Query 045571
Match_columns 260
No_of_seqs 148 out of 2467
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 05:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyj_A Leucine-rich repeat-con 100.0 4.8E-32 1.6E-36 225.2 20.4 239 1-256 64-303 (440)
2 3zyi_A Leucine-rich repeat-con 100.0 6.3E-32 2.1E-36 225.2 20.4 237 1-254 75-312 (452)
3 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-32 8.5E-37 217.0 15.7 240 2-245 51-294 (313)
4 3rgz_A Protein brassinosteroid 100.0 3.8E-31 1.3E-35 233.6 22.4 243 2-245 395-707 (768)
5 2id5_A Lingo-1, leucine rich r 100.0 4.3E-31 1.5E-35 221.7 19.3 253 1-254 56-342 (477)
6 2z66_A Variable lymphocyte rec 100.0 3.9E-31 1.3E-35 209.7 17.5 230 1-232 28-262 (306)
7 3v47_A TOLL-like receptor 5B a 100.0 5.1E-31 1.7E-35 220.0 18.1 108 138-245 291-398 (455)
8 1ozn_A Reticulon 4 receptor; N 100.0 4.4E-30 1.5E-34 201.6 20.6 224 4-231 14-238 (285)
9 3rgz_A Protein brassinosteroid 100.0 2.4E-30 8.2E-35 228.4 21.2 236 1-237 418-723 (768)
10 3v47_A TOLL-like receptor 5B a 100.0 5.7E-30 1.9E-34 213.7 20.2 245 1-245 30-374 (455)
11 3t6q_A CD180 antigen; protein- 100.0 7.5E-30 2.6E-34 220.1 20.2 252 1-254 278-569 (606)
12 2id5_A Lingo-1, leucine rich r 100.0 7.1E-30 2.4E-34 214.3 18.5 244 1-245 32-299 (477)
13 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-30 7.1E-35 206.0 13.5 226 1-230 76-303 (313)
14 1xku_A Decorin; proteoglycan, 100.0 9.3E-29 3.2E-33 198.0 22.8 232 1-240 52-285 (330)
15 2z80_A TOLL-like receptor 2, v 100.0 1.6E-30 5.5E-35 210.1 12.5 232 1-233 52-316 (353)
16 4fcg_A Uncharacterized protein 100.0 2.7E-29 9.3E-34 200.7 18.3 224 2-230 82-313 (328)
17 3o6n_A APL1; leucine-rich repe 100.0 7.5E-29 2.6E-33 203.0 18.6 133 2-135 46-178 (390)
18 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-28 1.2E-32 194.8 21.8 228 1-237 54-283 (332)
19 3t6q_A CD180 antigen; protein- 100.0 3.3E-28 1.1E-32 209.8 22.7 242 2-244 255-526 (606)
20 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-28 2.1E-32 210.8 23.7 256 1-257 329-635 (680)
21 1ziw_A TOLL-like receptor 3; i 100.0 6.7E-28 2.3E-32 210.5 20.9 244 1-245 25-299 (680)
22 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-28 6.4E-33 192.3 15.3 238 1-240 32-270 (285)
23 4fcg_A Uncharacterized protein 100.0 5.6E-28 1.9E-32 193.1 17.8 218 23-246 79-305 (328)
24 3zyj_A Leucine-rich repeat-con 100.0 1.4E-27 4.8E-32 198.4 20.5 237 3-245 45-282 (440)
25 3oja_B Anopheles plasmodium-re 100.0 5.3E-28 1.8E-32 208.0 18.5 237 3-242 53-348 (597)
26 3o6n_A APL1; leucine-rich repe 100.0 1.3E-27 4.4E-32 195.6 19.7 240 1-245 69-345 (390)
27 3zyi_A Leucine-rich repeat-con 100.0 1.6E-27 5.4E-32 198.7 20.5 236 4-245 57-293 (452)
28 1xku_A Decorin; proteoglycan, 100.0 5.5E-27 1.9E-31 187.8 22.2 238 1-245 76-322 (330)
29 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.6E-32 189.9 17.8 246 4-254 10-270 (306)
30 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-28 1.1E-32 209.8 15.7 248 1-256 307-569 (606)
31 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-27 6.7E-32 205.8 20.1 95 162-256 486-591 (635)
32 2z62_A TOLL-like receptor 4, v 100.0 3.8E-27 1.3E-31 184.1 18.3 221 6-231 12-237 (276)
33 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-27 1.7E-31 188.1 19.4 232 2-245 34-267 (332)
34 3o53_A Protein LRIM1, AGAP0063 100.0 1.3E-27 4.4E-32 190.3 14.7 230 1-245 34-265 (317)
35 3oja_B Anopheles plasmodium-re 100.0 5.1E-27 1.8E-31 201.9 19.5 228 1-234 75-361 (597)
36 2o6q_A Variable lymphocyte rec 99.9 2.6E-26 8.9E-31 178.7 20.5 202 26-231 17-218 (270)
37 2z80_A TOLL-like receptor 2, v 99.9 2.7E-27 9.1E-32 191.3 15.4 238 4-245 34-304 (353)
38 3oja_A Leucine-rich immune mol 99.9 3.5E-27 1.2E-31 197.9 16.0 229 1-244 34-264 (487)
39 4eco_A Uncharacterized protein 99.9 1.2E-27 4E-32 207.1 13.4 228 2-231 207-501 (636)
40 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-27 2.6E-31 208.0 17.7 245 1-245 24-365 (844)
41 4eco_A Uncharacterized protein 99.9 7.5E-27 2.6E-31 202.1 16.9 240 1-245 249-539 (636)
42 4fmz_A Internalin; leucine ric 99.9 1.8E-25 6.2E-30 180.1 23.3 221 1-235 88-328 (347)
43 1p9a_G Platelet glycoprotein I 99.9 4.8E-26 1.6E-30 178.8 19.2 203 21-231 6-208 (290)
44 2z7x_B TOLL-like receptor 1, v 99.9 2E-26 6.9E-31 195.3 18.1 107 1-111 21-128 (520)
45 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-26 5.7E-31 205.9 18.0 122 122-245 266-387 (844)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.4E-26 1.2E-30 195.6 18.8 107 1-111 52-159 (562)
47 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-26 8E-31 194.9 17.4 155 96-253 322-489 (520)
48 3vq2_A TLR4, TOLL-like recepto 99.9 2.7E-26 9.1E-31 198.0 17.7 228 1-232 328-559 (606)
49 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-26 5.2E-31 197.3 15.2 154 1-154 26-180 (549)
50 4fmz_A Internalin; leucine ric 99.9 9.3E-25 3.2E-29 176.0 24.2 229 1-245 66-314 (347)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.7E-26 1.6E-30 194.7 17.5 155 96-253 351-518 (562)
52 2z63_A TOLL-like receptor 4, v 99.9 3.6E-26 1.2E-30 195.8 16.5 225 2-231 283-531 (570)
53 4ecn_A Leucine-rich repeat pro 99.9 1.6E-25 5.4E-30 198.0 20.2 236 1-244 491-778 (876)
54 2o6q_A Variable lymphocyte rec 99.9 8.6E-25 2.9E-29 170.1 21.7 203 2-208 17-219 (270)
55 4ecn_A Leucine-rich repeat pro 99.9 1.1E-25 3.7E-30 199.0 16.6 179 1-184 448-658 (876)
56 3rfs_A Internalin B, repeat mo 99.9 2.1E-25 7.3E-30 173.7 15.7 217 20-248 36-252 (272)
57 2z62_A TOLL-like receptor 4, v 99.9 3.1E-25 1.1E-29 173.2 16.6 207 1-209 28-239 (276)
58 2z63_A TOLL-like receptor 4, v 99.9 1E-25 3.5E-30 192.9 15.1 178 1-180 28-210 (570)
59 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-25 5.2E-30 191.1 15.4 118 1-118 50-168 (549)
60 1wwl_A Monocyte differentiatio 99.9 1.5E-26 5E-31 183.8 8.4 203 23-232 93-310 (312)
61 1o6v_A Internalin A; bacterial 99.9 9.2E-24 3.1E-28 176.6 22.8 219 2-235 69-326 (466)
62 1o6v_A Internalin A; bacterial 99.9 1.1E-23 3.8E-28 176.1 22.9 227 1-245 90-356 (466)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-25 6.6E-30 177.7 10.3 227 4-245 13-240 (317)
64 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-23 6.4E-28 173.9 22.3 219 1-245 42-260 (457)
65 3rfs_A Internalin B, repeat mo 99.9 5E-24 1.7E-28 166.0 17.1 208 1-220 41-248 (272)
66 1wwl_A Monocyte differentiatio 99.9 2.1E-24 7.3E-29 171.3 14.3 202 1-208 95-310 (312)
67 1p9a_G Platelet glycoprotein I 99.9 5.6E-23 1.9E-27 161.3 20.0 200 1-208 10-209 (290)
68 3oja_A Leucine-rich immune mol 99.9 4.2E-24 1.4E-28 179.3 13.7 208 23-245 32-240 (487)
69 3m19_A Variable lymphocyte rec 99.9 9.4E-23 3.2E-27 156.9 17.8 158 74-232 36-193 (251)
70 2xwt_C Thyrotropin receptor; s 99.9 3.8E-23 1.3E-27 158.0 14.7 198 25-229 31-237 (239)
71 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.2E-27 158.3 14.0 196 2-204 32-236 (239)
72 3bz5_A Internalin-J, INLJ; leu 99.9 4.4E-22 1.5E-26 165.7 21.4 186 1-210 64-249 (457)
73 2ca6_A RAN GTPase-activating p 99.9 1E-24 3.4E-29 178.3 4.5 235 1-235 32-320 (386)
74 3goz_A Leucine-rich repeat-con 99.9 6.8E-24 2.3E-28 171.8 9.2 234 2-235 23-301 (362)
75 2ast_B S-phase kinase-associat 99.9 1.4E-24 4.7E-29 174.2 5.0 201 3-204 72-282 (336)
76 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.3E-27 159.8 16.2 194 22-232 38-231 (308)
77 3m19_A Variable lymphocyte rec 99.9 6.7E-22 2.3E-26 152.2 18.9 177 3-183 16-192 (251)
78 4glp_A Monocyte differentiatio 99.9 5.1E-23 1.8E-27 163.2 12.1 224 2-232 65-308 (310)
79 1h6u_A Internalin H; cell adhe 99.9 7.5E-22 2.5E-26 156.3 18.3 191 1-208 41-231 (308)
80 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-21 7.9E-26 166.2 22.5 216 2-244 62-310 (622)
81 2ast_B S-phase kinase-associat 99.9 8.6E-24 2.9E-28 169.6 6.9 241 3-249 49-303 (336)
