 045569 253 PESTPT-ILGIYNHSLCLLLSHNIE-----------------------------------NYYDIWVMKY--KCWIKQLS 294 (362)
Q Consensus 253 ~~~~~~-~l~~~~g~L~l~~~~~~~-----------------------------------~~~~IW~l~~--~~W~~~~~ 294 (362)
...... .++..+|+|++++..... ..=.+|+.+- ..|+....
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~ 185 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE 185 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc
Confidence 211112 233689999999874211 0013555554 88999876
Q ss_pred eCCCCCceeeEEEeeCCcEEEEecC-------CeEEEEe--CCCCcEEEee
Q 045569 295 LGPLNGVRTPLGFWKKGAFFVHSTN-------EQLLLYD--PNTQEMRDLG 336 (362)
Q Consensus 295 i~~~~~~~~~~~~~~~g~il~~~~~-------~~~~~yd--~~~~~~~~v~ 336 (362)
++........+ +.-+++|++..+. ..+..|| +++++|.++.
T Consensus 186 ~p~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 186 NPFLGTAGSAI-VHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP 235 (346)
T ss_pred CCCCcCCCceE-EEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC
Confidence 65322222223 2346788887541 1244454 5677887665
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.16 E-value=0.00012 Score=65.48 Aligned_cols=210 Identities=10% Similarity=0.099 Sum_probs=122.8
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecc-cccccCcceEEEEECCCCCceec
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEK-LDLLYEFSHVAVYSLSTNSWRYC 197 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~-~~~~~~~~~~eVyss~~~~W~~~ 197 (362)
.+|++|--+.+|+.+-.+..+.++. .......|+. +-.+ ++..+.+. ++.-.....+.+|++.++.|..+
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRs------shq~va~~s~--~l~~-fGGEfaSPnq~qF~HYkD~W~fd~~trkweql 169 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRS------SHQAVAVPSN--ILWL-FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQL 169 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCc------cceeEEeccC--eEEE-eccccCCcchhhhhhhhheeeeeeccchheee
Confidence 4899999999999875443333332 2222333332 2111 22222222 12222335689999999999988
Q ss_pred ccCCCccccccCCcceEEECceEEEEeeccCCC-----ccEEEEEEcCCceeeeecCCCCCCC-CC-cEEEEE-CCeEEE
Q 045569 198 DCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDND-----HKVILSFHLGNEVFEEIQEPYIPES-TP-TILGIY-NHSLCL 269 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~il~fD~~~e~~~~i~~P~~~~~-~~-~~l~~~-~g~L~l 269 (362)
...-.+-+.. ..+.|.....+.-....+... -.-+.+||+++=+|+.+..+..... .. .++.+. .|.+.|
T Consensus 170 ~~~g~PS~RS--GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~v 247 (521)
T KOG1230|consen 170 EFGGGPSPRS--GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVV 247 (521)
T ss_pred ccCCCCCCCc--cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEE
Confidence 6542222211 133444444433333221110 1258999999999999865442111 11 456555 888888
Q ss_pred EEEcC----------CCCeEEEEEeeC-------CeeEEEEEeCCC--CCceeeEEEeeCCcEEEEec------------
Q 045569 270 LLSHN----------IENYYDIWVMKY-------KCWIKQLSLGPL--NGVRTPLGFWKKGAFFVHST------------ 318 (362)
Q Consensus 270 ~~~~~----------~~~~~~IW~l~~-------~~W~~~~~i~~~--~~~~~~~~~~~~g~il~~~~------------ 318 (362)
.+... ...+-++|.|+. ..|.++..+... +.....++++++++-++..+
T Consensus 248 yGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~ 327 (521)
T KOG1230|consen 248 YGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLS 327 (521)
T ss_pred EcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhh
Confidence 77642 345679999986 468888877643 23445677777755444322
Q ss_pred ---CCeEEEEeCCCCcEEEeeEee
Q 045569 319 ---NEQLLLYDPNTQEMRDLGRKS 339 (362)
Q Consensus 319 ---~~~~~~yd~~~~~~~~v~~~~ 339 (362)
.+.|+.||+..++|.+-++++
T Consensus 328 g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 328 GEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred hhhhhhhhheecccchhhHhhhcc
Confidence 246999999999998777654
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.87 E-value=0.00024 Score=62.00 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=39.7
Q ss_pred CCcch----HHHHHHHHccCCccccccccccccchhhhhCChHHHHHH
Q 045569 6 DEHFL----EETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKH 49 (362)
Q Consensus 6 ~~~LP----~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~ 49 (362)
++.|| +++.+.||+.|...+|..|..|||+|+.+++++..-++-
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 56789 999999999999999999999999999999998766543
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.74 E-value=0.00073 Score=57.10 Aligned_cols=157 Identities=10% Similarity=0.159 Sum_probs=99.6
Q ss_pred cceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCC---CccEEEEEEcCCceeeeec---CCCCCC
Q 045569 181 FSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDN---DHKVILSFHLGNEVFEEIQ---EPYIPE 254 (362)
Q Consensus 181 ~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~~il~fD~~~e~~~~i~---~P~~~~ 254 (362)
...+.-|+.+++.|...+..- ..|......+++.++..+|-.....++ ...-+.++|+.+.+|+.+. .|+.-.
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G-~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEG-FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred cceeeeeccccccccccceee-ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 356788999999999765431 122222236778888888888653321 2336899999999999885 455433
Q ss_pred CCCcEEEEECCeEEEEEEcC----------CCCeEEEEEeeC--CeeEEEEEeCCCCC-ceeeEEEeeCCcEEEEec---
Q 045569 255 STPTILGIYNHSLCLLLSHN----------IENYYDIWVMKY--KCWIKQLSLGPLNG-VRTPLGFWKKGAFFVHST--- 318 (362)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~----------~~~~~~IW~l~~--~~W~~~~~i~~~~~-~~~~~~~~~~g~il~~~~--- 318 (362)
+. -...+++|.+++++... +.-.-+|-.|+- +.|.+...-...+. -.....+..+|++++..+
T Consensus 183 DF-H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng 261 (392)
T KOG4693|consen 183 DF-HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNG 261 (392)
T ss_pred hh-hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccch
Confidence 32 23456678888887642 112224444443 88887643332222 122334445888988754
Q ss_pred -----CCeEEEEeCCCCcEEEeeEee
Q 045569 319 -----NEQLLLYDPNTQEMRDLGRKS 339 (362)
Q Consensus 319 -----~~~~~~yd~~~~~~~~v~~~~ 339 (362)
-+.++.||++|..|..|...|
T Consensus 262 ~ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 262 TLNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred hhhhhhcceeecccccchheeeeccC
Confidence 346999999999999998765
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.4e-05 Score=68.73 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=37.3
Q ss_pred CCcchHHHHHHHHccCCccccccccccccchhhhhCChHH
Q 045569 6 DEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNF 45 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F 45 (362)
|+.||||+++.||+.||.|+|+++..|||+|+.+-++...
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 7899999999999999999999999999999999877654
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.54 E-value=0.0035 Score=53.13 Aligned_cols=135 Identities=14% Similarity=0.231 Sum_probs=88.1
Q ss_pred cceEEEEECCCCCceecccC--CCccccccCCcceEEECceEEEEeeccC----------CCccEEEEEEcCCceeeeec
Q 045569 181 FSHVAVYSLSTNSWRYCDCF--KSNHYYMDGAFDSVYLDGVCYWLSEFRD----------NDHKVILSFHLGNEVFEEIQ 248 (362)
Q Consensus 181 ~~~~eVyss~~~~W~~~~~~--~~~~~~~~~~~~~v~~~G~lywl~~~~~----------~~~~~il~fD~~~e~~~~i~ 248 (362)
...+++++..|-.||.+... |+.+.. ...++..+|.+|-...... .-...|++||+.++.|..-+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRD---FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p 232 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRD---FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP 232 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhh---hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC
Confidence 45688999999999988643 222222 3677888999999876442 12458999999999997652
Q ss_pred -CCCCCCCCC-cEEEEECCeEEEEEEcC---CCCeEEEEEeeC--CeeEEEEEeCCCCCc-eeeEEEeeCCcEEEEec
Q 045569 249 -EPYIPESTP-TILGIYNHSLCLLLSHN---IENYYDIWVMKY--KCWIKQLSLGPLNGV-RTPLGFWKKGAFFVHST 318 (362)
Q Consensus 249 -~P~~~~~~~-~~l~~~~g~L~l~~~~~---~~~~~~IW~l~~--~~W~~~~~i~~~~~~-~~~~~~~~~g~il~~~~ 318 (362)
.|....... -..-.++|++++++... ...--++|..+. ..|.++..-...+.- .+-.++.-++++++..+
T Consensus 233 ~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 233 ENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred CCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 222222211 35668899999988753 223448899987 789887755533221 23344445677877653
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.77 E-value=0.17 Score=48.56 Aligned_cols=202 Identities=10% Similarity=0.039 Sum_probs=115.8
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCceecc
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCD 198 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~ 198 (362)
.++|+|-.++.|.......... ..+ .......++ + +++.++.. .. ......++..|+..|+.|+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p-~~r-~g~~~~~~~------~-~l~lfGG~-~~---~~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEP-SPR-YGHSLSAVG------D-KLYLFGGT-DK---KYRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCC-Ccc-cceeEEEEC------C-eEEEEccc-cC---CCCChhheEeccCCCCcEEEec
Confidence 4999999998887665432211 110 001112222 1 23333211 10 0111347999999999999875
Q ss_pred cCCC-ccccccCCcceEEECceEEEEeeccCC--CccEEEEEEcCCceeeeecCCCCCCC-CC-cEEEEECCeEEEEEEc
Q 045569 199 CFKS-NHYYMDGAFDSVYLDGVCYWLSEFRDN--DHKVILSFHLGNEVFEEIQEPYIPES-TP-TILGIYNHSLCLLLSH 273 (362)
Q Consensus 199 ~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i~~P~~~~~-~~-~~l~~~~g~L~l~~~~ 273 (362)
.... +-+. .....+.++.++|........ ....+.+||+++.+|..+......-. .. ..++..+++++++...
T Consensus 156 ~~~~~P~~r--~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 156 PTGDPPPPR--AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred CcCCCCCCc--ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecc
Confidence 4322 1111 125667777778777654422 35679999999999998754322211 11 5678889999998875
Q ss_pred C--CCCeEEEEEeeC--CeeEEEEEeCC--CCCceeeEEEeeCCcEEEEec--------CCeEEEEeCCCCcEEEee
Q 045569 274 N--IENYYDIWVMKY--KCWIKQLSLGP--LNGVRTPLGFWKKGAFFVHST--------NEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 274 ~--~~~~~~IW~l~~--~~W~~~~~i~~--~~~~~~~~~~~~~g~il~~~~--------~~~~~~yd~~~~~~~~v~ 336 (362)
+ ....=++|.|+- ..|.+.....- ......... .....+++..+ -..++.||.+++.|..+.
T Consensus 234 ~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~ 309 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVE 309 (482)
T ss_pred ccCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeee
Confidence 4 223448999987 66764443331 112233333 33344555432 234788999998888776
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.68 E-value=0.13 Score=49.21 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=99.9
Q ss_pred eEEEEECCCCCceecccCCC-ccccccCCcceEEECceEEEEeeccC--CCccEEEEEEcCCceeeeecC----CCCCCC
Q 045569 183 HVAVYSLSTNSWRYCDCFKS-NHYYMDGAFDSVYLDGVCYWLSEFRD--NDHKVILSFHLGNEVFEEIQE----PYIPES 255 (362)
Q Consensus 183 ~~eVyss~~~~W~~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i~~----P~~~~~ 255 (362)
.+.+++.++..|......-. +.+. .....+.++..||....... .....+.+||+.+.+|..+.. |+....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r--~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~ 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPR--YGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG 166 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcc--cceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCccc
Confidence 58889999988986543321 2221 13677889999999886542 123479999999999987642 332222
Q ss_pred CCcEEEEECCeEEEEEEcCCC--CeEEEEEeeC--CeeEEEEEeCCCCC--ceeeEEEeeCCcEEEEec-C------CeE
Q 045569 256 TPTILGIYNHSLCLLLSHNIE--NYYDIWVMKY--KCWIKQLSLGPLNG--VRTPLGFWKKGAFFVHST-N------EQL 322 (362)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~--~~~~IW~l~~--~~W~~~~~i~~~~~--~~~~~~~~~~g~il~~~~-~------~~~ 322 (362)
-.++..+.+|.+.+..... ..-++|+++- ..|.+....+..+. ..+.+.+++ +++++..+ . ..+
T Consensus 167 --Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~-~~~~v~gG~~~~~~~l~D~ 243 (482)
T KOG0379|consen 167 --HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVG-NKLLVFGGGDDGDVYLNDV 243 (482)
T ss_pred --ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEEC-CeEEEEeccccCCceecce
Confidence 3567777888888876522 4678888876 77999998875432 334444443 44444432 2 348
Q ss_pred EEEeCCCCcEEEeeEe
Q 045569 323 LLYDPNTQEMRDLGRK 338 (362)
Q Consensus 323 ~~yd~~~~~~~~v~~~ 338 (362)
..+|+.+.+|+.+...
T Consensus 244 ~~ldl~~~~W~~~~~~ 259 (482)
T KOG0379|consen 244 HILDLSTWEWKLLPTG 259 (482)
T ss_pred Eeeecccceeeecccc
Confidence 9999999888866543
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.63 E-value=0.16 Score=46.11 Aligned_cols=145 Identities=15% Similarity=0.240 Sum_probs=90.3
Q ss_pred eEEEEECCCCCceecccCCCccccccCCcceEEEC-ceEEEEeeccC-------CCccEEEEEEcCCceeeeecCCCCCC
Q 045569 183 HVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLD-GVCYWLSEFRD-------NDHKVILSFHLGNEVFEEIQEPYIPE 254 (362)
Q Consensus 183 ~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~-------~~~~~il~fD~~~e~~~~i~~P~~~~ 254 (362)
.+.+|+.+++.|+.+..+.++.|... ...|.+- |.+|....... ..---+-.||+.+.+|..+.++....
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRss--hq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSS--HQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCcc--ceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 58899999999999877655454322 3444444 64444433221 01224889999999999999887654
Q ss_pred CCC-cEEEEECCeEEEEEEcCCCC-----eEEEEEeeC--CeeEEEEEeC--CCCCceeeEEEeeCCcEEEEec------
Q 045569 255 STP-TILGIYNHSLCLLLSHNIEN-----YYDIWVMKY--KCWIKQLSLG--PLNGVRTPLGFWKKGAFFVHST------ 318 (362)
Q Consensus 255 ~~~-~~l~~~~g~L~l~~~~~~~~-----~~~IW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~il~~~~------ 318 (362)
... -+++..+.+|.+++.....+ -=+||.++- -.|.+...=. |.+.-..-+.+...|.|++..+
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRV 256 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhh
Confidence 433 68899999999998754221 125666654 8899988622 1111122233444677766532
Q ss_pred ---------CCeEEEEeCCC
Q 045569 319 ---------NEQLLLYDPNT 329 (362)
Q Consensus 319 ---------~~~~~~yd~~~ 329 (362)
...++..++++
T Consensus 257 kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 257 KKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hhhhhcCceeeeeeeecCCc
Confidence 22477788776
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.43 E-value=0.0011 Score=57.46 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=39.9
Q ss_pred CCcchHHHHHHHHccCC-----ccccccccccccchhhhhCChHHHHHHhh
Q 045569 6 DEHFLEETIIEILSKLP-----VKSLLRFRCICKSWCALFNKHNFISKHLN 51 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP-----~ksl~r~r~VcK~W~~li~~~~F~~~~~~ 51 (362)
++.||||+|.+||.++= ..+|.++.+|||.|+-...+|+|-++...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 36799999999998864 58999999999999999999998876543
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.22 E-value=0.064 Score=33.48 Aligned_cols=40 Identities=13% Similarity=0.335 Sum_probs=31.9
Q ss_pred cceEEECceEEEEeeccC--CCccEEEEEEcCCceeeee-cCC
Q 045569 211 FDSVYLDGVCYWLSEFRD--NDHKVILSFHLGNEVFEEI-QEP 250 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~~P 250 (362)
...+.++|.||.+..... .....+..||+++++|+.+ ++|
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 567999999999987553 2356899999999999988 344
No 36
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=3.1 Score=37.39 Aligned_cols=133 Identities=15% Similarity=0.065 Sum_probs=79.4
Q ss_pred CcceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeecc-----CCCccEEEEEEcCCceeeee-cCCCCC
Q 045569 180 EFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFR-----DNDHKVILSFHLGNEVFEEI-QEPYIP 253 (362)
Q Consensus 180 ~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----~~~~~~il~fD~~~e~~~~i-~~P~~~ 253 (362)
+..++-+|+..++.|+.....+- ++ .. ..++...|..-++.... .+......-|....++|... ++|...
T Consensus 194 ~n~ev~sy~p~~n~W~~~G~~pf-~~-~a--Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLGENPF-YG-NA--GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred ccccccccccccchhhhcCcCcc-cC-cc--CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 34578889999999999876542 22 11 34445455434443221 11234566777788999887 566554
Q ss_pred CCCC-----cEEEEECCeEEEEEEcC--------------------CCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEe
Q 045569 254 ESTP-----TILGIYNHSLCLLLSHN--------------------IENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFW 308 (362)
Q Consensus 254 ~~~~-----~~l~~~~g~L~l~~~~~--------------------~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~ 308 (362)
.... ..-+..+|.+.+..... ...+=+||.+++.+|..+..++. .+..-+.+.
T Consensus 270 ~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~--~l~YG~s~~ 347 (381)
T COG3055 270 GSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ--GLAYGVSLS 347 (381)
T ss_pred CCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC--CccceEEEe
Confidence 4321 22345566665555421 22456899999999999998885 233333344
Q ss_pred eCCcEEEEec
Q 045569 309 KKGAFFVHST 318 (362)
Q Consensus 309 ~~g~il~~~~ 318 (362)
.+++++++..
T Consensus 348 ~nn~vl~IGG 357 (381)
T COG3055 348 YNNKVLLIGG 357 (381)
T ss_pred cCCcEEEEcc
Confidence 4667777654
No 37
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.62 E-value=1.5 Score=38.01 Aligned_cols=118 Identities=12% Similarity=0.165 Sum_probs=77.0
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCceee-eecCCCCCCC--C------C--cEEEEECCeEEEEEEcCCC-Ce
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFE-EIQEPYIPES--T------P--TILGIYNHSLCLLLSHNIE-NY 278 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~--~------~--~~l~~~~g~L~l~~~~~~~-~~ 278 (362)
...|..||.+|.-... ...|+.||+.+++.. ...+|..... . . ..+++-+.-|-++-..... ..
