BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045571
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 39 GSIP-SAIFTMYTLKYVSFRENQLSGAFPSFIFN-KSSLQHLDFSQNTLSGEIPANICSN 96
G +P + M LK + N+ SG P + N +SL LD S N SG I N+C N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 97 LP-FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
L+ + L N F G IP LS C+ L L LSFN SG IP +G+L+KL +L L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215
N L+GEIP+E + LE + L ++L G IP L N L + L N LTGEIP+
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 216 NLAKLEMMSLSENNLQGVI 234
L L ++ LS N+ G I
Sbjct: 512 RLENLAILKLSNNSFSGNI 530
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 50 TLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNM 109
TL+ + + N +G P + N S L L S N LSG IP+++ S L L + L NM
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 453
Query: 110 FHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSL 169
G IP L L+ L L FND +G IP + N T L + L NRL GEIP+ G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 170 AELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIP 211
L ++ L ++ G IP ELG+ L L L N G IP
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANI--CSN 96
G IPS + L ++S N+L+G P +I +L L S N+ SG IPA + C +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 97 LPFLEYISLSKNMFHGGIPSAL--------------SKCTYLQ----------------- 125
L +L+ L+ N+F+G IP+A+ + Y++
Sbjct: 540 LIWLD---LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 126 --ILSLSFNDFSGAIPKDI-------------GNLTKLMELYLGRNRLQGEIPREFGSLA 170
I S N S P +I N +M L + N L G IP+E GS+
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 171 ELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNL 230
L +++L +++ G IP E+G+L L +L L N L G IP+ S L L + LS NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 231 QGVIINFLQF 240
G I QF
Sbjct: 717 SGPIPEMGQF 726
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 40/238 (16%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
G AI T LK ++ NQ G P SLQ+L ++N +GEIP +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 99 FLEYISLSKNMFHGGIP-------------------------SALSKCTYLQILSLSFND 133
L + LS N F+G +P L K L++L LSFN+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 134 FSGAIPKDIGNLT-KLMELYLGRNRLQGEI-------PREFGSLAELELMSLRESNLQGG 185
FSG +P+ + NL+ L+ L L N G I P+ L+ + L+ + G
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-----TLQELYLQNNGFTGK 409
Query: 186 IPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSS 243
IP L N ++L L L N L+G IP +L+KL + L N L+G I L + +
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 97/246 (39%), Gaps = 45/246 (18%)
Query: 12 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFN 71
+LTG IP G IP I + L + N SG P+ + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 72 KSSLQHLDFSQNTLSGEIPA-------NICSN-LPFLEYISLS----KNMFHG------- 112
SL LD + N +G IPA I +N + Y+ + K HG
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 113 -GI------------PSALSKCTY-------------LQILSLSFNDFSGAIPKDIGNLT 146
GI P ++ Y + L +S+N SG IPK+IG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 147 KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNL 206
L L LG N + G IP E G L L ++ L + L G IPQ + L L + L NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 207 TGEIPR 212
+G IP
Sbjct: 717 SGPIPE 722
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 101/243 (41%), Gaps = 52/243 (21%)
Query: 43 SAIFTMYTLKYVSFRENQLSGA-FPSFIFNKS--SLQHLDFSQNTLSGEIPANICSNLPF 99
S + +L+ + N +SGA ++ + L+HL S N +SG++ + C NL F
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204
Query: 100 LE--------------------YISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP 139
L+ ++ +S N G A+S CT L++L++S N F G IP
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 140 KDIGNLTKLMELYLGRNRLQGEIPREF-GSLAELELMSLRESNLQGGIPQELG------- 191
L L L L N+ GEIP G+ L + L ++ G +P G
Sbjct: 265 PLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 192 ------------------NLAKLEMLQLFQNNLTGEIPREFSNL-AKLEMMSLSENNLQG 232
+ L++L L N +GE+P +NL A L + LS NN G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 233 VII 235
I+
Sbjct: 383 PIL 385
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 73 SSLQHLDFSQNTLSGEIPA----NICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILS 128
+SL LD S+N+LSG + CS L FL S + + F G + L K L++L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-FPGKVSGGL-KLNSLEVLD 157
Query: 129 LSFNDFSGAIPKDIG-----NLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LS N SGA +G +L L + N++ G++ + LE + + +N
Sbjct: 158 LSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVI 234
GIP LG+ + L+ L + N L+G+ R S +L+++++S N G I
Sbjct: 214 TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 39 GSIP-SAIFTMYTLKYVSFRENQLSGAFPSFIFN-KSSLQHLDFSQNTLSGEIPANICSN 96
G +P + M LK + N+ SG P + N +SL LD S N SG I N+C N
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 97 LP-FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
L+ + L N F G IP LS C+ L L LSFN SG IP +G+L+KL +L L
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215
N L+GEIP+E + LE + L ++L G IP L N L + L N LTGEIP+
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 216 NLAKLEMMSLSENNLQGVI 234
L L ++ LS N+ G I
Sbjct: 509 RLENLAILKLSNNSFSGNI 527
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 50 TLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNM 109
TL+ + + N +G P + N S L L S N LSG IP+++ S L L + L NM
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 450
Query: 110 FHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSL 169
G IP L L+ L L FND +G IP + N T L + L NRL GEIP+ G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 170 AELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIP 211
L ++ L ++ G IP ELG+ L L L N G IP
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANI--CSN 96
G IPS + L ++S N+L+G P +I +L L S N+ SG IPA + C +
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 97 LPFLEYISLSKNMFHGGIPSAL--------------SKCTYLQ----------------- 125
L +L+ L+ N+F+G IP+A+ + Y++
Sbjct: 537 LIWLD---LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 126 --ILSLSFNDFSGAIPKDI-------------GNLTKLMELYLGRNRLQGEIPREFGSLA 170
I S N S P +I N +M L + N L G IP+E GS+
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 171 ELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNL 230
L +++L +++ G IP E+G+L L +L L N L G IP+ S L L + LS NNL
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 231 QGVIINFLQF 240
G I QF
Sbjct: 714 SGPIPEMGQF 723
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 40/238 (16%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
G AI T LK ++ NQ G P SLQ+L ++N +GEIP +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 99 FLEYISLSKNMFHGGIP-------------------------SALSKCTYLQILSLSFND 133
L + LS N F+G +P L K L++L LSFN+
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 134 FSGAIPKDIGNLT-KLMELYLGRNRLQGEI-------PREFGSLAELELMSLRESNLQGG 185
FSG +P+ + NL+ L+ L L N G I P+ L+ + L+ + G
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-----TLQELYLQNNGFTGK 406
Query: 186 IPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSS 243
IP L N ++L L L N L+G IP +L+KL + L N L+G I L + +
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 97/246 (39%), Gaps = 45/246 (18%)
Query: 12 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFN 71
+LTG IP G IP I + L + N SG P+ + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 72 KSSLQHLDFSQNTLSGEIPA-------NICSN-LPFLEYISLS----KNMFHG------- 112
SL LD + N +G IPA I +N + Y+ + K HG