82 4glp_A Monocyte differentiatio 99.9 4.9E-23 1.7E-27 163.4 10.6 217 24-244 63-299 (310)
83 3goz_A Leucine-rich repeat-con 99.9 3.5E-23 1.2E-27 167.6 8.0 233 5-237 2-272 (362)
84 1z7x_W Ribonuclease inhibitor; 99.9 5.6E-24 1.9E-28 177.7 1.0 214 22-235 167-415 (461)
85 1z7x_W Ribonuclease inhibitor; 99.9 8.6E-24 3E-28 176.5 1.2 181 2-182 86-296 (461)
86 4g8a_A TOLL-like receptor 4; l 99.9 7E-21 2.4E-25 164.7 19.0 208 23-231 369-580 (635)
87 2ca6_A RAN GTPase-activating p 99.9 3.2E-23 1.1E-27 169.3 2.4 229 16-245 23-306 (386)
88 2v9t_B SLIT homolog 2 protein 99.9 4.5E-21 1.5E-25 144.5 13.5 161 76-254 14-174 (220)
89 2o6s_A Variable lymphocyte rec 99.9 2.6E-20 8.8E-25 139.3 15.5 149 5-157 11-159 (208)
90 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-19 8.4E-24 153.7 23.1 213 2-245 41-287 (622)
91 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-20 5.5E-25 141.5 13.5 152 76-231 14-166 (220)
92 1jl5_A Outer protein YOPM; leu 99.8 3.7E-21 1.3E-25 160.0 10.7 211 2-232 12-251 (454)
93 1jl5_A Outer protein YOPM; leu 99.8 9.1E-20 3.1E-24 151.6 18.7 218 2-241 154-421 (454)
94 2xot_A Amphoterin-induced prot 99.8 1.3E-20 4.4E-25 152.5 12.9 176 52-231 21-202 (361)
95 2o6s_A Variable lymphocyte rec 99.8 6.6E-20 2.3E-24 137.0 14.5 180 29-243 11-190 (208)
96 4ay9_X Follicle-stimulating ho 99.8 6.7E-20 2.3E-24 147.7 15.6 202 5-211 13-219 (350)
97 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5.1E-24 153.4 18.1 189 26-243 60-255 (571)
98 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.5E-24 146.6 16.3 238 1-244 30-272 (350)
99 1h6t_A Internalin B; cell adhe 99.8 4.1E-19 1.4E-23 139.4 15.0 172 22-208 43-214 (291)
100 2v9t_B SLIT homolog 2 protein 99.8 7.2E-19 2.5E-23 132.4 15.4 152 4-159 14-165 (220)
101 1h6t_A Internalin B; cell adhe 99.8 2.5E-19 8.7E-24 140.6 13.3 190 29-235 28-217 (291)
102 3e6j_A Variable lymphocyte rec 99.8 8.1E-19 2.8E-23 133.0 15.3 152 75-231 21-172 (229)
103 3cvr_A Invasion plasmid antige 99.8 1.7E-18 5.9E-23 146.8 18.0 187 2-217 60-253 (571)
104 1m9s_A Internalin B; cell inva 99.8 9.4E-19 3.2E-23 149.9 14.9 172 22-208 40-211 (605)
105 2xot_A Amphoterin-induced prot 99.8 7.9E-19 2.7E-23 142.0 13.4 176 4-183 21-202 (361)
106 1m9s_A Internalin B; cell inva 99.8 6.8E-19 2.3E-23 150.8 13.7 198 25-239 21-218 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-18 1E-22 129.0 15.5 152 4-159 14-166 (220)
108 3e6j_A Variable lymphocyte rec 99.8 7.5E-18 2.5E-22 127.7 16.5 150 5-159 23-172 (229)
109 3sb4_A Hypothetical leucine ri 99.8 3.2E-19 1.1E-23 142.5 6.2 194 48-245 100-324 (329)
110 4ezg_A Putative uncharacterize 99.8 1.2E-17 4E-22 123.7 13.5 154 21-183 40-194 (197)
111 3sb4_A Hypothetical leucine ri 99.8 1.4E-18 4.6E-23 138.9 8.7 221 1-225 49-328 (329)
112 2wfh_A SLIT homolog 2 protein 99.8 1E-17 3.4E-22 123.5 12.5 138 101-256 13-150 (193)
113 4ezg_A Putative uncharacterize 99.8 7.3E-18 2.5E-22 124.8 11.5 150 73-231 44-194 (197)
114 1w8a_A SLIT protein; signaling 99.7 3.3E-17 1.1E-21 120.7 12.3 109 123-231 30-139 (192)
115 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.2E-22 129.1 10.2 168 25-208 19-186 (263)
116 1xeu_A Internalin C; cellular 99.7 2.1E-17 7.3E-22 127.7 10.8 166 4-185 22-187 (263)
117 3ogk_B Coronatine-insensitive 99.7 3.3E-19 1.1E-23 153.3 0.1 220 16-236 284-531 (592)
118 3ogk_B Coronatine-insensitive 99.7 4.8E-18 1.6E-22 146.1 4.7 102 3-106 140-251 (592)
119 1dce_A Protein (RAB geranylger 99.7 2.6E-19 8.9E-24 152.4 -3.4 190 22-235 346-550 (567)
120 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4.1E-21 115.2 10.7 134 23-159 22-160 (168)
121 4fdw_A Leucine rich hypothetic 99.7 4.7E-16 1.6E-20 127.0 15.3 228 3-242 137-369 (401)
122 2p1m_B Transport inhibitor res 99.7 5.4E-18 1.8E-22 145.8 1.7 107 2-108 106-221 (594)
123 1dce_A Protein (RAB geranylger 99.7 1.1E-18 3.9E-23 148.5 -3.7 201 1-225 349-567 (567)
124 2je0_A Acidic leucine-rich nuc 99.7 3.4E-16 1.2E-20 110.5 8.9 127 25-154 17-148 (149)
125 2ell_A Acidic leucine-rich nuc 99.7 4.9E-16 1.7E-20 111.9 9.8 133 98-232 24-161 (168)
126 2o6r_A Variable lymphocyte rec 99.7 2.1E-15 7.1E-20 109.6 12.6 114 122-235 28-141 (177)
127 1w8a_A SLIT protein; signaling 99.6 3.2E-15 1.1E-19 110.0 13.0 128 4-135 11-139 (192)
128 2p1m_B Transport inhibitor res 99.6 3.2E-17 1.1E-21 141.0 2.3 69 167-236 429-499 (594)
129 4b8c_D Glucose-repressible alc 99.6 1.2E-16 4E-21 140.0 5.7 178 42-230 217-403 (727)
130 4fdw_A Leucine rich hypothetic 99.6 1E-14 3.6E-19 119.1 16.1 220 2-231 158-383 (401)
131 2wfh_A SLIT homolog 2 protein 99.6 8.8E-15 3E-19 107.7 14.0 126 4-134 13-138 (193)
132 2je0_A Acidic leucine-rich nuc 99.6 9.8E-16 3.4E-20 108.1 8.3 110 124-235 19-130 (149)
133 4b8c_D Glucose-repressible alc 99.6 2.5E-16 8.6E-21 137.9 4.3 191 25-228 173-369 (727)
134 2o6r_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 104.2 13.7 127 4-134 10-136 (177)
135 3g39_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 104.5 10.2 105 124-231 11-115 (170)
136 2r9u_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 102.0 10.6 104 125-231 15-118 (174)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.8E-19 103.7 8.9 133 20-159 14-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7E-19 104.2 7.8 132 45-183 15-153 (176)
139 3g39_A Variable lymphocyte rec 99.5 8.5E-13 2.9E-17 95.0 11.3 104 4-111 12-115 (170)
140 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 94.3 11.3 102 5-110 16-117 (174)
141 1ds9_A Outer arm dynein; leuci 99.4 7.5E-16 2.6E-20 114.0 -6.3 151 24-182 17-184 (198)
142 2ifg_A High affinity nerve gro 99.4 7.3E-13 2.5E-17 106.4 10.4 103 126-231 12-116 (347)
143 1ds9_A Outer arm dynein; leuci 99.4 6E-15 2.1E-19 109.1 -2.7 114 117-235 43-157 (198)
144 3un9_A NLR family member X1; l 99.4 3.9E-15 1.4E-19 120.4 -4.3 164 48-211 71-256 (372)
145 3un9_A NLR family member X1; l 99.3 7E-14 2.4E-18 113.1 -0.8 162 24-185 71-254 (372)
146 4fs7_A Uncharacterized protein 99.3 5.5E-11 1.9E-15 97.1 13.6 201 17-227 154-375 (394)
147 4gt6_A Cell surface protein; l 99.3 2.9E-10 9.8E-15 92.9 16.4 77 3-81 66-145 (394)
148 4fs7_A Uncharacterized protein 99.2 1.5E-10 5E-15 94.6 14.1 216 19-245 134-369 (394)
149 2ifg_A High affinity nerve gro 99.2 7.1E-11 2.4E-15 94.8 10.0 103 5-111 12-116 (347)
150 4gt6_A Cell surface protein; l 99.1 2.2E-09 7.5E-14 87.6 16.2 224 14-245 52-360 (394)
151 4h09_A Hypothetical leucine ri 99.0 1.7E-08 6E-13 81.8 17.3 100 142-244 236-335 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.3E-08 7.8E-13 81.2 16.8 126 117-246 235-360 (379)
153 2ra8_A Uncharacterized protein 98.9 6.7E-10 2.3E-14 89.2 5.1 143 95-240 169-329 (362)
154 2ra8_A Uncharacterized protein 98.9 2.3E-09 7.8E-14 86.1 7.6 199 25-229 107-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 6.3E-09 2.1E-13 75.7 1.4 115 119-233 33-166 (185)
156 3e4g_A ATP synthase subunit S, 98.6 2.8E-08 9.7E-13 70.8 3.8 88 146-233 61-155 (176)
157 1io0_A Tropomodulin; LRR prote 98.6 2.7E-08 9.3E-13 72.3 3.4 119 17-135 28-164 (185)
158 3e4g_A ATP synthase subunit S, 98.5 4.7E-08 1.6E-12 69.7 3.8 85 25-110 61-151 (176)
159 3rw6_A Nuclear RNA export fact 98.3 9.4E-07 3.2E-11 67.6 5.9 82 22-105 167-258 (267)
160 3rfe_A Platelet glycoprotein I 98.3 1.2E-06 4.1E-11 59.6 5.2 67 174-256 12-79 (130)
161 3rw6_A Nuclear RNA export fact 98.2 2.1E-06 7.2E-11 65.7 6.6 107 21-128 137-257 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 3.1E-05 1.1E-09 56.2 2.1 110 122-231 41-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00035 1.2E-08 50.7 3.9 92 142-233 37-144 (197)
164 3rfe_A Platelet glycoprotein I 97.1 0.0013 4.4E-08 44.4 6.4 55 5-61 12-67 (130)
165 2lz0_A Uncharacterized protein 87.9 0.76 2.6E-05 29.0 4.2 42 161-203 11-52 (100)
166 2lz0_A Uncharacterized protein 82.5 3.2 0.00011 26.1 5.2 47 11-58 6-52 (100)
