Query 045571
Match_columns 260
No_of_seqs 148 out of 2467
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 03:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-28 4.6E-33 222.2 17.9 238 2-240 141-378 (968)
2 KOG4194 Membrane glycoprotein 100.0 4.2E-30 9E-35 207.5 4.6 256 1-257 149-464 (873)
3 PLN00113 leucine-rich repeat r 100.0 9E-28 1.9E-32 218.1 17.1 238 1-239 164-401 (968)
4 KOG4194 Membrane glycoprotein 99.9 3E-26 6.5E-31 185.4 6.6 241 3-245 80-344 (873)
5 KOG4237 Extracellular matrix p 99.9 1.7E-24 3.6E-29 167.6 -1.7 239 3-256 69-370 (498)
6 KOG0444 Cytoskeletal regulator 99.8 4.3E-23 9.2E-28 169.1 -2.3 236 3-245 105-365 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 1.2E-22 2.7E-27 166.4 -3.4 227 2-235 127-379 (1255)
8 KOG4237 Extracellular matrix p 99.8 1.3E-20 2.9E-25 146.2 -0.9 234 8-245 53-349 (498)
9 PLN03210 Resistant to P. syrin 99.8 1.4E-17 3E-22 153.0 18.3 234 2-244 612-895 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 2.9E-21 6.3E-26 150.3 -8.3 130 97-233 182-312 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 2.1E-20 4.5E-25 145.6 -6.7 228 2-241 69-297 (565)
12 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-18 3.8E-23 138.8 3.8 233 2-234 24-294 (319)
13 PLN03210 Resistant to P. syrin 99.7 2.6E-16 5.7E-21 144.7 18.1 194 2-205 590-813 (1153)
14 KOG0618 Serine/threonine phosp 99.7 3.3E-19 7.1E-24 151.6 -0.8 237 2-246 242-504 (1081)
15 PRK15370 E3 ubiquitin-protein 99.7 6.4E-16 1.4E-20 134.4 14.8 202 3-232 180-381 (754)
16 cd00116 LRR_RI Leucine-rich re 99.7 8.4E-18 1.8E-22 134.9 2.2 230 1-230 51-319 (319)
17 PRK15387 E3 ubiquitin-protein 99.7 9.6E-16 2.1E-20 132.9 14.4 88 147-243 383-470 (788)
18 PRK15370 E3 ubiquitin-protein 99.7 5.3E-16 1.1E-20 134.9 11.7 206 2-232 200-429 (754)
19 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.6E-23 121.1 -4.7 182 46-234 30-215 (264)
20 KOG0617 Ras suppressor protein 99.6 9.4E-18 2E-22 116.7 -3.3 166 70-242 30-196 (264)
21 KOG0618 Serine/threonine phosp 99.6 4.7E-17 1E-21 138.7 -1.4 239 2-249 220-486 (1081)
22 PRK15387 E3 ubiquitin-protein 99.6 4.8E-14 1E-18 122.5 14.2 66 171-245 383-448 (788)
23 KOG1909 Ran GTPase-activating 99.4 2.8E-14 6E-19 109.8 1.4 229 2-230 31-310 (382)
24 KOG3207 Beta-tubulin folding c 99.3 8.5E-13 1.8E-17 104.5 1.7 204 3-207 123-339 (505)
25 KOG3207 Beta-tubulin folding c 99.3 5.8E-13 1.3E-17 105.4 0.5 184 23-206 119-313 (505)
26 KOG0532 Leucine-rich repeat (L 99.3 1.9E-13 4.1E-18 111.5 -2.3 195 23-228 73-270 (722)
27 KOG1909 Ran GTPase-activating 99.3 7.6E-13 1.7E-17 101.9 0.4 217 18-234 23-286 (382)
28 KOG0532 Leucine-rich repeat (L 99.2 7.3E-13 1.6E-17 108.2 -2.1 178 48-235 74-251 (722)
29 COG4886 Leucine-rich repeat (L 99.2 6.3E-11 1.4E-15 97.9 7.3 199 29-237 97-296 (394)
30 PF14580 LRR_9: Leucine-rich r 99.2 4E-11 8.6E-16 86.3 5.0 130 21-155 15-149 (175)
31 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.3E-15 96.6 7.2 180 21-209 112-292 (394)
32 PF13855 LRR_8: Leucine rich r 99.1 6.7E-11 1.5E-15 70.4 4.3 61 1-61 1-61 (61)
33 KOG4658 Apoptotic ATPase [Sign 99.1 5.6E-11 1.2E-15 105.6 5.3 106 2-109 546-653 (889)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-10 3.9E-15 82.9 5.9 124 97-224 18-146 (175)
35 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.1E-16 93.0 0.9 133 96-234 282-415 (490)
36 PLN03150 hypothetical protein; 99.1 6.7E-10 1.4E-14 96.4 9.7 106 27-133 420-526 (623)
37 KOG2120 SCF ubiquitin ligase, 99.0 1.4E-11 3E-16 93.4 -1.9 206 27-258 187-403 (419)
38 PF13855 LRR_8: Leucine rich r 99.0 4.7E-10 1E-14 66.7 3.9 61 170-230 1-61 (61)
39 PLN03150 hypothetical protein; 98.9 2.4E-09 5.3E-14 93.0 7.8 93 148-240 420-512 (623)
40 KOG1259 Nischarin, modulator o 98.9 3.7E-10 8E-15 86.1 0.0 129 24-159 283-412 (490)
41 KOG2982 Uncharacterized conser 98.9 6.3E-10 1.4E-14 84.6 1.1 38 170-207 224-262 (418)
42 KOG2982 Uncharacterized conser 98.7 5.8E-09 1.2E-13 79.5 2.8 208 27-235 47-266 (418)
43 KOG4658 Apoptotic ATPase [Sign 98.7 1.7E-08 3.8E-13 90.1 6.1 83 1-84 571-653 (889)
44 KOG2120 SCF ubiquitin ligase, 98.7 3.3E-10 7.1E-15 86.1 -4.8 179 2-180 186-373 (419)
45 KOG0531 Protein phosphatase 1, 98.7 3.4E-09 7.5E-14 88.0 0.1 205 21-235 91-322 (414)
46 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.3E-14 90.1 -2.1 129 23-159 70-199 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.6 1.2E-08 2.5E-13 76.9 1.5 230 3-232 32-317 (388)
48 KOG1859 Leucine-rich repeat pr 98.3 6E-09 1.3E-13 88.3 -7.1 106 96-207 185-292 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.3 3.7E-07 8.1E-12 69.0 2.7 213 20-232 25-286 (388)
50 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.7E-13 86.4 -6.3 159 66-232 102-268 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.3 2E-06 4.4E-11 46.9 4.1 39 194-233 1-39 (44)
52 PF12799 LRR_4: Leucine Rich r 98.2 2.4E-06 5.2E-11 46.6 4.0 37 1-38 1-37 (44)
53 KOG3665 ZYG-1-like serine/thre 98.2 3.5E-07 7.7E-12 79.9 0.1 134 73-208 122-264 (699)
54 KOG3665 ZYG-1-like serine/thre 98.2 8.8E-07 1.9E-11 77.4 2.0 153 47-201 120-282 (699)
55 KOG4579 Leucine-rich repeat (L 98.1 4.4E-07 9.4E-12 61.6 -0.4 86 23-111 51-136 (177)
56 PF13306 LRR_5: Leucine rich r 98.1 1.5E-05 3.2E-10 55.0 7.0 15 117-131 30-44 (129)
57 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.8E-12 62.9 -2.4 82 123-207 54-136 (177)
58 PF13306 LRR_5: Leucine rich r 98.1 2E-05 4.4E-10 54.3 7.0 124 116-245 6-129 (129)
59 KOG4341 F-box protein containi 98.0 2.6E-07 5.6E-12 73.7 -4.6 243 3-245 140-429 (483)
60 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.3E-10 57.2 5.2 102 124-227 44-149 (233)
61 PRK15386 type III secretion pr 97.9 0.00027 5.8E-09 57.8 11.9 136 46-204 49-187 (426)
62 KOG1644 U2-associated snRNP A' 97.9 3.4E-05 7.3E-10 56.0 5.2 106 26-133 43-151 (233)
63 PRK15386 type III secretion pr 97.8 0.00038 8.3E-09 56.9 11.4 15 24-38 51-65 (426)
64 KOG1947 Leucine rich repeat pr 97.4 2.1E-05 4.6E-10 66.8 -1.4 112 23-134 186-307 (482)
65 KOG4341 F-box protein containi 97.3 2.1E-05 4.5E-10 63.1 -2.3 245 1-245 164-455 (483)
66 KOG1947 Leucine rich repeat pr 97.1 5.1E-05 1.1E-09 64.5 -1.8 37 72-108 268-305 (482)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.3E-09 53.6 2.0 113 17-131 35-152 (260)
68 KOG2123 Uncharacterized conser 97.1 3.6E-05 7.8E-10 58.7 -3.1 98 3-104 21-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00051 1.1E-08 52.0 2.2 109 44-155 38-152 (260)
70 KOG2123 Uncharacterized conser 96.9 5.1E-05 1.1E-09 57.9 -3.2 102 23-128 17-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0056 1.2E-07 27.7 1.2 12 220-231 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0077 1.7E-07 27.2 1.4 13 2-14 1-13 (22)
73 KOG4308 LRR-containing protein 95.5 8.1E-05 1.8E-09 62.6 -9.9 83 27-110 89-184 (478)
74 PF13516 LRR_6: Leucine Rich r 94.5 0.028 6.1E-07 25.9 1.5 23 217-239 1-23 (24)
75 KOG3864 Uncharacterized conser 93.8 0.0094 2E-07 43.7 -1.3 82 147-228 102-186 (221)
76 PF13504 LRR_7: Leucine rich r 93.3 0.078 1.7E-06 22.1 1.6 13 2-14 2-14 (17)
77 smart00369 LRR_TYP Leucine-ric 92.9 0.1 2.2E-06 24.4 1.9 21 218-238 2-22 (26)
78 smart00370 LRR Leucine-rich re 92.9 0.1 2.2E-06 24.4 1.9 21 218-238 2-22 (26)
79 KOG3864 Uncharacterized conser 92.5 0.072 1.6E-06 39.2 1.5 76 170-245 101-179 (221)
80 KOG0473 Leucine-rich repeat pr 86.5 0.018 3.8E-07 43.4 -5.5 89 19-111 36-124 (326)
81 KOG0473 Leucine-rich repeat pr 86.0 0.013 2.8E-07 44.1 -6.4 84 120-206 40-123 (326)
82 smart00368 LRR_RI Leucine rich 82.9 0.89 1.9E-05 21.7 1.3 16 25-40 2-17 (28)
83 smart00367 LRR_CC Leucine-rich 80.6 1.5 3.3E-05 20.4 1.7 16 218-233 2-18 (26)
84 smart00365 LRR_SD22 Leucine-ri 79.1 1.8 4E-05 20.3 1.6 16 218-233 2-17 (26)
85 KOG3763 mRNA export factor TAP 74.5 1.8 4E-05 37.0 1.5 63 168-232 216-284 (585)
86 KOG3763 mRNA export factor TAP 72.6 2.5 5.4E-05 36.3 1.9 80 23-104 216-307 (585)
87 smart00364 LRR_BAC Leucine-ric 67.0 4.1 8.9E-05 19.2 1.2 13 2-14 3-15 (26)
88 KOG4308 LRR-containing protein 59.8 0.12 2.7E-06 43.9 -8.1 37 25-61 144-184 (478)
89 TIGR00864 PCC polycystin catio 41.6 18 0.00039 37.8 2.1 32 176-207 1-32 (2740)
90 TIGR00864 PCC polycystin catio 22.7 56 0.0012 34.6 1.9 32 7-38 1-32 (2740)
91 PF05725 FNIP: FNIP Repeat; I 21.3 1.5E+02 0.0032 15.7 3.1 11 25-35 12-22 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.1e-28 Score=222.21 Aligned_cols=238 Identities=38% Similarity=0.575 Sum_probs=146.7
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++.+|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 45555666665555566666666666666666666665566666666666666666666665556666666666666666
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
+|.+...++..+ ..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 221 ~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 221 YNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred CCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 666654444433 3566666666666666555555666666666666666666555555566666666666666666555
Q ss_pred ccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhc
Q 045571 162 IPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQF 240 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 240 (260)
.|..+..+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.+|+++..
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 5555666666666666666665555555666666666666666666555555666666666666666555555544443
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=4.2e-30 Score=207.50 Aligned_cols=256 Identities=23% Similarity=0.262 Sum_probs=174.4
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
|.|+.|+++.|.|.++....|+.=.++++|+|++|+|+......|.++.+|..|.+++|.++...+..|.++++|+.|++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 34667777777777665666666677777777777777666777777777777777777777666677777777777777
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCccc------------------------CCCCccccCCCCCcEEEccCccCCC
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFH------------------------GGIPSALSKCTYLQILSLSFNDFSG 136 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------~~~~~~~~~~~~L~~L~l~~~~~~~ 136 (260)
.+|.+. .+....|..+++|+.|.+.+|.+. ......+.++++|+.|++++|.|..