T Consensus 72 tG~vVYngslYY~~~~----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYN----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred CCeEEECCcEEEEecC----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 6678899999999864 458999999999998 7788876532 1 1 5677777778877765433 35
Q ss_pred EEEEEeeC------CeeEEEEEeCCCCCceeeEEEeeCCcEEEEecC-----CeEEEEeCCCCcEEEeeE
Q 045569 279 YDIWVMKY------KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTN-----EQLLLYDPNTQEMRDLGR 337 (362)
Q Consensus 279 ~~IW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~-----~~~~~yd~~~~~~~~v~~ 337 (362)
+.|=.|+. +.|.-.+ .. +.... ++.-+|.++..... .-.++||..+++-+.+.+
T Consensus 148 ivvskld~~tL~v~~tw~T~~--~k-~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNTSY--PK-RSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEEEeeCcccCceEEEEEecc--Cc-hhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 77777765 4454321 11 11112 23335667666542 236899999988776664
No 38
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.68 E-value=4.5 Score=37.90 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=79.1
Q ss_pred ceEEEEECCCC-----CceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCce---eeeecCCCCC
Q 045569 182 SHVAVYSLSTN-----SWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEV---FEEIQEPYIP 253 (362)
Q Consensus 182 ~~~eVyss~~~-----~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~---~~~i~~P~~~ 253 (362)
.++.+.+...+ .|+.+........ ...-..+|.+|.++... .....|++.|+.+.. |..+-.|...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~-----~~v~~~~~~~yi~Tn~~-a~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE-----YYVDHHGDRLYILTNDD-APNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E-----EEEEEETTEEEEEE-TT--TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE-----EEEEccCCEEEEeeCCC-CCCcEEEEecccccccccceeEEcCCCC
Confidence 45666666654 6666543221110 22334577888887643 346789999998765 5543333322
Q ss_pred CCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEE-EeeCCcEEEEec----CCeEEEEeCC
Q 045569 254 ESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLG-FWKKGAFFVHST----NEQLLLYDPN 328 (362)
Q Consensus 254 ~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~-~~~~g~il~~~~----~~~~~~yd~~ 328 (362)
...-..+...++.|.+.........+.|+-++. .|.....-.+..+....+. -...+++++... ...++.||++
T Consensus 326 ~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 326 DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp SEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred ceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 111134556788888877765556666666651 3444332222212111111 123456666543 4679999999
Q ss_pred CCcEEEee
Q 045569 329 TQEMRDLG 336 (362)
Q Consensus 329 ~~~~~~v~ 336 (362)
+++.+.+.
T Consensus 405 t~~~~~~k 412 (414)
T PF02897_consen 405 TGELTLLK 412 (414)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99988764
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.42 E-value=5.8 Score=36.94 Aligned_cols=202 Identities=15% Similarity=0.109 Sum_probs=107.2
Q ss_pred eCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCcee-cccCCC
Q 045569 124 NRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRY-CDCFKS 202 (362)
Q Consensus 124 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~-~~~~~~ 202 (362)
+|-++.|.+.--++..... .....+.+.|.. .|.++.-. ..++++|++.+.+=+. +.....
T Consensus 8 t~e~~~w~~~~~~~~~ke~-----~~vssl~fsp~~-P~d~aVt~------------S~rvqly~~~~~~~~k~~srFk~ 69 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEH-----NSVSSLCFSPKH-PYDFAVTS------------SVRVQLYSSVTRSVRKTFSRFKD 69 (487)
T ss_pred Cccchhhhhhccccccccc-----CcceeEecCCCC-CCceEEec------------ccEEEEEecchhhhhhhHHhhcc
Confidence 5666777665333322211 124556666643 33333322 2469999998764332 221110
Q ss_pred ccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCcee-eee---cCCCCCCCCCcEEEEECCeEEEEEEcCCCCe
Q 045569 203 NHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVF-EEI---QEPYIPESTPTILGIYNHSLCLLLSHNIENY 278 (362)
Q Consensus 203 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~-~~i---~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 278 (362)
.. ....+..+|.+...... ...+-.||..+... +.+ +.|... ......++.+.+.+. ....
T Consensus 70 ~v-----~s~~fR~DG~LlaaGD~----sG~V~vfD~k~r~iLR~~~ah~apv~~----~~f~~~d~t~l~s~s--Dd~v 134 (487)
T KOG0310|consen 70 VV-----YSVDFRSDGRLLAAGDE----SGHVKVFDMKSRVILRQLYAHQAPVHV----TKFSPQDNTMLVSGS--DDKV 134 (487)
T ss_pred ce-----eEEEeecCCeEEEccCC----cCcEEEeccccHHHHHHHhhccCceeE----EEecccCCeEEEecC--CCce
Confidence 00 13335566998877654 34799999555222 222 233322 344455666665555 4688
Q ss_pred EEEEEeeCCeeEEEEEeCCCCCceeeEEEe-eCCcEEEEec-CCeEEEEeCCCCcEEEeeEee-ceEEEEEEEec--cee
Q 045569 279 YDIWVMKYKCWIKQLSLGPLNGVRTPLGFW-KKGAFFVHST-NEQLLLYDPNTQEMRDLGRKS-FHFSVHIYRES--LIR 353 (362)
Q Consensus 279 ~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~g~il~~~~-~~~~~~yd~~~~~~~~v~~~~-~~~~~~~y~~S--L~~ 353 (362)
+.+|.+.... + ...+.-....-+...+. .++.|++..+ ++.+-.||.++.+-+.+.+++ .-.....|.+| ++-
T Consensus 135 ~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 135 VKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA 212 (487)
T ss_pred EEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE
Confidence 9999998833 2 44454322222333333 3455777655 778999999988744445544 22344455543 554
Q ss_pred ccCCccc
Q 045569 354 VKRGRKF 360 (362)
Q Consensus 354 ~~~~~~~ 360 (362)
.-+|+.+
T Consensus 213 sAgGn~v 219 (487)
T KOG0310|consen 213 SAGGNSV 219 (487)
T ss_pred EcCCCeE
Confidence 4455544
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.96 E-value=0.3 Score=29.82 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=30.7
Q ss_pred cceEEECceEEEEeeccC--CCccEEEEEEcCCceeeee
Q 045569 211 FDSVYLDGVCYWLSEFRD--NDHKVILSFHLGNEVFEEI 247 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i 247 (362)
...+.++|.+|.+..... .....+..||+.+.+|+.+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 567999999999987653 2356899999999999987
No 41
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.86 E-value=4.3 Score=38.31 Aligned_cols=158 Identities=17% Similarity=0.270 Sum_probs=80.6
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCC--Ccee
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTN--SWRY 196 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~--~W~~ 196 (362)
.+.|+|-+|+||. +|......+.+ ..++||-.|. -|+++++..-. +..+.=+.|.+... .|+.
T Consensus 58 ELHvYNTatnqWf-~PavrGDiPpg----cAA~GfvcdG----trilvFGGMvE------YGkYsNdLYELQasRWeWkr 122 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-APAVRGDIPPG----CAAFGFVCDG----TRILVFGGMVE------YGKYSNDLYELQASRWEWKR 122 (830)
T ss_pred hhhhhccccceee-cchhcCCCCCc----hhhcceEecC----ceEEEEccEee------eccccchHHHhhhhhhhHhh
Confidence 5899999999996 55544433333 1244554443 35555432110 11234456666654 5666
Q ss_pred cccCC-----CccccccCCcceEEECceEEEEeeccC------------CCccEEEEEEcCCceeee-e-----cCCCCC
Q 045569 197 CDCFK-----SNHYYMDGAFDSVYLDGVCYWLSEFRD------------NDHKVILSFHLGNEVFEE-I-----QEPYIP 253 (362)
Q Consensus 197 ~~~~~-----~~~~~~~~~~~~v~~~G~lywl~~~~~------------~~~~~il~fD~~~e~~~~-i-----~~P~~~ 253 (362)
+.... ++.|.+ ..+-+.++.+.|....-.. -...+|+-+-........ | .+|...
T Consensus 123 lkp~~p~nG~pPCPRl--GHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 123 LKPKTPKNGPPPCPRL--GHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred cCCCCCCCCCCCCCcc--CceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 54322 123322 2444666788888764221 123455555544443321 1 245444
Q ss_pred CCCCcEE-EEECC---eEEEEEEcCCCCeEEEEEeeC--CeeEEEE
Q 045569 254 ESTPTIL-GIYNH---SLCLLLSHNIENYYDIWVMKY--KCWIKQL 293 (362)
Q Consensus 254 ~~~~~~l-~~~~g---~L~l~~~~~~~~~~~IW~l~~--~~W~~~~ 293 (362)
+.....+ .+.+. ++.+.+.....+-=++|.|+- -.|.|..
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred ccceeEEEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 3322222 23222 355555544556669999986 7898855
No 42
>PF13964 Kelch_6: Kelch motif
Probab=92.83 E-value=0.29 Score=30.42 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.7
Q ss_pred ceEEEEeCCCcccccCCCCCc
Q 045569 118 NRITLWNRATKESRVLPKCTT 138 (362)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~ 138 (362)
+.+.++||.|++|..+|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 468999999999999998775
No 43
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.71 E-value=5.9 Score=34.05 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=103.7
Q ss_pred eeeEEEee-cCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEE
Q 045569 108 NGIFCIFG-NNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAV 186 (362)
Q Consensus 108 ~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eV 186 (362)
+|-|++.+ ...+++.++|.+++...+..+. ..|+.++...+.+ +... .....+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l--~v~~------------~~~~~~ 64 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL--YVAD------------SGGIAV 64 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE--EEEE------------TTCEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE--EEEE------------cCceEE
Confidence 45555553 4567999999999876533332 2566666322222 2221 123677
Q ss_pred EECCCCCceecccCCC-ccccccCCcceEEECceEEEEeeccCC--Cc--cEEEEEEcCCceeeeecCCCCCCCCCcEEE
Q 045569 187 YSLSTNSWRYCDCFKS-NHYYMDGAFDSVYLDGVCYWLSEFRDN--DH--KVILSFHLGNEVFEEIQEPYIPESTPTILG 261 (362)
Q Consensus 187 yss~~~~W~~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~--~~--~~il~fD~~~e~~~~i~~P~~~~~~~~~l~ 261 (362)
++..++.++.+...+. ..+......-.+--+|.+|.-...... .. ..|..+|.. .+...+.-... .. --++
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~--~p-NGi~ 140 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG--FP-NGIA 140 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES--SE-EEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc--cc-cceE
Confidence 7888988887654321 101100013345557887776543311 11 579999999 44443311100 00 1233
Q ss_pred -EECCe-EEEEEEcCCCCeEEEEEeeC--CeeEEEEEe-CCCCC--ceeeEEEeeCCcEEEEec-CCeEEEEeCCCCcEE
Q 045569 262 -IYNHS-LCLLLSHNIENYYDIWVMKY--KCWIKQLSL-GPLNG--VRTPLGFWKKGAFFVHST-NEQLLLYDPNTQEMR 333 (362)
Q Consensus 262 -~~~g~-L~l~~~~~~~~~~~IW~l~~--~~W~~~~~i-~~~~~--~~~~~~~~~~g~il~~~~-~~~~~~yd~~~~~~~ 333 (362)
.-+|+ |++... ....+..+.++. ..+.....+ ..... ...-+++..+|.|++... .+++..||++.+.+.
T Consensus 141 ~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 141 FSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLR 218 (246)
T ss_dssp EETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEE
T ss_pred ECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEE
Confidence 33555 555443 234443344433 335544433 22222 244466667899988754 789999999977777
Q ss_pred EeeEee
Q 045569 334 DLGRKS 339 (362)
Q Consensus 334 ~v~~~~ 339 (362)
.+.++.
T Consensus 219 ~i~~p~ 224 (246)
T PF08450_consen 219 EIELPV 224 (246)
T ss_dssp EEE-SS
T ss_pred EEcCCC
Confidence 777663
No 44
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.45 E-value=4.4 Score=34.50 Aligned_cols=117 Identities=10% Similarity=0.180 Sum_probs=67.8
Q ss_pred EECceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCC---CCC-CcEEEEE--CCe--EEEEEEc---CCCCeEEEEE
Q 045569 215 YLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIP---EST-PTILGIY--NHS--LCLLLSH---NIENYYDIWV 283 (362)
Q Consensus 215 ~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~---~~~-~~~l~~~--~g~--L~l~~~~---~~~~~~~IW~ 283 (362)
.+||-+ ++... ..+...|+.|+++..+|.|+.. ... ...++-. .+. +.-+... .....++|+.
T Consensus 3 sCnGLl-c~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLI-CFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred ccceEE-EEecC-----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 468877 55433 3699999999999999766542 111 0122211 122 2211111 1235788999
Q ss_pred eeCCeeEEEEEeCCCCCceeeEEEeeCCcEEEEec-C-----CeEEEEeCCCCcEEE-eeEe
Q 045569 284 MKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST-N-----EQLLLYDPNTQEMRD-LGRK 338 (362)
Q Consensus 284 l~~~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~-~-----~~~~~yd~~~~~~~~-v~~~ 338 (362)
+..++|............... ++.-+|.++.... . ..++.||++++++++ +..+
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred eCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 988899887632211111122 3444777765542 1 169999999999995 6654
No 45
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.40 E-value=6.1 Score=33.48 Aligned_cols=188 Identities=10% Similarity=0.060 Sum_probs=94.5
Q ss_pred eeeeEEEeecCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEE
Q 045569 107 YNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAV 186 (362)
Q Consensus 107 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eV 186 (362)
.+|.++..+....++.+|+.|++.+.--..+... .. . +....-+|+... . ...+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~------~------~~~~~~~v~v~~----~-------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-SG------A------PVVDGGRVYVGT----S-------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-GS------G------EEEETTEEEEEE----T-------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-cc------e------eeeccccccccc----c-------eeeeEe
Confidence 6788877767777999999999854322221110 00 0 111112232221 1 125777
Q ss_pred EECCCC--Ccee-cccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCcee--ee-ecCCCCCCC-----
Q 045569 187 YSLSTN--SWRY-CDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVF--EE-IQEPYIPES----- 255 (362)
Q Consensus 187 yss~~~--~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~--~~-i~~P~~~~~----- 255 (362)
++..++ .|+. ....+. .. ..........++.+|.....+ .|.++|+.+.+- .. +..|.....
T Consensus 91 ~d~~tG~~~W~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~g-----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPP-AG-VRSSSSPAVDGDRLYVGTSSG-----KLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp EETTTSCEEEEEEE-SSCT-CS-TB--SEEEEETTEEEEEETCS-----EEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred cccCCcceeeeeccccccc-cc-cccccCceEecCEEEEEeccC-----cEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 776666 7984 433221 11 111133344466777666444 799999886544 33 333332111
Q ss_pred C-CcEEEEECCeEEEEEEcCCCCeEEEEEeeCC--eeEEEEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCCCcE
Q 045569 256 T-PTILGIYNHSLCLLLSHNIENYYDIWVMKYK--CWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEM 332 (362)
Q Consensus 256 ~-~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~--~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~~~~ 332 (362)
. ...+...+|.+++.... ...+.+ -++.+ .|.+. +. .. .......++.+++...++.++++|++|++.
T Consensus 164 ~~~~~~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~~---~~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--IS---GI-YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--SS----E-CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ccccceEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--CC---Cc-cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 0 02344446755554432 333444 44443 36222 22 11 111233345566665689999999999987
Q ss_pred EE
Q 045569 333 RD 334 (362)
Q Consensus 333 ~~ 334 (362)
.+
T Consensus 235 ~W 236 (238)
T PF13360_consen 235 VW 236 (238)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.23 E-value=0.48 Score=29.32 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=31.2
Q ss_pred cceEEECceEEEEeec----cCCCccEEEEEEcCCceeeeecC
Q 045569 211 FDSVYLDGVCYWLSEF----RDNDHKVILSFHLGNEVFEEIQE 249 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~----~~~~~~~il~fD~~~e~~~~i~~ 249 (362)
...+.++|+||..... .......+..||+++.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 5678999999999876 12345679999999999998754
No 47
>smart00284 OLF Olfactomedin-like domains.
Probab=91.98 E-value=7.6 Score=33.62 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=74.6
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCceeee-ecCCCCC-CC-------CC--cEEEEECCeEEEEEEcC-CCCe
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEE-IQEPYIP-ES-------TP--TILGIYNHSLCLLLSHN-IENY 278 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~-i~~P~~~-~~-------~~--~~l~~~~g~L~l~~~~~-~~~~ 278 (362)
...|..||.+|.-... ...|+.||+.+++... -.+|... .. +. ..|++-+.-|-++-... ....
T Consensus 77 tG~VVYngslYY~~~~----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ 152 (255)
T smart00284 77 TGVVVYNGSLYFNKFN----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK 152 (255)
T ss_pred ccEEEECceEEEEecC----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC
Confidence 6779999999996644 3479999999999964 3567432 11 11 57788777888776643 3466
Q ss_pred EEEEEeeC------CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec-----CCeEEEEeCCCCcEEEeeE
Q 045569 279 YDIWVMKY------KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST-----NEQLLLYDPNTQEMRDLGR 337 (362)
Q Consensus 279 ~~IW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~-----~~~~~~yd~~~~~~~~v~~ 337 (362)
|.|=.|+. +.|.-.+ +. +.... +|.-+|.++.... ..-.++||..+++-+.+.+
T Consensus 153 ivvSkLnp~tL~ve~tW~T~~--~k-~sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 153 IVISKLNPATLTIENTWITTY--NK-RSASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred EEEEeeCcccceEEEEEEcCC--Cc-ccccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 77777776 4454422 11 11111 2223566766642 2337899999887666554
No 48
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=89.19 E-value=3.2 Score=31.87 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=49.1
Q ss_pred EEEEEEcCCc--eeeeecCCCCCCCC--------C----cEEEEECCeEEEEEEcC--------CCCeEEEEEeeC----
Q 045569 233 VILSFHLGNE--VFEEIQEPYIPEST--------P----TILGIYNHSLCLLLSHN--------IENYYDIWVMKY---- 286 (362)
Q Consensus 233 ~il~fD~~~e--~~~~i~~P~~~~~~--------~----~~l~~~~g~L~l~~~~~--------~~~~~~IW~l~~---- 286 (362)
.|+..|+-++ .++.|++|...... . ..++..+|+|-++.... ....+.+|.|+.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5889998765 67888998765211 1 46778899998777643 256899999987
Q ss_pred -CeeEEEEEeCCC
Q 045569 287 -KCWIKQLSLGPL 298 (362)
Q Consensus 287 -~~W~~~~~i~~~ 298 (362)
..|.+-+.+...
T Consensus 87 ~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 87 SWEWKKDCEVDLS 99 (131)
T ss_pred CCCEEEeEEEEhh
Confidence 679999988753
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.69 E-value=25 Score=34.31 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=38.5
Q ss_pred CCcchHHHHHHHHccCCccccccccccccchhhhhCChHHHHH
Q 045569 6 DEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISK 48 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~ 48 (362)
...||.++...||..|+.++++++++||+.|+.++.+.....+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 5679999999999999999999999999999999987666553
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.55 E-value=19 Score=32.83 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=77.7
Q ss_pred eEEEEECCCCC--ceecccCCCccccccCCcceEE-ECc-eEEEEeeccCCCccEEEEEEcC--Cceeeeec----CCCC
Q 045569 183 HVAVYSLSTNS--WRYCDCFKSNHYYMDGAFDSVY-LDG-VCYWLSEFRDNDHKVILSFHLG--NEVFEEIQ----EPYI 252 (362)
Q Consensus 183 ~~eVyss~~~~--W~~~~~~~~~~~~~~~~~~~v~-~~G-~lywl~~~~~~~~~~il~fD~~--~e~~~~i~----~P~~ 252 (362)
.+.+|+...+. ........ .+.-.+.+..++ -+| .+|..... ...|.+|+.. +.+++.++ +|..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~--~~~G~GPRh~~f~pdg~~~Yv~~e~----s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIK--VPPGSGPRHLAFSPDGKYAYVVNEL----SNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEE--CSTTSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EEEEEEEeCCCceEEEeeccc--cccCCCCcEEEEcCCcCEEEEecCC----CCcEEEEeecccCCceeEEEEeeecccc
Confidence 58888887655 43322111 110001111222 255 46666544 3456666666 66665542 5543
Q ss_pred CCCC-C-cEEEEE-CCeEEEEEEcCCCCeEEEEEeeC--CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec--CCeEEEE
Q 045569 253 PEST-P-TILGIY-NHSLCLLLSHNIENYYDIWVMKY--KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST--NEQLLLY 325 (362)
Q Consensus 253 ~~~~-~-~~l~~~-~g~L~l~~~~~~~~~~~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~--~~~~~~y 325 (362)
.... . ..+... +|+..++... ....|.++.++. +.-.++..++......+-+.+..+|+.++... ++.+.+|
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 3222 2 344443 5664333332 578999999965 45555555543223356677777888766543 5667777
Q ss_pred --eCCCCcEEEee
Q 045569 326 --DPNTQEMRDLG 336 (362)
Q Consensus 326 --d~~~~~~~~v~ 336 (362)
|.+++.+..+.