No 1
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=225.21 Aligned_cols=239 Identities=24% Similarity=0.281 Sum_probs=209.5
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++++.|++++|.+++..+..|..+++|++|++++|.+....+.+|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 36889999999999888889999999999999999999777888999999999999999998777778889999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCc-ccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNM-FHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
++|.+. .++...+..+++|++|+++++. +.......+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+.
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 999998 7777777789999999999854 44344457888999999999999988 444 4778889999999999998
Q ss_pred ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh
Q 045571 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
+..+..+..+++|++|++.+|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|+|++|++.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~-------- 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN-------- 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE--------
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc--------
Confidence 777888999999999999999998888888999999999999999999888888899999999999999998
Q ss_pred cccccccccccccceee
Q 045571 240 FYSSSACFCNLYSFACS 256 (260)
Q Consensus 240 ~l~~l~~~~~~~~~~~~ 256 (260)
|+|++.|+..|
T Consensus 293 ------CdC~l~~l~~~ 303 (440)
T 3zyj_A 293 ------CNCDILWLSWW 303 (440)
T ss_dssp ------CSSTTHHHHHH
T ss_pred ------CCCCchHHHHH
Confidence 99998887543
No 2
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=6.3e-32 Score=225.24 Aligned_cols=237 Identities=22% Similarity=0.243 Sum_probs=208.2
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 36899999999999888889999999999999999999877888999999999999999998777777889999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCc-ccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNM-FHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
++|.+. .++...+..+++|+.|+++++. +.......+..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+.
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 999998 7777777889999999999844 443444568889999999999999884 33 5778889999999999998
Q ss_pred ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh
Q 045571 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
+..+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~-------- 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN-------- 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE--------
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC--------
Confidence 777888999999999999999998877888999999999999999999877788889999999999999998
Q ss_pred cccccccccccccce
Q 045571 240 FYSSSACFCNLYSFA 254 (260)
Q Consensus 240 ~l~~l~~~~~~~~~~ 254 (260)
|+|++.|+.
T Consensus 304 ------CdC~~~~l~ 312 (452)
T 3zyi_A 304 ------CDCDILWLA 312 (452)
T ss_dssp ------CSTTTHHHH
T ss_pred ------CCCCchHHH
Confidence 999888764
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-32 Score=217.04 Aligned_cols=240 Identities=34% Similarity=0.489 Sum_probs=215.8
Q ss_pred cccEEEecCCccCC--CccccccCCCCccEEEccC-CcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEE
Q 045571 2 RVTVLNISRLNLTG--TIPSQLGNLSSLQSLNLSF-NRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHL 78 (260)
Q Consensus 2 ~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 78 (260)
+++.|+++++.+.+ ..|..+..+++|++|++++ +.+.+..|..|.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 58899999999998 8899999999999999995 88888889999999999999999999988888899999999999
Q ss_pred eccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCC-CCcEEEccCccCCCCCcccccCCCcccEEEcCCcc
Q 045571 79 DFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCT-YLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNR 157 (260)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 157 (260)
++++|.+...++..+ ..+++|++|++++|.+....+..+..++ .|+.|++++|.+.+..|..+..++ |+.|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999875555554 4799999999999999877888888887 999999999999877888888877 9999999999
Q ss_pred ccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHh
Q 045571 158 LQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINF 237 (260)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 237 (260)
+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988888999999999999999999865554 778899999999999999888999999999999999999999888876
Q ss_pred hhcccccc
Q 045571 238 LQFYSSSA 245 (260)
Q Consensus 238 ~~~l~~l~ 245 (260)
..+++|+
T Consensus 288 -~~l~~L~ 294 (313)
T 1ogq_A 288 -GNLQRFD 294 (313)
T ss_dssp -TTGGGSC
T ss_pred -ccccccC
Confidence 5555554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=3.8e-31 Score=233.57 Aligned_cols=243 Identities=36% Similarity=0.560 Sum_probs=171.6
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 46667777777666667777777777777777777776677777777777777777777776667777777777777777
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
+|.+.+.++..+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 475 ~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 475 FNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp SSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCcccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 777764444443 3677777777777777666666777777777777777777666677777777777777777765533
Q ss_pred cccc----------------------------------------------------------------------ccCCcc
Q 045571 162 IPRE----------------------------------------------------------------------FGSLAE 171 (260)
Q Consensus 162 ~~~~----------------------------------------------------------------------~~~~~~ 171 (260)
.|.. +..+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 3321 222455
Q ss_pred ccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 172 LELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 172 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
|+.|++++|.+.+.+|..+..++.|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+|+++..+..|+
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 67777777777777777777777777777777777777777777777777777777777777777777766554
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=221.70 Aligned_cols=253 Identities=21% Similarity=0.216 Sum_probs=181.5
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++..+..|..+++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 46788888888887777777888888888888888877655566777888888888888777666666777777777777
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCC--------------
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLT-------------- 146 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------- 146 (260)
++|.+. .+....+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+.+..+..+..++
T Consensus 136 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 136 GDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp CCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 777766 44444445666777777776666544334455555666666655555433333333333
Q ss_pred ----------cccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccC
Q 045571 147 ----------KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN 216 (260)
Q Consensus 147 ----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 216 (260)
+|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 5555666666665443456777888899999988888776777888889999999999988777888888
Q ss_pred CCcccEEEcCCCccccchhHhhhccccc----------ccccccccce
Q 045571 217 LAKLEMMSLSENNLQGVIINFLQFYSSS----------ACFCNLYSFA 254 (260)
Q Consensus 217 ~~~L~~L~l~~n~~~~~~~~~~~~l~~l----------~~~~~~~~~~ 254 (260)
+++|+.|++++|.++++.+..+..+++| .|+|.+.|+.