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 113 -GI------------PSALSKCTY-------------LQILSLSFNDFSGAIPKDIGNLT 146
GI P ++ Y + L +S+N SG IPK+IG++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 147 KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNL 206
L L LG N + G IP E G L L ++ L + L G IPQ + L L + L NNL
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 207 TGEIPR 212
+G IP
Sbjct: 714 SGPIPE 719
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 101/243 (41%), Gaps = 52/243 (21%)
Query: 43 SAIFTMYTLKYVSFRENQLSGA-FPSFIFNKS--SLQHLDFSQNTLSGEIPANICSNLPF 99
S + +L+ + N +SGA ++ + L+HL S N +SG++ + C NL F
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 201
Query: 100 LE--------------------YISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP 139
L+ ++ +S N G A+S CT L++L++S N F G IP
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 140 KDIGNLTKLMELYLGRNRLQGEIPREF-GSLAELELMSLRESNLQGGIPQELG------- 191
L L L L N+ GEIP G+ L + L ++ G +P G
Sbjct: 262 PLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 192 ------------------NLAKLEMLQLFQNNLTGEIPREFSNL-AKLEMMSLSENNLQG 232
+ L++L L N +GE+P +NL A L + LS NN G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 233 VII 235
I+
Sbjct: 380 PIL 382
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 73 SSLQHLDFSQNTLSGEIPA----NICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILS 128
+SL LD S+N+LSG + CS L FL +S + F G + L K L++L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN-VSSNTLDFPGKVSGGL-KLNSLEVLD 154
Query: 129 LSFNDFSGA-----IPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LS N SGA + D +L L + N++ G++ + LE + + +N
Sbjct: 155 LSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVI 234
GIP LG+ + L+ L + N L+G+ R S +L+++++S N G I
Sbjct: 211 TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 11/226 (4%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
G IP AI + L Y+ +SGA P F+ +L LDFS N LSG +P +I S+LP
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLP 149
Query: 99 FLEYISLSKNMFHGGIPSALSKCTYL-QILSLSFNDFSGAIPKDIGNLTKLMELYLGRNR 157
L I+ N G IP + + L +++S N +G IP NL L + L RN
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208
Query: 158 LQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL 217
L+G+ FGS + + L +++L + ++G L L L N + G +P+ + L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 218 AKLEMMSLSENNLQGVII---NFLQF----YSSSACFCNLYSFACS 256
L +++S NNL G I N +F Y+++ C C AC+
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI 142
N L G IP I + L L Y+ ++ G IP LS+ L L S+N SG +P I
Sbjct: 87 NNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 143 GNLTKLMELYLGRNRLQGEIPREFGSLAEL-ELMSLRESNLQGGIPQELGNLAKLEMLQL 201
+L L+ + NR+ G IP +GS ++L M++ + L G IP NL L + L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 202 FQNNLTGEIPREFSNLAKLEMMSLSENNL 230
+N L G+ F + + + L++N+L
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 138 IPKDIGNLTKLMELYLGR-NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKL 196
IP + NL L LY+G N L G IP L +L + + +N+ G IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 197 EMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVI 234
L N L+G +P S+L L ++ N + G I
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 138 IPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGG---------IPQ 188
I KD+GN T L +L G L + + + R +NL IP
Sbjct: 14 IKKDLGNPTTLSS-WLPTTDCCNRT--WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70
Query: 189 ELGNLAKLEMLQLFQ-NNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFL 238
L NL L L + NNL G IP + L +L + ++ N+ G I +FL
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 5/190 (2%)
Query: 40 SIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNLP 98
+IPS I K + + N+LS + PS F++ + L+ L + N L +PA I L
Sbjct: 30 AIPSNIPA--DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 99 FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158
LE + ++ N + L L L N P+ +LTKL L LG N L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 159 QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA 218
Q F L L+ + L + L+ L +L+ L+L N L F +L
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 219 KLEMMSLSEN 228
KL+M+ L EN
Sbjct: 206 KLKMLQLQEN 215
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAEL 172
IPS + T + L L N S K LTKL LYL N+LQ F L L
Sbjct: 30 AIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 173 ELMSLRESNLQG---GIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENN 229
E + + ++ LQ G+ +L NLA+ L+L +N L PR F +L KL +SL N
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAE---LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 230 LQGV 233
LQ +
Sbjct: 145 LQSL 148
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 33/211 (15%)
Query: 43 SAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102
SA+ + +L+ +SF NQ++ P + N ++L+ LD S N +S ++ + L LE
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 103 ISLSKNMFHGGIP--------------------SALSKCTYLQILSLSFNDFSGAIPKDI 142
+ + N P L+ T L L L+ N S P +
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 143 GNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLF 202
LTKL EL LG N++ P L L + L E+ L+ P + NL L L L+
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 313
Query: 203 QNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233
NN++ P S+L KL+ + S N + V
Sbjct: 314 FNNISDISP--VSSLTKLQRLFFSNNKVSDV 342
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 107 KNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPRE- 165
++ H +P+ + T QIL L N + P +L L ELYLG N+L G +P
Sbjct: 27 RSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 166 FGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSL 225
F SL +L ++ L + L L L+ L + N LT E+PR L L ++L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 226 SENNLQGV---IINFLQFYSSSACFCNLYSFACSLIM 259
+N L+ + + L + + F N + C IM
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
S+P+ I T + Y +NQ++ P + +L+ L N L G +P + +L
Sbjct: 32 ASVPAGIPTNAQILY--LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 99 FLEYISLSKNMFHGGIPSAL-SKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNR 157
L + L N +PSA+ + +L+ L + N + +P+ I LT L L L +N+
Sbjct: 89 QLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 158 LQGEIPREFGSLAEL 172
L+ F L+ L
Sbjct: 147 LKSIPHGAFDRLSSL 161
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 33/201 (16%)
Query: 43 SAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102
SA+ + +L+ +SF NQ++ P + N ++L+ LD S N +S ++ + L LE
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 103 ISLSKNMFHGGIP--------------------SALSKCTYLQILSLSFNDFSGAIPKDI 142
+ + N P L+ T L L L+ N S P +
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 143 GNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLF 202
LTKL EL LG N++ P L L + L E+ L+ P + NL L L L+
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 313
Query: 203 QNNLTGEIPREFSNLAKLEMM 223
NN++ P S+L KL+ +
Sbjct: 314 FNNISDISP--VSSLTKLQRL 332
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 48 MYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSK 107
+ TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+
Sbjct: 171 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNG 225
Query: 108 NMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFG 167
N L+ T L L L+ N S P + LTKL EL LG N++ P
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 168 SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSE 227
L L + L E+ L+ P + NL L L L+ NN++ P S+L KL+ + S
Sbjct: 280 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSN 335