T Consensus 229 nrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 229 NRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred ccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 777765 444445555555555555555544 3333344455566666666666655
Q ss_pred CCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCc------------------------CcC---CCccc
Q 045571 137 AIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN------------------------LQG---GIPQE 189 (260)
Q Consensus 137 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------------------l~~---~~~~~ 189 (260)
+-++....+++|+.|+++.|.+....+..|..+..|++|+++.|. +.. ....+
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 555666666777777777777765444444444444444444443 321 12335
Q ss_pred ccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccc---------ccccccccccceeee
Q 045571 190 LGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYS---------SSACFCNLYSFACSL 257 (260)
Q Consensus 190 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~---------~l~~~~~~~~~~~~~ 257 (260)
|.+++.|+.|.+.||++..+..++|.++++|+.|+|.+|.+.++-+++|..+. +.-|+|+++|+..|.
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence 66778888888899999877888999999999999999999999898888762 234999999987664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=9e-28 Score=218.12 Aligned_cols=238 Identities=38% Similarity=0.542 Sum_probs=154.3
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 36788888888877777777888888888888888777777777777888888888877777677777777777778877
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
++|.+....+..+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 244 ~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 244 VYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred cCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 7777664444433 466777777777776665555666666667777777666665566666666666666666666655
Q ss_pred cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh
Q 045571 161 EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
..+..+..+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++++.|++++|.+.+.+|..+.
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 5555555666666666666665555555555555555555555555444444444444444444444444433333333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3e-26 Score=185.40 Aligned_cols=241 Identities=25% Similarity=0.235 Sum_probs=177.3
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
-+.|++++|.+.+..+..|..+++|+++++.+|.++ .+|.......+++.|++.+|.++.+..+.+..++.||.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 356999999999999999999999999999999998 6677666677899999999998888888888899999999999
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEI 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 162 (260)
|.+. .++...|..-.++++|+++.|.++......|..+.+|..|.++.|+++...+..|..+++|+.|++.+|.+....
T Consensus 159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 9887 777777767778999999988888666677888888888888888887555556677777777777777665322
Q ss_pred cccccCCc------------------------cccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCC
Q 045571 163 PREFGSLA------------------------ELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA 218 (260)
Q Consensus 163 ~~~~~~~~------------------------~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 218 (260)
-..|..++ ++++|+++.|++...-..++-++++|++|+++.|.+..+-++..+.++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 33444444 445555555555444444555556666666666666655555566666
Q ss_pred cccEEEcCCCccccchhHhhhcccccc
Q 045571 219 KLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 219 ~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+|+.|+|++|.++...++++.-++.|+
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhh
Confidence 666666666666666666666655544
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-24 Score=167.62 Aligned_cols=239 Identities=24% Similarity=0.299 Sum_probs=150.9
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccC-cccCCCCchhhccCCCccEEecc
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRE-NQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
...+++..|+|+.+.+.+|+.+++||+|+|++|.|+.+.|.+|.+++.+..|-+-+ |+++......|..+.+++.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 45688899999988888999999999999999999988899999998887776555 88886666778888888888777
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCC--------------------------
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS-------------------------- 135 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------- 135 (260)
-+++. .+....+..++++..|.+..+.+...-...+..+..++.+.+..|.+.
T Consensus 149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 77776 677777777777777777766665333335555555555555444311
Q ss_pred -----------------------------------CCCc-ccccCCCcccEEEcCCccccccccccccCCccccEEEccC
Q 045571 136 -----------------------------------GAIP-KDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRE 179 (260)
Q Consensus 136 -----------------------------------~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (260)
++.| ..|..+++|++|++++|.+++....+|.....+++|.+.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 0001 1233344455555555544444444444444455555555
Q ss_pred CcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccccccccccceee
Q 045571 180 SNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSACFCNLYSFACS 256 (260)
Q Consensus 180 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (260)
|++.......|.+...|++|++.+|+++..-|+.|.....|..|++-.|++. |+|.+.|+.-|
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~--------------CnC~l~wl~~W 370 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN--------------CNCRLAWLGEW 370 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc--------------CccchHHHHHH
Confidence 5444333344444455555555555554444444544555555555555554 99999987544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=4.3e-23 Score=169.06 Aligned_cols=236 Identities=25% Similarity=0.365 Sum_probs=123.1
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
|+.|++++|++. ++|..+...+++-+|+|++|+|.....+.|.++.-|-.|++++|++. ..|.....+..|++|.+++
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCC
Confidence 455566666655 45555555566666666666665332233345555666666666655 3444455666666666666
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCccc-CCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFH-GGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
|++. .........+++|+.|.++++.-+ ...|.++..+.+|..++++.|.+. +.|+.+-.+++|+.|++++|.++ .
T Consensus 183 NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-e 259 (1255)
T KOG0444|consen 183 NPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-E 259 (1255)
T ss_pred Chhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-e
Confidence 6654 222222234555555555544422 234445555556666666666655 55666666666666666666655 3
Q ss_pred ccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC------------------------CcchhccCC
Q 045571 162 IPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG------------------------EIPREFSNL 217 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~~~~~~~~ 217 (260)
+........+|++|++++|+++ .+|+++..+++|+.|...+|+++- ..|..+..|
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC 338 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC 338 (1255)
T ss_pred eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh
Confidence 3333334445555555555554 344444444444444444444431 445555555
Q ss_pred CcccEEEcCCCccccchhHhhhcccccc
Q 045571 218 AKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+.|+.|.|+.|.+- ..|+++.-+..++
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcCCcc
Confidence 55555555555533 2344444444433
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.2e-22 Score=166.40 Aligned_cols=227 Identities=30% Similarity=0.412 Sum_probs=169.7
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCC------------------
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSG------------------ 63 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~------------------ 63 (260)
++-+|++++|+|..+....|.++..|-+|+|++|++. ..|+.+..+.+|++|.+++|.+..
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 4568999999999666666779999999999999998 778888999999999999886532
Q ss_pred -------CCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCC
Q 045571 64 -------AFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG 136 (260)
Q Consensus 64 -------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 136 (260)
..|.++..+.+|+.++++.|.+. .+|.-++ .+++|+.|++++|.++ ..........++++|+++.|+++
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT- 281 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-
Confidence 13333444455666666666665 5555554 5666677777766665 33333444456677777777766
Q ss_pred CCcccccCCCcccEEEcCCcccc-ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhcc
Q 045571 137 AIPKDIGNLTKLMELYLGRNRLQ-GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFS 215 (260)
Q Consensus 137 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 215 (260)
.+|+++++++.|+.|.+.+|.+. +-.|+.+..+..|+.+..++|.+. ..|..+..|.+|+.|.++.|++. .+|.++.
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence 67777777777777777777665 346777777778888888888776 77889999999999999999998 6788899
Q ss_pred CCCcccEEEcCCCccccchh
Q 045571 216 NLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 216 ~~~~L~~L~l~~n~~~~~~~ 235 (260)
-++.|..|+++.|+-.-..|
T Consensus 360 lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hcCCcceeeccCCcCccCCC
Confidence 99999999999998443443
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=1.3e-20 Score=146.20 Aligned_cols=234 Identities=23% Similarity=0.244 Sum_probs=189.4
Q ss_pred ecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC-CCCC
Q 045571 8 ISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ-NTLS 86 (260)
Q Consensus 8 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~ 86 (260)
-++.+++ .+|..+. +..+++.|..|+|+...+.+|..+++|++|++++|.++.+.|.+|..+.++..|.+++ |+|.
T Consensus 53 Cr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3444555 5666655 6789999999999988889999999999999999999999999999999998888777 8888
Q ss_pred CccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc-------
Q 045571 87 GEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ------- 159 (260)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------- 159 (260)
.++...|..+..++.|.+..+.+.......+..++++..|.+.+|.+..+....+.....++++.+..|.+.
T Consensus 130 -~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 -DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred -hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 899999999999999999999888788889999999999999999876333224444444444444333210
Q ss_pred ------------------------------------------------------cc-ccccccCCccccEEEccCCcCcC
Q 045571 160 ------------------------------------------------------GE-IPREFGSLAELELMSLRESNLQG 184 (260)
Q Consensus 160 ------------------------------------------------------~~-~~~~~~~~~~L~~L~l~~~~l~~ 184 (260)
.. ....|..+++|+++++++|++..
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 00 01245677899999999999988
Q ss_pred CCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 185 GIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 185 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+-+.+|.+..+++.|.+..|++...-.+.|..+..|+.|+|.+|.|+.+.|-+|..+.+|.
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 8888999999999999999999877778888999999999999999999998888877765
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=1.4e-17 Score=153.01 Aligned_cols=234 Identities=20% Similarity=0.204 Sum_probs=124.6
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|+.|+++++.+. ..+..+..+++|+.++++++......| .+..+++|++|++++|......|..+.++++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4555666666555 344555566677777776654333333 35566677777776665444556666667777777776
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCc--------------------cc-----------------------
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPS--------------------AL----------------------- 118 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~----------------------- 118 (260)
+|.....++..+ .+++|+.|.+++|......+. .+
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 654333444433 355555555555432111111 00
Q ss_pred -------cCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCccccc
Q 045571 119 -------SKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELG 191 (260)
Q Consensus 119 -------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 191 (260)
...++|+.|++++|......|..+.++++|+.|++++|...+.+|... .+++|+.|++++|......|.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--- 843 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--- 843 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---
Confidence 001234444454444333445555555555666655553222333332 345555555555533222222
Q ss_pred CcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccccc
Q 045571 192 NLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSS 244 (260)
Q Consensus 192 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 244 (260)
..++++.|++++|.+. .+|..+..+++|+.|++++|+--..+|..+..++.|
T Consensus 844 ~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 844 ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 1246777777777776 557777888888888888865333344444444444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=2.9e-21 Score=150.33 Aligned_cols=130 Identities=27% Similarity=0.502 Sum_probs=67.2
Q ss_pred CCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccc-cccCCccccEE
Q 045571 97 LPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPR-EFGSLAELELM 175 (260)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L 175 (260)
+..|++++...|.+. ..|..++.+.+|+.|++..|++. .+| .|.+|..|.+++++.|.+. ..|. ....++++..|
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence 444555555444443 44444555555555555555554 444 4555555555555555554 2222 22345555555
Q ss_pred EccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccc
Q 045571 176 SLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233 (260)
Q Consensus 176 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 233 (260)
++.+|++. ..|..+.-+.+|..|++++|.++ .+|..++++ .|++|.+.||+++++
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH
Confidence 66555554 34444444455556666666655 345555555 566666666665443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.1e-20 Score=145.62 Aligned_cols=228 Identities=31% Similarity=0.478 Sum_probs=198.4
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
.+.++++.+++.. ..|.+++.+..++.++.+.|.+. ..|..+..++.+..++.+.+.+. ..+..++.+..++.++..
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 4678899999888 68888899999999999999998 78889999999999999999887 667778889999999999
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
+|++. ..|.+++ .+.++..+.+.++......+..+. ++.|+.+++..|-++ .+|..++.+.+|+.|++..|.+. .