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 9999999999999988888777766553 3888887753
No 6
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.9e-31 Score=209.74 Aligned_cols=230 Identities=22% Similarity=0.320 Sum_probs=192.9
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccc--cchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEE
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS--IPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHL 78 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 78 (260)
++|++|+++++.+++..+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3688999999999866666688999999999999988733 3667778899999999999887 355567888999999
Q ss_pred eccCCCCCCccch-hhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCC-CCcccccCCCcccEEEcCCc
Q 045571 79 DFSQNTLSGEIPA-NICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG-AIPKDIGNLTKLMELYLGRN 156 (260)
Q Consensus 79 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 156 (260)
++++|.+. .++. ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|
T Consensus 107 ~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 99999887 4433 456688999999999998876777778888999999999998875 46778888899999999999
Q ss_pred cccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCC-cccEEEcCCCcccc
Q 045571 157 RLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA-KLEMMSLSENNLQG 232 (260)
Q Consensus 157 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~ 232 (260)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|++..
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 98877678888889999999999999877667788889999999999999888888888885 89999999999873
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=5.1e-31 Score=220.01 Aligned_cols=108 Identities=24% Similarity=0.270 Sum_probs=78.2
Q ss_pred CcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCC
Q 045571 138 IPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL 217 (260)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 217 (260)
.+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 34455566677777777777765556667777777777777777766666777777888888888888876667777788
Q ss_pred CcccEEEcCCCccccchhHhhhcccccc
Q 045571 218 AKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
++|+.|++++|.++++.+..+..+++|+
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccccEEECCCCccccCCHhHhccCCccc
Confidence 8888888888888877776666665543
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=4.4e-30 Score=201.62 Aligned_cols=224 Identities=22% Similarity=0.269 Sum_probs=198.2
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
+.++.++++++ .+|..+ .+++++|+++++.+++..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 46778888887 455443 479999999999999777788999999999999999998777888999999999999999
Q ss_pred C-CCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccc
Q 045571 84 T-LSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEI 162 (260)
Q Consensus 84 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 162 (260)
. +. .++...+..+++|++|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 65 666666678999999999999998777788899999999999999998666667889999999999999998666
Q ss_pred cccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 163 PREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 667888999999999999998887889999999999999999999877788999999999999999988
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.4e-30 Score=228.45 Aligned_cols=236 Identities=39% Similarity=0.611 Sum_probs=215.4
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 47899999999999999999999999999999999999889999999999999999999999888999999999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCccc-------------------
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKD------------------- 141 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------- 141 (260)
++|.+.+.++..+ ..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..
T Consensus 498 ~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 498 SNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred cCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 9999986666655 47999999999999998888889999999999999999876544432
Q ss_pred ---------------------------------------------------ccCCCcccEEEcCCccccccccccccCCc
Q 045571 142 ---------------------------------------------------IGNLTKLMELYLGRNRLQGEIPREFGSLA 170 (260)
Q Consensus 142 ---------------------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 170 (260)
+..+++|+.|++++|.+.+..|..+..++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 33356789999999999999999999999
Q ss_pred cccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHh
Q 045571 171 ELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINF 237 (260)
Q Consensus 171 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 237 (260)
.|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..++.++.|+.|++++|++.+.+|+.
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998853
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=5.7e-30 Score=213.66 Aligned_cols=245 Identities=21% Similarity=0.231 Sum_probs=182.9
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCcc-ccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEe
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSG-SIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLD 79 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 79 (260)
++|++|++++|.+++..+..|..+++|++|++++|.+.. ..+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 468899999999988778888999999999999998863 3466788899999999999988877778888889999999
Q ss_pred ccCCCCCCccch-hhhcCCCcceEEecCCCcccCCCCcc-ccCCCCCcEEEccCccCCCCCcccccCC------------
Q 045571 80 FSQNTLSGEIPA-NICSNLPFLEYISLSKNMFHGGIPSA-LSKCTYLQILSLSFNDFSGAIPKDIGNL------------ 145 (260)
Q Consensus 80 l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------ 145 (260)
+++|.+.+..+. ..+..+++|++|++++|.+....+.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 998888643222 33567888889998888887655554 6788888888888887765544433322
Q ss_pred ----------------------CcccEEEcCCccc---------------------------------------------
Q 045571 146 ----------------------TKLMELYLGRNRL--------------------------------------------- 158 (260)
Q Consensus 146 ----------------------~~L~~L~l~~~~~--------------------------------------------- 158 (260)
++|++|++++|.+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 3455555555543
Q ss_pred ------------------cccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcc
Q 045571 159 ------------------QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKL 220 (260)
Q Consensus 159 ------------------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 220 (260)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 33334456666777788887777776666677777888888888888876667777778888
Q ss_pred cEEEcCCCccccchhHhhhcccccc
Q 045571 221 EMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 221 ~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+.|++++|.+.+..|.++..+++|+
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEECCCCcccccChhhcccccccc
Confidence 8888888888877777777766655
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.5e-30 Score=220.11 Aligned_cols=252 Identities=21% Similarity=0.293 Sum_probs=164.4
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCC-chhhccCCCccEEe
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAF-PSFIFNKSSLQHLD 79 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~ 79 (260)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 35777777777776 55666677777777777777776555666666666666666666554322 22344555555555
Q ss_pred ccCCCCCC-------------------------ccchhhhcCCCcceEEecCCCcccCCCC-ccccCCCCCcEEEccCcc
Q 045571 80 FSQNTLSG-------------------------EIPANICSNLPFLEYISLSKNMFHGGIP-SALSKCTYLQILSLSFND 133 (260)
Q Consensus 80 l~~~~~~~-------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 133 (260)
+++|.+.. ......+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 55555431 2222223344555555555555443322 235556666666666666
Q ss_pred CCCCCcccccCCCcccEEEcCCcccccc---ccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCc
Q 045571 134 FSGAIPKDIGNLTKLMELYLGRNRLQGE---IPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEI 210 (260)
Q Consensus 134 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 210 (260)
+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 6655566666777777777777776532 2245667777888888888877666777888888888888888888777
Q ss_pred chhccCCCcccEEEcCCCccccchhHhhhccccc----------ccccccccce
Q 045571 211 PREFSNLAKLEMMSLSENNLQGVIINFLQFYSSS----------ACFCNLYSFA 254 (260)
Q Consensus 211 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l----------~~~~~~~~~~ 254 (260)
|..+..++.| .|++++|.+++.+|..+..+++| .|+|++.|+.
T Consensus 517 ~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 569 (606)
T 3t6q_A 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569 (606)
T ss_dssp GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred hhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHH
Confidence 8888888888 88888888888888777666543 3788876654
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=7.1e-30 Score=214.30 Aligned_cols=244 Identities=18% Similarity=0.198 Sum_probs=202.9
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 36899999999999888889999999999999999999888999999999999999999998777777889999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
++|.+. .+....+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 112 s~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 999998 5556666789999999999999887777788999999999999999986666678899999999999998875
Q ss_pred cccccccCCccccEEEcc------------------------CCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccC
Q 045571 161 EIPREFGSLAELELMSLR------------------------ESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN 216 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~------------------------~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 216 (260)
..+..+..+++|++|+++ +|.+....+..+..+++|+.|++++|.+.+..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 555555555555555554 45555333356677788888888888887666677788
Q ss_pred CCcccEEEcCCCccccchhHhhhcccccc
Q 045571 217 LAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 217 ~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+++|+.|++++|.+.++.+.++..+++|+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCC
Confidence 88888888888888888888877776665
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.1e-30 Score=205.97 Aligned_cols=226 Identities=29% Similarity=0.469 Sum_probs=204.9
Q ss_pred CcccEEEecC-CccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEe
Q 045571 1 HRVTVLNISR-LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLD 79 (260)
Q Consensus 1 ~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 79 (260)
++|++|++++ +.+.+..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 4789999995 899989999999999999999999999988899999999999999999999988899999999999999
Q ss_pred ccCCCCCCccchhhhcCCC-cceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccc
Q 045571 80 FSQNTLSGEIPANICSNLP-FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158 (260)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 158 (260)
+++|.+.+.++..+. .++ +|++|++++|.+....+..+..+. |+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 156 L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 156 FDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred CcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 999999866777665 565 999999999999877788888877 99999999999878888999999999999999999
Q ss_pred cccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCcc
Q 045571 159 QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNL 230 (260)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 230 (260)
.+..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.. ..+++|+.+++++|+.