Query: 228 NNLQGV 233
N + V
Sbjct: 336 NKVSDV 341
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 33/201 (16%)
Query: 43 SAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102
SA+ + +L+ ++F NQ++ P + N ++L+ LD S N +S ++ + L LE
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 103 ISLSKNMFHGGIP--------------------SALSKCTYLQILSLSFNDFSGAIPKDI 142
+ + N P L+ T L L L+ N S P +
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 143 GNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLF 202
LTKL EL LG N++ P L L + L E+ L+ P + NL L L L+
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 313
Query: 203 QNNLTGEIPREFSNLAKLEMM 223
NN++ P S+L KL+ +
Sbjct: 314 FNNISDISP--VSSLTKLQRL 332
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 47 TMYTLKYVSFRENQLSGAFPSFIFNK--SSLQHLDFSQNTLSGEIPANICSNLPFLEYIS 104
T+ L+ + + N L F + K SSL+ LD S N+L+ C+ + ++
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 105 LSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPR 164
LS NM G + L +++L L N+ +IPKD+ +L L EL + N+L+
Sbjct: 435 LSSNMLTGSVFRCLPP--KVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491
Query: 165 EFGSLAELELMSLRESNLQGGIP 187
F L L+ + L ++ P
Sbjct: 492 VFDRLTSLQYIWLHDNPWDCTCP 514
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 107 KNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREF 166
+N+ H +P L T + LSLS N S DI L++L L L NR++ F
Sbjct: 41 RNLTH--VPKDLPPRT--KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96
Query: 167 GSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLS 226
+LE + + + LQ + +L L++ F + + +EF NL KL + LS
Sbjct: 97 LFNQDLEYLDVSHNRLQNISCCPMASLRHLDL--SFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 102 YISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG--AIPKDIGNLTKLMELYLGRNRLQ 159
+++ ++N+F + S LQ L L N + N++ L L + N L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 160 GEIPREFGSLAE-LELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA 218
+ AE + +++L + L G + + L K+++L L NN IP++ ++L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQ 473
Query: 219 KLEMMSLSENNLQGV 233
L+ ++++ N L+ V
Sbjct: 474 ALQELNVASNQLKSV 488
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 9/193 (4%)
Query: 41 IPSAIF-TMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99
+P+A F + L + N L+G + + L+ LD S N + L
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP----KDIGNLTKLMELYLGR 155
L + L + P LQ L L N+ A+P +D+GNLT L+L
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLT---HLFLHG 161
Query: 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215
NR+ F L L+ + L ++++ P +L +L L LF NNL+
Sbjct: 162 NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLV 221
Query: 216 NLAKLEMMSLSEN 228
L L+ + L++N
Sbjct: 222 PLRSLQYLRLNDN 234
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 56/149 (37%), Gaps = 2/149 (1%)
Query: 83 NTLSGEIPANICSNLPFLEYISLSKN-MFHGGIPSALSKCTYLQILSLSFNDFSGAIPKD 141
N L+G I A + L LE + LS N P+ +L L L P
Sbjct: 65 NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 142 IGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQL 201
L L LYL N LQ F L L + L + + L L+ L L
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLL 183
Query: 202 FQNNLTGEIPREFSNLAKLEMMSLSENNL 230
QN++ P F +L +L + L NNL
Sbjct: 184 HQNHVARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 48 MYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSK 107
+ TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+
Sbjct: 175 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNG 229
Query: 108 NMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFG 167
N L+ T L L L+ N S P + LTKL EL LG N++ P
Sbjct: 230 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 283
Query: 168 SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSE 227
L L + L E+ L+ P + NL L L L+ NN++ P S+L KL+ + +
Sbjct: 284 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 339
Query: 228 NNLQGV 233
N + V
Sbjct: 340 NKVSDV 345
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 9/193 (4%)
Query: 41 IPSAIF-TMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99
+P+A F L + N L+ + + L+ LD S N + L
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP----KDIGNLTKLMELYLGR 155
L + L + P LQ L L N A+P +D+GNLT L+L
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT---HLFLHG 161
Query: 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215
NR+ R F L L+ + L ++ + P +L +L L LF NNL+ +
Sbjct: 162 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221
Query: 216 NLAKLEMMSLSEN 228
L L+ + L++N
Sbjct: 222 PLRALQYLRLNDN 234
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 58/152 (38%), Gaps = 9/152 (5%)
Query: 87 GEIPANICSNLPFLEYISLSKN-MFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNL 145
I A + L LE + LS N P+ L L L P L
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 127
Query: 146 TKLMELYLGRNRLQG---EIPREFGSLAELELMSLRESNLQGGIPQE-LGNLAKLEMLQL 201
L LYL N LQ + R+ G+L L L R S+ +P+ L L+ L L
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----VPERAFRGLHSLDRLLL 183
Query: 202 FQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233
QN + P F +L +L + L NNL +
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 9/193 (4%)
Query: 41 IPSAIF-TMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99
+P+A F L + N L+ + + L+ LD S N + L
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP----KDIGNLTKLMELYLGR 155
L + L + P LQ L L N A+P +D+GNLT L+L
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT---HLFLHG 162
Query: 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215
NR+ R F L L+ + L ++ + P +L +L L LF NNL+ +
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 216 NLAKLEMMSLSEN 228
L L+ + L++N
Sbjct: 223 PLRALQYLRLNDN 235
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 58/152 (38%), Gaps = 9/152 (5%)
Query: 87 GEIPANICSNLPFLEYISLSKN-MFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNL 145
I A + L LE + LS N P+ L L L P L
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128
Query: 146 TKLMELYLGRNRLQG---EIPREFGSLAELELMSLRESNLQGGIPQE-LGNLAKLEMLQL 201
L LYL N LQ + R+ G+L L L R S+ +P+ L L+ L L
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----VPERAFRGLHSLDRLLL 184
Query: 202 FQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233
QN + P F +L +L + L NNL +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ L LS + K L L L L N +Q P F L LE + E+ L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 184 GGIPQELGNLAKLEMLQLFQNNL-TGEIPREFSNLAKLEMMSLSENNLQGVIINFLQF 240
+G L L+ L + N + + ++P FSNL L + LS N +Q + +N LQF
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 75 LQHLDFSQNTLSGEIPANICSNLPFLEYISLS---KNMFHGGIPSALSKCTYLQILSLSF 131
LQHLDF +TL + +L L Y+ +S + GI L+ L++ SF
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 132 NDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNL 182
D + N T L L L + +L+ F +L L+L+++ +NL
Sbjct: 461 KD--NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ L LS + K L L L L N +Q P F L LE + E+ L
Sbjct: 53 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 112
Query: 184 GGIPQELGNLAKLEMLQLFQNNL-TGEIPREFSNLAKLEMMSLSENNLQGVIINFLQF 240
+G L L+ L + N + + ++P FSNL L + LS N +Q + +N LQF
Sbjct: 113 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 75 LQHLDFSQNTLSGEIPANICSNLPFLEYISLS---KNMFHGGIPSALSKCTYLQILSLSF 131
LQHLDF +TL + +L L Y+ +S + GI L+ L++ SF
Sbjct: 396 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 132 NDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNL 182
D + N T L L L + +L+ F +L L+L+++ +NL