T Consensus 320 ~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 320 DIDPDTGKLTPVG 332 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEeCCCCcEEEec
Confidence 55788887765
No 51
>smart00612 Kelch Kelch domain.
Probab=88.53 E-value=0.65 Score=27.94 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.4
Q ss_pred ceEEEEECCCCCceecccCCC
Q 045569 182 SHVAVYSLSTNSWRYCDCFKS 202 (362)
Q Consensus 182 ~~~eVyss~~~~W~~~~~~~~ 202 (362)
..+++|+.+++.|+.++.++.
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeEEEECCCCCeEccCCCCCC
Confidence 469999999999998876543
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.43 E-value=13 Score=31.98 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=85.1
Q ss_pred eEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCC----ceeeeecCCCCCCC-CC
Q 045569 183 HVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGN----EVFEEIQEPYIPES-TP 257 (362)
Q Consensus 183 ~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~----e~~~~i~~P~~~~~-~~ 257 (362)
...+|+..++++|.+......+. +...+.-||.+.-..... .....+-.|+..+ ..|. ..|..... ++
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FC----Sgg~~L~dG~ll~tGG~~-~G~~~ir~~~p~~~~~~~~w~--e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFC----SGGAFLPDGRLLQTGGDN-DGNKAIRIFTPCTSDGTCDWT--ESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcc----cCcCCCCCCCEEEeCCCC-ccccceEEEecCCCCCCCCce--ECcccccCCCc
Confidence 46788899999988765432222 144455667666443322 1234677788754 3443 33332222 22
Q ss_pred -c-EEEEECCeEEEEEEcCCCCeEEEEEeeC-----CeeEEEEEeC-CCC-CceeeEEEeeCCcEEEEecCCeEEEEeCC
Q 045569 258 -T-ILGIYNHSLCLLLSHNIENYYDIWVMKY-----KCWIKQLSLG-PLN-GVRTPLGFWKKGAFFVHSTNEQLLLYDPN 328 (362)
Q Consensus 258 -~-~l~~~~g~L~l~~~~~~~~~~~IW~l~~-----~~W~~~~~i~-~~~-~~~~~~~~~~~g~il~~~~~~~~~~yd~~ 328 (362)
. ....-+|++.+++... ....+.|=-+. ..|....... ... ..+-.+.+..+|+|++... ..-..||.+
T Consensus 120 YpT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~~s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-RGSIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-CCcEEEeCC
Confidence 2 3344588988888753 44556554322 1121111111 111 2223344557899998864 457778999
Q ss_pred CCcE-EEee-EeeceEEEEEEEecce
Q 045569 329 TQEM-RDLG-RKSFHFSVHIYRESLI 352 (362)
Q Consensus 329 ~~~~-~~v~-~~~~~~~~~~y~~SL~ 352 (362)
++++ +.+. +++. .+..+...|-|
T Consensus 198 ~n~v~~~lP~lPg~-~R~YP~sgssv 222 (243)
T PF07250_consen 198 TNTVVRTLPDLPGG-PRNYPASGSSV 222 (243)
T ss_pred CCeEEeeCCCCCCC-ceecCCCcceE
Confidence 9976 5555 4442 34445554443
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.21 E-value=16 Score=33.43 Aligned_cols=114 Identities=11% Similarity=0.213 Sum_probs=70.4
Q ss_pred CceEEEEeeccCCCccEEEEEEcCCce--ee---eecCCCCCCCCCcEEEEE-CCe-EEEEEEcCCCCeEEEEEeeC--C
Q 045569 217 DGVCYWLSEFRDNDHKVILSFHLGNEV--FE---EIQEPYIPESTPTILGIY-NHS-LCLLLSHNIENYYDIWVMKY--K 287 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~e~--~~---~i~~P~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~IW~l~~--~ 287 (362)
+|..-|....+ ...|..|++..+. +. .+.+|...+. ..++.- +|+ ++++.. ....+.++.++. .
T Consensus 154 dg~~v~v~dlG---~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP--Rh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 154 DGRFVYVPDLG---ADRVYVYDIDDDTGKLTPVDSIKVPPGSGP--RHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDG 226 (345)
T ss_dssp TSSEEEEEETT---TTEEEEEEE-TTS-TEEEEEEEECSTTSSE--EEEEE-TTSSEEEEEET--TTTEEEEEEEETTTT
T ss_pred CCCEEEEEecC---CCEEEEEEEeCCCceEEEeeccccccCCCC--cEEEEcCCcCEEEEecC--CCCcEEEEeecccCC
Confidence 46666666544 4578888887665 53 3556665443 344433 555 445443 578999999993 7
Q ss_pred eeEEEEEeCCCCC------ceeeEEEeeCCcEEEEec--CCeEEEEeC--CCCcEEEeeE
Q 045569 288 CWIKQLSLGPLNG------VRTPLGFWKKGAFFVHST--NEQLLLYDP--NTQEMRDLGR 337 (362)
Q Consensus 288 ~W~~~~~i~~~~~------~~~~~~~~~~g~il~~~~--~~~~~~yd~--~~~~~~~v~~ 337 (362)
.+....++...+. ...-+.+..+|+.++..+ .+.+..|++ ++++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 7877777764321 234456667888766654 667888887 5577877663
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.09 E-value=0.25 Score=45.16 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=34.6
Q ss_pred CCcchHHHHHHHHccCCccccccccccccchhhhhCCh
Q 045569 6 DEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKH 43 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~ 43 (362)
...||.|++..||+-|..|++.|++.+||.|+-+..|.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 44799999999999999999999999999999987654
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=86.62 E-value=18 Score=30.49 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=75.4
Q ss_pred eEEEEECCCC--CceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceee-eecCCCCCCCCCcE
Q 045569 183 HVAVYSLSTN--SWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFE-EIQEPYIPESTPTI 259 (362)
Q Consensus 183 ~~eVyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~ 259 (362)
.+..++..++ .|+.--........ ...+.-+|.+|-....+ .|.++|..+++-. ...+|..... .
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~-----~l~~~d~~tG~~~W~~~~~~~~~~--~- 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPV----ATAVPDGGRVYVASGDG-----NLYALDAKTGKVLWRFDLPGPISG--A- 71 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEE----ETEEEETTEEEEEETTS-----EEEEEETTTSEEEEEEECSSCGGS--G-
T ss_pred EEEEEECCCCCEEEEEECCCCCCCcc----ceEEEeCCEEEEEcCCC-----EEEEEECCCCCEEEEeeccccccc--e-
Confidence 4677888776 68873211100110 22455788888885443 8999998665442 2344444322 2
Q ss_pred EEEECCeEEEEEEcCCCCeEEEEEee--C--CeeEE-EEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCCCcEEE
Q 045569 260 LGIYNHSLCLLLSHNIENYYDIWVMK--Y--KCWIK-QLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRD 334 (362)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~~~IW~l~--~--~~W~~-~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~~~~~~ 334 (362)
....++.+++... .. .|+.++ + ..|.. ...-+.......+.....++.+++....+.++.+|+++++...
T Consensus 72 ~~~~~~~v~v~~~---~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 72 PVVDGGRVYVGTS---DG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEETTEEEEEET---TS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred eeecccccccccc---ee--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 3667888876663 23 555555 3 66874 3322222222222222234556666558899999999988743
No 56
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.76 E-value=17 Score=31.76 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=75.3
Q ss_pred ceEeeeeeeeEEEee-cCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeeccccccc
Q 045569 101 GELVGPYNGIFCIFG-NNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLY 179 (362)
Q Consensus 101 ~~~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 179 (362)
.-+++.-+|=|-+.+ ..+.+...||.+..-..+|++...... .=..+.|+... +.+. .+.
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g-------sRriwsdpig~----~wit-twg------- 252 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG-------SRRIWSDPIGR----AWIT-TWG------- 252 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccc-------ccccccCccCc----EEEe-ccC-------
Confidence 445555566666652 233467789999987788887652211 12333444221 2222 111
Q ss_pred CcceEEEEECCCCCceecccCCCccccccCCcceEEECc-eEEEEeeccCCCccEEEEEEcCCceeeeecCCCCCC
Q 045569 180 EFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDG-VCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPE 254 (362)
Q Consensus 180 ~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~ 254 (362)
.-.+.-|+..+.+|.+-.-+.. -+ ...+++++. -.-|+..-. ...|..||.++++|+++++|....
T Consensus 253 -~g~l~rfdPs~~sW~eypLPgs-~a----rpys~rVD~~grVW~sea~---agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPLPGS-KA----RPYSMRVDRHGRVWLSEAD---AGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred -CceeeEeCcccccceeeeCCCC-CC----CcceeeeccCCcEEeeccc---cCceeecCcccceEEEecCCCCCC
Confidence 2358889999999987643211 11 134455554 245665443 568999999999999999987643
No 57
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=84.69 E-value=2.7 Score=25.76 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=19.0
Q ss_pred EEEeeCCcEEEEec-------CCeEEEEeCCCCcEEEe
Q 045569 305 LGFWKKGAFFVHST-------NEQLLLYDPNTQEMRDL 335 (362)
Q Consensus 305 ~~~~~~g~il~~~~-------~~~~~~yd~~~~~~~~v 335 (362)
.+...++.|++..+ -+.+..||+++++|+++
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 33445577777643 23689999999999887
No 58
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=84.42 E-value=38 Score=32.17 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=61.0
Q ss_pred EECceEEEEeecc------CCCccEEEEEEcCCceeeeecCCCCCCCCC--------------------------cEE--
Q 045569 215 YLDGVCYWLSEFR------DNDHKVILSFHLGNEVFEEIQEPYIPESTP--------------------------TIL-- 260 (362)
Q Consensus 215 ~~~G~lywl~~~~------~~~~~~il~fD~~~e~~~~i~~P~~~~~~~--------------------------~~l-- 260 (362)
.++|-+|.|..-+ +.....|...|-.=.+-+.+.+|+..+... +.+
T Consensus 285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 5566666665322 123567888885556667788888754210 111
Q ss_pred -EEECCeEEEEEEc--------CCCCeEEEEEeeC-CeeEEEEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCCC
Q 045569 261 -GIYNHSLCLLLSH--------NIENYYDIWVMKY-KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQ 330 (362)
Q Consensus 261 -~~~~g~L~l~~~~--------~~~~~~~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~~ 330 (362)
+.-++-+.++... .....+.+|. +. -.|+++..-+ .....+...|-+.+-...++.++.|.+++
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~-----~~~~~fhpsg~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDP-----AECADFHPSGVVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCc-----eeEeeccCcceEEEeeccceEEEEecccc
Confidence 1111112222221 1456788888 33 7788776332 12334444453333334667777777776
Q ss_pred cEEEee
Q 045569 331 EMRDLG 336 (362)
Q Consensus 331 ~~~~v~ 336 (362)
.+..+.
T Consensus 439 ~lv~~~ 444 (626)
T KOG2106|consen 439 DLVTIH 444 (626)
T ss_pred eeEEEE
Confidence 655444
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.96 E-value=33 Score=31.88 Aligned_cols=110 Identities=7% Similarity=0.077 Sum_probs=63.0
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCc--eeeeecCCCCCCC-------C-CcEEEEECCeEEEEEEcCCCCeEE
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNE--VFEEIQEPYIPES-------T-PTILGIYNHSLCLLLSHNIENYYD 280 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e--~~~~i~~P~~~~~-------~-~~~l~~~~g~L~l~~~~~~~~~~~ 280 (362)
..++..+|.+|.....+ .+.++|.++. .|+. +++..... . ....+..+|++++... ...+.
T Consensus 63 ~sPvv~~~~vy~~~~~g-----~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ 133 (394)
T PRK11138 63 LHPAVAYNKVYAADRAG-----LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVY 133 (394)
T ss_pred eccEEECCEEEEECCCC-----eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcC---CCEEE
Confidence 36688999999987654 7999998754 4542 33221000 0 0234566777775443 22333
Q ss_pred EEEeeC--CeeEEEEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCCCcEEE
Q 045569 281 IWVMKY--KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRD 334 (362)
Q Consensus 281 IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~~~~~~ 334 (362)
-.-.+. ..|.... +. .....|+. .++.+++...++.++.+|.++++..+
T Consensus 134 ald~~tG~~~W~~~~--~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 134 ALNAEDGEVAWQTKV--AG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEECCCCCCcccccC--CC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 333333 5676543 11 11223432 35677776667889999999987653
No 60
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=81.08 E-value=3.3 Score=25.31 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=22.0
Q ss_pred cceEEE-CceEEEEeeccCC--CccEEEEEEcCCceeeee
Q 045569 211 FDSVYL-DGVCYWLSEFRDN--DHKVILSFHLGNEVFEEI 247 (362)
Q Consensus 211 ~~~v~~-~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i 247 (362)
..++.+ +|.+|........ ....+..||+.+++|+.+
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 345556 5788887754421 234688999999999988
No 61
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.22 E-value=29 Score=31.45 Aligned_cols=119 Identities=15% Similarity=0.150 Sum_probs=66.6
Q ss_pred ceEEE--CceEEEEeeccCCCccEEEEEEcCCceeeee---cCCCCC--CCCC----cEEEEE---CCeEEEEEEcC---
Q 045569 212 DSVYL--DGVCYWLSEFRDNDHKVILSFHLGNEVFEEI---QEPYIP--ESTP----TILGIY---NHSLCLLLSHN--- 274 (362)
Q Consensus 212 ~~v~~--~G~lywl~~~~~~~~~~il~fD~~~e~~~~i---~~P~~~--~~~~----~~l~~~---~g~L~l~~~~~--- 274 (362)
.+.+. +|.+||.+..+ .|...|++.+.-... ++-... ...+ .++..+ .|+|++.....
T Consensus 188 ~~~~~~~~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp --EEETTTTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred ccceECCCCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence 44444 35788988776 799999987754332 221111 1112 344433 67898876532
Q ss_pred --CCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCc-EEEE-ec-CCeEEEEeCCCCcEE-Eee
Q 045569 275 --IENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGA-FFVH-ST-NEQLLLYDPNTQEMR-DLG 336 (362)
Q Consensus 275 --~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-il~~-~~-~~~~~~yd~~~~~~~-~v~ 336 (362)
+...=+||+++-..=.++.+|+.... ...+.+..+.+ +|+. .. ++.+.+||..|++.. .+.
T Consensus 263 sHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 263 SHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 45678999999844356666664211 22456666654 4443 33 567999999998754 344
No 62
>PLN02772 guanylate kinase
Probab=80.15 E-value=14 Score=34.31 Aligned_cols=74 Identities=8% Similarity=0.024 Sum_probs=51.7
Q ss_pred cceEEECceEEEEeeccCC--CccEEEEEEcCCceeeeec----CCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEe
Q 045569 211 FDSVYLDGVCYWLSEFRDN--DHKVILSFHLGNEVFEEIQ----EPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVM 284 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i~----~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l 284 (362)
..+|.+++++|.+...... ....+.+||..+.+|..-. .|.... ++..++.-+++|.++... ....=+||.|
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~-GhSa~v~~~~rilv~~~~-~~~~~~~w~l 105 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK-GYSAVVLNKDRILVIKKG-SAPDDSIWFL 105 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC-cceEEEECCceEEEEeCC-CCCccceEEE
Confidence 6789999999999864422 3457999999999997532 333332 223445557888888765 3445799999
Q ss_pred eC
Q 045569 285 KY 286 (362)
Q Consensus 285 ~~ 286 (362)
+-
T Consensus 106 ~~ 107 (398)
T PLN02772 106 EV 107 (398)
T ss_pred Ec
Confidence 85
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=79.60 E-value=38 Score=28.94 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=66.6
Q ss_pred CceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEE--ECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEE
Q 045569 217 DGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGI--YNHSLCLLLSHNIENYYDIWVMKYKCWIKQLS 294 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~ 294 (362)
+|.+||..... ..|..+|+.+++.+.+.+|.. .-++. .+|+|++... ..+.+.-++..+++....
T Consensus 11 ~g~l~~~D~~~----~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 11 DGRLYWVDIPG----GRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp TTEEEEEETTT----TEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEcCC----CEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEee
Confidence 69999998653 489999999999998888872 22332 3677766553 233444333378888887
Q ss_pred eCCCC-Cce--eeEEEeeCCcEEEEecC---------CeEEEEeCCCCcEEEe
Q 045569 295 LGPLN-GVR--TPLGFWKKGAFFVHSTN---------EQLLLYDPNTQEMRDL 335 (362)
Q Consensus 295 i~~~~-~~~--~~~~~~~~g~il~~~~~---------~~~~~yd~~~~~~~~v 335 (362)
..... ... .-+.+..+|.+++.... ++++.++++ ++.+.+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 74221 222 33556677888886531 468999998 555544
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=79.51 E-value=50 Score=30.18 Aligned_cols=129 Identities=12% Similarity=-0.019 Sum_probs=69.6
Q ss_pred eeeeEEEeecCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccc-cccCcceEE
Q 045569 107 YNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLD-LLYEFSHVA 185 (362)
Q Consensus 107 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~-~~~~~~~~e 185 (362)
.+.-|+..+......|+++.|+....+|.+..+.... ..+.. .+ ++..+......... ..... .+|
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~p-----isv~V-----G~--~LY~m~~~~~~~~~~~~~~~-~FE 141 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCP-----ISVSV-----GD--KLYAMDRSPFPEPAGRPDFP-CFE 141 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcce-----EEEEe-----CC--eEEEeeccCccccccCccce-eEE
Confidence 3444555544456999999999999999876532221 11222 12 24544321111100 00001 466
Q ss_pred EEEC----------CCCCceecccCCCcccccc------CCcceEEECceEEEEeeccCCCccEEEEEEcCCceeeee--
Q 045569 186 VYSL----------STNSWRYCDCFKSNHYYMD------GAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEI-- 247 (362)
Q Consensus 186 Vyss----------~~~~W~~~~~~~~~~~~~~------~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-- 247 (362)
+++- ++.+|+.++.+| +.... -...+|+ +|.--|+...+. .....+||+++.+|+..
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PP--f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~--~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPP--FVRDRRYSDYRITSYAVV-DGRTIFVSVNGR--RWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCC--ccccCCcccceEEEEEEe-cCCeEEEEecCC--ceEEEEEEcCCcceeeccc
Confidence 6632 224677765533 32211 1234455 888778865531 13699999999999875
Q ss_pred -cCCCCC
Q 045569 248 -QEPYIP 253 (362)
Q Consensus 248 -~~P~~~ 253 (362)
.||..-
T Consensus 217 W~LPF~G 223 (342)
T PF07893_consen 217 WMLPFHG 223 (342)
T ss_pred eecCcCC
Confidence 577643
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.58 E-value=59 Score=29.92 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=58.0
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCce--eeeecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeC--
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEV--FEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKY-- 286 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~-- 286 (362)
..++..+|.+|.....+ .+.+||..+++ |+ ..++..... ..+..++.+++... ...+..+-.+.