T Consensus 146 ~N~i~-slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 146 NNQIS-SLPEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred ccccc-cCchHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 99998 8888886 788899999999999855555555 889999999999887 78888999999999999999997 6
Q ss_pred ccccccCCccccEEEccCCcCcCCCccc-ccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhc
Q 045571 162 IPREFGSLAELELMSLRESNLQGGIPQE-LGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQF 240 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 240 (260)
.| .|.++..|+++++..|.+. .+|++ ...++++.+|++.+|+++ ..|..+..+.+|+.||+++|.+++ .|.++++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence 67 7889999999999999998 55554 458899999999999999 678888899999999999999984 4666666
Q ss_pred c
Q 045571 241 Y 241 (260)
Q Consensus 241 l 241 (260)
+
T Consensus 297 l 297 (565)
T KOG0472|consen 297 L 297 (565)
T ss_pred c
Confidence 6
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.7e-18 Score=138.85 Aligned_cols=233 Identities=24% Similarity=0.264 Sum_probs=158.4
Q ss_pred cccEEEecCCccCCC----ccccccCCCCccEEEccCCcCcc------ccchhhhcCCCCcEEEccCcccCCCCchhhcc
Q 045571 2 RVTVLNISRLNLTGT----IPSQLGNLSSLQSLNLSFNRLSG------SIPSAIFTMYTLKYVSFRENQLSGAFPSFIFN 71 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 71 (260)
+|++++++++.+++. ++..+...+++++++++++.+.. ..+.++..+++|++|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477888888887532 44556677788999988887652 23445667889999999888876555555555
Q ss_pred CCC---ccEEeccCCCCCCccchh---hhcCC-CcceEEecCCCcccCC----CCccccCCCCCcEEEccCccCCCC---
Q 045571 72 KSS---LQHLDFSQNTLSGEIPAN---ICSNL-PFLEYISLSKNMFHGG----IPSALSKCTYLQILSLSFNDFSGA--- 137 (260)
Q Consensus 72 l~~---L~~L~l~~~~~~~~~~~~---~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~--- 137 (260)
+.+ |++|++++|.+.+..... .+..+ ++|+.+++++|.+... ....+..++.++.|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 544 999999888776311111 12345 7889999998887632 223445567899999998887632
Q ss_pred -CcccccCCCcccEEEcCCcccccc----ccccccCCccccEEEccCCcCcCCCcccc-----cCcCCCcEEEcccCCCC
Q 045571 138 -IPKDIGNLTKLMELYLGRNRLQGE----IPREFGSLAELELMSLRESNLQGGIPQEL-----GNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 138 -~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~l~~n~l~ 207 (260)
.+..+...++|+.|++++|.+.+. +...+..+++|++|++++|.+.+.....+ ...+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 222344557899999998877522 34455667889999999988764222111 12478999999999886
Q ss_pred C----CcchhccCCCcccEEEcCCCccccch
Q 045571 208 G----EIPREFSNLAKLEMMSLSENNLQGVI 234 (260)
Q Consensus 208 ~----~~~~~~~~~~~L~~L~l~~n~~~~~~ 234 (260)
. .....+...++|+.+++++|.+.+..
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 2 23345566688999999999988653
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=2.6e-16 Score=144.66 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=114.8
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|+.|.+.++.+. ..|..| .+.+|++|++.++.+. ..+..+..+++|++++++++......| .+..+++|+.|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 3666666666655 455555 4577888888888776 456666778888888888765333444 36677888888888
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
+|.....++..+ ..+++|+.|++++|......|..+ .+++|+.|++++|......|.. ..+|+.|++++|.+. .
T Consensus 666 ~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 666 DCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E 739 (1153)
T ss_pred CCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence 876554566554 477888888888765443444433 5667777777766433222221 234455555554433 1
Q ss_pred ccccc------------------------------cCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCC
Q 045571 162 IPREF------------------------------GSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNN 205 (260)
Q Consensus 162 ~~~~~------------------------------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 205 (260)
+|..+ ..+++|+.|++++|.....+|..+.++++|+.|++++|.
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 22110 112345555555554444455555666666666666654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=3.3e-19 Score=151.59 Aligned_cols=237 Identities=28% Similarity=0.414 Sum_probs=165.8
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
++++++++.+.+. ..|+.+..+.+|+.+....|.+. ..|..+....+|+.|.+..|.+. ..+........|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4566667766666 34466777777777777777664 45555555666666666666655 344445556777778877
Q ss_pred CCCCCCccchhhhc-------------------------CCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCC
Q 045571 82 QNTLSGEIPANICS-------------------------NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG 136 (260)
Q Consensus 82 ~~~~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 136 (260)
.|.+. ..++..+. ..+.|+.|++.+|.+++.....+..+..|+.|++++|++..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 77776 44443332 22346666666666665555566777888899999988875
Q ss_pred CCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCC-cchhcc
Q 045571 137 AIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGE-IPREFS 215 (260)
Q Consensus 137 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~ 215 (260)
.....+.++..|+.|++++|.++ .+|..+..++.|++|....|.+. ..| .+..++.|+.+|++.|.++.. .+...
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~- 473 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL- 473 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-
Confidence 55556778888888999999887 77788888888888888888887 445 777889999999999988753 33332
Q ss_pred CCCcccEEEcCCCccccchhHhhhccccccc
Q 045571 216 NLAKLEMMSLSENNLQGVIINFLQFYSSSAC 246 (260)
Q Consensus 216 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~ 246 (260)
.-|+|++||++||.-...+-+.+..++.+.+
T Consensus 474 p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ 504 (1081)
T ss_pred CCcccceeeccCCcccccchhhhHHhhhhhh
Confidence 3389999999999876667677766666553
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=6.4e-16 Score=134.41 Aligned_cols=202 Identities=25% Similarity=0.429 Sum_probs=97.1
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
...|+++++.++ .+|..+. +.++.|++++|.++ ..|..+. .+|++|++++|.+.. .|..+ ...|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECcC
Confidence 455666666666 3444433 45667777777666 3344332 366677776666652 33322 23566666666
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEI 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 162 (260)
|.+. .++..+. .+|+.|++++|.+. ..+..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+. .+
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cC
Confidence 6665 4554432 35666666666654 3333222 35666666666655 2332221 24455555555444 22
Q ss_pred cccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCcccc
Q 045571 163 PREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 232 (260)
|..+ .++|+.|++.+|.+.. +|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.+.+
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence 2211 1344444444444442 222221 34444444444444 223222 1344444444444443
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=8.4e-18 Score=134.89 Aligned_cols=230 Identities=19% Similarity=0.228 Sum_probs=165.6
Q ss_pred CcccEEEecCCccCC------CccccccCCCCccEEEccCCcCccccchhhhcCCC---CcEEEccCcccCCC----Cch
Q 045571 1 HRVTVLNISRLNLTG------TIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYT---LKYVSFRENQLSGA----FPS 67 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~l~~~----~~~ 67 (260)
++++.++++++.+.+ ..+..+..+++|++|+++++.+....+..+..+.+ |++|++++|.+... ...
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 357889998887652 23456778899999999999987656666665555 99999999987632 223
Q ss_pred hhccC-CCccEEeccCCCCCCccch---hhhcCCCcceEEecCCCcccCC----CCccccCCCCCcEEEccCccCCCC--
Q 045571 68 FIFNK-SSLQHLDFSQNTLSGEIPA---NICSNLPFLEYISLSKNMFHGG----IPSALSKCTYLQILSLSFNDFSGA-- 137 (260)
Q Consensus 68 ~~~~l-~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-- 137 (260)
.+..+ ++|+.|++++|.+...... ..+..+++|++|+++++.+... ....+...++|+.|++++|.+.+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 44566 8999999999998732222 2334667899999999987632 222345567999999999988632
Q ss_pred --CcccccCCCcccEEEcCCcccccccccccc-----CCccccEEEccCCcCcC----CCcccccCcCCCcEEEcccCCC
Q 045571 138 --IPKDIGNLTKLMELYLGRNRLQGEIPREFG-----SLAELELMSLRESNLQG----GIPQELGNLAKLEMLQLFQNNL 206 (260)
Q Consensus 138 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~l 206 (260)
....+..+++|+.|++++|.+.+.....+. ..+.|++|++.+|.+.+ .....+..+++|+.+++++|.+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 234556778999999999988742222211 24789999999999863 2234556668999999999999
Q ss_pred CCC----cchhccCC-CcccEEEcCCCcc
Q 045571 207 TGE----IPREFSNL-AKLEMMSLSENNL 230 (260)
Q Consensus 207 ~~~----~~~~~~~~-~~L~~L~l~~n~~ 230 (260)
... ....+... +.++++++.+|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 291 GEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 854 33334333 7899999988864
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=9.6e-16 Score=132.87 Aligned_cols=88 Identities=26% Similarity=0.373 Sum_probs=64.9
Q ss_pred cccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcC
Q 045571 147 KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLS 226 (260)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 226 (260)
+|+.|++++|.+. ..|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|..+..+++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 5667777777665 33332 2467788888887763 3432 246788888889888 568888899999999999
Q ss_pred CCccccchhHhhhcccc
Q 045571 227 ENNLQGVIINFLQFYSS 243 (260)
Q Consensus 227 ~n~~~~~~~~~~~~l~~ 243 (260)
+|++.+..+.++..+.+
T Consensus 454 ~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 454 GNPLSERTLQALREITS 470 (788)
T ss_pred CCCCCchHHHHHHHHhc
Confidence 99999999888866544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=5.3e-16 Score=134.92 Aligned_cols=206 Identities=23% Similarity=0.408 Sum_probs=113.5
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|+.|++++|.++. +|..+. ++|+.|++++|.++ ..|..+. .+|+.|++++|.+. ..|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 57888999998884 454443 58888999888887 3454443 46888888888776 3444432 467888888
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCC--------------------CCccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG--------------------AIPKD 141 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--------------------~~~~~ 141 (260)
+|++. .++..+. ++|+.|++++|.+.. .+..+. .+|+.|++++|.+.. .+|..
T Consensus 271 ~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 271 HNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS 343 (754)
T ss_pred CCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChh
Confidence 88776 5555432 467788887777652 222221 234445555554441 22222
Q ss_pred ccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcch----hccCC
Q 045571 142 IGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR----EFSNL 217 (260)
Q Consensus 142 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~ 217 (260)
+. ++|+.|++++|.+. .+|..+ .++|+.|++.+|.+.. +|..+. ..|+.|++++|++. .+|. ..+..
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 21 34555555555444 223222 1345555555555542 222222 23555555555554 2222 22334
Q ss_pred CcccEEEcCCCcccc
Q 045571 218 AKLEMMSLSENNLQG 232 (260)
Q Consensus 218 ~~L~~L~l~~n~~~~ 232 (260)
+.+..+++.+|++..
T Consensus 415 ~~l~~L~L~~Npls~ 429 (754)
T PRK15370 415 PQPTRIIVEYNPFSE 429 (754)
T ss_pred CCccEEEeeCCCccH
Confidence 556666666666653
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-18 Score=121.11 Aligned_cols=182 Identities=30% Similarity=0.593 Sum_probs=118.2
Q ss_pred hcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCc
Q 045571 46 FTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQ 125 (260)
Q Consensus 46 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 125 (260)
.++.+++.|-+++|+++ ..|..+..+.+|+.|++.+|++. .+|..+. ++++|++|+++-+.+. ..|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence 44555566666666665 33444556666666666666665 5555553 5666666666666654 5666777777777
Q ss_pred EEEccCccCC-CCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccC
Q 045571 126 ILSLSFNDFS-GAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQN 204 (260)
Q Consensus 126 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 204 (260)
.|++.+|++. ..+|..|..+..|+.|++++|.+. ..|..+..+++|+.|.+.+|.+. .+|..++.++.|+.|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 7777777664 345666667777777777777776 66666677777777777777765 56777777778888888888
Q ss_pred CCCCCcchhccCCC---cccEEEcCCCccccch
Q 045571 205 NLTGEIPREFSNLA---KLEMMSLSENNLQGVI 234 (260)
Q Consensus 205 ~l~~~~~~~~~~~~---~L~~L~l~~n~~~~~~ 234 (260)
+++ .+|..++.+. +-+.+.+.+|++...+
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 877 4455555433 3345556667654433
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=9.4e-18 Score=116.69 Aligned_cols=166 Identities=30% Similarity=0.533 Sum_probs=146.5
Q ss_pred ccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCccc
Q 045571 70 FNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLM 149 (260)
Q Consensus 70 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 149 (260)
.+...+..|.+++|++. .++..+. .+.+|+.|++.++.+. ..|..++.+++|+.|+++.|++. ++|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 35567788899999998 7888875 7999999999999997 77888999999999999999988 8999999999999
Q ss_pred EEEcCCccccc-cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCC
Q 045571 150 ELYLGRNRLQG-EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSEN 228 (260)
Q Consensus 150 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 228 (260)
.|++.+|.+.+ .+|..|..+..|+.|.+++|.+. .+|..++.+++|+.|.+.+|.+. .+|+.++.+..|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998873 46888888899999999999987 77888999999999999999998 67999999999999999999
Q ss_pred ccccchhHhhhccc
Q 045571 229 NLQGVIINFLQFYS 242 (260)
Q Consensus 229 ~~~~~~~~~~~~l~ 242 (260)
.++ ++|+.++.+.
T Consensus 184 rl~-vlppel~~l~ 196 (264)
T KOG0617|consen 184 RLT-VLPPELANLD 196 (264)
T ss_pred eee-ecChhhhhhh
Confidence 987 5566665543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=4.7e-17 Score=138.72 Aligned_cols=239 Identities=28% Similarity=0.280 Sum_probs=161.8
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+++.|+.++|.++...+. +...++++++++.+.+. ..|..++.+.+|+.++...|.+. ..+..+...++|+.+.+.