Sbjct: 456 KD--NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 40 SIPSAIFT-MYTLKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNL 97
++P+ F + L+ + R N + + PS+ FN+ SL+ LD + L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE--------------L 141
Query: 98 PFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLT---KLMELYLG 154
LEYIS + F G + L+ L+L + KDI NLT +L EL L
Sbjct: 142 KRLEYIS--EAAFEGLV--------NLRYLNLGMCNL-----KDIPNLTALVRLEELELS 186
Query: 155 RNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPRE- 213
NRL P F L L + L + + +L LE L L NNL +P +
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Query: 214 FSNLAKLEMMSLSEN 228
F+ L +LE + L+ N
Sbjct: 246 FTPLHRLERVHLNHN 260
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 151 LYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEI 210
L L N +Q F L LE++ L ++ ++ L L L+LF N LT
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 211 PREFSNLAKLEMMSLSENNLQGV 233
+ F L+KL + L N ++ +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESI 122
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 48 MYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSK 107
+ TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNG 230
Query: 108 NMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFG 167
N L+ T L L L+ N S P + LTKL EL LG N++ P
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284
Query: 168 SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMM 223
L L + L E+ L+ P + NL L L L+ NN++ P S+L KL+ +
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 48 MYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSK 107
+ TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+
Sbjct: 171 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNG 225
Query: 108 NMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFG 167
N L+ T L L L+ N S P + LTKL EL LG N++ P
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 168 SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMM 223
L L + L E+ L+ P + NL L L L+ NN++ P S+L KL+ +
Sbjct: 280 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 43 SAIFTMYTLKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNLPFLE 101
SA+ + L Y+ NQL + P+ +F+K ++L+ L +N L +P + L L
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLT 136
Query: 102 YISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI-GNLTKLMELYLGRNRLQG 160
Y++L+ N K T L L LS+N ++P+ + LT+L +L L +N+L+
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 161 EIPREFGSLAELELMSLRES 180
F L L+ + L ++
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 37/195 (18%)
Query: 40 SIPSAIFT-MYTLKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNL 97
++P+ F + L+ + R N + + PS+ FN+ SL+ LD + L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE--------------L 141
Query: 98 PFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLT---KLMELYLG 154
LEYIS + F G +++L + + KDI NLT +L EL L
Sbjct: 142 KRLEYIS--EAAFEG-------------LVNLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 155 RNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPRE- 213
NRL P F L L + L + + +L LE L L NNL +P +
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Query: 214 FSNLAKLEMMSLSEN 228
F+ L +LE + L+ N
Sbjct: 246 FTPLHRLERVHLNHN 260
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 151 LYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEI 210
L L N +Q F L LE++ L ++ ++ L L L+LF N LT
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 211 PREFSNLAKLEMMSLSENNLQGV 233
+ F L+KL + L N ++ +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESI 122
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 114 IPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELE 173
+P LS +L ++ LS N S + N+T+L+ L L NRL+ PR F L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 174 LMSLRESNLQGGIPQELGNLAKLEMLQLFQNNL 206
L+SL +++ +L+ L L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAEL 172
GIP +++ L L N F+ +PK++ N L + L NR+ + F ++ +L
Sbjct: 28 GIPRDVTE------LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 173 ELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNL 230
+ L + L+ P+ L L +L L N+++ F++L+ L +++ N L
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 186 IPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233
+P+EL N L ++ L N ++ + FSN+ +L + LS N L+ +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 137 AIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKL 196
A+P+ I T+L++L G+NR++ EF S LE + L E+ + P NL L
Sbjct: 25 AVPEGIPTETRLLDL--GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 197 EMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNL 230
L L N L F+ L+ L + +SEN +
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159
+E S + GIP+ + TYL + + S + LT L +LYLG N+LQ
Sbjct: 12 VECYSQGRTSVPTGIPA---QTTYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNKLQ 65
Query: 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAK 219
F L L ++L + LQ L +L+ L L N L F L +
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Query: 220 LEMMSLSENNLQGV 233
L+ + L +N L+ V
Sbjct: 126 LKDLRLYQNQLKSV 139
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 74 SLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFND 133
SLQ LD SQN++S + CS L +++S N+ I L +++L L N
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432
Query: 134 FSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQ 188
+IPK + L L EL + N+L+ F L L+ + L + P+
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 36/216 (16%)
Query: 50 TLKYVSFRENQLSGA--FPSFIFNKSSLQHLDFSQNT-----LSGEIPANICSNLPFLEY 102
T+ Y S +L G F F ++ +SL+ L Q I SN+ +
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 103 ISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ--- 159
M H PS +S +L S N + + ++ G+LT+L L L N+L+
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLD---FSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364
Query: 160 --GEIPREFGSLAELEL----MSLRESNLQGGIPQELGNL----------------AKLE 197
E+ + SL +L++ +S E + L +L +++
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424
Query: 198 MLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233
+L L N + IP++ L L+ ++++ N L+ V
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSV 459
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ+L LS + +L+ L L L N +Q F L+ L+ + E+NL
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENNLQGV 233
+G+L L+ L + N + ++P FSNL LE + LS N +Q +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ+L LS + +L+ L L L N +Q F L+ L+ + E+NL
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENNLQGV 233
+G+L L+ L + N + ++P FSNL LE + LS N +Q +
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ+L LS + +L+ L L L N +Q F L+ L+ + E+NL
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENNLQGV 233
+G+L L+ L + N + ++P FSNL LE + LS N +Q +
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 93 ICSNLPF-LEYISLSKN-MFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLME 150
I NLPF + + LS N + H G S S LQ+L LS + +L+ L
Sbjct: 24 IPDNLPFSTKNLDLSWNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLST 82
Query: 151 LYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG-E 209
L L N +Q F L+ L+ + E+NL +G+L L+ L + N + +
Sbjct: 83 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Query: 210 IPREFSNLAKLEMMSLSENNLQGV 233
+P FSNL LE + LS N +Q +
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ+L LS + +L+ L L L N +Q F L+ L+ + E+NL
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENNLQGV 233
+G+L L+ L + N + ++P FSNL LE + LS N +Q +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 2/175 (1%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