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 855554 778899999999999999888999999999999999999999877775 7899999999999983
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.3e-29 Score=198.03 Aligned_cols=232 Identities=20% Similarity=0.291 Sum_probs=190.1
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+.. .+..+ .++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~--~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhh--cccccEEEC
Confidence 468889999999987777788999999999999999987778889999999999999998873 33333 268899999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccC--CCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHG--GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 158 (260)
++|.+. .++...+..+++|+.|+++++.+.. ..+..+..+++|+.|++++|.+. ..|..+. ++|++|++++|.+
T Consensus 129 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCC
T ss_pred CCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcC
Confidence 999887 6666667789999999999988753 45567788889999999999887 4444443 6888999999988
Q ss_pred cccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhh
Q 045571 159 QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFL 238 (260)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 238 (260)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++++.+.++
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 8666778888889999999999888766667888889999999999888 667778888999999999999888877766
Q ss_pred hc
Q 045571 239 QF 240 (260)
Q Consensus 239 ~~ 240 (260)
..
T Consensus 284 ~~ 285 (330)
T 1xku_A 284 CP 285 (330)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=210.13 Aligned_cols=232 Identities=20% Similarity=0.209 Sum_probs=186.2
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|+++++.+++..+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 36889999999998777778899999999999999998777788899999999999999988666666888999999999
Q ss_pred cCCCCCCccch-hhhcCCCcceEEecCCCc-ccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccc
Q 045571 81 SQNTLSGEIPA-NICSNLPFLEYISLSKNM-FHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158 (260)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 158 (260)
++|.+. .++. ..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 999887 5665 566688999999999884 5545566788889999999999998877778888889999999999987
Q ss_pred cccccccccCCccccEEEccCCcCcCCC-------------------------------cccccCcCCCcEEEcccCCCC
Q 045571 159 QGEIPREFGSLAELELMSLRESNLQGGI-------------------------------PQELGNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~-------------------------------~~~~~~~~~L~~L~l~~n~l~ 207 (260)
.......+..+++|+.|++++|.+.+.. |..+..+++|++|++++|.++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 6333334445788999999998876532 334566788888888888888
Q ss_pred CCcchhccCCCcccEEEcCCCccccc
Q 045571 208 GEIPREFSNLAKLEMMSLSENNLQGV 233 (260)
Q Consensus 208 ~~~~~~~~~~~~L~~L~l~~n~~~~~ 233 (260)
...+..+..+++|++|++++|++...
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 55444467888888888888888744
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.7e-29 Score=200.70 Aligned_cols=224 Identities=22% Similarity=0.289 Sum_probs=121.4
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+++.|+++++.++ .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. ..|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4556666666666 44555555666666666666666 55556666666666666666665 445556666666666666
Q ss_pred CCCCCCccchhhh--------cCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEc
Q 045571 82 QNTLSGEIPANIC--------SNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYL 153 (260)
Q Consensus 82 ~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 153 (260)
+|.....++..+. ..+++|++|++++|.+. ..+..+..+++|+.|++++|.+. ..+..+..+++|+.|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence 6554434444331 12455555555555544 34444555555555555555554 23334445555555555
Q ss_pred CCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCcc
Q 045571 154 GRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNL 230 (260)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 230 (260)
++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..++.+++++.+++..+.+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 55554444455555555555555555554444454555555555555555555545555555555555555554433
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=7.5e-29 Score=202.98 Aligned_cols=133 Identities=22% Similarity=0.200 Sum_probs=71.9
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
++++++++++.++...+..+..+++|++|++++|.+++..+.+|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 45555555555554444445555555555555555554444455555555555555555554444555555555555555
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCC
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS 135 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 135 (260)
+|.+. .++..++..+++|++|++++|.+....+..+..+++|+.|++++|.++
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 55555 445444445555555555555554444444555555555555555443
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.6e-28 Score=194.76 Aligned_cols=228 Identities=25% Similarity=0.318 Sum_probs=136.2
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
+++++|++++|.+.+..+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.+.. .+..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEEC
Confidence 367888888888887777788888888888888888887777888888888888888888773 333332 67888888
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccC--CCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHG--GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRL 158 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 158 (260)
++|.+. .++...+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+++ .|..+. ++|+.|++++|.+
T Consensus 131 ~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 888887 6666666678888888888887642 333444443 44444444444442 222221 3444444444444
Q ss_pred cccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHh
Q 045571 159 QGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINF 237 (260)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 237 (260)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++++.+.+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 4333344444444444444444444333334444444444444444444 33333444444444444444444444433
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.3e-28 Score=209.85 Aligned_cols=242 Identities=24% Similarity=0.280 Sum_probs=174.1
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|+.++++++.+++..+..|..+++|++|++++|.++ ..|..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 5789999999999888888999999999999999998 678889999999999999999987778889999999999999
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCC--CccccCCCCCcEEEccCccCCCCCcccccCCC-------------
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGI--PSALSKCTYLQILSLSFNDFSGAIPKDIGNLT------------- 146 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------- 146 (260)
+|.+...++...+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+..++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 998876666666667888888888887765433 44555666666666666655434344444444
Q ss_pred ------------cccEEEcCCccccccccccccCCccccEEEccCCcCcCC---CcccccCcCCCcEEEcccCCCCCCcc
Q 045571 147 ------------KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGG---IPQELGNLAKLEMLQLFQNNLTGEIP 211 (260)
Q Consensus 147 ------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~ 211 (260)
+|+.|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 455555555544444444455555666666666655431 12345566666666666666665556
Q ss_pred hhccCCCcccEEEcCCCccccchhHhhhccccc
Q 045571 212 REFSNLAKLEMMSLSENNLQGVIINFLQFYSSS 244 (260)
Q Consensus 212 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 244 (260)
..+..+++|+.|++++|.+++.+|+++..++.+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 667777777777777777777777777766655
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=6.1e-28 Score=210.78 Aligned_cols=256 Identities=20% Similarity=0.218 Sum_probs=174.6
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcC----------------------------ccccchhhhcCCCCc
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRL----------------------------SGSIPSAIFTMYTLK 52 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------------------------~~~~~~~l~~l~~L~ 52 (260)
++|+.|++++|.+.+..+..|..+++|++|++++|.+ .+..+.+|..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 3577777777777776667777777777777766542 222233344444444
Q ss_pred EEEccCcccCCCC-chhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCccc--CCCCccccCCCCCcEEEc
Q 045571 53 YVSFRENQLSGAF-PSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFH--GGIPSALSKCTYLQILSL 129 (260)
Q Consensus 53 ~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l 129 (260)
+|++++|.+.+.. +..+..+++|++|++++|.+. .+....+..+++|+.|++.++.+. ...+..+..+++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 4444444443221 133444444444444444443 233333334555555555555443 234566777888999999
Q ss_pred cCccCCCCCcccccCCCcccEEEcCCcccccccc--------ccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEc
Q 045571 130 SFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIP--------REFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQL 201 (260)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 201 (260)
++|.+++..+..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+....+..+.++++|+.|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 9998886666778888899999999998764321 23677889999999999998665667899999999999
Q ss_pred ccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh-cccc----------ccccccc-ccceeee
Q 045571 202 FQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ-FYSS----------SACFCNL-YSFACSL 257 (260)
Q Consensus 202 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~----------l~~~~~~-~~~~~~~ 257 (260)
++|.+++..+..+..+++|+.|++++|.++++++..+. .+++ +.|+|++ .|+..|.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 99999987777889999999999999999999988665 4443 4589986 7776553
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=6.7e-28 Score=210.54 Aligned_cols=244 Identities=25% Similarity=0.242 Sum_probs=202.0
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46899999999999888888999999999999999999888889999999999999999998666667899999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCccccc--CCCcccEEEcCCccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIG--NLTKLMELYLGRNRL 158 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 158 (260)
++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999987 66666667899999999999998877777888899999999999998865555443 457899999999988
Q ss_pred cccccccccCC---------------------------ccccEEEccCCcCcCCCcccccCcCC--CcEEEcccCCCCCC
Q 045571 159 QGEIPREFGSL---------------------------AELELMSLRESNLQGGIPQELGNLAK--LEMLQLFQNNLTGE 209 (260)
Q Consensus 159 ~~~~~~~~~~~---------------------------~~L~~L~l~~~~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~ 209 (260)
.+..+..+..+ ++|+.|++++|.+.+..+..+..++. |++|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 76555554433 45667777777777666677776654 99999999998877
Q ss_pred cchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 210 IPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 210 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
.+..++.+++|++|++++|.+.+..+.++..+.+|+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 778888899999999999998888887777766655
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.9e-28 Score=192.35 Aligned_cols=238 Identities=20% Similarity=0.180 Sum_probs=200.5
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcc-cCCCCchhhccCCCccEEe
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQ-LSGAFPSFIFNKSSLQHLD 79 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~ 79 (260)
++|++|+++++.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 468999999999998777889999999999999999998778899999999999999997 7766678899999999999
Q ss_pred ccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc
Q 045571 80 FSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
+++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 112 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999998 565666678999999999999998666677889999999999999998665667889999999999999998
Q ss_pred ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh
Q 045571 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+. ..-...++.+..+.+.+....|+.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhC
Confidence 77788999999999999999999977777899999999999999998743221 11123344445556666655665554
Q ss_pred c
Q 045571 240 F 240 (260)
Q Consensus 240 ~ 240 (260)
.