T Consensus 220 ~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 455566666655522222 23356777777777776 44566677777777777777764 556666667777777777
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCcccc-------------------------CCCCCcEEEccCccCCC
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALS-------------------------KCTYLQILSLSFNDFSG 136 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~ 136 (260)
.|.+. .++.... ....|++|++..|.+.......+. .+..|+.|++.+|.+++
T Consensus 296 ~nel~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 296 YNELE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 77765 4555442 477788888888777532211111 12346667777777766
Q ss_pred CCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccC
Q 045571 137 AIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN 216 (260)
Q Consensus 137 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 216 (260)
..-..+.+..+|+.|++++|.+.......+.++..|++|++++|.+. .+|..+..+..|++|...+|.+. ..| .+..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 55455667778888888888887555667778888888888888887 66778888888888888888887 556 6788
Q ss_pred CCcccEEEcCCCccccchhHhhhc---ccccccccc
Q 045571 217 LAKLEMMSLSENNLQGVIINFLQF---YSSSACFCN 249 (260)
Q Consensus 217 ~~~L~~L~l~~n~~~~~~~~~~~~---l~~l~~~~~ 249 (260)
++.|+.+|++.|.++.+..+..-. |+-|..+|+
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 999999999999988777443333 444444444
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=4.8e-14 Score=122.46 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=33.7
Q ss_pred cccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 171 ELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 171 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+|+.|++++|.+.. +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.++. +|..+..+..+.
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSET 448 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCC
Confidence 45555555555542 2221 2456666666666653 3332 2355666666666663 455555554443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.43 E-value=2.8e-14 Score=109.76 Aligned_cols=229 Identities=21% Similarity=0.249 Sum_probs=163.2
Q ss_pred cccEEEecCCccCC----CccccccCCCCccEEEccCCcC---ccccchh-------hhcCCCCcEEEccCcccCCCCch
Q 045571 2 RVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSFNRL---SGSIPSA-------IFTMYTLKYVSFRENQLSGAFPS 67 (260)
Q Consensus 2 ~L~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~-------l~~l~~L~~L~l~~~~l~~~~~~ 67 (260)
.++.+++++|.|.. .....+...++|++.+++.... ....|.+ +..+++|+++++++|-+....+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 46778899988862 3445667778888888887532 2233433 34678999999999987654443
Q ss_pred ----hhccCCCccEEeccCCCCCCccchh------------hhcCCCcceEEecCCCcccCCCC----ccccCCCCCcEE
Q 045571 68 ----FIFNKSSLQHLDFSQNTLSGEIPAN------------ICSNLPFLEYISLSKNMFHGGIP----SALSKCTYLQIL 127 (260)
Q Consensus 68 ----~~~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L 127 (260)
.+.++..|++|.+.+|.+....... -..+-++|+++...+|.+..... ..+...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 3456788999999999886322111 11245779999999888763322 355667889999
Q ss_pred EccCccCCC----CCcccccCCCcccEEEcCCccccc----cccccccCCccccEEEccCCcCcCCCcccc-----cCcC
Q 045571 128 SLSFNDFSG----AIPKDIGNLTKLMELYLGRNRLQG----EIPREFGSLAELELMSLRESNLQGGIPQEL-----GNLA 194 (260)
Q Consensus 128 ~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~ 194 (260)
.+..|.+.. .+...+..+++|+.|++.+|.++. .+...++.+++|+.+++.+|.+......++ ...+
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 999998752 233467789999999999998763 345577788899999999998876432222 3468
Q ss_pred CCcEEEcccCCCCCC----cchhccCCCcccEEEcCCCcc
Q 045571 195 KLEMLQLFQNNLTGE----IPREFSNLAKLEMMSLSENNL 230 (260)
Q Consensus 195 ~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~ 230 (260)
.|+++.+.+|-++.. +...+...|.|++|+|++|.+
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999999999998742 233445679999999999998
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=8.5e-13 Score=104.53 Aligned_cols=204 Identities=21% Similarity=0.200 Sum_probs=89.0
Q ss_pred ccEEEecCCccCCCcc--ccccCCCCccEEEccCCcCcc--ccchhhhcCCCCcEEEccCcccCCCCchhh-ccCCCccE
Q 045571 3 VTVLNISRLNLTGTIP--SQLGNLSSLQSLNLSFNRLSG--SIPSAIFTMYTLKYVSFRENQLSGAFPSFI-FNKSSLQH 77 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~ 77 (260)
|+.+.+.++.+. ..+ .....+++++.|+++.|-+.. .+......+|+|+.|+++.|++........ ..++.|..
T Consensus 123 L~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 123 LREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 445555555443 111 234455555555555554432 122222355555555555555432111111 13345555
Q ss_pred EeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCC-cccccCCCcccEEEcCCc
Q 045571 78 LDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAI-PKDIGNLTKLMELYLGRN 156 (260)
Q Consensus 78 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 156 (260)
|.++.|.+.+.-...+...+|.|+.|++..|............+..|+.|++++|.+.+.. -.....++.|..|+++.+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 5555555543333333445555555555555311011111223344555555555544211 123344455555555555
Q ss_pred ccccc-cccc-----ccCCccccEEEccCCcCcCC-CcccccCcCCCcEEEcccCCCC
Q 045571 157 RLQGE-IPRE-----FGSLAELELMSLRESNLQGG-IPQELGNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 157 ~~~~~-~~~~-----~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~l~ 207 (260)
++... .+.+ ...+++|+.|++..|++++. ....+...++|+++.+..|.+.
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 55421 1221 22344555666655555421 1122233445555555554443
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.8e-13 Score=105.43 Aligned_cols=184 Identities=22% Similarity=0.213 Sum_probs=86.3
Q ss_pred CCCCccEEEccCCcCccccc-hhhhcCCCCcEEEccCcccCC--CCchhhccCCCccEEeccCCCCCCccchhhhcCCCc
Q 045571 23 NLSSLQSLNLSFNRLSGSIP-SAIFTMYTLKYVSFRENQLSG--AFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 99 (260)
++.+|++..+.++.+..... .....+++++.|++++|-+.. ........+++|+.|+++.|.+.-......-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44556666666665542111 244566666666666654432 112233455666666666665542222222224555
Q ss_pred ceEEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc-ccccccCCccccEEEc
Q 045571 100 LEYISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE-IPREFGSLAELELMSL 177 (260)
Q Consensus 100 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 177 (260)
|+.|.+++|+++.... .....+|+++.|++..|....+.......++.|+.|++++|.+... .......++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6666666666542211 2223455666666655531111111222334555666665554311 1123334555555555
Q ss_pred cCCcCcCC-Cccc-----ccCcCCCcEEEcccCCC
Q 045571 178 RESNLQGG-IPQE-----LGNLAKLEMLQLFQNNL 206 (260)
Q Consensus 178 ~~~~l~~~-~~~~-----~~~~~~L~~L~l~~n~l 206 (260)
+.+.+.+. .|+. ...+++|+.|++..|++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 55555431 1111 23345555555555555
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.9e-13 Score=111.54 Aligned_cols=195 Identities=28% Similarity=0.481 Sum_probs=150.0
Q ss_pred CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceE
Q 045571 23 NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 102 (260)
.+.-....+++.|++. ++|..++.+..|+.+.+..|.+. ..+..+.++..|..++++.|++. ..+..++ .++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-cee
Confidence 4455566788888887 67777888888888888888776 56677788888889999999887 7777775 344 888
Q ss_pred EecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcC
Q 045571 103 ISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNL 182 (260)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 182 (260)
|.+++|.++ ..+..++....|..++.+.|.+. .+|..++++.+|+.|.+.+|++. .+|..+..+ .|..|+++.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 888888887 66777777788888888988887 67788888888998989888887 666666644 488899999988
Q ss_pred cCCCcccccCcCCCcEEEcccCCCCCCcchhc---cCCCcccEEEcCCC
Q 045571 183 QGGIPQELGNLAKLEMLQLFQNNLTGEIPREF---SNLAKLEMMSLSEN 228 (260)
Q Consensus 183 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n 228 (260)
. .+|..|..++.|++|.+.+|.+. ..|..+ +...=.++|+..-|
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7 77888899999999999999888 444433 23334466666655
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=7.6e-13 Score=101.95 Aligned_cols=217 Identities=19% Similarity=0.247 Sum_probs=158.2
Q ss_pred cccccCCCCccEEEccCCcCccc----cchhhhcCCCCcEEEccCccc---CCCCchhh-------ccCCCccEEeccCC
Q 045571 18 PSQLGNLSSLQSLNLSFNRLSGS----IPSAIFTMYTLKYVSFRENQL---SGAFPSFI-------FNKSSLQHLDFSQN 83 (260)
Q Consensus 18 ~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l---~~~~~~~~-------~~l~~L~~L~l~~~ 83 (260)
......+..++++++++|.+... ..+.+.+.++|+..++++.-. ....|..+ ...++|+.++++.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34456778999999999998733 445566788999999886422 12233333 34569999999999
Q ss_pred CCCCccch---hhhcCCCcceEEecCCCcccCCCC-------------ccccCCCCCcEEEccCccCCCC----Cccccc
Q 045571 84 TLSGEIPA---NICSNLPFLEYISLSKNMFHGGIP-------------SALSKCTYLQILSLSFNDFSGA----IPKDIG 143 (260)
Q Consensus 84 ~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 143 (260)
-+...... .+.+++..|++|.+.+|.+..... .....-+.|+++....|.+.+. ....+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 88643333 345678899999999998863221 2334567899999999987632 234567
Q ss_pred CCCcccEEEcCCccccc----cccccccCCccccEEEccCCcCcC----CCcccccCcCCCcEEEcccCCCCCCcchhc-
Q 045571 144 NLTKLMELYLGRNRLQG----EIPREFGSLAELELMSLRESNLQG----GIPQELGNLAKLEMLQLFQNNLTGEIPREF- 214 (260)
Q Consensus 144 ~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~- 214 (260)
..+.|+.+.+..|+|.. .....+..+++|+.|++.+|.++. .+...+..+++|+.|++++|.+.......+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 77899999999998762 234577899999999999998764 234566778899999999999986544333
Q ss_pred ----cCCCcccEEEcCCCccccch
Q 045571 215 ----SNLAKLEMMSLSENNLQGVI 234 (260)
Q Consensus 215 ----~~~~~L~~L~l~~n~~~~~~ 234 (260)
...|+|+.+++.+|.++...
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHH
Confidence 45799999999999886443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=7.3e-13 Score=108.20 Aligned_cols=178 Identities=28% Similarity=0.506 Sum_probs=149.2
Q ss_pred CCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEE
Q 045571 48 MYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQIL 127 (260)
Q Consensus 48 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 127 (260)
+.--...+++.|++. +.|..+..+..|+.+.++.|.+. .++..+. .+..|.+++++.|.+. ..+..+..++ |+.+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 333455688888887 67777888888999999999987 7777765 7899999999999986 7777666665 7899
Q ss_pred EccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCC
Q 045571 128 SLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 207 (260)
.+++|+++ .+|+.++..+.|..|+.+.|.+. ..+..+.++.+|+.+.+..|++.. +|..+. .-.|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee
Confidence 99999998 78888888889999999999988 677788889999999999999984 455554 567889999999998
Q ss_pred CCcchhccCCCcccEEEcCCCccccchh
Q 045571 208 GEIPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 208 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
.+|..|.++..|++|-|++|++++...