T Consensus 59 ~~p~v~~~~v~v~~~~g-----~v~a~d~~tG~~~W~-~~~~~~~~~---~p~v~~~~v~v~~~---~g~l~ald~~tG~ 126 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG-----TVVALDAETGKRLWR-VDLDERLSG---GVGADGGLVFVGTE---KGEVIALDAEDGK 126 (377)
T ss_pred cceEEECCEEEEECCCC-----eEEEEEccCCcEeee-ecCCCCccc---ceEEcCCEEEEEcC---CCEEEEEECCCCc
Confidence 45678899999877654 79999987554 43 344443221 23334555554332 22333333323
Q ss_pred CeeEEEEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCCCcEE
Q 045569 287 KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMR 333 (362)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~~~~~ 333 (362)
..|.... +. .....|. ..++.+++...++.++.+|.++++..
T Consensus 127 ~~W~~~~--~~-~~~~~p~--v~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 127 ELWRAKL--SS-EVLSPPL--VANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred Eeeeecc--Cc-eeecCCE--EECCEEEEECCCCeEEEEEcCCCcee
Confidence 4565331 11 0112232 23566777666788999999887654
No 66
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.34 E-value=8.1 Score=21.08 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=20.3
Q ss_pred eCCcEEEEecCCeEEEEeCCCCcEEE
Q 045569 309 KKGAFFVHSTNEQLLLYDPNTQEMRD 334 (362)
Q Consensus 309 ~~g~il~~~~~~~~~~yd~~~~~~~~ 334 (362)
.+|.+++...++.++++|.++++..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 35667777678899999999987654
No 67
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=77.29 E-value=6 Score=29.03 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=29.5
Q ss_pred eEEEEeCCCc-ccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEE
Q 045569 119 RITLWNRATK-ESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIF 168 (362)
Q Consensus 119 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 168 (362)
.++++||.|+ .|+ |..+. ...+.+-+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~Wv--Ps~~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWI--PASKH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeE--eCCCC---------ceeEEEEecCCCcEEEEEEec
Confidence 4899999996 775 33321 126788899999999999974
No 68
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=75.77 E-value=6.4 Score=24.11 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=27.6
Q ss_pred EEEEECCeEEEEEEc----CCCCeEEEEEeeC--CeeEEEEE
Q 045569 259 ILGIYNHSLCLLLSH----NIENYYDIWVMKY--KCWIKQLS 294 (362)
Q Consensus 259 ~l~~~~g~L~l~~~~----~~~~~~~IW~l~~--~~W~~~~~ 294 (362)
..+..+++|++++.. .....-++|+++. ..|.++..
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 467889999999987 2456678888887 88987654
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=74.60 E-value=77 Score=29.81 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=60.0
Q ss_pred ccEEEEEEcCCceeeeecCCCCCCCCC-cEEE--EECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEE
Q 045569 231 HKVILSFHLGNEVFEEIQEPYIPESTP-TILG--IYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGF 307 (362)
Q Consensus 231 ~~~il~fD~~~e~~~~i~~P~~~~~~~-~~l~--~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (362)
..++.+||+.+.+.+.+..|....... .... -.+.-|.+.+ ....|.+--.+..+|.-...|+ +...-+++
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G---~~G~I~lLhakT~eli~s~Kie---G~v~~~~f 352 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG---NNGHIHLLHAKTKELITSFKIE---GVVSDFTF 352 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc---cCceEEeehhhhhhhhheeeec---cEEeeEEE
Confidence 458999999999999998887665322 2222 2222233322 2344444444446666666555 33345566
Q ss_pred eeCCcEEEEe-cCCeEEEEeCCCCcEEE
Q 045569 308 WKKGAFFVHS-TNEQLLLYDPNTQEMRD 334 (362)
Q Consensus 308 ~~~g~il~~~-~~~~~~~yd~~~~~~~~ 334 (362)
..+++.++.. ..+.++.+|++++....
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEE
Confidence 6677665554 57899999999986543
No 70
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=73.41 E-value=74 Score=29.08 Aligned_cols=85 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred eEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCce-----------eeeecCCC
Q 045569 183 HVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEV-----------FEEIQEPY 251 (362)
Q Consensus 183 ~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~-----------~~~i~~P~ 251 (362)
...-|+-+++.|+.++.-. +|. ...+.++..-=-|+.-........+.+.|+.+.. |..+..|.
T Consensus 200 GTysfDt~~~~W~~~GdW~--LPF---~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWM--LPF---HGQAEYVPELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPE 274 (342)
T ss_pred EEEEEEcCCcceeecccee--cCc---CCccEECCCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccccccc
Confidence 3666777778999997653 332 1456666555567765442222589999997632 22233333
Q ss_pred CCCCCCcEEEEE-CCeEEEEEE
Q 045569 252 IPESTPTILGIY-NHSLCLLLS 272 (362)
Q Consensus 252 ~~~~~~~~l~~~-~g~L~l~~~ 272 (362)
........|+.+ +|+.|++..
T Consensus 275 ~~~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 275 EWRHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccccCceEEECCCCCEEEEEE
Confidence 311111455544 567887775
No 71
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=73.30 E-value=84 Score=30.71 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=61.0
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCC--ceeee-ecCCCCCCC------CCcEEEEECCeEEEEEEcCCCCeEEE
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGN--EVFEE-IQEPYIPES------TPTILGIYNHSLCLLLSHNIENYYDI 281 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--e~~~~-i~~P~~~~~------~~~~l~~~~g~L~l~~~~~~~~~~~I 281 (362)
..++.++|.+|.....+ .|.++|..+ +.|+. ...|..... ....++..+|++++.... . .+
T Consensus 63 stPvv~~g~vyv~s~~g-----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d---g--~l 132 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD---A--RL 132 (527)
T ss_pred cCCEEECCEEEEECCCC-----cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC---C--EE
Confidence 56788999999876554 699999876 55654 233322111 001234556776654432 1 34
Q ss_pred EEeeC----CeeEEEEEeCCCC---CceeeEEEeeCCcEEEEec------CCeEEEEeCCCCcEEE
Q 045569 282 WVMKY----KCWIKQLSLGPLN---GVRTPLGFWKKGAFFVHST------NEQLLLYDPNTQEMRD 334 (362)
Q Consensus 282 W~l~~----~~W~~~~~i~~~~---~~~~~~~~~~~g~il~~~~------~~~~~~yd~~~~~~~~ 334 (362)
..++- ..|..... +... ....|+.. ++.|++... .+.+..||.+|++..+
T Consensus 133 ~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 44443 45654331 1110 11234332 456666432 4679999999988654
No 72
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.04 E-value=85 Score=29.17 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=61.6
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCc--eeeeecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeC--
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNE--VFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKY-- 286 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e--~~~~i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~-- 286 (362)
..++..+|.+|.....+ .+.++|..+. .|+. +.+.. ..++..+|.|++.... ..+.....+.
T Consensus 250 ~sP~v~~~~vy~~~~~g-----~l~ald~~tG~~~W~~-~~~~~-----~~~~~~~~~vy~~~~~---g~l~ald~~tG~ 315 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-----NLVALDLRSGQIVWKR-EYGSV-----NDFAVDGGRIYLVDQN---DRVYALDTRGGV 315 (394)
T ss_pred CCcEEECCEEEEEEcCC-----eEEEEECCCCCEEEee-cCCCc-----cCcEEECCEEEEEcCC---CeEEEEECCCCc
Confidence 56778899999877554 7999999865 4543 22111 1234556677665532 2222222222
Q ss_pred CeeEEEEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCCCcEEE
Q 045569 287 KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRD 334 (362)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~~~~~~ 334 (362)
..|.... .. ......|+. .+|.|++...++.+++.|.++++...
T Consensus 316 ~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 316 ELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3454321 11 011233442 36788887778889999999988654
No 73
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=71.26 E-value=70 Score=27.92 Aligned_cols=136 Identities=10% Similarity=0.076 Sum_probs=74.8
Q ss_pred cceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCC-ceeeeecCCCCCCCCCcE
Q 045569 181 FSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGN-EVFEEIQEPYIPESTPTI 259 (362)
Q Consensus 181 ~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~-e~~~~i~~P~~~~~~~~~ 259 (362)
.+.+..|+..++.=......+..+ + ...-+.+++.+|-++... .....||..+ +.-..++.|. .+ +-
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~--F--gEGit~~~d~l~qLTWk~----~~~f~yd~~tl~~~~~~~y~~---EG-WG 134 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRY--F--GEGITILGDKLYQLTWKE----GTGFVYDPNTLKKIGTFPYPG---EG-WG 134 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESSS----SEEEEEETTTTEEEEEEE-SS---S---E
T ss_pred cEEEEEEECCCCcEEEEEECCccc--c--ceeEEEECCEEEEEEecC----CeEEEEccccceEEEEEecCC---cc-eE
Confidence 467888999988543322222212 1 144578899999999874 4899999976 2334455552 22 56
Q ss_pred EEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEe-----eCCcEEEEe-cCCeEEEEeCCCCcEE
Q 045569 260 LGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFW-----KKGAFFVHS-TNEQLLLYDPNTQEMR 333 (362)
Q Consensus 260 l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~-----~~g~il~~~-~~~~~~~yd~~~~~~~ 333 (362)
|+..+..|.+... .. .|+.++......+.+|.... -..|+... -+|.|+--. ....++.-|++|+++.
T Consensus 135 Lt~dg~~Li~SDG---S~--~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 135 LTSDGKRLIMSDG---SS--RLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp EEECSSCEEEE-S---SS--EEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEE
T ss_pred EEcCCCEEEEECC---cc--ceEEECCcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 7766666655443 22 45556554455555555321 12232221 256665432 2678999999999886
Q ss_pred E
Q 045569 334 D 334 (362)
Q Consensus 334 ~ 334 (362)
.
T Consensus 209 ~ 209 (264)
T PF05096_consen 209 G 209 (264)
T ss_dssp E
T ss_pred E
Confidence 5
No 74
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.38 E-value=9.6 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=19.1
Q ss_pred CcEEEEecCCeEEEEeCCCCcEEE
Q 045569 311 GAFFVHSTNEQLLLYDPNTQEMRD 334 (362)
Q Consensus 311 g~il~~~~~~~~~~yd~~~~~~~~ 334 (362)
|.|++...++.++.+|.+|++..+
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEE
Confidence 356666668899999999998765
No 75
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=70.30 E-value=16 Score=27.21 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=29.3
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEE
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIF 168 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 168 (362)
.+.+.||.|+.| ||..+.... ...+.+.+++..+.|+|+...
T Consensus 10 ~Vm~~d~~tk~W--~P~~~~~~~------ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKW--VPAGGGSQG------FSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcE--EcCCCCCCC------cceEEEEEcCCCCEEEEEEee
Confidence 478899999997 454332111 125777888989999999874
No 76
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=70.19 E-value=90 Score=28.69 Aligned_cols=134 Identities=10% Similarity=0.145 Sum_probs=72.5
Q ss_pred eEEEEECCCC--CceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCc--eeee-ecCCCCCCC--
Q 045569 183 HVAVYSLSTN--SWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNE--VFEE-IQEPYIPES-- 255 (362)
Q Consensus 183 ~~eVyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e--~~~~-i~~P~~~~~-- 255 (362)
.+..++..++ .|+.-...+. .. ......++..+|.+|.-...+ .+.++|+.++ .|+. +..|.....
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~-~~-~~~~~sp~~~~~~v~~~~~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPA-LT-LRGSASPVIADGGVLVGFAGG-----KLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCc-ee-ecCCCCCEEECCEEEEECCCC-----EEEEEEccCCCEeeeeccccCCCCCchh
Confidence 4677777765 5875433221 11 111245677888877654433 7999998765 4532 333321110
Q ss_pred ----CCcEEEEECCeEEEEEEcCCCCeEEEEEeeC--CeeEEEEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCC
Q 045569 256 ----TPTILGIYNHSLCLLLSHNIENYYDIWVMKY--KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNT 329 (362)
Q Consensus 256 ----~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~ 329 (362)
........+|.+++... ...+..+.++. ..|.... . ....|. ..++.|++...++.++++|.++
T Consensus 229 ~~~~~~~~p~~~~~~vy~~~~---~g~l~a~d~~tG~~~W~~~~--~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 229 RLVDVDGDPVVDGGQVYAVSY---QGRVAALDLRSGRVLWKRDA--S---SYQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred hhhccCCccEEECCEEEEEEc---CCEEEEEECCCCcEEEeecc--C---CccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 00122334666666543 23555555544 4575541 1 112232 2357787777778899999988
Q ss_pred CcEE
Q 045569 330 QEMR 333 (362)
Q Consensus 330 ~~~~ 333 (362)
++..
T Consensus 299 G~~~ 302 (377)
T TIGR03300 299 GSEL 302 (377)
T ss_pred CcEE
Confidence 7643
No 77
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=69.87 E-value=84 Score=28.24 Aligned_cols=105 Identities=11% Similarity=-0.074 Sum_probs=60.8
Q ss_pred ceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeC-CeeEEEEEeC
Q 045569 218 GVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKY-KCWIKQLSLG 296 (362)
Q Consensus 218 G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~-~~W~~~~~i~ 296 (362)
+.+||....+ ..|+.+|..+.+-+.+..|..... ..+...+|.|.... ..+.++..+. ..|+....+.
T Consensus 37 ~~L~w~DI~~----~~i~r~~~~~g~~~~~~~p~~~~~--~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 37 GALLWVDILG----GRIHRLDPETGKKRVFPSPGGFSS--GALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CEEEEEeCCC----CeEEEecCCcCceEEEECCCCccc--ceeecCCCeEEEEc-----cccEEEeccCCceeEEecccc
Confidence 4679988764 489999999999999999987643 33444455554322 2334444443 5555555444
Q ss_pred CCCC--ceeeEEEeeCCcEEEEecC------------CeEEEEeCCCCcEE
Q 045569 297 PLNG--VRTPLGFWKKGAFFVHSTN------------EQLLLYDPNTQEMR 333 (362)
Q Consensus 297 ~~~~--~~~~~~~~~~g~il~~~~~------------~~~~~yd~~~~~~~ 333 (362)
.-.. ...-..+..+|.+++-... +.++.+|+..+..+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~ 156 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR 156 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE
Confidence 2111 1122334456777664322 35999998544443
No 78
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=69.24 E-value=67 Score=29.97 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=74.2
Q ss_pred EeeeeeeeEEEe----ecC-ceEEEEeCCCcccccCCCCCcCC---CCcccceeeeeeeeecCCCCCeEEEEEEEEeecc
Q 045569 103 LVGPYNGIFCIF----GNN-NRITLWNRATKESRVLPKCTTVF---PKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEK 174 (362)
Q Consensus 103 ~~~s~~GLl~~~----~~~-~~~~V~NP~T~~~~~LP~~~~~~---~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~ 174 (362)
-.|--+.||+++ .+. -+++|+|..|++..++....... +.. .-..+.=||-=.+++||++-..
T Consensus 233 ~yA~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPed---qGiIFpgGYyLqtGe~K~Fd~~------ 303 (448)
T PF12458_consen 233 AYARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPED---QGIIFPGGYYLQTGEYKTFDTD------ 303 (448)
T ss_pred eeeecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCcc---CceEccCceEeccCCceeeccc------
Confidence 445567888888 233 37999999999988876543210 100 0001222444445566654331
Q ss_pred cccccCcceEEEEECCCCCc---eecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCC
Q 045569 175 LDLLYEFSHVAVYSLSTNSW---RYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPY 251 (362)
Q Consensus 175 ~~~~~~~~~~eVyss~~~~W---~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~ 251 (362)
...- |.+.++ .. ..++|...... ...+.++.||+-..+ +.-|.
T Consensus 304 ----------------~~~l~F~r~vrSP---NG-----------EDvLYvF~~~~-~g~~~Ll~YN~I~k~---v~tPi 349 (448)
T PF12458_consen 304 ----------------MDGLEFERKVRSP---NG-----------EDVLYVFYARE-EGRYLLLPYNLIRKE---VATPI 349 (448)
T ss_pred ----------------CCCceEEEEecCC---CC-----------ceEEEEEEECC-CCcEEEEechhhhhh---hcCCe
Confidence 1100 111111 10 13566665433 236789999987754 34454
Q ss_pred CCCCCCcEEEEECCeEEEEEEc-CC---CCeEEEEEeeC
Q 045569 252 IPESTPTILGIYNHSLCLLLSH-NI---ENYYDIWVMKY 286 (362)
Q Consensus 252 ~~~~~~~~l~~~~g~L~l~~~~-~~---~~~~~IW~l~~ 286 (362)
.+.. .-.--+|+|+++... .+ ..-|+||..--
T Consensus 350 ~chG---~alf~DG~l~~fra~~~EptrvHp~QiWqTPf 385 (448)
T PF12458_consen 350 ICHG---YALFEDGRLVYFRAEGDEPTRVHPMQIWQTPF 385 (448)
T ss_pred eccc---eeEecCCEEEEEecCCCCcceeccceeecCCc
Confidence 4432 234458999988875 22 24578887643
No 79
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=68.54 E-value=8.2 Score=23.61 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=17.7
Q ss_pred eEEEEeCCCcccccCCCCCcC
Q 045569 119 RITLWNRATKESRVLPKCTTV 139 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~ 139 (362)
.++++||.|++|.+++..|.+
T Consensus 20 d~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 20 DVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred CEEEEECCCCEEEECCCCCCC
Confidence 589999999999999776553
No 80
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=68.10 E-value=79 Score=27.23 Aligned_cols=118 Identities=15% Similarity=0.233 Sum_probs=68.6
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCcee-eeecCCCCCCCC--------C--cEEEEECCeEEEEEEcC-CCCe
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVF-EEIQEPYIPEST--------P--TILGIYNHSLCLLLSHN-IENY 278 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~--------~--~~l~~~~g~L~l~~~~~-~~~~ 278 (362)
...|..||.+|..... ...|+.||+.++.- ....+|...... + ..+++.+.-|.++-... ....
T Consensus 71 Tg~VVynGs~yynk~~----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~ 146 (249)
T KOG3545|consen 71 TGHVVYNGSLYYNKAG----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGT 146 (249)
T ss_pred cceEEEcceEEeeccC----CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCc
Confidence 6779999999998755 35799999998544 334555443211 1 45666666676666543 3445
Q ss_pred EEEEEeeC------CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec----CCeE-EEEeCCCCcEEEeeE
Q 045569 279 YDIWVMKY------KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST----NEQL-LLYDPNTQEMRDLGR 337 (362)
Q Consensus 279 ~~IW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~----~~~~-~~yd~~~~~~~~v~~ 337 (362)
+.|=.|+. ..|.-.+.-. ... -++.-+|-++.... ...+ ++||..+++-+.+.+
T Consensus 147 iv~skLdp~tl~~e~tW~T~~~k~---~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 147 IVLSKLDPETLEVERTWNTTLPKR---SAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred EEeeccCHHHhheeeeeccccCCC---CcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 55556654 3443222111 111 12233566666543 2333 799999888877664
No 81
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=67.92 E-value=3.2 Score=37.09 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=32.9
Q ss_pred cCCCcchHHHHHHHHccCC--------ccccccccccccchhhhhCC
Q 045569 4 TGDEHFLEETIIEILSKLP--------VKSLLRFRCICKSWCALFNK 42 (362)
Q Consensus 4 ~~~~~LP~Dll~eIL~rLP--------~ksl~r~r~VcK~W~~li~~ 42 (362)
..|+.||.+++.+|+.|.- -++++.+..|||.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4688999999999999984 23789999999999997643
No 82
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.88 E-value=1e+02 Score=31.64 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=24.8
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCC--ceeee
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGN--EVFEE 246 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--e~~~~ 246 (362)
..++.++|++|.-+... .+.++|..+ +.|+.