G + F +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 99 FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI-GNLTKLMELYLGRNR 157
L Y+ +S + + L++L ++ N F DI L L L L + +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 158 LQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
L+ P F SL+ L+++++ + L+ L L+ + L N PR
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ+L LS + +L+ L L L N +Q F L+ L+ + E+NL
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENNLQGV 233
+G+L L+ L + N + ++P FSNL LE + LS N +Q +
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ+L LS + +L+ L L L N +Q F L+ L+ + E+NL
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENNLQGV 233
+G+L L+ L + N + ++P FSNL LE + LS N +Q +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 26/220 (11%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
G + F +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 99 FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158
L Y+ +S + + L++L ++ N F DI
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------------- 465
Query: 159 QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA 218
F L L + L + L+ P +L+ L++L + NN + L
Sbjct: 466 -------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 219 KLEMMSLSENNLQGVIINFLQFYSSSACFCNLY--SFACS 256
L+++ S N++ LQ + SS F NL FAC+
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183
LQ+L LS + +L+ L L L N +Q F L+ L+ + E+NL
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 184 GGIPQELGNLAKLEMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENNLQGV 233
+G+L L+ L + N + ++P FSNL LE + LS N +Q +
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 26/220 (11%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
G + F +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 445
Query: 99 FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158
L Y+ +S + + L++L ++ N F DI
Sbjct: 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------------- 489
Query: 159 QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA 218
F L L + L + L+ P +L+ L++L + NN + L
Sbjct: 490 -------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542
Query: 219 KLEMMSLSENNLQGVIINFLQFYSSSACFCNLY--SFACS 256
L+++ S N++ LQ + SS F NL FAC+
Sbjct: 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 23/105 (21%)
Query: 122 TYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ--GEIP--------------RE 165
T L+ L LS N S P + +LTKL EL + RNRL+ IP R+
Sbjct: 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD 120
Query: 166 FGS---LAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLT 207
S L LE++S+R + L+ + LG L+KLE+L L N +T
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 97 LPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRN 156
LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +N
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 157 RLQGEIPREFGSLAELELMSL 177
+ R L L+++ L
Sbjct: 184 HISD--LRALAGLKNLDVLEL 202
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 206 NHISD--LRALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 206 NHISD--LRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 206 NHISD--LRALAGLKNLDVLEL 225
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 152 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 207
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 208 NHISDL--RALAGLKNLDVLEL 227
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 130 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 185
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 186 NHISDL--RALAGLKNLDVLEL 205
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 71 NKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHG---------GIPSALSKC 121
N++ LQH SQ ++ + +I + + + ++H I + + K
Sbjct: 189 NQALLQHKKLSQYSIDED--DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY 246
Query: 122 TYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN 181
+L L L+ N + +P +I NL+ L L L NRL +P E GS +L+ + N
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD-N 303
Query: 182 LQGGIPQELGNLAKLEMLQLFQNNLTGE 209
+ +P E GNL L+ L + N L +
Sbjct: 304 MVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 188 NHISDL--RALAGLKNLDVLEL 207
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 122 TYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN 181
T L+ L+L+ N + P + NL KL LY+G N++ +L L + L E N
Sbjct: 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN 121
Query: 182 LQGGIPQELGNLAKLEMLQLFQN-NLTGEIPREFSNLAKLEMMSLSENNLQGV--IINFL 238
+ P L NL K L L N NL+ P SN L ++++E+ ++ V I N
Sbjct: 122 ISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTPIANLT 177
Query: 239 QFYSSSACF 247
YS S +
Sbjct: 178 DLYSLSLNY 186
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 43 SAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102
S + ++ +L Y + NQ++ P + N + L L N ++ P +NL L +
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP---LANLSQLTW 247
Query: 103 ISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEI 162
+ + N +A+ T L+ L++ N S + NL++L L+L N+L E
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303
Query: 163 PREFGSLAELELMSLRESNLQGGIPQELGNLAKLE 197
G L L + L ++++ P L +L+K +
Sbjct: 304 XEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXD 336
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 51 LKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMF 110
L Y++ E+++ P I N + L L + N + P ++L L Y + N
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQI 211
Query: 111 HGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG-EIPREFGSL 169
P A T L L + N + P + NL++L L +G N++ ++ L
Sbjct: 212 TDITPVA--NXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKL 267
Query: 170 AELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENN 229
L + S + S++ L NL++L L L N L E L L + LS+N+
Sbjct: 268 KXLNVGSNQISDIS-----VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNH 322
Query: 230 LQGV 233
+ +
Sbjct: 323 ITDI 326
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 188 NHISDL--RALAGLKNLDVLEL 207
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 93/245 (37%), Gaps = 55/245 (22%)
Query: 41 IPSAIFTMYTLKYVSFRENQL-------SGAFPSF--IFNKSSLQHLDFSQNTLS----- 86
+PS I M +LK + N + +FPS ++ K +++ LD L
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENL 351
Query: 87 -------GEIPANICSNLPF-----LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDF 134
+I A+ C NL L+Y++LS N G A +C L++L ++F
Sbjct: 352 QKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL 411
Query: 135 SGAIPK-------------------DIGN------LTKLMELYLGRNRLQ-GEIPRE--F 166
P D N L L L L N Q G I +
Sbjct: 412 HVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLL 471
Query: 167 GSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLS 226
+ LE++ L NL Q L + L L N+LTG+ S+L L ++++
Sbjct: 472 QMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMA 530
Query: 227 ENNLQ 231
NN++
Sbjct: 531 SNNIR 535
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEI-PREFGSLAE 171
G+PS + L+ L L+ N F + + L +LY+ N + ++ R L
Sbjct: 291 GLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLEN 350
Query: 172 LELMSLRESNLQGG--IPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLS 226
L+ + L S+++ +L NL L+ L L N G + F +LE++ ++
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Query: 97 LPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI-GNLTKLMELYLGR 155
L L +++L N T L L L+ N + ++P + +LT+L +LYLG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215
N+L+ F L +L+ + L + LQ L L+ L L N L F