T Consensus 270 g 270 (285)
T 1ozn_A 270 G 270 (285)
T ss_dssp T
T ss_pred C
Confidence 3
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.6e-28 Score=193.11 Aligned_cols=218 Identities=22% Similarity=0.296 Sum_probs=196.7
Q ss_pred CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceE
Q 045571 23 NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 102 (260)
..++++.|+++++.++ ..|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. .++..+ ..+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCE
Confidence 3588999999999998 67888889999999999999998 77888999999999999999998 777665 47999999
Q ss_pred EecCCCcccCCCCcccc---------CCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCcccc
Q 045571 103 ISLSKNMFHGGIPSALS---------KCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELE 173 (260)
Q Consensus 103 L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 173 (260)
|++++|......+..+. .+++|+.|++++|.++ ..|..+..+++|+.|++++|.+. ..+..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 99999877666666554 4899999999999998 77888999999999999999998 5666788999999
Q ss_pred EEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccccccc
Q 045571 174 LMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSAC 246 (260)
Q Consensus 174 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~ 246 (260)
+|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.+|+.+..+++++.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 9999999998888999999999999999999998899999999999999999999999999999999998764
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=198.35 Aligned_cols=237 Identities=21% Similarity=0.231 Sum_probs=207.1
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
.+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345667777777 5665554 7899999999999988888999999999999999999877778899999999999999
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCcc-CCCCCcccccCCCcccEEEcCCcccccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFND-FSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|+++++. +....+..+..+++|+.|++++|.+. .
T Consensus 122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 9998 7777777789999999999999986666788999999999999954 44334457888999999999999987 4
Q ss_pred ccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcc
Q 045571 162 IPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFY 241 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 241 (260)
.+ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.++++.+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 46788999999999999998888999999999999999999998888899999999999999999999999888888
Q ss_pred cccc
Q 045571 242 SSSA 245 (260)
Q Consensus 242 ~~l~ 245 (260)
++|+
T Consensus 279 ~~L~ 282 (440)
T 3zyj_A 279 HHLE 282 (440)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 7776
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.3e-28 Score=208.00 Aligned_cols=237 Identities=21% Similarity=0.211 Sum_probs=109.7
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
++.++++++.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 34444444444433333344444444444444444433334444444444444444444444444444444444444444
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCC------------------------
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAI------------------------ 138 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------ 138 (260)
|.+. .++..++..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..
T Consensus 133 n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~ 211 (597)
T 3oja_B 133 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 211 (597)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCT
T ss_pred CCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCc
Confidence 4444 344443334444444444444444333334444444444444444333211
Q ss_pred -----------------------------------cccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCc
Q 045571 139 -----------------------------------PKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQ 183 (260)
Q Consensus 139 -----------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 183 (260)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred hhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 123344445555555555555444455555555555555555554
Q ss_pred CCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccc
Q 045571 184 GGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYS 242 (260)
Q Consensus 184 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 242 (260)
+ ++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+.
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~ 348 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 348 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence 2 2333344555555555555555 3344444555555555555555544443343333
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-27 Score=195.64 Aligned_cols=240 Identities=21% Similarity=0.261 Sum_probs=177.5
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|+++++.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 46888999998888777778888899999999999888777777888899999999988888655556678888999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccC-------------------------------------CCC
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSK-------------------------------------CTY 123 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------------------~~~ 123 (260)
++|.+. .++...+..+++|++|++++|.+.......+.. .++
T Consensus 149 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 149 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 888887 555555667888888888888765332111111 124
Q ss_pred CcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEccc
Q 045571 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQ 203 (260)
Q Consensus 124 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 203 (260)
|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ .+..+..+++|++|++++
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred ccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence 55555555555532 456677888888888888876667788888888888888888874 345556778888888888
Q ss_pred CCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 204 NNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 204 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
|.+. ..|..+..+++|+.|++++|.+.++....+..++.|.
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~ 345 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred Ccce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEE
Confidence 8887 4455567778888888888888777655555555443
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-27 Score=198.71 Aligned_cols=236 Identities=19% Similarity=0.210 Sum_probs=206.1
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
+.++.++.+++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45666777776 4555554 78999999999999888899999999999999999998888888999999999999999
Q ss_pred CCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCcc-CCCCCcccccCCCcccEEEcCCccccccc
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFND-FSGAIPKDIGNLTKLMELYLGRNRLQGEI 162 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 162 (260)
.+. .++...+..+++|++|++++|.+.......+..+++|+.|+++++. +....+..+..+++|+.|++++|.+.+ .
T Consensus 134 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 998 7788777889999999999999986666788999999999999954 443344568889999999999999984 3
Q ss_pred cccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccc
Q 045571 163 PREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYS 242 (260)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 242 (260)
+ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.++++.+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 467889999999999999988889999999999999999999988888999999999999999999999888888777
Q ss_pred ccc
Q 045571 243 SSA 245 (260)
Q Consensus 243 ~l~ 245 (260)
+|+
T Consensus 291 ~L~ 293 (452)
T 3zyi_A 291 YLV 293 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.5e-27 Score=187.77 Aligned_cols=238 Identities=20% Similarity=0.256 Sum_probs=199.6
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++..+..|..+++|++|++++|.++. .|..+. ++|++|++++|.+....+..+..+++|++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 479999999999998889999999999999999999984 444433 79999999999998777788999999999999
Q ss_pred cCCCCCC-ccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc
Q 045571 81 SQNTLSG-EIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
++|.+.. ......+..+++|++|+++++.+.. .+..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 9998862 2444555689999999999999873 443332 78999999999998777788999999999999999998
Q ss_pred ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccC------CCcccEEEcCCCcccc-
Q 045571 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSN------LAKLEMMSLSENNLQG- 232 (260)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~~~~- 232 (260)
+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+.. .+.++.+++++|++..
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 766778888999999999999998 66778889999999999999999776666643 3788999999999864
Q ss_pred -chhHhhhcccccc
Q 045571 233 -VIINFLQFYSSSA 245 (260)
Q Consensus 233 -~~~~~~~~l~~l~ 245 (260)
+.|..+..+..++
T Consensus 309 ~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 309 EIQPSTFRCVYVRA 322 (330)
T ss_dssp GSCGGGGTTCCCGG
T ss_pred ccCcccccccccee
Confidence 4456666555543
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-27 Score=189.94 Aligned_cols=246 Identities=24% Similarity=0.289 Sum_probs=207.6
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCC--CchhhccCCCccEEecc
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGA--FPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~ 81 (260)
+.++.++++++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45778888887 4555443 7899999999999966566789999999999999988733 25667788999999999
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
+|.+. .++..+ ..+++|++|+++++.+..... ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 99987 566554 479999999999999875544 578899999999999999987777788899999999999999875
Q ss_pred -cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh
Q 045571 161 -EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 161 -~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5788889999999999999999877788899999999999999999987777889999999999999999999887776
Q ss_pred ccc-c----------cccccccccce
Q 045571 240 FYS-S----------SACFCNLYSFA 254 (260)
Q Consensus 240 ~l~-~----------l~~~~~~~~~~ 254 (260)
.++ + +.|+|++.|+.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~ 270 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFL 270 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred hhhccCCEEEccCCCeecccChHHHH
Confidence 663 3 33778776543
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.3e-28 Score=209.83 Aligned_cols=248 Identities=24% Similarity=0.281 Sum_probs=187.9
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCC--CchhhccCCCccEE
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGA--FPSFIFNKSSLQHL 78 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L 78 (260)
++|+.|++++|.+. .+| .+ .+++|++|++++|...... .+..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 307 ~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 307 FKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred ccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 46888999999884 566 44 8888888888888554222 556788888888888887654 26677788888888
Q ss_pred eccCCCCCCccchhhhcCCCcceEEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcc
Q 045571 79 DFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNR 157 (260)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 157 (260)
++++|.+. .++ ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 382 ~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 382 DLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp ECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred ECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 88888876 455 334578888888888888775555 567788888888888888876677778888888888888888
Q ss_pred ccc-cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhH
Q 045571 158 LQG-EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIIN 236 (260)
Q Consensus 158 ~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 236 (260)
+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++++..