T Consensus 188 ~TPlvvgg~lYv~t~~~-----~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN-----KVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECCCC-----eEEEEECCCCcEEEEE
Confidence 67899999999987654 799999875 56654
No 83
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.95 E-value=90 Score=27.49 Aligned_cols=219 Identities=13% Similarity=0.067 Sum_probs=115.7
Q ss_pred EeeeeeeeEEEe-ecCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCC-----CCCeEEEEEEE------E
Q 045569 103 LVGPYNGIFCIF-GNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPM-----STDYKLVLIFT------L 170 (362)
Q Consensus 103 ~~~s~~GLl~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~-----~~~ykVv~~~~------~ 170 (362)
+--+-+|-|-+. ...+.+==.||.|++..+.|......+. .+..|=|.. ++. -|+++.. +
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-------giv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-------GIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-------eEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 334556767666 3344455679999999988876553322 122222211 111 3444421 0
Q ss_pred eecccccccCcceEEEEECCCCCceecccC-----CC------ccccccC-Ccce--EEECceEEEEeeccCCCccEEEE
Q 045569 171 WNEKLDLLYEFSHVAVYSLSTNSWRYCDCF-----KS------NHYYMDG-AFDS--VYLDGVCYWLSEFRDNDHKVILS 236 (362)
Q Consensus 171 ~~~~~~~~~~~~~~eVyss~~~~W~~~~~~-----~~------~~~~~~~-~~~~--v~~~G~lywl~~~~~~~~~~il~ 236 (362)
+.-..+......+-.||+-..+-|-+-... .+ .++.-.+ ...+ +.-||.+|+-...+ ..|..
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiar 214 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIAR 214 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEE
Confidence 100111122346778999999899643211 11 1111111 2333 45578988875443 47999
Q ss_pred EEcCCceeeeecCCCCCCCCCcEE-EEECCeEEEEEEcCCCCeEEEEEeeC--CeeEEEEEeCCCCCceeeEEEeeCCcE
Q 045569 237 FHLGNEVFEEIQEPYIPESTPTIL-GIYNHSLCLLLSHNIENYYDIWVMKY--KCWIKQLSLGPLNGVRTPLGFWKKGAF 313 (362)
Q Consensus 237 fD~~~e~~~~i~~P~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (362)
.|+.+..-+.++.|.........+ ...-|++-..... .. .+-+.+- .+|.. +.++-.+--...+.+...|.+
T Consensus 215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg--~g--~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--TG--SLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred cccccCCcceecCCCcccccccccccCccCcEEEeccC--Cc--eeeEeCccccccee-eeCCCCCCCcceeeeccCCcE
Confidence 999999888999998743222111 1223333332211 11 2222222 44543 334432222233445556777
Q ss_pred EEEe-cCCeEEEEeCCCCcEEEeeEe
Q 045569 314 FVHS-TNEQLLLYDPNTQEMRDLGRK 338 (362)
Q Consensus 314 l~~~-~~~~~~~yd~~~~~~~~v~~~ 338 (362)
.+.. ..+.+..+|+++.++..+.++
T Consensus 290 W~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 290 WLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred EeeccccCceeecCcccceEEEecCC
Confidence 7743 367799999999999887753
No 84
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.53 E-value=12 Score=21.71 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=18.7
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCC
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGN 241 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~ 241 (362)
..++..+|.+|.....+ .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg-----~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-----NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-----EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-----EEEEEeCCC
Confidence 45688899999988765 799999864
No 85
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=64.88 E-value=1.2e+02 Score=27.99 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=74.0
Q ss_pred eEEEEECCCCCceec-ccCCCccccccCCcc-eEEECceEEEEeeccCCCccEEEEEEcCCce--eeeecCC--CCCCCC
Q 045569 183 HVAVYSLSTNSWRYC-DCFKSNHYYMDGAFD-SVYLDGVCYWLSEFRDNDHKVILSFHLGNEV--FEEIQEP--YIPEST 256 (362)
Q Consensus 183 ~~eVyss~~~~W~~~-~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~il~fD~~~e~--~~~i~~P--~~~~~~ 256 (362)
.......++..|... ........ ... ++..+|++|.....+ .|.+||.++.+ |+.-..+ ....
T Consensus 36 ~~~~~~~g~~~W~~~~~~~~~~~~----~~~~~~~~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~-- 104 (370)
T COG1520 36 AVANNTSGTLLWSVSLGSGGGGIY----AGPAPADGDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLLGAVAQLS-- 104 (370)
T ss_pred EEEcccCcceeeeeecccCccceE----eccccEeeCCeEEEecCCC-----cEEEEeCCCCcEEecccCcCcceecc--
Confidence 355556667788643 21111111 133 599999999986554 79999998866 6543333 1111
Q ss_pred CcEEEEECCeEEEEEEcCCCCeEEEEEeeC----CeeEEEEEeCCCCCceeeEEEeeCCcEEEEecCCeEEEEeCCCCcE
Q 045569 257 PTILGIYNHSLCLLLSHNIENYYDIWVMKY----KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEM 332 (362)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~~~~~~~yd~~~~~~ 332 (362)
..+...+|++++-... . .++.++. ..|.....- . ..+..+ .+..++.+++...++.++..|.++++.
T Consensus 105 -~~~~~~~G~i~~g~~~--g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~ 175 (370)
T COG1520 105 -GPILGSDGKIYVGSWD--G---KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGTL 175 (370)
T ss_pred -CceEEeCCeEEEeccc--c---eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCcE
Confidence 1222237776554432 1 6777766 455554433 1 111122 223356666665578899999998876
Q ss_pred EE
Q 045569 333 RD 334 (362)
Q Consensus 333 ~~ 334 (362)
++
T Consensus 176 ~W 177 (370)
T COG1520 176 KW 177 (370)
T ss_pred EE
Confidence 54
No 86
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.63 E-value=55 Score=33.56 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=47.5
Q ss_pred EEEEECCeEEEEEEcCCCCeEEEEEeeC-CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec-CCeEEEEeCCCCc
Q 045569 259 ILGIYNHSLCLLLSHNIENYYDIWVMKY-KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST-NEQLLLYDPNTQE 331 (362)
Q Consensus 259 ~l~~~~g~L~l~~~~~~~~~~~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~-~~~~~~yd~~~~~ 331 (362)
.-+..++.|=++......+.+.+|.|.+ ..|+.--.-+........+ ++..-++++..+ ++.+-+||++..+
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvl-fhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVL-FHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEE-ecCccceeEecCCCccEEEEeccccc
Confidence 4455666655555544678999999999 8898866555544433333 334456666554 6779999998765
No 87
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=60.45 E-value=1.4e+02 Score=27.45 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=69.5
Q ss_pred EEECceEEEEeeccCCCccEEEEEEcCCc------eeeeecCCCC---CCCCCcEEEE---ECCeEEEEEEcC-----CC
Q 045569 214 VYLDGVCYWLSEFRDNDHKVILSFHLGNE------VFEEIQEPYI---PESTPTILGI---YNHSLCLLLSHN-----IE 276 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~e------~~~~i~~P~~---~~~~~~~l~~---~~g~L~l~~~~~-----~~ 276 (362)
.-.+|..+|.+..+ .|..+|+.+. .|..+..-.. ......+... -+++|++..... ..
T Consensus 202 ~~~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 202 SNKSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred EcCCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 34479999999875 7888886443 2333321111 1000022232 245677644321 12
Q ss_pred CeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCc-EEEEec--CCeEEEEeCCCCcE-EEe
Q 045569 277 NYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGA-FFVHST--NEQLLLYDPNTQEM-RDL 335 (362)
Q Consensus 277 ~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-il~~~~--~~~~~~yd~~~~~~-~~v 335 (362)
..=+||+++-.++..+.+|.... -...+.+..+|+ .++..+ .+.+.++|..+.+. +.+
T Consensus 277 ~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 22389999888889999988542 234566778888 666544 56699999998754 455
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=60.22 E-value=1.7e+02 Score=29.08 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=53.5
Q ss_pred ccEEEEEEcCCceeeeecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEee
Q 045569 231 HKVILSFHLGNEVFEEIQEPYIPESTPTILG-IYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWK 309 (362)
Q Consensus 231 ~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (362)
...|.-.|+..|....+..-.... -.+. ..++.+.+.+. +..+++||.-++ ....|..+........++.
T Consensus 199 Dg~Ir~w~~~ge~l~~~~ghtn~v---Ysis~~~~~~~Ivs~g--EDrtlriW~~~e----~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 199 DGSIRLWDLDGEVLLEMHGHTNFV---YSISMALSDGLIVSTG--EDRTLRIWKKDE----CVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred CceEEEEeccCceeeeeeccceEE---EEEEecCCCCeEEEec--CCceEEEeecCc----eEEEEecCccceEEEEEee
Confidence 346666677666655442211110 2233 45666766665 678999999874 3344554332234455667
Q ss_pred CCcEEEEecCCeEEEEeCC
Q 045569 310 KGAFFVHSTNEQLLLYDPN 328 (362)
Q Consensus 310 ~g~il~~~~~~~~~~yd~~ 328 (362)
+|+|+....++.+.+|-.+
T Consensus 270 NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 270 NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCEEEeccCceEEEEEec
Confidence 8888888888887777765
No 89
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=59.17 E-value=36 Score=20.21 Aligned_cols=39 Identities=5% Similarity=0.042 Sum_probs=28.3
Q ss_pred cEEEEECCeEEEEEEcCC--CCeEEEEEeeC--CeeEEEEEeC
Q 045569 258 TILGIYNHSLCLLLSHNI--ENYYDIWVMKY--KCWIKQLSLG 296 (362)
Q Consensus 258 ~~l~~~~g~L~l~~~~~~--~~~~~IW~l~~--~~W~~~~~i~ 296 (362)
...+..+++|++++.... ...-.+|+++- ..|...-.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 467889999999998643 34455666655 8999987653
No 90
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=58.81 E-value=28 Score=29.72 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=39.3
Q ss_pred eeeeeEEEeecCceEEEEeCCCcccccC--CCCCcCCCCcccceeeeeeeeecCCCCCeEEEEE
Q 045569 106 PYNGIFCIFGNNNRITLWNRATKESRVL--PKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLI 167 (362)
Q Consensus 106 s~~GLl~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~ 167 (362)
..+|.|.-.+...++|-.||.|+.-..+ .+........ .++|-|+|..+.-+||.-
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~------~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGT------AFGVDFNPAADRLRVVSN 93 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCc------eEEEecCcccCcEEEEcc
Confidence 4566666666667799999999997666 3332222222 688999999998888854
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.04 E-value=1.4e+02 Score=26.51 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCeEEEEEeeC-CeeEEEEEeCCCCCceee---EEEeeCC-cEEEEecCCeEEEEeCCCCcEEEeeEee
Q 045569 276 ENYYDIWVMKY-KCWIKQLSLGPLNGVRTP---LGFWKKG-AFFVHSTNEQLLLYDPNTQEMRDLGRKS 339 (362)
Q Consensus 276 ~~~~~IW~l~~-~~W~~~~~i~~~~~~~~~---~~~~~~g-~il~~~~~~~~~~yd~~~~~~~~v~~~~ 339 (362)
...++||.++. +.=+-+... ....| ++..++| +++....++.+-.||+.+++...|....
T Consensus 49 D~tVR~wevq~~g~~~~ka~~----~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQ----SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred CCceEEEEEecCCcccchhhh----ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence 57899999988 221111111 12222 2222455 4555555888999999999999988654
No 92
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=54.46 E-value=26 Score=24.89 Aligned_cols=18 Identities=44% Similarity=0.584 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCCcEEEee
Q 045569 319 NEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 319 ~~~~~~yd~~~~~~~~v~ 336 (362)
.++++.||++|++.+.+.
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 468999999999987654
No 93
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=53.73 E-value=44 Score=25.36 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCcEEEEec-----CCeEEEEeCCCCcEEEeeEe--e----ceEEEEEEEecceecc
Q 045569 310 KGAFFVHST-----NEQLLLYDPNTQEMRDLGRK--S----FHFSVHIYRESLIRVK 355 (362)
Q Consensus 310 ~g~il~~~~-----~~~~~~yd~~~~~~~~v~~~--~----~~~~~~~y~~SL~~~~ 355 (362)
+|-++.... ...+++||+++++++.+..+ . .......|..+|.-+.
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~ 61 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVS 61 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEE
Confidence 566655432 46799999999999999885 2 2345677777776654
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.88 E-value=2.1e+02 Score=26.89 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=65.7
Q ss_pred ceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCC-ceeeeecCCCCCCCCCcEE
Q 045569 182 SHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGN-EVFEEIQEPYIPESTPTIL 260 (362)
Q Consensus 182 ~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~-e~~~~i~~P~~~~~~~~~l 260 (362)
..+.||++..+. .+...+.+- +.-..+.+...=||+..... ...|..+|+.. +-|..+++|...+.. ...
T Consensus 369 ~~vkiwdlks~~--~~a~Fpght----~~vk~i~FsENGY~Lat~ad--d~~V~lwDLRKl~n~kt~~l~~~~~v~-s~~ 439 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGHT----GPVKAISFSENGYWLATAAD--DGSVKLWDLRKLKNFKTIQLDEKKEVN-SLS 439 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCCC----CceeEEEeccCceEEEEEec--CCeEEEEEehhhcccceeeccccccce-eEE
Confidence 456777776654 333322211 12455666666799986542 34599999976 567778888754221 111
Q ss_pred EEECCeEEEEEEcCCCCeEEEEEeeC--CeeEEEEEeCCCCCceeeEEEe
Q 045569 261 GIYNHSLCLLLSHNIENYYDIWVMKY--KCWIKQLSLGPLNGVRTPLGFW 308 (362)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~~~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~ 308 (362)
....|....+. ...+.|+..+. .+|.+........+...-+.+.
T Consensus 440 fD~SGt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 440 FDQSGTYLGIA----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred EcCCCCeEEee----cceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 22234433333 35778888876 8999988776433333334443
No 95
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=49.21 E-value=2e+02 Score=25.78 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=66.7
Q ss_pred eEEEEECCC-CCceecccCCCccccccCCcceEEE--Cce-EEEEeeccCCCccEEEEEEcC-Cceeeeec-CCCCCCCC
Q 045569 183 HVAVYSLST-NSWRYCDCFKSNHYYMDGAFDSVYL--DGV-CYWLSEFRDNDHKVILSFHLG-NEVFEEIQ-EPYIPEST 256 (362)
Q Consensus 183 ~~eVyss~~-~~W~~~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~il~fD~~-~e~~~~i~-~P~~~~~~ 256 (362)
.+.+|+..+ +.++.+..... .. ....+.+ +|. +|..... ...|.+|++. +.+++.+. .|.. ..
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~-~~----~~~~l~~spd~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~-~~- 81 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDV-PG----QVQPMVISPDKRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLP-GS- 81 (330)
T ss_pred CEEEEEECCCCceeeeeEEec-CC----CCccEEECCCCCEEEEEECC----CCcEEEEEECCCCceEEeeeecCC-CC-
Confidence 477777754 56665543321 00 1222333 454 4554432 3468888886 45565432 2211 11
Q ss_pred CcEEEE-ECCeEEEEEEcCCCCeEEEEEeeC-Ce-eEEEEEeCCCCCceeeEEEeeCCcEEEEec--CCeEEEEeCCC
Q 045569 257 PTILGI-YNHSLCLLLSHNIENYYDIWVMKY-KC-WIKQLSLGPLNGVRTPLGFWKKGAFFVHST--NEQLLLYDPNT 329 (362)
Q Consensus 257 ~~~l~~-~~g~L~l~~~~~~~~~~~IW~l~~-~~-W~~~~~i~~~~~~~~~~~~~~~g~il~~~~--~~~~~~yd~~~ 329 (362)
...++. -+|+..++... ....+.+|.+++ +. ......+.... -...+.+..+|+.++... ++.+.+||+++
T Consensus 82 p~~i~~~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 82 PTHISTDHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ceEEEECCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 123443 35664444432 467899999974 22 22222222111 112334555666655433 57899999876
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.93 E-value=1.6e+02 Score=27.51 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=53.1
Q ss_pred EEEEEEcCCceee-eecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEE-eCCCCCc-eeeEEEee
Q 045569 233 VILSFHLGNEVFE-EIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLS-LGPLNGV-RTPLGFWK 309 (362)
Q Consensus 233 ~il~fD~~~e~~~-~i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~-i~~~~~~-~~~~~~~~ 309 (362)
.|--|+.++..-+ .|..-.... ..-...+|++.++.. ....+.+|-+++ |..+.. .+..... .--.|+.+
T Consensus 377 ~i~l~~~e~~~dr~lise~~~it---s~~iS~d~k~~LvnL--~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISEEQPIT---SFSISKDGKLALVNL--QDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred ceeeechhhhhhhccccccCcee---EEEEcCCCcEEEEEc--ccCeeEEeecch--hhHHHHhhcccccceEEEeccCC
Confidence 5666666654443 222211111 122345788998887 578999999986 322221 2222221 12234443
Q ss_pred CC-cEEEEec-CCeEEEEeCCCCcEEEee
Q 045569 310 KG-AFFVHST-NEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 310 ~g-~il~~~~-~~~~~~yd~~~~~~~~v~ 336 (362)
.+ +++.... +.+++.|+.++++.-.+-
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEee
Confidence 33 4444433 778999999988865543
No 97
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=47.85 E-value=3.4e+02 Score=28.14 Aligned_cols=180 Identities=10% Similarity=-0.018 Sum_probs=83.1
Q ss_pred ceEEEE--eCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCce
Q 045569 118 NRITLW--NRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWR 195 (362)
Q Consensus 118 ~~~~V~--NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~ 195 (362)
..+++| |+.+|.|..+-+...+..... ......+++.+. + +-+.+.. ...+.+|....+.=.
T Consensus 26 efi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s--~-~f~~~s~------------~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 26 EFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYS--N-HFLTGSE------------QNTVLRYKFPSGEED 89 (933)
T ss_pred CEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecc--c-ceEEeec------------cceEEEeeCCCCCcc
Confidence 346677 778888877655322211100 001234444432 1 2222221 235788887665333
Q ss_pred ecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeee----ecCCCCCCCCCcEEE-EECCeEEEE
Q 045569 196 YCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEE----IQEPYIPESTPTILG-IYNHSLCLL 270 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~----i~~P~~~~~~~~~l~-~~~g~L~l~ 270 (362)
.+=... .+| ...+.++|.=-|++.... ...|-..++.+..-.. ...|. ..|. .-+|.+..+
T Consensus 90 ~iL~Rf-tlp-----~r~~~v~g~g~~iaagsd--D~~vK~~~~~D~s~~~~lrgh~apV------l~l~~~p~~~fLAv 155 (933)
T KOG1274|consen 90 TILARF-TLP-----IRDLAVSGSGKMIAAGSD--DTAVKLLNLDDSSQEKVLRGHDAPV------LQLSYDPKGNFLAV 155 (933)
T ss_pred ceeeee-ecc-----ceEEEEecCCcEEEeecC--ceeEEEEeccccchheeecccCCce------eeeeEcCCCCEEEE
Confidence 221110 122 344455544334443321 3345555554443322 22222 1121 224444333
Q ss_pred EEcCCCCeEEEEEeeC----CeeEEEEEeCCC--CC-ceeeEEEeeCCcEEEEecCCeEEEEeCCC
Q 045569 271 LSHNIENYYDIWVMKY----KCWIKQLSLGPL--NG-VRTPLGFWKKGAFFVHSTNEQLLLYDPNT 329 (362)
Q Consensus 271 ~~~~~~~~~~IW~l~~----~~W~~~~~i~~~--~~-~~~~~~~~~~g~il~~~~~~~~~~yd~~~ 329 (362)
.. ....+.||.+++ ..|..+..-.-. .. +.++-..-++|.+++...++.+.+|+.++
T Consensus 156 ss--~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 156 SS--CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred Ee--cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 33 257899999998 344443321111 11 12222222457888877788899998765
No 98
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.06 E-value=2.3e+02 Score=25.96 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=55.7
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcC--Cceeeee-cCCCCCCCCCcEEEEECCeEEEEEEcCCCC------eEEE
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLG--NEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSHNIEN------YYDI 281 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~--~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~------~~~I 281 (362)
..+...+..+|.-....+ ..-...|+. ...|+.+ ..|-..... ..-+.++|+|++........ .-++
T Consensus 40 G~Ga~ig~~~YVGLGs~G---~afy~ldL~~~~k~W~~~a~FpG~~rnq-a~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~ 115 (381)
T COG3055 40 GAGALIGDTVYVGLGSAG---TAFYVLDLKKPGKGWTKIADFPGGARNQ-AVAAVIGGKLYVFGGYGKSVSSSPQVFNDA 115 (381)
T ss_pred cccceecceEEEEeccCC---ccceehhhhcCCCCceEcccCCCccccc-chheeeCCeEEEeeccccCCCCCceEeeee
Confidence 566777778898776431 234445554 5689887 566554333 35578899999998754221 2366
Q ss_pred EEeeC--CeeEEEEEeCCC
Q 045569 282 WVMKY--KCWIKQLSLGPL 298 (362)
Q Consensus 282 W~l~~--~~W~~~~~i~~~ 298 (362)
++.+. .+|+++.+..|.