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 216 NLAKLEMMSL 225
L KL+ ++L
Sbjct: 177 RLGKLQTITL 186
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 77 HLDFSQ-NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS 135
+LD++Q TLS A + +L L + L+ N T L L L N
Sbjct: 65 NLDYNQLQTLS----AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 136 GAIPKDI-GNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLA 194
++P + LTKL EL L N+LQ F L L+ +SL + LQ L
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 195 KLEMLQLFQN 204
KL+ + LF N
Sbjct: 180 KLQTITLFGN 189
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 40 SIPSAIFTMYT-LKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNL 97
S+P +F T L + NQL + PS +F++ + L+ L + N L IPA L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 98 PFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS 135
L+ +SLS N A + LQ ++L N F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAEL 172
GIP+ K L + S S A + LTKL L L N+LQ F L EL
Sbjct: 32 GIPADTEK---LDLQSTGLATLSDATFR---GLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 173 ELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQG 232
+ L + L +L +L+ L L N L F L KL+ + L+ N LQ
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 233 V 233
+
Sbjct: 146 I 146
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 129 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 185 NHISD--LRALAGLKNLDVLEL 204
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Query: 97 LPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI-GNLTKLMELYLGR 155
L L +++L N T L L L+ N + ++P + +LT+L +LYLG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215
N+L+ F L +L+ + L + LQ L L+ L L N L F
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 216 NLAKLEMMSL 225
L KL+ ++L
Sbjct: 177 RLGKLQTITL 186
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 77 HLDFSQ-NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS 135
+LD++Q TLS A + +L L + L+ N T L L L N
Sbjct: 65 NLDYNQLQTLS----AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 136 GAIPKDI-GNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLA 194
++P + LTKL EL L N+LQ F L L+ +SL + LQ L
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 195 KLEMLQLFQN 204
KL+ + LF N
Sbjct: 180 KLQTITLFGN 189
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 40 SIPSAIFTMYT-LKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNL 97
S+P +F T L + NQL + PS +F++ + L+ L + N L IPA L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 98 PFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS 135
L+ +SLS N A + LQ ++L N F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAEL 172
GIP+ K L + S S A + LTKL L L N+LQ F L EL
Sbjct: 32 GIPADTEK---LDLQSTGLATLSDATFR---GLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 173 ELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQG 232
+ L + L +L +L+ L L N L F L KL+ + L+ N LQ
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 233 V 233
+
Sbjct: 146 I 146
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 138 IPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLE 197
+P I T+L+ L+ N++Q F L LE++ L ++++ LA L
Sbjct: 58 VPDGISTNTRLLNLH--ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 198 MLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233
L+LF N LT F L+KL+ + L N ++ +
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 53/193 (27%)
Query: 40 SIPSAIFT-MYTLKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNL 97
+IP+ F + LK + R N + + PS+ FN+ SL+ LD + L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE--------------L 170
Query: 98 PFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNR 157
L YIS + F G LS YL + + + P L KL EL L N
Sbjct: 171 KRLSYIS--EGAFEG-----LSNLRYLNLAMCNLREIPNLTP-----LIKLDELDLSGNH 218
Query: 158 LQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL 217
L P F L L+ + + +S +Q+ + N F NL
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQS-----------------QIQVIERN-------AFDNL 254
Query: 218 AKLEMMSLSENNL 230
L ++L+ NNL
Sbjct: 255 QSLVEINLAHNNL 267
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 89 IPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKD-IGNLTK 147
I N +L LE + LS+N A + L L L F++ IP L+K
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL-FDNRLTTIPNGAFVYLSK 137
Query: 148 LMELYLGRNRLQ------------------GEIPR-------EFGSLAELELMSLRESNL 182
L EL+L N ++ GE+ R F L+ L ++L NL
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Query: 183 QGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233
+ IP L L KL+ L L N+L+ P F L L+ + + ++ +Q +
Sbjct: 198 RE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 100 LEYISLSKNMFHGGIPSALS--KCTYLQILSLSFNDFSGAIPKDIGN-----LTKLMELY 152
++ +SL+ N S S K T L L LS+N+ D+GN L L L
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL-----HDVGNGSFSYLPSLRYLS 278
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGI-----PQ----ELGNLAKLEMLQLFQ 203
L N +Q PR F L+ L +SL+ + + + P L LE L +
Sbjct: 279 LEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDD 338
Query: 204 NNLTGEIPREFSNLAKLEMMSLSE 227
NN+ F+ L L+ +SLS+
Sbjct: 339 NNIPSTKSNTFTGLVSLKYLSLSK 362
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N S +P + LTKL LYL +
Sbjct: 127 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSK 182
Query: 156 NRLQGEIPREFGSLAELELMSL 177
N + R L L+++ L
Sbjct: 183 NHISDL--RALCGLKNLDVLEL 202
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 30/169 (17%)
Query: 63 GAFPSFIFNKSSLQHLDFSQNTL-SGEIPANICSNLPFLEYISLSKNMFHGGIPSAL--- 118
GA+PS LQ L SQN L S + I L L + +S+N FH +P +
Sbjct: 384 GAWPS-------LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWP 435
Query: 119 SKCTYLQILSLSFNDFSGAIPK-----DIGN---------LTKLMELYLGRNRLQGEIPR 164
K +L + S IP+ D+ N L +L ELY+ RN+L+ +P
Sbjct: 436 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LPD 494
Query: 165 EFGSLAELELMSLRESNLQGGIPQEL-GNLAKLEMLQLFQNNLTGEIPR 212
SL + L+ SN +P + L L+ + L N PR
Sbjct: 495 --ASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 541
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 89 IPANICSNLPFLEYISLS-KNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI-GNLT 146
+P I S+ LE S +++ HG K T L LSLS N ++P + LT
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT 76
Query: 147 KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQEL-GNLAKLEMLQLFQNN 205
KL LYL N+LQ F L +L+ ++L + L+ +P + L L+ + L N
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135
Query: 206 LTGEIPR 212
PR
Sbjct: 136 WDCSCPR 142
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 168 SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSE 227
S LEL S + +L G+ L +L L L QN + F L KL ++ L E
Sbjct: 29 SATRLELESNKLQSLPHGV---FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 228 NNLQGV 233
N LQ +
Sbjct: 86 NKLQSL 91
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 26/220 (11%)
Query: 39 GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98
G + F +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 99 FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158
L Y+ +S + + L++L ++ N F DI
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------------- 170
Query: 159 QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA 218
F L L + L + L+ P +L+ L++L + NN + L
Sbjct: 171 -------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223
Query: 219 KLEMMSLSENNLQGVIINFLQFYSSSACFCNLY--SFACS 256
L+++ S N++ LQ + SS F NL FAC+
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 29/164 (17%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159