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~- 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG- 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES-
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH-
Confidence 775 367777788888888888888877777778888888888888888887778888888888888888888875443
Q ss_pred hhhccc-c----------cccccccccceee
Q 045571 237 FLQFYS-S----------SACFCNLYSFACS 256 (260)
Q Consensus 237 ~~~~l~-~----------l~~~~~~~~~~~~ 256 (260)
.+..++ + +.|+|++.|+..|
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred hHhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence 354443 2 3388888776544
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.9e-27 Score=205.83 Aligned_cols=95 Identities=25% Similarity=0.378 Sum_probs=81.2
Q ss_pred ccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcc
Q 045571 162 IPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFY 241 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 241 (260)
.+..+..+++|+.|++++|.+.+..|..|.++++|++|++++|++++..+..+..+++|+.|+|++|.+++++|+++..+
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 34456667789999999999988888899999999999999999998888889999999999999999999999888765
Q ss_pred c-c----------cccccccccceee
Q 045571 242 S-S----------SACFCNLYSFACS 256 (260)
Q Consensus 242 ~-~----------l~~~~~~~~~~~~ 256 (260)
. + +.|+|++.|+.-|
T Consensus 566 ~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp CTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred hCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 2 3 4599999887654
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=3.8e-27 Score=184.08 Aligned_cols=221 Identities=21% Similarity=0.222 Sum_probs=185.6
Q ss_pred EEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCC
Q 045571 6 LNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTL 85 (260)
Q Consensus 6 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 85 (260)
++..+..+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344555555 4555554 6799999999999977777899999999999999999877777889999999999999999
Q ss_pred CCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCC-CcccccCCCcccEEEcCCccccccccc
Q 045571 86 SGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGA-IPKDIGNLTKLMELYLGRNRLQGEIPR 164 (260)
Q Consensus 86 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 164 (260)
. .++...+..+++|++|+++++.+....+..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.+.+..+.
T Consensus 89 ~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp C-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred C-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8 66666667899999999999998866666788999999999999999853 578899999999999999999866666
Q ss_pred cccCCcccc----EEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 165 EFGSLAELE----LMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 165 ~~~~~~~L~----~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
.+..+++|+ ++++++|.+.+..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 666666666 899999999865555554 358999999999999777777899999999999999998
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=5.1e-27 Score=188.08 Aligned_cols=232 Identities=22% Similarity=0.232 Sum_probs=199.2
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+++.++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4788999999988 5565553 799999999999997778889999999999999999987778889999999999999
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCC--CCcccccCCCcccEEEcCCcccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG--AIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
+|.+. .++..++ ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99998 6776653 799999999999986666778999999999999999853 556677776 8999999999988
Q ss_pred ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh
Q 045571 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
. .+..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 4 444433 68999999999999877788999999999999999999888888999999999999999998 4566677
Q ss_pred cccccc
Q 045571 240 FYSSSA 245 (260)
Q Consensus 240 ~l~~l~ 245 (260)
.+++|+
T Consensus 262 ~l~~L~ 267 (332)
T 2ft3_A 262 DLKLLQ 267 (332)
T ss_dssp GCTTCC
T ss_pred cCccCC
Confidence 766655
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-27 Score=190.30 Aligned_cols=230 Identities=20% Similarity=0.203 Sum_probs=192.8
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ...++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEEC
Confidence 478999999999998888899999999999999999985444 88999999999999988743 24589999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccc-cCCCcccEEEcCCcccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI-GNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 159 (260)
++|.+. .++.. .+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.
T Consensus 107 ~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999987 44433 46889999999999986666788889999999999999986555555 46789999999999987
Q ss_pred ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc-cchhHhh
Q 045571 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ-GVIINFL 238 (260)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~ 238 (260)
.. +. ...+++|++|++++|.+.+. +..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +.++.++
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 44 32 23478999999999999854 445888999999999999999 56778899999999999999998 7778888
Q ss_pred hcccccc
Q 045571 239 QFYSSSA 245 (260)
Q Consensus 239 ~~l~~l~ 245 (260)
..++.++
T Consensus 259 ~~~~~L~ 265 (317)
T 3o53_A 259 SKNQRVQ 265 (317)
T ss_dssp HTCHHHH
T ss_pred hccccce
Confidence 7776544
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.1e-27 Score=201.88 Aligned_cols=228 Identities=21% Similarity=0.266 Sum_probs=171.7
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 35677777777777666667777777777777777777666666677777777777777776555555566777777777
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCC-----------------------------------------------
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGG----------------------------------------------- 113 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------------------------------- 113 (260)
++|.+. .++...+..+++|++|++++|.+...
T Consensus 155 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 155 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 777666 44444444566666666666554321
Q ss_pred ------------CCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCc
Q 045571 114 ------------IPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN 181 (260)
Q Consensus 114 ------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (260)
.+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.
T Consensus 234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCC
Confidence 1123556788999999999998777889999999999999999998 456666778999999999999
Q ss_pred CcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccch
Q 045571 182 LQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVI 234 (260)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 234 (260)
+. .+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|++....
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence 98 56777888999999999999998553 677899999999999987544
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-26 Score=178.73 Aligned_cols=202 Identities=28% Similarity=0.330 Sum_probs=151.8
Q ss_pred CccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEec
Q 045571 26 SLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISL 105 (260)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 105 (260)
..+.++++++.++ ..|..+. +++++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 4566777777766 3443332 46777777777776555556777777777777777776 666666667777777777
Q ss_pred CCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCC
Q 045571 106 SKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGG 185 (260)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 185 (260)
+++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 77777655555667778888888888888766666677888888888888888755556677788888888888888866
Q ss_pred CcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 186 IPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 186 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6667888889999999999888776677888899999999998876
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=191.27 Aligned_cols=238 Identities=25% Similarity=0.251 Sum_probs=198.8
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
...+.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 34567777777 4555544 68999999999999766778999999999999999998777788999999999999999
Q ss_pred CCCCccchhhhcCCCcceEEecCCCcccCCCC-ccccCCCCCcEEEccCcc-CCCCCcccccCCCcccEEEcCCcccccc
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFHGGIP-SALSKCTYLQILSLSFND-FSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
.+. .++...+..+++|++|++++|.+..... ..+..+++|+.|++++|. +....+..+..+++|++|++++|.+.+.
T Consensus 111 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 998 7777777789999999999999874444 478899999999999994 6655567888999999999999999877
Q ss_pred ccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCC-------------------------------c
Q 045571 162 IPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGE-------------------------------I 210 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------------------------~ 210 (260)
.+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++. .
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 788999999999999999998744444455689999999999998753 3
Q ss_pred chhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 211 PREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 211 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
|..+..+++|+.|++++|.++++....+..+++|+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 44577899999999999999977666667766544
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-27 Score=197.95 Aligned_cols=229 Identities=20% Similarity=0.198 Sum_probs=194.7
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|+.|++++|.+++..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 379999999999998888999999999999999999986554 889999999999999887432 3489999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCccccc-CCCcccEEEcCCcccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIG-NLTKLMELYLGRNRLQ 159 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 159 (260)
++|.+. .++.. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.
T Consensus 107 ~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999998 44432 468899999999999877777888999999999999999876777775 7899999999999988
Q ss_pred ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc-cchhHhh
Q 045571 160 GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ-GVIINFL 238 (260)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~ 238 (260)
+. +. ...+++|+.|++++|.+.+.. ..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.++
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 44 22 335889999999999998654 458889999999999999994 6777899999999999999988 6677777
Q ss_pred hccccc
Q 045571 239 QFYSSS 244 (260)
Q Consensus 239 ~~l~~l 244 (260)
..++.+
T Consensus 259 ~~l~~L 264 (487)
T 3oja_A 259 SKNQRV 264 (487)
T ss_dssp TTCHHH
T ss_pred HhCCCC
Confidence 776544
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.2e-27 Score=207.13 Aligned_cols=228 Identities=15% Similarity=0.189 Sum_probs=123.4
Q ss_pred cccEEEecCCccCCC-----------------cccccc--CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcc-c
Q 045571 2 RVTVLNISRLNLTGT-----------------IPSQLG--NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQ-L 61 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l 61 (260)
+|++|++++|.+++. +|..++ .+++|++|++++|.+.+..|..+.++++|++|++++|. +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 456666666666653 555555 66666666666666555556666666666666666665 5
Q ss_pred CC-CCchhhccC------CCccEEeccCCCCCCccch-hhhcCCCcceEEecCCCcccC---------------------
Q 045571 62 SG-AFPSFIFNK------SSLQHLDFSQNTLSGEIPA-NICSNLPFLEYISLSKNMFHG--------------------- 112 (260)
Q Consensus 62 ~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--------------------- 112 (260)
++ ..|..+..+ ++|++|++++|.+. .++. ..+..+++|++|++++|.+.+
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc
Confidence 44 344444443 55555555555555 4444 122345555555555555442
Q ss_pred -CCCccccCCCC-CcEEEccCccCCCCCcccccCCC--cccEEEcCCcccccccccccc-------CCccccEEEccCCc
Q 045571 113 -GIPSALSKCTY-LQILSLSFNDFSGAIPKDIGNLT--KLMELYLGRNRLQGEIPREFG-------SLAELELMSLRESN 181 (260)
Q Consensus 113 -~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~ 181 (260)