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChH
Confidence 778899999999999999999996554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=6.3e-11 Score=97.92 Aligned_cols=199 Identities=31% Similarity=0.485 Sum_probs=137.9
Q ss_pred EEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCC-CccEEeccCCCCCCccchhhhcCCCcceEEecCC
Q 045571 29 SLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKS-SLQHLDFSQNTLSGEIPANICSNLPFLEYISLSK 107 (260)
Q Consensus 29 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 107 (260)
.+....+.+. .....+.....++.+++.++.+.. .+....... +|+.|+++.+.+. .++..+ ..+++|+.|+++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhh-hccccccccccCC
Confidence 4566666553 123334555778888888887763 333444553 7888888888887 554333 3688888888888
Q ss_pred CcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCc
Q 045571 108 NMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIP 187 (260)
Q Consensus 108 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 187 (260)
|.+. ..+......+.++.+++++|++. ..|........|+++.+++|.+. ..+..+..+..+..+.+.++++. ..+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 8886 44444446778888888888887 45554444556888888888644 55666667777888887777775 335
Q ss_pred ccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHh
Q 045571 188 QELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINF 237 (260)
Q Consensus 188 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 237 (260)
..+..++.++.|++++|.+... +. ++...+++.|+++++.+....+..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 6667778889999999988844 33 778889999999988877665433
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=4e-11 Score=86.31 Aligned_cols=130 Identities=28% Similarity=0.230 Sum_probs=48.3
Q ss_pred ccCCCCccEEEccCCcCccccchhhh-cCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCc
Q 045571 21 LGNLSSLQSLNLSFNRLSGSIPSAIF-TMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99 (260)
Q Consensus 21 ~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 99 (260)
+.+...+++|+|.++.++.. . .+. .+.+|+.|++++|.+... +.+..+++|+.|++++|.+. .+...+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 33445678888888888732 2 344 567888888888888743 34667888888888888887 555444445788
Q ss_pred ceEEecCCCcccCCC-CccccCCCCCcEEEccCccCCCCC---cccccCCCcccEEEcCC
Q 045571 100 LEYISLSKNMFHGGI-PSALSKCTYLQILSLSFNDFSGAI---PKDIGNLTKLMELYLGR 155 (260)
Q Consensus 100 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~ 155 (260)
|+.|++++|.+.... ...+..+++|+.|++.+|.+.... ...+..+|+|+.||-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 888988888886422 245677888899999888876321 12345677888876543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=1.1e-10 Score=96.55 Aligned_cols=180 Identities=32% Similarity=0.489 Sum_probs=111.5
Q ss_pred ccCCCCccEEEccCCcCccccchhhhcCC-CCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCc
Q 045571 21 LGNLSSLQSLNLSFNRLSGSIPSAIFTMY-TLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99 (260)
Q Consensus 21 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 99 (260)
+...+.++.+++.++.++ ..+....... +|+.|+++++.+. ..+..+..++.|+.|+++.|++. .++.... ..+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSN 187 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhh
Confidence 334466777777777776 3344444453 7777777777766 33345667777777777777776 4444332 4667
Q ss_pred ceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccC
Q 045571 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRE 179 (260)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (260)
|+.|+++++.+. ..+..+.....|+.+.+++|... ..+..+....++..+.+..|.+. ..+..+..++.++.|++.+
T Consensus 188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence 777777777775 44433334445777777777433 33345555666666666666654 3355556666677777777
Q ss_pred CcCcCCCcccccCcCCCcEEEcccCCCCCC
Q 045571 180 SNLQGGIPQELGNLAKLEMLQLFQNNLTGE 209 (260)
Q Consensus 180 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 209 (260)
|.+..... +....+++.++++++.+...
T Consensus 265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 265 NQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccccc--ccccCccCEEeccCcccccc
Confidence 77764322 56667777777777766543
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.14 E-value=6.7e-11 Score=70.35 Aligned_cols=61 Identities=31% Similarity=0.498 Sum_probs=49.9
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCccc
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQL 61 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 61 (260)
|+|++|++++|.++...+..|..+++|++|++++|.+....+.+|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 6788888888888877777888888888888888888877777888888888888888753
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=5.6e-11 Score=105.62 Aligned_cols=106 Identities=24% Similarity=0.280 Sum_probs=85.1
Q ss_pred cccEEEecCCc--cCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEe
Q 045571 2 RVTVLNISRLN--LTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLD 79 (260)
Q Consensus 2 ~L~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 79 (260)
+|+.|-++++. +.....+.|..+|.|++|++++|.-....|..++.+-+||+|+++++.+. ..|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 46777777775 55556667888999999999988766688999999999999999999887 7888899999999999
Q ss_pred ccCCCCCCccchhhhcCCCcceEEecCCCc
Q 045571 80 FSQNTLSGEIPANICSNLPFLEYISLSKNM 109 (260)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 109 (260)
+..+.....+ ..+...+++|++|.+....
T Consensus 625 l~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccc-cchhhhcccccEEEeeccc
Confidence 9888765344 4455568999999887654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=1.8e-10 Score=82.95 Aligned_cols=124 Identities=22% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCcceEEecCCCcccCCCCcccc-CCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEE
Q 045571 97 LPFLEYISLSKNMFHGGIPSALS-KCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELM 175 (260)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 175 (260)
..+++.|++.++.+... +.++ .+.+++.|++++|.+... +.+..++.|++|++++|.+..........+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34456666666655421 1232 345566666666665522 234445556666666665552211111234555566
Q ss_pred EccCCcCcCCC-cccccCcCCCcEEEcccCCCCCC---cchhccCCCcccEEE
Q 045571 176 SLRESNLQGGI-PQELGNLAKLEMLQLFQNNLTGE---IPREFSNLAKLEMMS 224 (260)
Q Consensus 176 ~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~ 224 (260)
++++|++.+.. -..+..+++|+.|++.+|++... -...+..+|+|+.||
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66655554311 13344555555555555555422 112344555555553
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.9e-11 Score=92.96 Aligned_cols=133 Identities=25% Similarity=0.267 Sum_probs=102.5
Q ss_pred CCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEE
Q 045571 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELM 175 (260)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 175 (260)
.++.|+.+++++|.++ ...+++.-.|.++.|++++|.+..+ ..+..+++|+.|++++|.++ ....+-..+-+.++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 4567899999999887 4455666778999999999988733 24777889999999999876 333344466788899
Q ss_pred EccCCcCcCCCcccccCcCCCcEEEcccCCCCCC-cchhccCCCcccEEEcCCCccccch
Q 045571 176 SLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGE-IPREFSNLAKLEMMSLSENNLQGVI 234 (260)
Q Consensus 176 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~ 234 (260)
.+++|.+.+. ..+..+-+|..|++++|++... ....++++|.|+.+.|.+|++...+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999988633 3455667888999999999753 3346889999999999999987655
No 36
>PLN03150 hypothetical protein; Provisional
Probab=99.08 E-value=6.7e-10 Score=96.43 Aligned_cols=106 Identities=27% Similarity=0.444 Sum_probs=60.2
Q ss_pred ccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecC
Q 045571 27 LQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLS 106 (260)
Q Consensus 27 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 106 (260)
++.|+|+++.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.++..+ ..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECc
Confidence 5556666666655556666666666666666666655555556666666666666666654444443 256666666666
Q ss_pred CCcccCCCCccccCC-CCCcEEEccCcc
Q 045571 107 KNMFHGGIPSALSKC-TYLQILSLSFND 133 (260)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 133 (260)
+|.+....|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 666555555444332 234455555554
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-11 Score=93.41 Aligned_cols=206 Identities=18% Similarity=0.200 Sum_probs=106.2
Q ss_pred ccEEEccCCcCcc-ccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCC-CCCccchhhhcCCCcceEEe
Q 045571 27 LQSLNLSFNRLSG-SIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNT-LSGEIPANICSNLPFLEYIS 104 (260)
Q Consensus 27 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~ 104 (260)
++.++|++..++. .....+..+.+|+.|.+.+..+.+.....+.+..+|+.++++.+. +.......++.++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc------- 259 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC------- 259 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh-------
Confidence 4555555554441 223334445555555555555444444444444555555554443 2212222233344
Q ss_pred cCCCcccCCCCccccCCCCCcEEEccCccCCCC-CcccccC-CCcccEEEcCCcccc---ccccccccCCccccEEEccC
Q 045571 105 LSKNMFHGGIPSALSKCTYLQILSLSFNDFSGA-IPKDIGN-LTKLMELYLGRNRLQ---GEIPREFGSLAELELMSLRE 179 (260)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~ 179 (260)
..|+.|+++.|..... ....+.. -++|..|+++++.-. .....--.++++|.+|++++
T Consensus 260 -----------------s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 260 -----------------SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred -----------------hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 4444444444433211 0001111 134556666654321 11122224567777777777
Q ss_pred CcC-cCCCcccccCcCCCcEEEcccCCCCCCcch---hccCCCcccEEEcCCCccccchhHhhhccccccccccccccee
Q 045571 180 SNL-QGGIPQELGNLAKLEMLQLFQNNLTGEIPR---EFSNLAKLEMMSLSENNLQGVIINFLQFYSSSACFCNLYSFAC 255 (260)
Q Consensus 180 ~~l-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (260)
|.. ....-.++..++.|++|.++.|-.- .|. .+...|+|.+|++.++--.+..--....++.++..|.+..+.+
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~~~ia 400 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHFNFIA 400 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccccceeeeeee
Confidence 643 2223345566777888877776432 232 3466788889988887666666666677888888888777655
Q ss_pred eee
Q 045571 256 SLI 258 (260)
Q Consensus 256 ~~~ 258 (260)
-++
T Consensus 401 rpv 403 (419)
T KOG2120|consen 401 RPV 403 (419)
T ss_pred ccc
Confidence 443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=4.7e-10 Score=66.66 Aligned_cols=61 Identities=43% Similarity=0.586 Sum_probs=45.3
Q ss_pred ccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCcc
Q 045571 170 AELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNL 230 (260)
Q Consensus 170 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 230 (260)
++|++|++.+|.+....+..|.++++|++|++++|.++...+..|.++++|+.|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777766566777777888888888777766667777788888888877764
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.94 E-value=2.4e-09 Score=92.97 Aligned_cols=93 Identities=31% Similarity=0.547 Sum_probs=55.4
Q ss_pred ccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCC
Q 045571 148 LMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSE 227 (260)
Q Consensus 148 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 227 (260)
++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45556666655555555555566666666666666555555555666666666666666655565566666666666666
Q ss_pred CccccchhHhhhc
Q 045571 228 NNLQGVIINFLQF 240 (260)
Q Consensus 228 n~~~~~~~~~~~~ 240 (260)
|.+.+.+|..+..
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 6666555555443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=3.7e-10 Score=86.06 Aligned_cols=129 Identities=28% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEE
Q 045571 24 LSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYI 103 (260)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 103 (260)
+..|+++++++|.|+ ....++.-.|.++.|+++.|.+... ..+..+++|.+|++++|.+. .+..-- ..+.++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeee
Confidence 344555555555554 2333334445555555555554422 12444555555555555444 111111 134455555
Q ss_pred ecCCCcccCCCCccccCCCCCcEEEccCccCCC-CCcccccCCCcccEEEcCCcccc
Q 045571 104 SLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG-AIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
.+.+|.+. ..+.+..+-+|..|++.+|++.. .....++++|.|+.+.+.+|.+.
T Consensus 358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55554442 22233444445555555555432 11123444455555555555443
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=6.3e-10 Score=84.60 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=17.5
Q ss_pred ccccEEEccCCcCcCC-CcccccCcCCCcEEEcccCCCC
Q 045571 170 AELELMSLRESNLQGG-IPQELGNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 170 ~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~l~ 207 (260)
+.+..|+++.+++... ..+.+.+++.|..|.++.+++.
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 3344445555544321 1233445555555555555554
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=5.8e-09 Score=79.49 Aligned_cols=208 Identities=18% Similarity=0.123 Sum_probs=131.2
Q ss_pred ccEEEccCCcCccccc-hhh-hcCCCCcEEEccCcccCC--CCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceE
Q 045571 27 LQSLNLSFNRLSGSIP-SAI-FTMYTLKYVSFRENQLSG--AFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 27 L~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 102 (260)
+..+.+.++.+..... ..| ..+..++.+++.+|.++. .....+.++|+|+.|+++.|++...+.. ......+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEE
Confidence 3355556665542221 122 356788888888888763 2334556788889999988888733322 2125677888
Q ss_pred EecCCCcccCC-CCccccCCCCCcEEEccCccCCC--CCcccccCC-CcccEEEcCCcccc--ccccccccCCccccEEE
Q 045571 103 ISLSKNMFHGG-IPSALSKCTYLQILSLSFNDFSG--AIPKDIGNL-TKLMELYLGRNRLQ--GEIPREFGSLAELELMS 176 (260)
Q Consensus 103 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~ 176 (260)
+-+.+..+... ....+..+|.++.+.++.|.... ........+ +.+.++...+|... ......-+.++++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 88888776532 22345667788888888884331 111111112 24566666666433 11222334567888899
Q ss_pred ccCCcCcCC-CcccccCcCCCcEEEcccCCCCCC-cchhccCCCcccEEEcCCCccccchh
Q 045571 177 LRESNLQGG-IPQELGNLAKLEMLQLFQNNLTGE-IPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 177 l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
++.|.+... ....+...+.+..|+++.+.+... -...+.+.+.|..|.+.++++.+...
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 999977643 234566778888999999998742 23457889999999999999886553
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=1.7e-08 Score=90.07 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=70.6
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
|.|++|++++|.--+.+|..++.+-+||+|++++..+. ..|..+.+++.|.+|++..+......+.....+++|++|.+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 57899999987655689999999999999999999998 88999999999999999887644344566667899999998
Q ss_pred cCCC
Q 045571 81 SQNT 84 (260)
Q Consensus 81 ~~~~ 84 (260)
....