L Y+ L+ N K T L+ L L N LT L LYL N+LQ
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR-EFSNLA 218
L G+ +L NL +L++ NN +P F L
Sbjct: 147 S---------------------LPKGVFDKLTNLTRLDL----DNNQLQSLPEGVFDKLT 181
Query: 219 KLEMMSLSENNLQGV---IINFLQFYSSSACFCNLYSFACSLIM 259
+L+ +SL++N L+ V + + L + N + ACS I+
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 14/203 (6%)
Query: 41 IPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFL 100
+PS + + TLK + N+ N SL HL NT E+ NL L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 101 EYISLSKNMFHGGIPSA------LSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLG 154
+ LS H I ++ L ++LQ L+LS+N+ + +L L L
Sbjct: 353 RELDLS----HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
Query: 155 RNRLQ-GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNL-TGEIPR 212
RL+ + F +L L++++L S L Q L L+ L L N+ G I +
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468
Query: 213 EFS--NLAKLEMMSLSENNLQGV 233
S L +LE++ LS +L +
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSI 491
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 97 LPFLEYISLSKNMFHGG---IPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYL 153
LP L++++L N F G ++L L+IL LSF D S +L + + L
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 154 GRNRL 158
NRL
Sbjct: 508 SHNRL 512
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155
+LP LE + L N + LS+ T L LSL N +P + LTKL LYL +
Sbjct: 130 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSK 185
Query: 156 NRLQG-EIPREFGSLAELELMS 176
N + R +L LEL S
Sbjct: 186 NHISDLRALRGLKNLDVLELFS 207
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 74 SLQHLDFSQNTLSG-EIPANICSNLPFLEYISLSKNMFHGGIPSAL---SKCTYLQILSL 129
SLQ L QN L+ E L L I +SKN FH +P K YL + S
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHS-MPETCQWPEKMKYLNLSST 420
Query: 130 SFNDFSGAIPKDIGNLT--------------KLMELYLGRNRL 158
+ +G IPK + L +L ELY+ RN+L
Sbjct: 421 RIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKL 463
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP-KDIGNLTKLMELYLGRNRL 158
L ++L+KN A S +L++L L N+ + ++ L + E+YL N+
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442
Query: 159 QGEIPREFGSLAELELMSLRESNLQ--GGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN 216
F + L+ + LR L+ P L L +L L NN+
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502
Query: 217 LAKLEMMSLSENNL 230
L KLE++ L NNL
Sbjct: 503 LEKLEILDLQHNNL 516
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP-KDIGNLTKLMELYLGRNRL 158
L ++L+KN A S +L++L L N+ + ++ L + E+YL N+
Sbjct: 388 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 447
Query: 159 QGEIPREFGSLAELELMSLRESNLQ--GGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN 216
F + L+ + LR L+ P L L +L L NN+
Sbjct: 448 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 507
Query: 217 LAKLEMMSLSENNL 230
L KLE++ L NNL
Sbjct: 508 LEKLEILDLQHNNL 521
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP-KDIGNLTKLMELYLGRNRL 158
L ++L+KN A S +L++L L N+ + ++ L + E+YL N+
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 452
Query: 159 QGEIPREFGSLAELELMSLRESNLQ--GGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN 216
F + L+ + LR L+ P L L +L L NN+
Sbjct: 453 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 512
Query: 217 LAKLEMMSLSENNL 230
L KLE++ L NNL
Sbjct: 513 LEKLEILDLQHNNL 526
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRN----RLQGEIPREFGS 168
G+PS + L+ L LS N F N L LY+ N L + G+
Sbjct: 289 GLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN 348
Query: 169 LAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSEN 228
L L+L S + +L NL+ L+ L L N G + F +LE++ L+
Sbjct: 349 LQTLDL-SHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 229 NLQGVI-------INFLQFYSSSACF 247
L ++FLQ + + CF
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCF 433
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 138 IPKDIGNLTKLMELYLGRNRLQGEIPRE--FGSLAELELMSLRESNLQGGIPQELGNLAK 195
IP+DI T EL L N L G I + FG L L + L+ + L G P +
Sbjct: 23 IPRDIPLHT--TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 196 LEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA---------- 245
++ LQL +N + + F L +L+ ++L +N + V+ + +S
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Query: 246 CFCNLYSFA 254
C C+L FA
Sbjct: 140 CNCHLAWFA 148
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 28/168 (16%)
Query: 63 GAFPSFIFNKSSLQHLDFSQNTL-SGEIPANICSNLPFLEYISLSKNMFHGGIPSAL--- 118
GA+PS LQ L SQN L S + I L L + +S+N FH +P +
Sbjct: 358 GAWPS-------LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWP 409
Query: 119 SKCTYLQILSLSFNDFSGAIPK-----DIGN---------LTKLMELYLGRNRLQGEIPR 164
K +L + S IP+ D+ N L +L ELY+ RN+L+ +P
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LP- 467
Query: 165 EFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
+ L +M + + L+ L L+ + L N PR
Sbjct: 468 DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 72 KSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSF 131
+SS++HLD S + + + + L L+ ++L+ N + A LQ+L+LS+
Sbjct: 265 RSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 132 NDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNL 182
N + L K+ + L +N + + F L +L+ + LR++ L
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 68 FIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSAL-----SKCT 122
F+ LQ L +QN S S P LE + L +NM + L +
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 123 YLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL----QGEIPREFGSLAELELMSLR 178
+LQ+L L+ N + P +LT L L L NRL ++P A LE++ +
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDIS 534
Query: 179 ESNLQGGIPQELGNLAKLEM 198
+ L P +L+ L++
Sbjct: 535 RNQLLAPNPDVFVSLSVLDI 554
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
L ++++ + F +LE ++L ++ + L L L L QN L R
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 213 EFSNLAKLEMMSLSENNLQGV 233
F NL KLE++ LS N+++ +
Sbjct: 342 MFENLDKLEVLDLSYNHIRAL 362
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 73 SSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSAL-SKCTYLQILSLSF 131
+ L+ L +QN ++ +I N L L ++LS+N F G I S + L++L LS+
Sbjct: 299 TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY 356
Query: 132 NDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQ 188
N + L L EL L N+L+ F L L+ + L + P+
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 193 LAKLEMLQLFQNNLTGEIPRE--FSNLAKLEMMSLSENNLQGV 233
LA LE+L L Q NL G + F L LEM+ L +NN++ +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159
L+ L+K G +P L L LS N ++P L L L + NRL
Sbjct: 63 LDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 114
Query: 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN-LA 218
L EL+ + L+ + L+ P L KLE L L NNLT E+P N L
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 173
Query: 219 KLEMMSLSENNLQGVIINF 237
L+ + L EN+L + F
Sbjct: 174 NLDTLLLQENSLYTIPKGF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 93 ICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELY 152
+ LP L + LS N +P L +L +SFN +L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN--------------RLTSLP 116
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG R L EL+ + L+ + L+ P L KLE L L NNLT E+P
Sbjct: 117 LGALR----------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 213 EFSN-LAKLEMMSLSENNLQGVIINF-------LQFYSSSACFCN 249
N L L+ + L EN+L + F F + CN
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 93 ICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELY 152