T Consensus 116 Y~y~p~~nsW~kl~t~sP~ 134 (381)
T COG3055 116 YRYDPSTNSWHKLDTRSPT 134 (381)
T ss_pred EEecCCCChhheecccccc
Confidence 77766 899999988764
No 99
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=46.69 E-value=1.5e+02 Score=28.86 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=26.9
Q ss_pred ceEeeeeeeeEEEeecCceEEEEeCCCccccc
Q 045569 101 GELVGPYNGIFCIFGNNNRITLWNRATKESRV 132 (362)
Q Consensus 101 ~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~ 132 (362)
..-+..|||||++.+..+.+-.|+|-+++.+.
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhhe
Confidence 55677899999999887789999999998653
No 100
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=46.32 E-value=1.6e+02 Score=25.42 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=24.6
Q ss_pred eCCcEEEEecCCeEEEEeCCCCcEEEeeE
Q 045569 309 KKGAFFVHSTNEQLLLYDPNTQEMRDLGR 337 (362)
Q Consensus 309 ~~g~il~~~~~~~~~~yd~~~~~~~~v~~ 337 (362)
+.|.|++..++..++..|++++++++..-
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 46889999889999999999999887643
No 101
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=45.30 E-value=44 Score=31.86 Aligned_cols=144 Identities=10% Similarity=0.050 Sum_probs=74.4
Q ss_pred EEEeCCCcccccCCCCCcCCCCc--ccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCceecc
Q 045569 121 TLWNRATKESRVLPKCTTVFPKY--TSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCD 198 (362)
Q Consensus 121 ~V~NP~T~~~~~LP~~~~~~~~~--~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~ 198 (362)
..--|.|-.|-++|+........ .........+.+++.++--.+..- +.+ ......+.+|+.+.+.|..+.
T Consensus 232 i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGG---WdG----~~~l~DFW~Y~v~e~~W~~iN 304 (723)
T KOG2437|consen 232 ISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGG---WDG----TQDLADFWAYSVKENQWTCIN 304 (723)
T ss_pred hhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecC---ccc----chhHHHHHhhcCCcceeEEee
Confidence 33456777888777755311100 000111334455554443332222 111 222346899999999999875
Q ss_pred cCC-CccccccCCcceEEECc--eEEEEeeccC-------CCccEEEEEEcCCceeeeecCCCCCCCCC-----cEEEEE
Q 045569 199 CFK-SNHYYMDGAFDSVYLDG--VCYWLSEFRD-------NDHKVILSFHLGNEVFEEIQEPYIPESTP-----TILGIY 263 (362)
Q Consensus 199 ~~~-~~~~~~~~~~~~v~~~G--~lywl~~~~~-------~~~~~il~fD~~~e~~~~i~~P~~~~~~~-----~~l~~~ 263 (362)
... .+-...+ .+.|..-. ++|.+...-+ ..+.-+-.||..+..|..+..-.....+. -.+++.
T Consensus 305 ~~t~~PG~RsC--HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd 382 (723)
T KOG2437|consen 305 RDTEGPGARSC--HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVD 382 (723)
T ss_pred cCCCCCcchhh--hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEe
Confidence 332 1111111 22233222 5666653211 12456899999999999987655433322 345555
Q ss_pred CCe--EEEEEEc
Q 045569 264 NHS--LCLLLSH 273 (362)
Q Consensus 264 ~g~--L~l~~~~ 273 (362)
+.+ +||.++.
T Consensus 383 ~~k~~iyVfGGr 394 (723)
T KOG2437|consen 383 SEKHMIYVFGGR 394 (723)
T ss_pred cCcceEEEecCe
Confidence 555 7777763
No 102
>PLN00181 protein SPA1-RELATED; Provisional
Probab=44.66 E-value=3.8e+02 Score=27.74 Aligned_cols=185 Identities=10% Similarity=0.073 Sum_probs=89.0
Q ss_pred eEEEeecCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEEC
Q 045569 110 IFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSL 189 (362)
Q Consensus 110 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss 189 (362)
+|...+.++.+.|||..+++....-. . +.. ...++.+++..+.+-+.+- . ...+.+|+.
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~--~--H~~-----~V~~l~~~p~~~~~L~Sgs-----~-------Dg~v~iWd~ 605 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMK--E--HEK-----RVWSIDYSSADPTLLASGS-----D-------DGSVKLWSI 605 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEec--C--CCC-----CEEEEEEcCCCCCEEEEEc-----C-------CCEEEEEEC
Confidence 33333556678999988776432111 1 111 1556777664444322221 1 135888887
Q ss_pred CCCC-ceecccCCCccccccCCcceEEE---CceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEEECC
Q 045569 190 STNS-WRYCDCFKSNHYYMDGAFDSVYL---DGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNH 265 (362)
Q Consensus 190 ~~~~-W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g 265 (362)
+++. ...+... .. ...+.+ +|.....+.. ...|..+|+.+..-....+..... ....+...++
T Consensus 606 ~~~~~~~~~~~~---~~-----v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~~~ 672 (793)
T PLN00181 606 NQGVSIGTIKTK---AN-----ICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFVDS 672 (793)
T ss_pred CCCcEEEEEecC---CC-----eEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEeCC
Confidence 7642 1121110 00 111111 2433333322 347888888764311111111110 0023333456
Q ss_pred eEEEEEEcCCCCeEEEEEeeC----CeeEEEEEeCCCCCceeeEEEeeCCcEEEEe-cCCeEEEEeCCCC
Q 045569 266 SLCLLLSHNIENYYDIWVMKY----KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHS-TNEQLLLYDPNTQ 330 (362)
Q Consensus 266 ~L~l~~~~~~~~~~~IW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~-~~~~~~~yd~~~~ 330 (362)
...+.+. ....+.||-+.. ..|.....+.........+++..++.++... .++.+..||..+.
T Consensus 673 ~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 6544444 457899999874 2455555554322222334454556655544 4778999997654
No 103
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.07 E-value=2.1e+02 Score=24.64 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=97.1
Q ss_pred eeeEEEe-ecCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEE
Q 045569 108 NGIFCIF-GNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAV 186 (362)
Q Consensus 108 ~GLl~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eV 186 (362)
+|=-|+. +....+-+|||..+..++-=.... . ...-....+|. =|+-.. .+ ...+.+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG----~---EVlD~~~s~Dn----skf~s~----Gg-------Dk~v~v 85 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG----H---EVLDAALSSDN----SKFASC----GG-------DKAVQV 85 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCC----c---eeeeccccccc----cccccC----CC-------CceEEE
Confidence 4556666 555568999999887653211110 0 00112222332 122111 11 246888
Q ss_pred EECCCC----CceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEE
Q 045569 187 YSLSTN----SWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGI 262 (362)
Q Consensus 187 yss~~~----~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~ 262 (362)
++..|| .||.....-.... .....+|.+.|.+ ...+-++|-.+..+..|+.-....+. ..-..
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~--fNeesSVv~Sgsf----------D~s~r~wDCRS~s~ePiQildea~D~-V~Si~ 152 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVR--FNEESSVVASGSF----------DSSVRLWDCRSRSFEPIQILDEAKDG-VSSID 152 (307)
T ss_pred EEcccCeeeeecccccceeeEEE--ecCcceEEEeccc----------cceeEEEEcccCCCCccchhhhhcCc-eeEEE
Confidence 888886 5654432110010 1124455554432 45799999999999988875554443 34455
Q ss_pred ECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceee---EEEeeCCcEEEEec-CCeEEEEeCCCCcEEE
Q 045569 263 YNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTP---LGFWKKGAFFVHST-NEQLLLYDPNTQEMRD 334 (362)
Q Consensus 263 ~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~---~~~~~~g~il~~~~-~~~~~~yd~~~~~~~~ 334 (362)
..+...+.+.. ..++..+-+..+ ++. .+++..| +++.+++...+... +..+-..|.+|+++-.
T Consensus 153 v~~heIvaGS~--DGtvRtydiR~G------~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 153 VAEHEIVAGSV--DGTVRTYDIRKG------TLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ecccEEEeecc--CCcEEEEEeecc------eee-hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 66777676663 345555555441 111 1233344 34556776655544 6667788888776543
No 104
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=43.87 E-value=2.4e+02 Score=25.22 Aligned_cols=116 Identities=7% Similarity=0.026 Sum_probs=61.6
Q ss_pred ECceEEEEeeccCCCccEEEEEEcC--Cceeee---e-cCCCCCCC-CC-cEEE-EECCeEEEEEEcCCCCeEEEEEeeC
Q 045569 216 LDGVCYWLSEFRDNDHKVILSFHLG--NEVFEE---I-QEPYIPES-TP-TILG-IYNHSLCLLLSHNIENYYDIWVMKY 286 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~--~e~~~~---i-~~P~~~~~-~~-~~l~-~~~g~L~l~~~~~~~~~~~IW~l~~ 286 (362)
-+|...+..... ...|.+||+. ++++.. + ..|..... .+ ..+. .-+|+..++.. .....+.+|.++.
T Consensus 184 pdg~~lyv~~~~---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~-~~~~~I~v~~i~~ 259 (330)
T PRK11028 184 PNQQYAYCVNEL---NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD-RTASLISVFSVSE 259 (330)
T ss_pred CCCCEEEEEecC---CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec-CCCCeEEEEEEeC
Confidence 345444444332 3478888876 334433 3 23432211 11 1222 23565433332 2567999999976
Q ss_pred --CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec--CCeEEEEeC--CCCcEEEee
Q 045569 287 --KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST--NEQLLLYDP--NTQEMRDLG 336 (362)
Q Consensus 287 --~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~--~~~~~~yd~--~~~~~~~v~ 336 (362)
..+.....+... ...+.+.+..+|+.++... ++.+.+|+. +++.++.+.
T Consensus 260 ~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 260 DGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 566666666532 1233456667787666543 566777754 566776655
No 105
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=43.31 E-value=1.1e+02 Score=26.89 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=55.5
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCcEE-EEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCC
Q 045569 233 VILSFHLGNEVFEEIQEPYIPESTPTIL-GIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKG 311 (362)
Q Consensus 233 ~il~fD~~~e~~~~i~~P~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g 311 (362)
.+-+.|+.+-+.... .|..-... ..+ +.-+|.||..+. ....+-+|-|++.+ ..++++... ....+++..+.
T Consensus 173 tvKvWnl~~~~l~~~-~~gh~~~v-~t~~vSpDGslcasGg--kdg~~~LwdL~~~k--~lysl~a~~-~v~sl~fspnr 245 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTT-FIGHSGYV-NTVTVSPDGSLCASGG--KDGEAMLWDLNEGK--NLYSLEAFD-IVNSLCFSPNR 245 (315)
T ss_pred eEEEEccCCcchhhc-cccccccE-EEEEECCCCCEEecCC--CCceEEEEEccCCc--eeEeccCCC-eEeeEEecCCc
Confidence 455666665444322 12111111 223 345899987765 57899999999832 266666543 23455565554
Q ss_pred cEEEEecCCeEEEEeCCCCcEE
Q 045569 312 AFFVHSTNEQLLLYDPNTQEMR 333 (362)
Q Consensus 312 ~il~~~~~~~~~~yd~~~~~~~ 333 (362)
..+....+..+-.||++++...
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVV 267 (315)
T ss_pred eeEeeccCCceEEEeccchhhh
Confidence 4455555777999999988753
No 106
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=42.97 E-value=1.3e+02 Score=29.56 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=58.2
Q ss_pred eEEEEeeccCCCccEEEEEEcCCceeee----ecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEE-E
Q 045569 219 VCYWLSEFRDNDHKVILSFHLGNEVFEE----IQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQ-L 293 (362)
Q Consensus 219 ~lywl~~~~~~~~~~il~fD~~~e~~~~----i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~-~ 293 (362)
.+|...+++ .|.-||.....|+. +.-|...-...+.+.-..|+.++|... ....+..|-++...=.-. .
T Consensus 66 iLavadE~G-----~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas-GDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 66 ILAVADEDG-----GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS-GDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred eEEEecCCC-----ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc-CCceeeeeeeccceeeccee
Confidence 445444444 79999999888871 222322211114555556888888886 578999999998221111 1
Q ss_pred EeCCCCCceeeEEEeeCCcEEEEe--cCCeEEEEeCCCCc
Q 045569 294 SLGPLNGVRTPLGFWKKGAFFVHS--TNEQLLLYDPNTQE 331 (362)
Q Consensus 294 ~i~~~~~~~~~~~~~~~g~il~~~--~~~~~~~yd~~~~~ 331 (362)
.++.. +-...+|+...+..+|+. +++.+.++|.+.+.
T Consensus 140 ~~GH~-~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 140 NLGHT-GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ecccc-cccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 12211 112234444444333332 26667777776655
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=42.96 E-value=2.9e+02 Score=25.99 Aligned_cols=115 Identities=12% Similarity=0.180 Sum_probs=66.9
Q ss_pred EEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEE
Q 045569 214 VYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQL 293 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~ 293 (362)
++=+|-++-.... ...+-.||+.+.. ..-.+|.....- ..+...++--+|+... +...+.+|-|....=.+.+
T Consensus 355 fHpDgLifgtgt~----d~~vkiwdlks~~-~~a~Fpght~~v-k~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGLIFGTGTP----DGVVKIWDLKSQT-NVAKFPGHTGPV-KAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred EcCCceEEeccCC----CceEEEEEcCCcc-ccccCCCCCCce-eEEEeccCceEEEEEe-cCCeEEEEEehhhccccee
Confidence 4445666555443 3478889998877 555677643221 3444444555555554 3456999999872212333
Q ss_pred EeCCCCCceeeEEEeeCCcEEEEec-CCeEEEEeCCCCcEEEee
Q 045569 294 SLGPLNGVRTPLGFWKKGAFFVHST-NEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 294 ~i~~~~~~~~~~~~~~~g~il~~~~-~~~~~~yd~~~~~~~~v~ 336 (362)
.++-... ...+.+...|..+...+ +-.++.|+..+++|.++.
T Consensus 428 ~l~~~~~-v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 428 QLDEKKE-VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ecccccc-ceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 3332111 23344555576665543 456888899999999876
No 108
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=41.86 E-value=1.5e+02 Score=26.75 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=41.3
Q ss_pred CcceEEECceEEEEeeccCCCccEEEEEEcCCceeeee-cCCCCCCCCCcEEEEECCeEEEEEEc
Q 045569 210 AFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSH 273 (362)
Q Consensus 210 ~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~ 273 (362)
..++-..+|.+|.+.... ..+..+|.++++++.+ .+|.... -|+-. |.+.+++..
T Consensus 205 PhSPRWhdgrLwvldsgt----Gev~~vD~~~G~~e~Va~vpG~~r----GL~f~-G~llvVgmS 260 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGR----GELGYVDPQAGKFQPVAFLPGFTR----GLAFA-GDFAFVGLS 260 (335)
T ss_pred CcCCcEeCCeEEEEECCC----CEEEEEcCCCCcEEEEEECCCCCc----cccee-CCEEEEEec
Confidence 366788999999998763 5899999999999877 6776542 24444 888887764
No 109
>PLN02772 guanylate kinase
Probab=40.26 E-value=2e+02 Score=26.86 Aligned_cols=59 Identities=8% Similarity=0.061 Sum_probs=41.4
Q ss_pred EEEEECCeEEEEEEcCCC--CeEEEEEeeC--CeeEEEEEeCCCC--CceeeEEEeeCCcEEEEe
Q 045569 259 ILGIYNHSLCLLLSHNIE--NYYDIWVMKY--KCWIKQLSLGPLN--GVRTPLGFWKKGAFFVHS 317 (362)
Q Consensus 259 ~l~~~~g~L~l~~~~~~~--~~~~IW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~g~il~~~ 317 (362)
..++.++++++++..... ....+|.++. ..|+.-...+..+ .-.+..++.+++.||+..
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 567889999999975432 5789999998 8898866555332 334556666667777665
No 110
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=38.04 E-value=2.6e+02 Score=24.06 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=69.4
Q ss_pred EEEEECCCC-CceecccCCCccccccCCcceEE--ECceEEEEeeccCCCccEEEEEEcC-Cceeeee---cCCCCCCCC
Q 045569 184 VAVYSLSTN-SWRYCDCFKSNHYYMDGAFDSVY--LDGVCYWLSEFRDNDHKVILSFHLG-NEVFEEI---QEPYIPEST 256 (362)
Q Consensus 184 ~eVyss~~~-~W~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~il~fD~~-~e~~~~i---~~P~~~~~~ 256 (362)
+-+||...+ +|........ .... ....+. -+|.+|.+.... ......++.-.. .++|+.. .+|.....
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~-~~~~--~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~- 210 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPD-GQGE--CEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPNSS- 210 (275)
T ss_dssp EEEEESSTTSSEEEEEECEC-SEEE--EEEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCCEE-
T ss_pred EEEEeCCCCceeeccccccc-cCCc--ceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCcccCC-
Confidence 334555544 7988765421 1110 022332 478999887663 112344444444 4678753 45543211
Q ss_pred CcEEEE-ECCeEEEEEEcC-CCCeEEEEEeeC--CeeEEEEEeCCCC--Cc-eeeEEEeeCCcEEE
Q 045569 257 PTILGI-YNHSLCLLLSHN-IENYYDIWVMKY--KCWIKQLSLGPLN--GV-RTPLGFWKKGAFFV 315 (362)
Q Consensus 257 ~~~l~~-~~g~L~l~~~~~-~~~~~~IW~l~~--~~W~~~~~i~~~~--~~-~~~~~~~~~g~il~ 315 (362)
..+.. .+|.+.++.... ....+.|+.-++ ..|.....|.... .. +.-+....+|+|.+
T Consensus 211 -~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 211 -ISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp -EEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred -ceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 33444 467888877732 367899998888 8899988887432 12 33344445666653
No 111
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=37.93 E-value=4e+02 Score=26.17 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=53.4
Q ss_pred ceEEEEeeccCCCccEEEEEEcCCceee-eecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeC
Q 045569 218 GVCYWLSEFRDNDHKVILSFHLGNEVFE-EIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLG 296 (362)
Q Consensus 218 G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~ 296 (362)
--+|..+... .|..||++.++|- .+..-..... ...+.+++|-|+ .......++.|-..+.+ .+.+++
T Consensus 146 cDly~~gsg~-----evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla---~Gt~~g~VEfwDpR~ks--rv~~l~ 214 (703)
T KOG2321|consen 146 CDLYLVGSGS-----EVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLA---CGTEDGVVEFWDPRDKS--RVGTLD 214 (703)
T ss_pred ccEEEeecCc-----ceEEEEccccccccccccccccce-eeeecCccceEE---ecccCceEEEecchhhh--hheeee
Confidence 3466666554 6999999999883 3322211110 023334444443 33357899999887721 112222
Q ss_pred C------CCC---c--eeeEEEeeCCc-EEEEecCCeEEEEeCCCCcE
Q 045569 297 P------LNG---V--RTPLGFWKKGA-FFVHSTNEQLLLYDPNTQEM 332 (362)
Q Consensus 297 ~------~~~---~--~~~~~~~~~g~-il~~~~~~~~~~yd~~~~~~ 332 (362)
. .++ . ...+.+.++|- +-+-...+.++.||+++.+-
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 1 111 1 12233333342 22333477899999987653
No 112
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=37.31 E-value=2.1e+02 Score=24.82 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=32.0
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCCC
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYI 252 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~ 252 (362)
..+-.+.|+||.+..........-.+||+.+++-..+.+|..