T Consensus 650 ~~s~ 653 (889)
T KOG4658|consen 650 PRSA 653 (889)
T ss_pred eccc
Confidence 6654
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.3e-10 Score=86.14 Aligned_cols=179 Identities=21% Similarity=0.118 Sum_probs=109.0
Q ss_pred cccEEEecCCccCCC-ccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCC--chhhccCCCccEE
Q 045571 2 RVTVLNISRLNLTGT-IPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAF--PSFIFNKSSLQHL 78 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L 78 (260)
.|+++++++..|+-. .-.-+..+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.--... .-.+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 478889998888622 3344678899999999999999888888888999999999988632121 1245688999999
Q ss_pred eccCCCCCCccchhhhcC-CCcceEEecCCCccc--CCCCc-cccCCCCCcEEEccCccCC-CCCcccccCCCcccEEEc
Q 045571 79 DFSQNTLSGEIPANICSN-LPFLEYISLSKNMFH--GGIPS-ALSKCTYLQILSLSFNDFS-GAIPKDIGNLTKLMELYL 153 (260)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l 153 (260)
++++|.........+... -+.|+.|+++++.-. ..... -...++++..|++++|... ...-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999998753332222212 245777777765421 01111 1134566666666666432 111123344556666666
Q ss_pred CCcccc-ccccccccCCccccEEEccCC
Q 045571 154 GRNRLQ-GEIPREFGSLAELELMSLRES 180 (260)
Q Consensus 154 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 180 (260)
++|... -.....+...+.|.+|+..++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 666421 111123334455666665554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=3.4e-09 Score=88.00 Aligned_cols=205 Identities=24% Similarity=0.276 Sum_probs=96.2
Q ss_pred ccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcc
Q 045571 21 LGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFL 100 (260)
Q Consensus 21 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 100 (260)
+..+.++..+++.+|.+.+. ...+..+++|++|++++|.+.... .+..++.|+.|++.+|.+. .+... ..+++|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~~--~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISGL--ESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccCC--ccchhh
Confidence 44556666666666666522 222455666666666666655332 2344455666666666654 22221 135556
Q ss_pred eEEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCCc--------------------ccccCCCc--ccEEEcCCcc
Q 045571 101 EYISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAIP--------------------KDIGNLTK--LMELYLGRNR 157 (260)
Q Consensus 101 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~--L~~L~l~~~~ 157 (260)
+.++++.+.+...-. . ...+.+++.+.+.+|.+..... ..+..... |+.+++++|+
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR 243 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc
Confidence 666666555542221 1 2444555555555554431100 00111111 4555555555
Q ss_pred ccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC---Ccch-hccCCCcccEEEcCCCccccc
Q 045571 158 LQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG---EIPR-EFSNLAKLEMMSLSENNLQGV 233 (260)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~-~~~~~~~L~~L~l~~n~~~~~ 233 (260)
+. ..+..+..+..+..+++..+.+... ..+...+.+..+....+.+.. .... .....+.+..+.+.+++....
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 54 2223334444555555555554321 112223334444444444331 1111 134556677777777776655
Q ss_pred hh
Q 045571 234 II 235 (260)
Q Consensus 234 ~~ 235 (260)
.+
T Consensus 321 ~~ 322 (414)
T KOG0531|consen 321 SS 322 (414)
T ss_pred cc
Confidence 43
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=1.5e-09 Score=90.08 Aligned_cols=129 Identities=27% Similarity=0.382 Sum_probs=90.3
Q ss_pred CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceE
Q 045571 23 NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 102 (260)
.+..+..+.+..+.+.+ ....+..+.++..|++.+|.+.... ..+..+++|++|+++.|.+. .+.... .++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-cccchh--hccchhh
Confidence 45566666777777763 3344677888999999988887432 22667888999999999887 433322 4666889
Q ss_pred EecCCCcccCCCCccccCCCCCcEEEccCccCCCCCc-ccccCCCcccEEEcCCcccc
Q 045571 103 ISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP-KDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 159 (260)
|++.+|.+... ..+..++.++.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 99998888522 334557888888999988874433 1 356677888888888765
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=1.2e-08 Score=76.92 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=130.8
Q ss_pred ccEEEecCCccCCC----ccccccCCCCccEEEccCCcCc---cccc-------hhhhcCCCCcEEEccCcccCCCCch-
Q 045571 3 VTVLNISRLNLTGT----IPSQLGNLSSLQSLNLSFNRLS---GSIP-------SAIFTMYTLKYVSFRENQLSGAFPS- 67 (260)
Q Consensus 3 L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~-------~~l~~l~~L~~L~l~~~~l~~~~~~- 67 (260)
++.+++++|.|... ....+..-.+|++.+++.-... +..+ +++-.||+|+.+++++|-+....+.
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 45677777777533 3334455566777666654221 1222 3344677888888887776544443
Q ss_pred ---hhccCCCccEEeccCCCCCCccchhhh------------cCCCcceEEecCCCcccCCCC----ccccCCCCCcEEE
Q 045571 68 ---FIFNKSSLQHLDFSQNTLSGEIPANIC------------SNLPFLEYISLSKNMFHGGIP----SALSKCTYLQILS 128 (260)
Q Consensus 68 ---~~~~l~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ 128 (260)
.+.+-..|.+|.+.+|.+.......+. ++-|.|+.....+|.+..... ..+.....|+.+.
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vk 191 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVK 191 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEE
Confidence 334556777888877776532222111 244667777777776642211 1223335677777
Q ss_pred ccCccCCCC-----CcccccCCCcccEEEcCCccccc----cccccccCCccccEEEccCCcCcCCCcccc------cCc
Q 045571 129 LSFNDFSGA-----IPKDIGNLTKLMELYLGRNRLQG----EIPREFGSLAELELMSLRESNLQGGIPQEL------GNL 193 (260)
Q Consensus 129 l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~------~~~ 193 (260)
+..|.|.-. .-..+.++++|+.|++.+|.++- .+..++..++.|+.|.+.+|.+......++ ...
T Consensus 192 i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~ 271 (388)
T COG5238 192 IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFV 271 (388)
T ss_pred eeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcC
Confidence 777766421 11234566788888888887652 233455567778888888887654322221 123
Q ss_pred CCCcEEEcccCCCCCC------cchh-ccCCCcccEEEcCCCcccc
Q 045571 194 AKLEMLQLFQNNLTGE------IPRE-FSNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 194 ~~L~~L~l~~n~l~~~------~~~~-~~~~~~L~~L~l~~n~~~~ 232 (260)
++|+.|....|..... .+.. -..+|-|..+.+.+|.+..
T Consensus 272 p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 272 PNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred CCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 6677777776655431 1111 1346777777777777653
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=6e-09 Score=88.29 Aligned_cols=106 Identities=31% Similarity=0.296 Sum_probs=50.8
Q ss_pred CCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcc-cccCCCcccEEEcCCccccccccccccCCccccE
Q 045571 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPK-DIGNLTKLMELYLGRNRLQGEIPREFGSLAELEL 174 (260)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 174 (260)
-++.++.|++++|++.... .+..++.|+.||+++|.+. ..|. .-.++ .|..|.+.+|.++. ...+..+++|+.
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh--hhhHHhhhhhhc
Confidence 3455666666666654222 4555666666666666555 2222 11122 25566666655431 122334555566
Q ss_pred EEccCCcCcCCC-cccccCcCCCcEEEcccCCCC
Q 045571 175 MSLRESNLQGGI-PQELGNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 175 L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~ 207 (260)
|++++|-+.+.. -..+..+..|..|.+.||.+.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666665554311 111223344555555555553
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=3.7e-07 Score=68.99 Aligned_cols=213 Identities=18% Similarity=0.188 Sum_probs=139.3
Q ss_pred cccCCCCccEEEccCCcCccccchh----hhcCCCCcEEEccCcccC---CCCc-------hhhccCCCccEEeccCCCC
Q 045571 20 QLGNLSSLQSLNLSFNRLSGSIPSA----IFTMYTLKYVSFRENQLS---GAFP-------SFIFNKSSLQHLDFSQNTL 85 (260)
Q Consensus 20 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~l~---~~~~-------~~~~~l~~L~~L~l~~~~~ 85 (260)
.+..+..++++++++|.+...-... +++..+|+..++++--.. ...+ .++-++++|+..+++.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3456789999999999997544433 456678888888754221 1122 3345679999999999987
Q ss_pred CCccchh---hhcCCCcceEEecCCCcccCCCCccc-------------cCCCCCcEEEccCccCCCCCc----ccccCC
Q 045571 86 SGEIPAN---ICSNLPFLEYISLSKNMFHGGIPSAL-------------SKCTYLQILSLSFNDFSGAIP----KDIGNL 145 (260)
Q Consensus 86 ~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 145 (260)
....+.. +.++...|++|.+.+|.+.......+ ..-|.|+++.+..|++..... ..+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 6544443 34566789999999988753322222 234678888888887752111 123333
Q ss_pred CcccEEEcCCcccccc-----ccccccCCccccEEEccCCcCcC----CCcccccCcCCCcEEEcccCCCCCCcchhc--
Q 045571 146 TKLMELYLGRNRLQGE-----IPREFGSLAELELMSLRESNLQG----GIPQELGNLAKLEMLQLFQNNLTGEIPREF-- 214 (260)
Q Consensus 146 ~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-- 214 (260)
..|+.+.+..|+|... ....+.++.+|+.|++.+|.++. .+..++..++.|+.|.+.+|.+.....+.+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 4788888888887622 11234467789999999887653 234455566778888888888876444322
Q ss_pred ----cCCCcccEEEcCCCcccc
Q 045571 215 ----SNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 215 ----~~~~~L~~L~l~~n~~~~ 232 (260)
...|+|..|..++|.+.+
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HhhhhcCCCccccccchhhhcC
Confidence 235788888888886543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=1.2e-08 Score=86.43 Aligned_cols=159 Identities=25% Similarity=0.237 Sum_probs=85.4
Q ss_pred chhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcc--cCCCCcc---cc---CCCCCcEEEccCccCCCC
Q 045571 66 PSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMF--HGGIPSA---LS---KCTYLQILSLSFNDFSGA 137 (260)
Q Consensus 66 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~---~~---~~~~L~~L~l~~~~~~~~ 137 (260)
|-.+..+.+|++|.+.++.+.. ...+..--.+|++|...+.-. ...+... +. ....|.+.+.+.|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4455667788888888887752 222211112344443322110 0000000 00 0123555666666655 4
Q ss_pred CcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCC
Q 045571 138 IPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL 217 (260)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 217 (260)
...++.-++.++.|+++.|.+.+.. .+..+++|++|+++.|.++....-...+| +|+.|.+++|-+++. ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhh
Confidence 4456666677777777777765222 56667777777777777763222222233 377777777777632 235667
Q ss_pred CcccEEEcCCCcccc
Q 045571 218 AKLEMMSLSENNLQG 232 (260)
Q Consensus 218 ~~L~~L~l~~n~~~~ 232 (260)
.+|+-||+++|-+.+
T Consensus 254 ksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhhccchhHhhhhc
Confidence 777777777766543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=2e-06 Score=46.87 Aligned_cols=39 Identities=41% Similarity=0.670 Sum_probs=26.8
Q ss_pred CCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccc
Q 045571 194 AKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGV 233 (260)
Q Consensus 194 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 233 (260)
++|++|++++|+++ .+|..++++++|+.|++++|+++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 46777788888777 4555677788888888888877743
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=2.4e-06 Score=46.60 Aligned_cols=37 Identities=38% Similarity=0.606 Sum_probs=22.0
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCc
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLS 38 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 38 (260)
++|++|++++|+|+ .++..++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 45666666666666 34445666666666666666665
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=3.5e-07 Score=79.86 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=60.2
Q ss_pred CCccEEeccCCCCC-CccchhhhcCCCcceEEecCCCcccC-CCCccccCCCCCcEEEccCccCCCCCcccccCCCcccE
Q 045571 73 SSLQHLDFSQNTLS-GEIPANICSNLPFLEYISLSKNMFHG-GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLME 150 (260)
Q Consensus 73 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 150 (260)
.+|++|++++.... ..-+..+...+|.|+.|.+.+-.+.. .+.....++++|..||+++++++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 34555555443221 12222333345555555555443321 1112223455555555555555522 34445555555
Q ss_pred EEcCCccccc-cccccccCCccccEEEccCCcCcCC------CcccccCcCCCcEEEcccCCCCC
Q 045571 151 LYLGRNRLQG-EIPREFGSLAELELMSLRESNLQGG------IPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 151 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
|.+.+-.+.. ..-..+..+++|+.||++....... .-+.-..+|+|+.||++++.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 5554443331 2222334455566666655443221 01122335666666666665553
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.15 E-value=8.8e-07 Score=77.44 Aligned_cols=153 Identities=22% Similarity=0.272 Sum_probs=103.4
Q ss_pred cCCCCcEEEccCccc-CCCCchhh-ccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCC
Q 045571 47 TMYTLKYVSFRENQL-SGAFPSFI-FNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYL 124 (260)
Q Consensus 47 ~l~~L~~L~l~~~~l-~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 124 (260)
.-.+|++|+|++... ....+..+ ..+|.|++|.+.+-.+...-...++.++|+|..|+++++.++.. ..++.+++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 346799999988543 22233333 36799999999887765444566778899999999999998633 678889999
Q ss_pred cEEEccCccCCC-CCcccccCCCcccEEEcCCccccc------cccccccCCccccEEEccCCcCcCCCc-ccccCcCCC
Q 045571 125 QILSLSFNDFSG-AIPKDIGNLTKLMELYLGRNRLQG------EIPREFGSLAELELMSLRESNLQGGIP-QELGNLAKL 196 (260)
Q Consensus 125 ~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L 196 (260)
+.|.+.+-.+.. ..-..+..+++|+.||++...... ........+|+|+.||.+++.+..... .....-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 999888766652 112356678999999999864331 112233357899999999888765322 223344555
Q ss_pred cEEEc
Q 045571 197 EMLQL 201 (260)
Q Consensus 197 ~~L~l 201 (260)
+.+..