+ LP L + LS N +P L +L +SFN +L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN--------------RLTSLP 116
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG R L EL+ + L+ + L+ P L KLE L L NNLT E+P
Sbjct: 117 LGALR----------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 213 EFSN-LAKLEMMSLSENNLQGVIINF-------LQFYSSSACFCN 249
N L L+ + L EN+L + F F + CN
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 93 ICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELY 152
+ LP L + LS N +P L +L +SFN +L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN--------------RLTSLP 116
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG R L EL+ + L+ + L+ P L KLE L L NNLT E+P
Sbjct: 117 LGALR----------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 213 EFSN-LAKLEMMSLSENNLQGVIINF-------LQFYSSSACFCN 249
N L L+ + L EN+L + F F + CN
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159
L+ L+K G +P L L LS N ++P L L L + NRL
Sbjct: 62 LDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN-LA 218
L EL+ + L+ + L+ P L KLE L L NNLT E+P N L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172
Query: 219 KLEMMSLSENNLQGVIINF 237
L+ + L EN+L + F
Sbjct: 173 NLDTLLLQENSLYTIPKGF 191
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 12/168 (7%)
Query: 73 SSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFH--GGIPSALS--KCTYLQILS 128
SSL L N + ++P + S L + I + N G P A K YL+I
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 129 LSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQ 188
IPKD+ L EL+L N++Q + ++L + L + ++
Sbjct: 182 AKLT----GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235
Query: 189 ELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIIN 236
L L L L L N L+ +P +L L+++ L NN+ V +N
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG ++ ++P + A L+L + + + ++ G + NL L L L N ++ P
Sbjct: 41 LGLEKVPKDLPPD---TALLDLQNNKITEIKDG---DFKNLKNLHTLILINNKISKISPG 94
Query: 213 EFSNLAKLEMMSLSENNLQ 231
F+ L KLE + LS+N L+
Sbjct: 95 AFAPLVKLERLYLSKNQLK 113
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG ++ ++P + A L+L + + + ++ G + NL L L L N ++ P
Sbjct: 41 LGLEKVPKDLPPD---TALLDLQNNKITEIKDG---DFKNLKNLHTLILINNKISKISPG 94
Query: 213 EFSNLAKLEMMSLSENNLQ 231
F+ L KLE + LS+N L+
Sbjct: 95 AFAPLVKLERLYLSKNQLK 113
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 112 GGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAE 171
GIP T Q L L+ N + P +L L +LY N+L F L +
Sbjct: 29 AGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 172 LELMSLRESNLQGGIPQ-ELGNLAKLEMLQLFQNNLTGE 209
L + L +++L+ IP+ NL L + L+ N E
Sbjct: 83 LTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 112 GGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAE 171
G PS +C+ Q L N ++P I T L+L N++ P F L
Sbjct: 4 AGCPS---QCSCDQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN 58
Query: 172 LELMSLRESNLQGGIPQEL-GNLAKLEMLQLFQNNLTGEIPR-EFSNLAKLEMMSLSEN 228
L+ + SN IP + L +L L L N+L IPR F NL L + L N
Sbjct: 59 LQQLYF-NSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 27/146 (18%)
Query: 93 ICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELY 152
+ LP L + LS N +P L +L +SFN +L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN--------------RLTSLP 116
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG R L EL+ + L+ + L+ P L KLE L L N+LT E+P
Sbjct: 117 LGALR----------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA 165
Query: 213 EFSN-LAKLEMMSLSENNLQGVIINF 237
N L L+ + L EN+L + F
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 193 LAKLEMLQLFQNNLTGEIPRE--FSNLAKLEMMSLSENNLQGV 233
LA LE+L L Q NL G + F L LEM+ L +NN++ +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 112 GGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAE 171
GIP T Q+L L N + P +LT+L L L N+L F L +
Sbjct: 36 AGIP------TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 172 LELMSLRESNLQGGIPQEL-GNLAKLEMLQLFQNNLTGE 209
L ++L + L+ IP + NL L + LF N E
Sbjct: 90 LTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPWDCE 127
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 62 SGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSK 107
GAF F L+ ++ SQN + I A++ SNLP L I + K
Sbjct: 47 KGAFSGF----GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159
L+ L+K G +P L L LS N ++P L L L + NRL
Sbjct: 62 LDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN-LA 218
L EL+ + L+ + L+ P L KLE L L N LT E+P N L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 219 KLEMMSLSENNLQGVIINF 237
L+ + L EN+L + F
Sbjct: 173 NLDTLLLQENSLYTIPKGF 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159
L+ L+K G +P L L LS N ++P L L L + NRL
Sbjct: 62 LDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN-LA 218
L EL+ + L+ + L+ P L KLE L L N LT E+P N L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 219 KLEMMSLSENNLQGVIINF 237
L+ + L EN+L + F
Sbjct: 173 NLDTLLLQENSLYTIPKGF 191
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 62 SGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSK 107
GAF F L+ ++ SQN + I A++ SNLP L I + K
Sbjct: 47 KGAFSGF----GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 27/146 (18%)
Query: 93 ICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELY 152
+ LP L + LS N +P L +L +SFN +L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN--------------RLTSLP 116
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG R L EL+ + L+ + L+ P L KLE L L N LT E+P
Sbjct: 117 LGALR----------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 213 EFSN-LAKLEMMSLSENNLQGVIINF 237
N L L+ + L EN+L + F
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 27/146 (18%)
Query: 93 ICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELY 152
+ LP L + LS N +P L +L +SFN +L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN--------------RLTSLP 116
Query: 153 LGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212
LG R L EL+ + L+ + L+ P L KLE L L N LT E+P
Sbjct: 117 LGALR----------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 213 EFSN-LAKLEMMSLSENNLQGVIINF 237
N L L+ + L EN+L + F
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAEL 172
GIP T Q+L L N + P LT+L L L N+L F L +L
Sbjct: 27 GIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 173 ELMSLRESNLQGGIPQ-ELGNLAKLEMLQLFQN 204
+SL ++ L+ IP+ NL L + L N
Sbjct: 81 TQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAEL 172
GIP T Q+L L N + P LT+L L L N+L F L +L
Sbjct: 27 GIP------TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 173 ELMSLRESNLQGGIPQ-ELGNLAKLEMLQLFQN 204
+SL ++ L+ IP+ NL L + L N
Sbjct: 81 TQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 113 GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAEL 172
GIP T Q+L L N + P LT+L L L N+L F L +L
Sbjct: 35 GIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 88
Query: 173 ELMSLRESNLQGGIPQ-ELGNLAKLEMLQLFQN 204
+SL ++ L+ IP+ NL L + L N
Sbjct: 89 TQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 120
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 59 NQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFH 111
NQL G P+F ++ L L+ + N ++ EIPAN C +E +S + N
Sbjct: 340 NQLEGKLPAF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 187 PQELGNLAKLEMLQLFQNNLTGEIPRE-FSNLAKLEMMSLSENNLQGV 233
P N+ L +L L +N+L+ +PR F N KL +S+S NNL+ +
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERI 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,275,198
Number of Sequences: 62578
Number of extensions: 235798
Number of successful extensions: 693
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 210
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)