T Consensus 174 ~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 174 GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeec
Confidence 567888999999987664345678999999888776655543
No 113
>PF13013 F-box-like_2: F-box-like domain
Probab=36.89 E-value=15 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=23.0
Q ss_pred CCcchHHHHHHHHccCCcccccccccccc
Q 045569 6 DEHFLEETIIEILSKLPVKSLLRFRCICK 34 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK 34 (362)
..+||+||+..|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 45699999999999998887766555555
No 114
>PF15408 PH_7: Pleckstrin homology domain
Probab=36.55 E-value=12 Score=26.10 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=20.2
Q ss_pred ccccccccccccchhhhhCChHHHH
Q 045569 23 VKSLLRFRCICKSWCALFNKHNFIS 47 (362)
Q Consensus 23 ~ksl~r~r~VcK~W~~li~~~~F~~ 47 (362)
++-++..+-|||+|-..+.+|.|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 3456677889999999999998853
No 115
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=33.82 E-value=2.7e+02 Score=22.97 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=31.2
Q ss_pred EEEEEeeC--CeeEEEEEeCCCCCceeeE-EEe-eCCcEEEEec--------CCeEEEEeCCCCcEEEee
Q 045569 279 YDIWVMKY--KCWIKQLSLGPLNGVRTPL-GFW-KKGAFFVHST--------NEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 279 ~~IW~l~~--~~W~~~~~i~~~~~~~~~~-~~~-~~g~il~~~~--------~~~~~~yd~~~~~~~~v~ 336 (362)
=.||..+- .+|. ...|+..+.-..|- ..| .+..|++.-+ ++.|+.||+.+++...+.
T Consensus 88 GkIYIkn~~~~~~~-~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 88 GKIYIKNLNNNNWW-SLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred eeEEEEecCCCceE-EEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 36677664 5552 23344332222332 223 3445544322 678999999999887765
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=33.22 E-value=3.1e+02 Score=23.46 Aligned_cols=183 Identities=15% Similarity=0.063 Sum_probs=85.6
Q ss_pred ecCceEEEEeCCCccccc-CCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCC
Q 045569 115 GNNNRITLWNRATKESRV-LPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNS 193 (362)
Q Consensus 115 ~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~ 193 (362)
.....+.++|+.+++... ++.... ...+.+++..+ +++... .. ...+.+|+.+++.
T Consensus 50 ~~~~~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~g~--~l~~~~---~~-------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 50 SDSDTIQVIDLATGEVIGTLPSGPD-----------PELFALHPNGK--ILYIAN---ED-------DNLVTVIDIETRK 106 (300)
T ss_pred CCCCeEEEEECCCCcEEEeccCCCC-----------ccEEEECCCCC--EEEEEc---CC-------CCeEEEEECCCCe
Confidence 445569999999887543 433211 12345665543 222211 01 1257888887642
Q ss_pred -ceecccCCCccccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeee-ecCCCCCCCCCcEEE-EECCeEEEE
Q 045569 194 -WRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEE-IQEPYIPESTPTILG-IYNHSLCLL 270 (362)
Q Consensus 194 -W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~l~-~~~g~L~l~ 270 (362)
-..++... .+. .-.+.-+|.+.+..... ...+..+|..+.+... +..+... ..+. .-+|+..++
T Consensus 107 ~~~~~~~~~--~~~----~~~~~~dg~~l~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 107 VLAEIPVGV--EPE----GMAVSPDGKIVVNTSET---TNMAHFIDTKTYEIVDNVLVDQRP----RFAEFTADGKELWV 173 (300)
T ss_pred EEeEeeCCC--Ccc----eEEECCCCCEEEEEecC---CCeEEEEeCCCCeEEEEEEcCCCc----cEEEECCCCCEEEE
Confidence 11111100 000 11223356655554432 2245667877654422 2222111 1222 235554433
Q ss_pred EEcCCCCeEEEEEeeCCeeEEEEEeCCC---CCceee--EEEeeCCcEEEE-e-cCCeEEEEeCCCCcEEE
Q 045569 271 LSHNIENYYDIWVMKYKCWIKQLSLGPL---NGVRTP--LGFWKKGAFFVH-S-TNEQLLLYDPNTQEMRD 334 (362)
Q Consensus 271 ~~~~~~~~~~IW~l~~~~W~~~~~i~~~---~~~~~~--~~~~~~g~il~~-~-~~~~~~~yd~~~~~~~~ 334 (362)
... ....+.+|-++.....+....... .....| +.+..+|+.++. . .++.+..||.++++...
T Consensus 174 ~~~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 174 SSE-IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred EcC-CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 332 356899998876332222222111 011122 344566765443 2 35679999998877654
No 117
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=32.75 E-value=1.4e+02 Score=21.72 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=29.1
Q ss_pred eEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEE
Q 045569 119 RITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIF 168 (362)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 168 (362)
+++..+|.+++|...- .. ...+.|..|+..+.|.++...
T Consensus 10 ~v~~~~~~~~~W~~~~-----~~------~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 10 QVYTADPSTGKWVPAS-----GG------TGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EEEEECCCCCceEECC-----CC------eEEEEEEEECCCCEEEEEEEe
Confidence 5889999999997532 11 126888899988999988764
No 118
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=32.28 E-value=3.8e+02 Score=24.20 Aligned_cols=86 Identities=7% Similarity=-0.009 Sum_probs=52.2
Q ss_pred cceEEEC-ceEEEEeeccCC---CccEEEEEEcCCceeeeecCCCC-CCCCCcEEEEE-CCeEEEEEEcCCCCeEEEEEe
Q 045569 211 FDSVYLD-GVCYWLSEFRDN---DHKVILSFHLGNEVFEEIQEPYI-PESTPTILGIY-NHSLCLLLSHNIENYYDIWVM 284 (362)
Q Consensus 211 ~~~v~~~-G~lywl~~~~~~---~~~~il~fD~~~e~~~~i~~P~~-~~~~~~~l~~~-~g~L~l~~~~~~~~~~~IW~l 284 (362)
..++... |.+......... ....++..|=..++|+....+.. .......++++ +|+|.++..........+..-
T Consensus 149 g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S 228 (351)
T cd00260 149 GSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYES 228 (351)
T ss_pred cCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEE
Confidence 4456664 887766543211 12345555556789986554433 22222678888 899988776532456666766
Q ss_pred eC--CeeEEEEEeC
Q 045569 285 KY--KCWIKQLSLG 296 (362)
Q Consensus 285 ~~--~~W~~~~~i~ 296 (362)
+| ..|+......
T Consensus 229 ~D~G~tWs~~~~~~ 242 (351)
T cd00260 229 RDMGTTWTEALGTL 242 (351)
T ss_pred cCCCcCcccCcCCc
Confidence 66 8899876543
No 119
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.16 E-value=28 Score=26.83 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=18.4
Q ss_pred eEEECceEEEEeeccCCCccEEEEEEcCC
Q 045569 213 SVYLDGVCYWLSEFRDNDHKVILSFHLGN 241 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~ 241 (362)
-+.-+|++||+....-.-.-.|+.|+..+
T Consensus 43 Ell~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred HhccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 35558999999865421233677777644
No 120
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=31.72 E-value=4e+02 Score=24.29 Aligned_cols=114 Identities=10% Similarity=0.182 Sum_probs=0.0
Q ss_pred EEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeC--CeeEEEEEeCC
Q 045569 220 CYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKY--KCWIKQLSLGP 297 (362)
Q Consensus 220 lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~--~~W~~~~~i~~ 297 (362)
+|-....+......-..+|..+++.+.+.--...+.....+...+..=.|++..+....+.+.-+++ .-|...-.+..
T Consensus 54 LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h 133 (346)
T COG2706 54 LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH 133 (346)
T ss_pred EEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeec
Q ss_pred CCC---------ceeeEEEeeCCcEEEEec--CCeEEEEeCCCCcEE
Q 045569 298 LNG---------VRTPLGFWKKGAFFVHST--NEQLLLYDPNTQEMR 333 (362)
Q Consensus 298 ~~~---------~~~~~~~~~~g~il~~~~--~~~~~~yd~~~~~~~ 333 (362)
... ..+...+..++++++... .++++.|+++.+++.
T Consensus 134 ~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~ 180 (346)
T COG2706 134 TGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT 180 (346)
T ss_pred CCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc
No 121
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.82 E-value=2.5e+02 Score=23.71 Aligned_cols=36 Identities=6% Similarity=0.074 Sum_probs=26.9
Q ss_pred CCccceEeeeeeeeEEEeecCceEEEEeCCCccccc
Q 045569 97 NPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRV 132 (362)
Q Consensus 97 ~p~~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~ 132 (362)
.+.+...+.+++..|++....+.++|||-.+++...
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 334466777888887777777789999988877643
No 122
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=29.01 E-value=5.5e+02 Score=24.98 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=62.3
Q ss_pred eEEEEECCCCCceecccC-CCccccccCCcceEEECceEEEEee------cc-C----C----CccEEEEEEcCCceeee
Q 045569 183 HVAVYSLSTNSWRYCDCF-KSNHYYMDGAFDSVYLDGVCYWLSE------FR-D----N----DHKVILSFHLGNEVFEE 246 (362)
Q Consensus 183 ~~eVyss~~~~W~~~~~~-~~~~~~~~~~~~~v~~~G~lywl~~------~~-~----~----~~~~il~fD~~~e~~~~ 246 (362)
.+.-.+++|-.|...... ..++|... ..++.+++++|.... +. . . -...+-+.|+++..|..
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSL--Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~t 308 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSL--HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWET 308 (830)
T ss_pred ceeEEecceeecccccccCCCCCCccc--ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheee
Confidence 477888899999976532 12344422 677889999996542 11 0 0 03468899999999987
Q ss_pred ecCCCCCCC-CC-----cEEEEECCeEEEEEEcC--------CCCeEEEEEeeC
Q 045569 247 IQEPYIPES-TP-----TILGIYNHSLCLLLSHN--------IENYYDIWVMKY 286 (362)
Q Consensus 247 i~~P~~~~~-~~-----~~l~~~~g~L~l~~~~~--------~~~~~~IW~l~~ 286 (362)
+-+-...+. .. ...+..+.+|++....+ ..-.-++|.|+.
T Consensus 309 l~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 309 LLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 643221111 00 34566788888877653 122346777765
No 123
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.91 E-value=6.5e+02 Score=25.78 Aligned_cols=116 Identities=8% Similarity=0.088 Sum_probs=0.0
Q ss_pred cceEEECceEEEEeecc-------CCCccEEEEEEcCCceeeeecCCCCCCCCC----------cEEEEECCeEEEEEEc
Q 045569 211 FDSVYLDGVCYWLSEFR-------DNDHKVILSFHLGNEVFEEIQEPYIPESTP----------TILGIYNHSLCLLLSH 273 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~-------~~~~~~il~fD~~~e~~~~i~~P~~~~~~~----------~~l~~~~g~L~l~~~~ 273 (362)
....+..++.||+.... ......+++.+.+++.|....+|....-.. ..+-..++.|++-+.
T Consensus 249 ~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~- 327 (893)
T KOG0291|consen 249 HKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS- 327 (893)
T ss_pred cceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC-
Q ss_pred CCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCcEEEEec-CCeEEEEeCCCC
Q 045569 274 NIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST-NEQLLLYDPNTQ 330 (362)
Q Consensus 274 ~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~-~~~~~~yd~~~~ 330 (362)
....+-||..+.++...+-.-.... ...+.+..||.++.... ++++-+||..++
T Consensus 328 -klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 328 -KLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred -ccceEEEEEeeccceeeeccccccc--eeeEEECCCCcEEEeccCCCcEEEEeccCc
No 124
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=28.91 E-value=5.3e+02 Score=24.78 Aligned_cols=142 Identities=12% Similarity=-0.005 Sum_probs=76.6
Q ss_pred eEEEEECCCCCceecccCCC-c----cccccC----CcceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCC
Q 045569 183 HVAVYSLSTNSWRYCDCFKS-N----HYYMDG----AFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIP 253 (362)
Q Consensus 183 ~~eVyss~~~~W~~~~~~~~-~----~~~~~~----~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 253 (362)
.+.+|+..+++=+.++-..+ . .+.+.. ...-..++|.++-+...+ ....++....- .|+++...
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-----kaFi~~~~~~~--~iqv~~~~ 360 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-----KAFIMRPWDGY--SIQVGKKG 360 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-----cEEEECCCCCe--eEEcCCCC
Confidence 46778888887776654311 1 111110 122356778888887766 45555543332 34554443
Q ss_pred CCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEeeCCcE-EEEecCCeEEEEeCCCCcE
Q 045569 254 ESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAF-FVHSTNEQLLLYDPNTQEM 332 (362)
Q Consensus 254 ~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i-l~~~~~~~~~~yd~~~~~~ 332 (362)
.-...++..... .++........+.|.-.+.. +..++...-+....+.+..+|+. ++......+.++|+++++.
T Consensus 361 ~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 361 GVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred ceEEEEEccCCc--ceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 322233333333 22333334567777776652 33344422122234555667774 5544567899999999998
Q ss_pred EEee
Q 045569 333 RDLG 336 (362)
Q Consensus 333 ~~v~ 336 (362)
+.++
T Consensus 436 ~~id 439 (668)
T COG4946 436 RLID 439 (668)
T ss_pred eEec
Confidence 8776
No 125
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=28.84 E-value=1.2e+02 Score=22.43 Aligned_cols=38 Identities=18% Similarity=0.066 Sum_probs=28.2
Q ss_pred eEEEEeCCCcc-cccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEE
Q 045569 119 RITLWNRATKE-SRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIF 168 (362)
Q Consensus 119 ~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 168 (362)
+++..+|.+++ |... . . ...+.+..|...+.|.|....
T Consensus 17 ~v~~~~p~~~~~W~~~-~-----~------~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 17 QVYQADPDTKRQWSPV-K-----G------TGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEETTTSESEEES-S-----S------EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCcEeeC-C-----e------EEEEEEEEECCCCEEEEEEEE
Confidence 48899999888 9765 1 1 126778889888899888764
No 126
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=27.76 E-value=1.9e+02 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=19.9
Q ss_pred EEEEecCCeEEEEeCCCCcEEEeeEee
Q 045569 313 FFVHSTNEQLLLYDPNTQEMRDLGRKS 339 (362)
Q Consensus 313 il~~~~~~~~~~yd~~~~~~~~v~~~~ 339 (362)
|+.....-.++.||.++++|++.++.|
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG 48 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEG 48 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEe
Confidence 444433445777789999999999988
No 127
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=27.49 E-value=7e+02 Score=25.70 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=59.3
Q ss_pred cEEEEEEcCCceee---eecCCCCCCCCCcEEEEECCe-EEEEEEcCCCCeEEEEEeeC--------CeeEEEEEeCCCC
Q 045569 232 KVILSFHLGNEVFE---EIQEPYIPESTPTILGIYNHS-LCLLLSHNIENYYDIWVMKY--------KCWIKQLSLGPLN 299 (362)
Q Consensus 232 ~~il~fD~~~e~~~---~i~~P~~~~~~~~~l~~~~g~-L~l~~~~~~~~~~~IW~l~~--------~~W~~~~~i~~~~ 299 (362)
.+.-.||.....|. .|..|.+.......+...--. -|+... ....+.||++.+ ..|..+..=....
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~--~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k 509 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS--VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK 509 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec--cCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence 34556677777774 466776543211111111111 333332 468999999955 6798876332211
Q ss_pred CceeeEEEeeCCcEEEEecCCeEEEEeCCC-CcEE
Q 045569 300 GVRTPLGFWKKGAFFVHSTNEQLLLYDPNT-QEMR 333 (362)
Q Consensus 300 ~~~~~~~~~~~g~il~~~~~~~~~~yd~~~-~~~~ 333 (362)
.-....++.++|.++....++.+-.||..+ ++++
T Consensus 510 ~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 510 TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred CcccchhhcCCCcEEEEecCCEEEEecCCChhhhh
Confidence 112344566789999888899999999998 4443
No 128
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=26.75 E-value=4.7e+02 Score=23.49 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=34.9
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEE-ECCeEEEEEEc
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGI-YNHSLCLLLSH 273 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~g~L~l~~~~ 273 (362)
...+-.+|.+|.....+ ...|.+|+++.+....+.+|...... ..++- -...|++....
T Consensus 217 G~~vDadG~lw~~a~~~---g~~v~~~~pdG~l~~~i~lP~~~~t~-~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 217 GMAVDADGNLWVAAVWG---GGRVVRFNPDGKLLGEIKLPVKRPTN-PAFGGPDLNTLYITSAR 276 (307)
T ss_pred ceEEeCCCCEEEecccC---CceEEEECCCCcEEEEEECCCCCCcc-ceEeCCCcCEEEEEecC
Confidence 34466677777433222 23799999998899999999532211 22222 22456665543
No 129
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=25.89 E-value=4.8e+02 Score=23.27 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=55.1
Q ss_pred cEEEEEEcCCc-----eeeee---cCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCe-eEEEEEeCCCCCce
Q 045569 232 KVILSFHLGNE-----VFEEI---QEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKC-WIKQLSLGPLNGVR 302 (362)
Q Consensus 232 ~~il~fD~~~e-----~~~~i---~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~-W~~~~~i~~~~~~~ 302 (362)
..|+.|++.+. ++..+ ..+... ..+...+|+|.+.. ...+.++.++..+ +.+....+... ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V----~ai~~~~~~lv~~~----g~~l~v~~l~~~~~l~~~~~~~~~~-~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPV----TAICSFNGRLVVAV----GNKLYVYDLDNSKTLLKKAFYDSPF-YI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-E----EEEEEETTEEEEEE----TTEEEEEEEETTSSEEEEEEE-BSS-SE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcc----eEhhhhCCEEEEee----cCEEEEEEccCcccchhhheecceE-EE
Confidence 56777777773 44433 222211 56888899954433 4799999999965 88888776432 22
Q ss_pred eeEEEeeCCcEEEEecCC--eEEEEeCCCCcEEEeeE
Q 045569 303 TPLGFWKKGAFFVHSTNE--QLLLYDPNTQEMRDLGR 337 (362)
Q Consensus 303 ~~~~~~~~g~il~~~~~~--~~~~yd~~~~~~~~v~~ 337 (362)
..+... ++.|++..-.. .++.||.+.+++..+.-
T Consensus 133 ~sl~~~-~~~I~vgD~~~sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 133 TSLSVF-KNYILVGDAMKSVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp EEEEEE-TTEEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred EEEecc-ccEEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence 222222 23444443333 35567887777777664
No 130
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=24.33 E-value=1.4e+02 Score=16.44 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCceeeEEEeeCCcEEEEec-CCeEEEEe
Q 045569 289 WIKQLSLGPLNGVRTPLGFWKKGAFFVHST-NEQLLLYD 326 (362)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~g~il~~~~-~~~~~~yd 326 (362)
|..+.++.........+.+..++..++... ++.+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 455566654333334455555666666544 67787776
No 131
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.66 E-value=47 Score=28.90 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCcchHHHHHHHHccCC-ccccccccccccchhhhhCChH
Q 045569 6 DEHFLEETIIEILSKLP-VKSLLRFRCICKSWCALFNKHN 44 (362)
Q Consensus 6 ~~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~~~~ 44 (362)
..+||.+++.+||.||| -.+|.....|=-.-..++++..