T Consensus 278 ~~i~~ 282 (699)
T KOG3665|consen 278 QQIAA 282 (699)
T ss_pred hhhhh
Confidence 55543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=4.4e-07 Score=61.55 Aligned_cols=86 Identities=20% Similarity=0.199 Sum_probs=46.6
Q ss_pred CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceE
Q 045571 23 NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 102 (260)
....|+..++++|.+.+..+......+.++.+++.+|.+. ..|..+..++.|+.+++..|++. ..+.-++. +.++..
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHH
Confidence 3445555566666665333333334456666666666665 34444666666666666666665 44444442 555555
Q ss_pred EecCCCccc
Q 045571 103 ISLSKNMFH 111 (260)
Q Consensus 103 L~l~~~~~~ 111 (260)
|+..++...
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 555555443
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.10 E-value=1.5e-05 Score=55.00 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=5.3
Q ss_pred cccCCCCCcEEEccC
Q 045571 117 ALSKCTYLQILSLSF 131 (260)
Q Consensus 117 ~~~~~~~L~~L~l~~ 131 (260)
.+..+++++.+.+.+
T Consensus 30 ~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT-SEEEESS
T ss_pred hcccccccccccccc
Confidence 334444444444433
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=2.2e-07 Score=62.94 Aligned_cols=82 Identities=29% Similarity=0.454 Sum_probs=36.0
Q ss_pred CCcEEEccCccCCCCCccccc-CCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEc
Q 045571 123 YLQILSLSFNDFSGAIPKDIG-NLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQL 201 (260)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 201 (260)
.|..+++++|.+. ..|+.|. ..+.++.|+++.|.+. ..|..+..++.|+.+++..|.+. ..|..+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444455555444 2222222 2334444555555444 44444444445555555555444 22333333444444444
Q ss_pred ccCCCC
Q 045571 202 FQNNLT 207 (260)
Q Consensus 202 ~~n~l~ 207 (260)
.+|...
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 444444
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.06 E-value=2e-05 Score=54.30 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=71.1
Q ss_pred ccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCC
Q 045571 116 SALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAK 195 (260)
Q Consensus 116 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 195 (260)
.++..+.+++.+.+.. .+..+....|.++++++.+.+..+ +......++..+++++.+.+.. .+.......|..++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566777888888774 344345567888888999999875 5545566788888899999976 443355667888999
Q ss_pred CcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 196 LEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 196 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
++.+.+..+ +.......+.++ +++.+.+.. .+..+...++.++.+|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 999999776 655667778887 999999886 66767778888776653
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=2.6e-07 Score=73.65 Aligned_cols=243 Identities=16% Similarity=0.111 Sum_probs=130.8
Q ss_pred ccEEEecCCccCCC--ccccccCCCCccEEEccCCc-Cccccchhh-hcCCCCcEEEccCcc-cCCCCch-hhccCCCcc
Q 045571 3 VTVLNISRLNLTGT--IPSQLGNLSSLQSLNLSFNR-LSGSIPSAI-FTMYTLKYVSFRENQ-LSGAFPS-FIFNKSSLQ 76 (260)
Q Consensus 3 L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~-l~~~~~~-~~~~l~~L~ 76 (260)
|+.|.+.++.=.+. ....-..+|+++.|++.++. +++..-..+ ..+++++++++..|. ++...-. ....+++|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 55666666643222 22233467888888888875 333222233 367788888887743 3322112 223467788
Q ss_pred EEeccCCC-CCCccchhhhcCCCcceEEecCCCccc---------------------------CCCC-ccccCCCCCcEE
Q 045571 77 HLDFSQNT-LSGEIPANICSNLPFLEYISLSKNMFH---------------------------GGIP-SALSKCTYLQIL 127 (260)
Q Consensus 77 ~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------------~~~~-~~~~~~~~L~~L 127 (260)
+++++++. +.+.-...+..++..++.+...+|.-. +... ..-..+..++.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 88888775 332222223334444444444432210 0000 001123455566
Q ss_pred EccCccCCCCC--cccccCCCcccEEEcCCcc-ccccccccc-cCCccccEEEccCCcCcC--CCcccccCcCCCcEEEc
Q 045571 128 SLSFNDFSGAI--PKDIGNLTKLMELYLGRNR-LQGEIPREF-GSLAELELMSLRESNLQG--GIPQELGNLAKLEMLQL 201 (260)
Q Consensus 128 ~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l 201 (260)
+.+++.-.+.. -.-...+++|+.+-+.+|. ++..-...+ ++++.|+.+++.++.... .+...-.+|+.|+.+.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 55554321111 1122355677778777774 221111122 356678888887775532 23344467888999988
Q ss_pred ccCCCCCCc-----chhccCCCcccEEEcCCCc-cccchhHhhhcccccc
Q 045571 202 FQNNLTGEI-----PREFSNLAKLEMMSLSENN-LQGVIINFLQFYSSSA 245 (260)
Q Consensus 202 ~~n~l~~~~-----~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~l~ 245 (260)
+.|...... ...-.+...++.+++++++ +++...+.+..++.|+
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 887654332 1222345678899999988 6666678888888776
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=2e-05 Score=57.19 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=50.2
Q ss_pred CcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCC-cccccCcCCCcEEEcc
Q 045571 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGI-PQELGNLAKLEMLQLF 202 (260)
Q Consensus 124 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~ 202 (260)
...+++.+|.+.. ...+..++.|.+|.+.+|.|....|..-.-+++|+.|.+.+|.+.... -..+..|++|+.|.+-
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445555554431 123444455555555555555444443334455555555555554311 1233455666666666
Q ss_pred cCCCCCC---cchhccCCCcccEEEcCC
Q 045571 203 QNNLTGE---IPREFSNLAKLEMMSLSE 227 (260)
Q Consensus 203 ~n~l~~~---~~~~~~~~~~L~~L~l~~ 227 (260)
+|.+... -...+..+|+|+.||.++
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 6655421 122345566666666554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=0.00027 Score=57.81 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=69.6
Q ss_pred hcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCc
Q 045571 46 FTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQ 125 (260)
Q Consensus 46 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 125 (260)
..++++++|++++|.+.. .|. -..+|++|.+++|.....++..+ .++|+.|.+++|......| .+|+
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------cccc
Confidence 346777777777776652 331 13357777777654432444432 2467777777663211222 3466
Q ss_pred EEEccCccCCCCCcccccCC-CcccEEEcCCcccc--ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcc
Q 045571 126 ILSLSFNDFSGAIPKDIGNL-TKLMELYLGRNRLQ--GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLF 202 (260)
Q Consensus 126 ~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 202 (260)
.|++..+... . +..+ ++|+.|.+.++... ...+. .-+++|++|++.+|... ..|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCc-c----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 6666554432 1 1222 25666666432211 01111 11256777777776644 2333332 567777776
Q ss_pred cC
Q 045571 203 QN 204 (260)
Q Consensus 203 ~n 204 (260)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 55
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=3.4e-05 Score=56.03 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=60.9
Q ss_pred CccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEec
Q 045571 26 SLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISL 105 (260)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 105 (260)
+.-.+++++|.+.. -..|..++.|.+|.+.+|.++.+.+.--..+++|..|.+.+|.+..-....-...+|+|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34456666666541 2234556667777777777665555544455667777777776652222222235677777777
Q ss_pred CCCcccCCC---CccccCCCCCcEEEccCcc
Q 045571 106 SKNMFHGGI---PSALSKCTYLQILSLSFND 133 (260)
Q Consensus 106 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 133 (260)
-+|..+..- ...+..+++++.||.....
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 776654211 1234566777777776543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=0.00038 Score=56.92 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=7.8
Q ss_pred CCCccEEEccCCcCc
Q 045571 24 LSSLQSLNLSFNRLS 38 (260)
Q Consensus 24 ~~~L~~L~l~~~~~~ 38 (260)
+++++.|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 455555555555444
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=2.1e-05 Score=66.81 Aligned_cols=112 Identities=21% Similarity=0.133 Sum_probs=61.3
Q ss_pred CCCCccEEEccCCc-Cccc-cchhhhcCCCCcEEEccCc-ccCCCC----chhhccCCCccEEeccCCC-CCCccchhhh
Q 045571 23 NLSSLQSLNLSFNR-LSGS-IPSAIFTMYTLKYVSFREN-QLSGAF----PSFIFNKSSLQHLDFSQNT-LSGEIPANIC 94 (260)
Q Consensus 23 ~~~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~ 94 (260)
..+.++.+.+.++. +... .......+++|+.|+++++ ...... ......+.+|+.++++.+. +.+.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35777777777664 3321 2234456777777777662 111111 1222344667777777776 4444444444
Q ss_pred cCCCcceEEecCCCc-ccCCCC-ccccCCCCCcEEEccCccC
Q 045571 95 SNLPFLEYISLSKNM-FHGGIP-SALSKCTYLQILSLSFNDF 134 (260)
Q Consensus 95 ~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~ 134 (260)
..+++|+.|.+.++. +++... .....++.|+.|++.++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 456777777766555 332222 2224566677777776654
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.31 E-value=2.1e-05 Score=63.13 Aligned_cols=245 Identities=19% Similarity=0.117 Sum_probs=132.6
Q ss_pred CcccEEEecCCc-cCCCcccccc-CCCCccEEEccCC-cCccccchhh-hcCCCCcEEEccCccc-CCCCchhh-ccCCC
Q 045571 1 HRVTVLNISRLN-LTGTIPSQLG-NLSSLQSLNLSFN-RLSGSIPSAI-FTMYTLKYVSFRENQL-SGAFPSFI-FNKSS 74 (260)
Q Consensus 1 ~~L~~l~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~~l-~~~~~~~~-~~l~~ 74 (260)
|+++.|.+.++. +++..-..++ .+++++.+++..| .++...-..+ ..+++|++++++.|.. .+.....+ ..+..
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence 455666665553 2322222332 5677777777774 3443333322 3567777777776642 21111111 11111
Q ss_pred --------------------------ccEEeccCCC-CCCccchhhhcCCCcceEEecCCCcccCC-CC-ccccCCCCCc
Q 045571 75 --------------------------LQHLDFSQNT-LSGEIPANICSNLPFLEYISLSKNMFHGG-IP-SALSKCTYLQ 125 (260)
Q Consensus 75 --------------------------L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~~L~ 125 (260)
+-.+++..|. +++.-...+...+.+|+.+..+++..... .. .--.+..+|+
T Consensus 244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 2233332332 22221222233456677777776543211 11 1224568899
Q ss_pred EEEccCccC-CCCC-cccccCCCcccEEEcCCcccccc--ccccccCCccccEEEccCCcCcCCC-----cccccCcCCC
Q 045571 126 ILSLSFNDF-SGAI-PKDIGNLTKLMELYLGRNRLQGE--IPREFGSLAELELMSLRESNLQGGI-----PQELGNLAKL 196 (260)
Q Consensus 126 ~L~l~~~~~-~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~~~L 196 (260)
.+.+..|+- ++.- ..--.+++.|+.+++..+..... +...-..++.|+.+.+++|...... ...-.....+
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 999998863 2111 11123567899999998865422 2233346788999999977543211 2222345678
Q ss_pred cEEEcccCCCCC-CcchhccCCCcccEEEcCCCc--cccchhHhhhcccccc
Q 045571 197 EMLQLFQNNLTG-EIPREFSNLAKLEMMSLSENN--LQGVIINFLQFYSSSA 245 (260)
Q Consensus 197 ~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~l~ 245 (260)
..+.+++++... ..-..+..+++|+.+++-++. ..+.+-..-..++++.
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 889999988763 344456778999999988875 3444445556666654
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.15 E-value=5.1e-05 Score=64.51 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=15.4
Q ss_pred CCCccEEeccCCC-CCCccchhhhcCCCcceEEecCCC
Q 045571 72 KSSLQHLDFSQNT-LSGEIPANICSNLPFLEYISLSKN 108 (260)
Q Consensus 72 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 108 (260)
+++|++|.+..+. +.+.....+...++.|++|+++.+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3444444444443 232333333334444444444433
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00025 Score=53.64 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=63.8
Q ss_pred ccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCc--ccCCCCchhhccCCCccEEeccCCCCCCccchhhh
Q 045571 17 IPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFREN--QLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANIC 94 (260)
Q Consensus 17 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 94 (260)
+......+..++.+++.+..++. -..|-.+++|+.|.++.| .+...+.....++++|++++++.|++...-...-.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 33444455667777777776652 223446778888888887 44444444445668888888888877531111112
Q ss_pred cCCCcceEEecCCCcccCCCC---ccccCCCCCcEEEccC
Q 045571 95 SNLPFLEYISLSKNMFHGGIP---SALSKCTYLQILSLSF 131 (260)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 131 (260)
+.+.+|..|++..|..+.... ..+.-+++|++++-..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 355667777777766553111 1223345666655433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=3.6e-05 Score=58.74 Aligned_cols=98 Identities=26% Similarity=0.287 Sum_probs=66.8
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCc-hhhccCCCccEEecc
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFP-SFIFNKSSLQHLDFS 81 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~ 81 (260)
++.|+..+|++.++ .....|+.|++|.|+-|.|+.. ..|..|++|++|++..|.+..... ..+.++++|+.|.+.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45677788887643 3356788899999999888743 346788889999998888764322 456678888888887
Q ss_pred CCCCCCccch----hhhcCCCcceEEe
Q 045571 82 QNTLSGEIPA----NICSNLPFLEYIS 104 (260)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~~L~~L~ 104 (260)
.|+=.+.... .....+|+|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 7754322222 2334567777775
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00051 Score=51.97 Aligned_cols=109 Identities=20% Similarity=0.134 Sum_probs=65.7
Q ss_pred hhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC--CCCCccchhhhcCCCcceEEecCCCcccC-CCCccccC
Q 045571 44 AIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN--TLSGEIPANICSNLPFLEYISLSKNMFHG-GIPSALSK 120 (260)
Q Consensus 44 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~ 120 (260)
-...+.+|+.+++.+..++.. ..+..+++|+.|.++.| ++...+.... ..+|+|+++++++|.+.. .....+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhh
Confidence 334566777777766655532 33556788888999888 4443333333 245889999999888863 12233445
Q ss_pred CCCCcEEEccCccCCCC---CcccccCCCcccEEEcCC
Q 045571 121 CTYLQILSLSFNDFSGA---IPKDIGNLTKLMELYLGR 155 (260)
Q Consensus 121 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~ 155 (260)
+.+|..|++.+|..++. -...+.-+++|..|+-.+
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 56778888888866531 112334456666665443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=5.1e-05 Score=57.94 Aligned_cols=102 Identities=23% Similarity=0.176 Sum_probs=77.9
Q ss_pred CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceE
Q 045571 23 NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 102 (260)
.+.+.++|+.-||.+.+. .....|+.|+.|.++-|+++... .+..+++|++|.+..|.|.+.-....++++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356788899999988743 23358999999999999988553 47789999999999999985445566789999999
Q ss_pred EecCCCcccCCCCc-----cccCCCCCcEEE
Q 045571 103 ISLSKNMFHGGIPS-----ALSKCTYLQILS 128 (260)
Q Consensus 103 L~l~~~~~~~~~~~-----~~~~~~~L~~L~ 128 (260)
|.+..|...+.... .+.-+++|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998877644332 334567777765
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0056 Score=27.66 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=7.4
Q ss_pred ccEEEcCCCccc
Q 045571 220 LEMMSLSENNLQ 231 (260)
Q Consensus 220 L~~L~l~~n~~~ 231 (260)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 556666666665
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0077 Score=27.20 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=7.4
Q ss_pred cccEEEecCCccC
Q 045571 2 RVTVLNISRLNLT 14 (260)
Q Consensus 2 ~L~~l~l~~~~~~ 14 (260)
+|++|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3555666666555
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.45 E-value=8.1e-05 Score=62.63 Aligned_cols=83 Identities=27% Similarity=0.199 Sum_probs=47.7
Q ss_pred ccEEEccCCcCccccc----hhhhcCCCCcEEEccCcccCCCCch----hhccC-CCccEEeccCCCCCCcc----chhh
Q 045571 27 LQSLNLSFNRLSGSIP----SAIFTMYTLKYVSFRENQLSGAFPS----FIFNK-SSLQHLDFSQNTLSGEI----PANI 93 (260)
Q Consensus 27 L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~----~~~~ 93 (260)
+..+.+.+|.+..... .++...++|+.|++++|.+.+.... .+... +.+++|.+..|.+...- ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777764333 3445677788888888877643222 22232 55677777777665322 2222
Q ss_pred hcCCCcceEEecCCCcc
Q 045571 94 CSNLPFLEYISLSKNMF 110 (260)
Q Consensus 94 ~~~~~~L~~L~l~~~~~ 110 (260)
. ....++.+++..|.+
T Consensus 169 ~-~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGL 184 (478)
T ss_pred h-cccchhHHHHHhccc
Confidence 2 245566666666655
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.47 E-value=0.028 Score=25.85 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=13.7
Q ss_pred CCcccEEEcCCCccccchhHhhh
Q 045571 217 LAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 217 ~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
+++|+.|+|++|.+++....+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35677778877777766665543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.0094 Score=43.67 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=51.5
Q ss_pred cccEEEcCCccccccccccccCCccccEEEccCCcCcCCC--cccccCcCCCcEEEcccCC-CCCCcchhccCCCcccEE
Q 045571 147 KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGI--PQELGNLAKLEMLQLFQNN-LTGEIPREFSNLAKLEMM 223 (260)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L 223 (260)
.++.++.+++.|..+-...+..++.++.|.+.+|.-.+.. ...-...++|+.|++++|. |++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4666777777666555566666777777777777543311 0111244778888888774 665555666777788777
Q ss_pred EcCCC
Q 045571 224 SLSEN 228 (260)
Q Consensus 224 ~l~~n 228 (260)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.078 Score=22.14 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=5.0
Q ss_pred cccEEEecCCccC
Q 045571 2 RVTVLNISRLNLT 14 (260)
Q Consensus 2 ~L~~l~l~~~~~~ 14 (260)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.92 E-value=0.1 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=12.1
Q ss_pred CcccEEEcCCCccccchhHhh
Q 045571 218 AKLEMMSLSENNLQGVIINFL 238 (260)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~~ 238 (260)
++|+.|+|++|.+..+.+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666665554444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.92 E-value=0.1 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=12.1
Q ss_pred CcccEEEcCCCccccchhHhh
Q 045571 218 AKLEMMSLSENNLQGVIINFL 238 (260)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~~ 238 (260)
++|+.|+|++|.+..+.+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666665554444
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=0.072 Score=39.21 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=57.6
Q ss_pred ccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCC-cchhc-cCCCcccEEEcCCCc-cccchhHhhhcccccc
Q 045571 170 AELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGE-IPREF-SNLAKLEMMSLSENN-LQGVIINFLQFYSSSA 245 (260)
Q Consensus 170 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~l~ 245 (260)
-.++.++.+++.+....-+-+.+++.++.|.+.+|+-... .-+.+ +-.++|+.|+|++|+ |++-....+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3578899999888755556677888999999988875532 11122 246899999999997 9988888888888776
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.50 E-value=0.018 Score=43.36 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=58.2
Q ss_pred ccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCC
Q 045571 19 SQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98 (260)
Q Consensus 19 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (260)
-.+..+...+.|+++.+++.. ....|.-+..+..++++.+.+. ..|..+.....+++++...|.+. ..|... ...+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~-~k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ-KKEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc-cccC
Confidence 345566778888888877652 3334555666777777776655 55666666666777777777665 555544 4677
Q ss_pred cceEEecCCCccc
Q 045571 99 FLEYISLSKNMFH 111 (260)
Q Consensus 99 ~L~~L~l~~~~~~ 111 (260)
+++.+++.++.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 7777777776643
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.00 E-value=0.013 Score=44.06 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=36.0
Q ss_pred CCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEE
Q 045571 120 KCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEML 199 (260)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 199 (260)
.+...+.|+++.++.. .....+..++.+..++++.|.+. ..|..+.....+..++...|... -.|..+...++++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3344455555555443 22233444444555555554443 33333333333333444333333 334444444445444
Q ss_pred EcccCCC
Q 045571 200 QLFQNNL 206 (260)
Q Consensus 200 ~l~~n~l 206 (260)
+..++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 4444443
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.86 E-value=0.89 Score=21.73 Aligned_cols=16 Identities=44% Similarity=0.601 Sum_probs=9.4
Q ss_pred CCccEEEccCCcCccc
Q 045571 25 SSLQSLNLSFNRLSGS 40 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~~ 40 (260)
++|++|+|++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4566666666666533
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.65 E-value=1.5 Score=20.35 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=8.7
Q ss_pred CcccEEEcCCCc-cccc
Q 045571 218 AKLEMMSLSENN-LQGV 233 (260)
Q Consensus 218 ~~L~~L~l~~n~-~~~~ 233 (260)
++|+.|+|++|+ +++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 455666666654 4433
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.14 E-value=1.8 Score=20.32 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=10.8
Q ss_pred CcccEEEcCCCccccc
Q 045571 218 AKLEMMSLSENNLQGV 233 (260)
Q Consensus 218 ~~L~~L~l~~n~~~~~ 233 (260)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777777633
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.50 E-value=1.8 Score=37.04 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=33.4
Q ss_pred CCccccEEEccCCcCcCC--CcccccCcCCCcEEEcccC--CCCCCcchhccC--CCcccEEEcCCCcccc
Q 045571 168 SLAELELMSLRESNLQGG--IPQELGNLAKLEMLQLFQN--NLTGEIPREFSN--LAKLEMMSLSENNLQG 232 (260)
Q Consensus 168 ~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~--~~~L~~L~l~~n~~~~ 232 (260)
..+.+..+++++|++... +...-...|+|++|++++| .+. ...++.+ ...|++|.+.||++.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 345566666777766431 1222234567777777777 332 1222222 3456777777777643
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.63 E-value=2.5 Score=36.27 Aligned_cols=80 Identities=26% Similarity=0.247 Sum_probs=48.4
Q ss_pred CCCCccEEEccCCcCccc--cchhhhcCCCCcEEEccCc--ccCCCCchhhc--cCCCccEEeccCCCCCCccch-----
Q 045571 23 NLSSLQSLNLSFNRLSGS--IPSAIFTMYTLKYVSFREN--QLSGAFPSFIF--NKSSLQHLDFSQNTLSGEIPA----- 91 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~--~l~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~----- 91 (260)
+.+.+..+++++|++... ...--...|+|..|+|++| .+.. ...+. +...|++|.+.+|++......
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 567788888888877521 1112235688999999888 3332 12222 345688889988888642221
Q ss_pred -hhhcCCCcceEEe
Q 045571 92 -NICSNLPFLEYIS 104 (260)
Q Consensus 92 -~~~~~~~~L~~L~ 104 (260)
.+....|+|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2333556666665
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.04 E-value=4.1 Score=19.15 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=6.5
Q ss_pred cccEEEecCCccC
Q 045571 2 RVTVLNISRLNLT 14 (260)
Q Consensus 2 ~L~~l~l~~~~~~ 14 (260)
+|++|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555544
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=59.79 E-value=0.12 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=17.2
Q ss_pred CCccEEEccCCcCcccc----chhhhcCCCCcEEEccCccc
Q 045571 25 SSLQSLNLSFNRLSGSI----PSAIFTMYTLKYVSFRENQL 61 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l 61 (260)
..++.|.+..|.++... ...+....+++.++++.|.+
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 34455555555554222 22333345555555555543
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.60 E-value=18 Score=37.75 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.2
Q ss_pred EccCCcCcCCCcccccCcCCCcEEEcccCCCC
Q 045571 176 SLRESNLQGGIPQELGNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 176 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 207 (260)
+|++|+|....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788888777778888889999999998876
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.72 E-value=56 Score=34.57 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=27.3
Q ss_pred EecCCccCCCccccccCCCCccEEEccCCcCc
Q 045571 7 NISRLNLTGTIPSQLGNLSSLQSLNLSFNRLS 38 (260)
Q Consensus 7 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 38 (260)
+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998777788889999999999998765
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.27 E-value=1.5e+02 Score=15.66 Aligned_cols=11 Identities=45% Similarity=0.419 Sum_probs=7.5
Q ss_pred CCccEEEccCC
Q 045571 25 SSLQSLNLSFN 35 (260)
Q Consensus 25 ~~L~~L~l~~~ 35 (260)
++++.|.+...
T Consensus 12 ~~l~~L~~g~~ 22 (44)
T PF05725_consen 12 SSLKSLIFGSS 22 (44)
T ss_pred CCCeEEEECCc
Confidence 56788888443
Done!