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 35799999999999998 5688888777655555555443
No 132
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=23.39 E-value=1.3e+02 Score=28.02 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=45.4
Q ss_pred ccEEEEEEcCCceeeeec-CCCCCCCCCcEEEEECCeEEEEEEcCCCCe--EEEEEeeC---CeeEEEEEeCCCCCceee
Q 045569 231 HKVILSFHLGNEVFEEIQ-EPYIPESTPTILGIYNHSLCLLLSHNIENY--YDIWVMKY---KCWIKQLSLGPLNGVRTP 304 (362)
Q Consensus 231 ~~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~--~~IW~l~~---~~W~~~~~i~~~~~~~~~ 304 (362)
.+.|+..|+.+.+...+- -..-.+. ....-.+..|.+.|....-.. -.||.++. ..|-...+ .......+.
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH--~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHE 243 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGH--VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHE 243 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEE--EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEE
T ss_pred CceEEEEECCCCceeEEEecCccccC--cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccc
Confidence 568999999998887662 2211110 122223455667776432223 37899987 33333222 222122334
Q ss_pred EEEeeCCcEEEEec-----CCeEEEEeCCCCcEEEe
Q 045569 305 LGFWKKGAFFVHST-----NEQLLLYDPNTQEMRDL 335 (362)
Q Consensus 305 ~~~~~~g~il~~~~-----~~~~~~yd~~~~~~~~v 335 (362)
....++..|++... +..+..||++|.+-+.+
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 33332334444322 33589999999876554
No 133
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.17 E-value=7.1e+02 Score=24.32 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=56.2
Q ss_pred ccEEEEEEcCCceeeee-cCCCCCCCCCcEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEEEee
Q 045569 231 HKVILSFHLGNEVFEEI-QEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWK 309 (362)
Q Consensus 231 ~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 309 (362)
...|+.+++...+...- .--...+. ......+.++..+........++.|..++..=..+..-. +.....+|+..
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~--v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~~~sl~is~ 154 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGN--VNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPLVSSLCISP 154 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCc--ceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCccceEEEcC
Confidence 34688888877766432 21111111 233344555554444445678899998882111111111 12345667777
Q ss_pred CCcEEEEecCCeEEEEeCCCCcEE
Q 045569 310 KGAFFVHSTNEQLLLYDPNTQEMR 333 (362)
Q Consensus 310 ~g~il~~~~~~~~~~yd~~~~~~~ 333 (362)
+|++++.. .+.+-.||.+++++.
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVV 177 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEE
Confidence 88888864 678999999998753
No 134
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.40 E-value=7.5e+02 Score=26.03 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=43.1
Q ss_pred EEEEECC--eEEEEEEcCCCCeEEEEEeeC------------CeeEEEEE--eCCC-----CCc-------eeeEEEeeC
Q 045569 259 ILGIYNH--SLCLLLSHNIENYYDIWVMKY------------KCWIKQLS--LGPL-----NGV-------RTPLGFWKK 310 (362)
Q Consensus 259 ~l~~~~g--~L~l~~~~~~~~~~~IW~l~~------------~~W~~~~~--i~~~-----~~~-------~~~~~~~~~ 310 (362)
.-+..++ .|.+... +...+.||-|+. .-|..... +++. .++ ++|..+..+
T Consensus 254 ssvlfhp~q~lIlSns--EDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~ 331 (1202)
T KOG0292|consen 254 SSVLFHPHQDLILSNS--EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNG 331 (1202)
T ss_pred ceEEecCccceeEecC--CCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcC
Confidence 3344444 4544443 678999999987 23666554 3321 111 466666655
Q ss_pred CcEEEEecCCeEEEEeCCCCc
Q 045569 311 GAFFVHSTNEQLLLYDPNTQE 331 (362)
Q Consensus 311 g~il~~~~~~~~~~yd~~~~~ 331 (362)
+.+++.. +..+..||+.|.+
T Consensus 332 n~LfYvk-d~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 332 NGLFYVK-DRFIRSYDLRTQK 351 (1202)
T ss_pred CEEEEEc-cceEEeeeccccc
Confidence 6666665 7889999998854
No 135
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.36 E-value=5.2e+02 Score=22.47 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=59.8
Q ss_pred ceEEEEeeccCCCccEEEEEEcCCceeeee-cCCCCCCCCCcEEE---EECCeEEEEEEcCCCCeEEEEEeeCCeeEEEE
Q 045569 218 GVCYWLSEFRDNDHKVILSFHLGNEVFEEI-QEPYIPESTPTILG---IYNHSLCLLLSHNIENYYDIWVMKYKCWIKQL 293 (362)
Q Consensus 218 G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~l~---~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~ 293 (362)
|.+..... ...|...|+++++++.. .--. ++...+ +.++++ + .. .+...+.||-++.+.= +.
T Consensus 127 nSi~~AgG-----D~~~y~~dlE~G~i~r~~rGHt----DYvH~vv~R~~~~qi-l-sG-~EDGtvRvWd~kt~k~--v~ 192 (325)
T KOG0649|consen 127 NSILFAGG-----DGVIYQVDLEDGRIQREYRGHT----DYVHSVVGRNANGQI-L-SG-AEDGTVRVWDTKTQKH--VS 192 (325)
T ss_pred CcEEEecC-----CeEEEEEEecCCEEEEEEcCCc----ceeeeeeecccCcce-e-ec-CCCccEEEEeccccce--eE
Confidence 45555443 34899999999999764 3211 112222 334443 2 22 2678999999987322 22
Q ss_pred EeCCC--CCcee------eEEEeeCCcEEEEecCCeEEEEeCCCCcEE-EeeEee
Q 045569 294 SLGPL--NGVRT------PLGFWKKGAFFVHSTNEQLLLYDPNTQEMR-DLGRKS 339 (362)
Q Consensus 294 ~i~~~--~~~~~------~~~~~~~g~il~~~~~~~~~~yd~~~~~~~-~v~~~~ 339 (362)
.|.+. +...+ ..+...+.+-+++.++.++-.|++.+.+-. .+.|++
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEeccc
Confidence 33321 11112 233334555666666778999998876543 344554
No 136
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=22.28 E-value=1e+03 Score=25.81 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=63.3
Q ss_pred cceEEE--Cce-EEEEeeccCCCccEEEEEEcCCceeeeec-----CCCCC---C-----------CCCcEE-EEECCeE
Q 045569 211 FDSVYL--DGV-CYWLSEFRDNDHKVILSFHLGNEVFEEIQ-----EPYIP---E-----------STPTIL-GIYNHSL 267 (362)
Q Consensus 211 ~~~v~~--~G~-lywl~~~~~~~~~~il~fD~~~e~~~~i~-----~P~~~---~-----------~~~~~l-~~~~g~L 267 (362)
..++.+ +|. +|..... ...|..||+.+.....+- .|... + .....+ ...+|.|
T Consensus 742 P~GIavspdG~~LYVADs~----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L 817 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI 817 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcE
Confidence 344444 354 7766544 358999998865433211 01100 0 011122 2346778
Q ss_pred EEEEEcCCCCeEEEEEeeCCeeEEEEEeCC---------CCCceee--EEEeeCCcEEEEec-CCeEEEEeCCCCcE
Q 045569 268 CLLLSHNIENYYDIWVMKYKCWIKQLSLGP---------LNGVRTP--LGFWKKGAFFVHST-NEQLLLYDPNTQEM 332 (362)
Q Consensus 268 ~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~---------~~~~~~~--~~~~~~g~il~~~~-~~~~~~yd~~~~~~ 332 (362)
+++.. ....+.+|-.+............ ...+..| +++..+|.+|+... ++.+..+|+++++.
T Consensus 818 YVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 818 YVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 77665 46788888876633332221110 0012234 45556788888765 66799999999875
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=22.24 E-value=5e+02 Score=25.10 Aligned_cols=100 Identities=7% Similarity=0.032 Sum_probs=52.6
Q ss_pred ccEEEEEEcCCc--eeeeecCCCCCCCCC--cEEEEECCeEEEEEEcCCCCeEEEEEeeCCeeEEEEEeCCCCCceeeEE
Q 045569 231 HKVILSFHLGNE--VFEEIQEPYIPESTP--TILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLG 306 (362)
Q Consensus 231 ~~~il~fD~~~e--~~~~i~~P~~~~~~~--~~l~~~~g~L~l~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~ 306 (362)
...|-+.|+... ++-.-+|+....+.+ .....-+|+-.+++. ...++.||-|....=..+..+.....-...+.
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG--eastlsiWDLAapTprikaeltssapaCyALa 516 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYALA 516 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc--ccceeeeeeccCCCcchhhhcCCcchhhhhhh
Confidence 346777777643 222224443322222 233344677656665 47899999997722111111221111123344
Q ss_pred EeeCCcEEEEe-cCCeEEEEeCCCCcE
Q 045569 307 FWKKGAFFVHS-TNEQLLLYDPNTQEM 332 (362)
Q Consensus 307 ~~~~g~il~~~-~~~~~~~yd~~~~~~ 332 (362)
+..|.++.|.. .++.+.+||+..+.+
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cCCccceeeeeccCCcEEEEEccccee
Confidence 44566776654 477888888877664
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=21.80 E-value=2.8e+02 Score=26.63 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=38.5
Q ss_pred CCCeEEEEEeeC----CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec--CCeEEEEeCCCCcEE
Q 045569 275 IENYYDIWVMKY----KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST--NEQLLLYDPNTQEMR 333 (362)
Q Consensus 275 ~~~~~~IW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~--~~~~~~yd~~~~~~~ 333 (362)
....+.+|-.+. ..|.+.+.-+. +-+|+...++.++..- +.++..||...++..
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~-----~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPC-----RGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCc-----CcceecCCccceEEEecccceEEEeeccccccc
Confidence 356899999987 67888887663 3456665566555442 788999999887654
No 139
>PRK05137 tolB translocation protein TolB; Provisional
Probab=21.77 E-value=6.8e+02 Score=23.54 Aligned_cols=187 Identities=12% Similarity=0.029 Sum_probs=88.6
Q ss_pred CceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcceEEEEECCCCCcee
Q 045569 117 NNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRY 196 (362)
Q Consensus 117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~eVyss~~~~W~~ 196 (362)
...++++|+.|++...+...+.. .....+.|..+. -++... .+. ...+.+++.+++.-+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~----------~~~~~~SPDG~~-la~~~~---~~g------~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM----------TFAPRFSPDGRK-VVMSLS---QGG------NTDIYTMDLRSGTTTR 284 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc----------ccCcEECCCCCE-EEEEEe---cCC------CceEEEEECCCCceEE
Confidence 35799999999887766533221 223444553322 222221 111 2356777888776666
Q ss_pred cccCCCccccccCCcceEEECce-EEEEeeccCCCccEEEEEEcCCceeeeecCCCCCCCCCcEEEEECCe-EEEEEEcC
Q 045569 197 CDCFKSNHYYMDGAFDSVYLDGV-CYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHS-LCLLLSHN 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~-L~l~~~~~ 274 (362)
+..... ... .....-+|. +++...... ...|..+|+.++..+.+......... ... .-+|+ |+++...
T Consensus 285 Lt~~~~-~~~----~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~lt~~~~~~~~-~~~-SpdG~~ia~~~~~- 354 (435)
T PRK05137 285 LTDSPA-IDT----SPSYSPDGSQIVFESDRSG--SPQLYVMNADGSNPRRISFGGGRYST-PVW-SPRGDLIAFTKQG- 354 (435)
T ss_pred ccCCCC-ccC----ceeEcCCCCEEEEEECCCC--CCeEEEEECCCCCeEEeecCCCcccC-eEE-CCCCCEEEEEEcC-
Confidence 543221 110 122223443 444432221 34688888888777665332111110 111 23454 4444432
Q ss_pred CCCeEEEEEeeC-CeeEEEEEeCCCCCceeeEEEeeCCcE-EEEec-C-----CeEEEEeCCCCcEEEeeE
Q 045569 275 IENYYDIWVMKY-KCWIKQLSLGPLNGVRTPLGFWKKGAF-FVHST-N-----EQLLLYDPNTQEMRDLGR 337 (362)
Q Consensus 275 ~~~~~~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i-l~~~~-~-----~~~~~yd~~~~~~~~v~~ 337 (362)
.....||+++- ....+.. ........|. +..+|+. ++... . ..++.+|++++..+.+..
T Consensus 355 -~~~~~i~~~d~~~~~~~~l--t~~~~~~~p~-~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 355 -GGQFSIGVMKPDGSGERIL--TSGFLVEGPT-WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred -CCceEEEEEECCCCceEec--cCCCCCCCCe-ECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 23345666553 2222222 1111223333 3446654 44332 1 369999998887776653
No 140
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.43 E-value=6.1e+02 Score=22.92 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=46.2
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCcee-eeecCCCCCCCCCcEEEEECCeE---EEEEEcCCCCeEEEEEeeC
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVF-EEIQEPYIPESTPTILGIYNHSL---CLLLSHNIENYYDIWVMKY 286 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~g~L---~l~~~~~~~~~~~IW~l~~ 286 (362)
-.+|.++|-. ..... +...|-.||+.+..= ..+--|... .......+.+ .|+... ....|.||..
T Consensus 46 itavAVs~~~-~aSGs---sDetI~IYDm~k~~qlg~ll~Hags----itaL~F~~~~S~shLlS~s-dDG~i~iw~~-- 114 (362)
T KOG0294|consen 46 ITALAVSGPY-VASGS---SDETIHIYDMRKRKQLGILLSHAGS----ITALKFYPPLSKSHLLSGS-DDGHIIIWRV-- 114 (362)
T ss_pred eeEEEeccee-EeccC---CCCcEEEEeccchhhhcceeccccc----eEEEEecCCcchhheeeec-CCCcEEEEEc--
Confidence 5567777742 22222 256899999876533 222222111 1222222322 344443 4678899987
Q ss_pred CeeEEEEEeCCCCCceeeEEEeeCCcE
Q 045569 287 KCWIKQLSLGPLNGVRTPLGFWKKGAF 313 (362)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (362)
++|....++.....-...+.++..|++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KL 141 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKL 141 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCce
Confidence 558877777643222223333444444
No 141
>PTZ00420 coronin; Provisional
Probab=21.27 E-value=8.2e+02 Score=24.30 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=55.0
Q ss_pred cEEEEEEcCCceee-eecCCCCCCCCC-cEEEE--ECCeEEEEEEcC--CCCeEEEEEeeC-CeeEEEEEeCCCCCceee
Q 045569 232 KVILSFHLGNEVFE-EIQEPYIPESTP-TILGI--YNHSLCLLLSHN--IENYYDIWVMKY-KCWIKQLSLGPLNGVRTP 304 (362)
Q Consensus 232 ~~il~fD~~~e~~~-~i~~P~~~~~~~-~~l~~--~~g~L~l~~~~~--~~~~~~IW~l~~-~~W~~~~~i~~~~~~~~~ 304 (362)
..|..+|+.+++-. .+.......... ..+.. .++...+.+... ..+.+.||-++. ..-.....++.......|
T Consensus 189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p 268 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP 268 (568)
T ss_pred CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence 36888999876542 222221110000 11111 234444443322 235899999986 433333344433232344
Q ss_pred EEEeeCCcEEEEe-cCCeEEEEeCCCCcEEEee
Q 045569 305 LGFWKKGAFFVHS-TNEQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 305 ~~~~~~g~il~~~-~~~~~~~yd~~~~~~~~v~ 336 (362)
.....+|.+|+.. +++.+.+|+..++.+..+.
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 4444457777655 4788999999887665554
No 142
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=20.78 E-value=3.8e+02 Score=23.20 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=48.7
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCcEEEEECCeEEEEEEcC-CCCeEEEEEeeC----CeeEEEEE-eCCCCCceeeEE
Q 045569 233 VILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHN-IENYYDIWVMKY----KCWIKQLS-LGPLNGVRTPLG 306 (362)
Q Consensus 233 ~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~l~~~~~-~~~~~~IW~l~~----~~W~~~~~-i~~~~~~~~~~~ 306 (362)
.-..||+.+.+++.+.++...-.. .....-+|+|..++... ....+++..-.. ..|..... +.. ..++....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCS-gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCS-GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCccc-CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccce
Confidence 356789999999988776443221 12223467777666542 334555555432 46877653 332 23333444
Q ss_pred EeeCCcEEEEec
Q 045569 307 FWKKGAFFVHST 318 (362)
Q Consensus 307 ~~~~g~il~~~~ 318 (362)
...+|++++..+
T Consensus 125 ~L~DG~vlIvGG 136 (243)
T PF07250_consen 125 TLPDGRVLIVGG 136 (243)
T ss_pred ECCCCCEEEEeC
Confidence 556899988865
No 143
>smart00284 OLF Olfactomedin-like domains.
Probab=20.70 E-value=4.4e+02 Score=23.01 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=29.4
Q ss_pred cceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecCCCC
Q 045569 211 FDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYI 252 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~ 252 (362)
..+-.+.|+||............-.+||+.+++-..+.+|..
T Consensus 179 ~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~ 220 (255)
T smart00284 179 SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFE 220 (255)
T ss_pred cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeec
Confidence 567888899999975332235678999998876655544443
No 144
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.59 E-value=1.4e+02 Score=19.52 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=18.2
Q ss_pred eCCcEEEEecC--CeEEEEeCCCCcEEEee
Q 045569 309 KKGAFFVHSTN--EQLLLYDPNTQEMRDLG 336 (362)
Q Consensus 309 ~~g~il~~~~~--~~~~~yd~~~~~~~~v~ 336 (362)
+++.+-+...+ -+++.||++++++.-+.
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDEDTNEITLKK 57 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEETTTTEEEEEE
T ss_pred cCCEEEEEecCCeEEEEEeCCCCCeEEEEE
Confidence 35555444223 36999999999987554
No 145
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.11 E-value=6.2e+02 Score=22.44 Aligned_cols=108 Identities=9% Similarity=0.090 Sum_probs=61.1
Q ss_pred cceEEEEECCCCCceecccCCC-cc-ccccCCcceEEECceEEEEeeccCCCccEEEEEEcCCceeeeecC-C-CCCCCC
Q 045569 181 FSHVAVYSLSTNSWRYCDCFKS-NH-YYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQE-P-YIPEST 256 (362)
Q Consensus 181 ~~~~eVyss~~~~W~~~~~~~~-~~-~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~-P-~~~~~~ 256 (362)
...+.+|+..+.+|......-. .. ...+....-+.+.|.+-.-.. ....+..||+.+.+|..+.. . ......
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~----~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT----NSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC----CceeEEEEecCCCeeeecCCcccccCCCc
Confidence 4579999999999998865421 01 001112555667775554331 25689999999999987754 2 111111
Q ss_pred CcEEEE---ECCeEEEEEEc-CCCCeEEEEEeeCCeeEEEEE
Q 045569 257 PTILGI---YNHSLCLLLSH-NIENYYDIWVMKYKCWIKQLS 294 (362)
Q Consensus 257 ~~~l~~---~~g~L~l~~~~-~~~~~~~IW~l~~~~W~~~~~ 294 (362)
...+.. -...+.+.+.. .....+.-| +..+|...-.
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 112222 22345555543 123344444 6688988765
Done!