..+..+..+++ |+.|++++|.+. ..|..+...+ +|+.|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 366 ~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 366 TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp EECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred ccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 33333444445 555555555555 4444444332 555555555555544444444 44556666666666
Q ss_pred CcCCCcccccCcCCCcEEEcccCCCCCCcchhccCC-------CcccEEEcCCCccc
Q 045571 182 LQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL-------AKLEMMSLSENNLQ 231 (260)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~~~ 231 (260)
+....+..+..+++|++|++++|.++...+..+... ++|+.|++++|.++
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 654333344456666666666666663322223222 26667777776666
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=7.7e-27 Score=208.04 Aligned_cols=245 Identities=18% Similarity=0.167 Sum_probs=149.2
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccc-cchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEe
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLD 79 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 79 (260)
+++++|++++|.+++..+..|..+++|++|++++|..... .|.+|.++++|++|++++|.+....+..+.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 4577788888877766677777777777777777744333 366677777777777777777666666677777777777
Q ss_pred ccCCCCCCccch-hhhcCCCcceEEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCCccccc--------------
Q 045571 80 FSQNTLSGEIPA-NICSNLPFLEYISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAIPKDIG-------------- 143 (260)
Q Consensus 80 l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------- 143 (260)
+++|.+.+..+. ..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 777766533332 234466667777776666654333 3456666666666666655432222111
Q ss_pred ------------CC------------------------------------------------------------------
Q 045571 144 ------------NL------------------------------------------------------------------ 145 (260)
Q Consensus 144 ------------~~------------------------------------------------------------------ 145 (260)
.+
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 11
Q ss_pred --CcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEE
Q 045571 146 --TKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMM 223 (260)
Q Consensus 146 --~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 223 (260)
++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 233444444444433334445555666666666666665555566666666677777666665556666666777777
Q ss_pred EcCCCccccchhHhhhcccccc
Q 045571 224 SLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 224 ~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
++++|.+..+.+.++..+++|+
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCC
T ss_pred ECCCCCCCccChhhhcCCCCCC
Confidence 7777766666666665555544
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.5e-27 Score=202.06 Aligned_cols=240 Identities=20% Similarity=0.264 Sum_probs=190.4
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCc-Ccc-ccchhhhcC------CCCcEEEccCcccCCCCch--hhc
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNR-LSG-SIPSAIFTM------YTLKYVSFRENQLSGAFPS--FIF 70 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~l~~~~~~--~~~ 70 (260)
++|++|++++|.+.+.+|..+..+++|++|++++|. +++ ..|..++.+ ++|++|++++|.++ ..|. .+.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 468899999999888889889999999999999998 776 677777665 78888888888877 5565 677
Q ss_pred cCCCccEEeccCCCCCCccc----------------------hhhhcCCCc-ceEEecCCCcccCCCCccccCCC--CCc
Q 045571 71 NKSSLQHLDFSQNTLSGEIP----------------------ANICSNLPF-LEYISLSKNMFHGGIPSALSKCT--YLQ 125 (260)
Q Consensus 71 ~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~ 125 (260)
++++|++|++++|.+.+.++ .. +..+++ |++|++++|.+. ..+..+.... +|+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 77777777777776653333 22 224566 888899888887 6666666544 899
Q ss_pred EEEccCccCCCCCccccc-------CCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCc-----
Q 045571 126 ILSLSFNDFSGAIPKDIG-------NLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNL----- 193 (260)
Q Consensus 126 ~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~----- 193 (260)
.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+...
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 999999999988887777 77899999999999985444556678999999999999984433444333
Q ss_pred --CCCcEEEcccCCCCCCcchhcc--CCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 194 --AKLEMLQLFQNNLTGEIPREFS--NLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 194 --~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
++|++|++++|.++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 39999999999999 6677776 99999999999999998 787777777766
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.8e-25 Score=180.10 Aligned_cols=221 Identities=23% Similarity=0.303 Sum_probs=126.3
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|..... ...+..+++|++|++
T Consensus 88 ~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTV 162 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEEC
T ss_pred CcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEe
Confidence 4688888888888753 357888888888888888874322 67777888888877754322 233566666777777
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCC--------------------ccccCCCCCcEEEccCccCCCCCcc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIP--------------------SALSKCTYLQILSLSFNDFSGAIPK 140 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~ 140 (260)
++|.+. ..+. +..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+.. .
T Consensus 163 ~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~ 238 (347)
T 4fmz_A 163 TESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS-P 238 (347)
T ss_dssp CSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred cCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc-c
Confidence 666665 2222 3356666666666665542211 01334444555555555544221 1
Q ss_pred cccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcc
Q 045571 141 DIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKL 220 (260)
Q Consensus 141 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 220 (260)
+..+++|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..++.+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 44455555555555554421 2344555555555555555432 234455555555555555555555555555566
Q ss_pred cEEEcCCCccccchh
Q 045571 221 EMMSLSENNLQGVII 235 (260)
Q Consensus 221 ~~L~l~~n~~~~~~~ 235 (260)
+.|++++|++++..|
T Consensus 314 ~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP 328 (347)
T ss_dssp SEEECCSSSCCCCGG
T ss_pred CEEEccCCccccccC
Confidence 666666655555544
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=4.8e-26 Score=178.80 Aligned_cols=203 Identities=25% Similarity=0.323 Sum_probs=157.5
Q ss_pred ccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcc
Q 045571 21 LGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFL 100 (260)
Q Consensus 21 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 100 (260)
+..++++++++++++.++ .+|..+. +++++|++++|.+....+..+..+++|++|++++|.+. .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 556677777777777776 3444332 56777777777777666666777777778888777776 44433 467788
Q ss_pred eEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCC
Q 045571 101 EYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRES 180 (260)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (260)
++|++++|.+. ..+..+..+++|+.|++++|+++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888888876 55666778888899999998888666677888889999999999888666667778889999999999
Q ss_pred cCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 181 NLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 181 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
.+....+..+..+++|++|++++|.++ .+|..+...++|+.+++++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 988666667788899999999999998 55666777889999999999987
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=195.32 Aligned_cols=107 Identities=27% Similarity=0.342 Sum_probs=76.3
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.+.. .|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 467888888888887777778888888888888888887667788888888888888887763 3333 6777777777
Q ss_pred cCCCCCC-ccchhhhcCCCcceEEecCCCccc
Q 045571 81 SQNTLSG-EIPANICSNLPFLEYISLSKNMFH 111 (260)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 111 (260)
++|.+.. .++. .+..+++|++|++++|.+.
T Consensus 98 ~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 98 SFNAFDALPICK-EFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCSSCCCCG-GGGGCTTCCEEEEEESSCC
T ss_pred cCCccccccchh-hhccCCcceEEEecCcccc
Confidence 7777763 1223 3346667777776666553
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=205.87 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=102.7
Q ss_pred CCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEc
Q 045571 122 TYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQL 201 (260)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 201 (260)
++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 45667777777666555677888999999999999998777888999999999999999998787889999999999999
Q ss_pred ccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 202 FQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 202 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
++|.+....+..+..+++|+.|++++|.++++.. +..+..+.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~ 387 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIF 387 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEE
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhc
Confidence 9999998888889999999999999999886543 33444433
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.4e-26 Score=195.59 Aligned_cols=107 Identities=27% Similarity=0.382 Sum_probs=82.0
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.++. .|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEEC
Confidence 467888888888887777888888888888888888887778888888888888888888773 3333 6788888888
Q ss_pred cCCCCCCccc-hhhhcCCCcceEEecCCCccc
Q 045571 81 SQNTLSGEIP-ANICSNLPFLEYISLSKNMFH 111 (260)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 111 (260)
++|.+. .++ ...+..+++|++|+++++.+.
T Consensus 129 s~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCS-BCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCcc-ccCchHhhcccCcccEEecCCCccc
Confidence 888876 333 234456777888887777664
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=194.91 Aligned_cols=155 Identities=18% Similarity=0.302 Sum_probs=93.7
Q ss_pred CCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCC--CCcccccCCCcccEEEcCCccccccccc-cccCCccc
Q 045571 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG--AIPKDIGNLTKLMELYLGRNRLQGEIPR-EFGSLAEL 172 (260)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L 172 (260)
.+++|++|++++|.+....+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+..+. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 34455555555555554444555555556666666655553 2233455555666666666655542332 34455566
Q ss_pred cEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccccc--------
Q 045571 173 ELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSS-------- 244 (260)
Q Consensus 173 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l-------- 244 (260)
++|++++|.+.+..+..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.++++.+..+..+++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 6666666665443333332 67788888888877 556666688899999999998886655556665543
Q ss_pred --ccccccccc
Q 045571 245 --ACFCNLYSF 253 (260)
Q Consensus 245 --~~~~~~~~~ 253 (260)
.|+|++.|+
T Consensus 479 ~~~c~c~~~~~ 489 (520)
T 2z7x_B 479 PWDCSCPRIDY 489 (520)
T ss_dssp CBCCCHHHHHH
T ss_pred CCcccCCchHH
Confidence 378887776
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.7e-26 Score=197.97 Aligned_cols=228 Identities=21% Similarity=0.189 Sum_probs=152.6
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccc--cchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEE
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS--IPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHL 78 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 78 (260)
++|+.|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.. .+..+..+++|++|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence 35677777776443222 455677777777777776644 25666777777777777776653 33556667777777
Q ss_pred eccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCC-CCcccccCCCcccEEEcCCcc
Q 045571 79 DFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSG-AIPKDIGNLTKLMELYLGRNR 157 (260)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 157 (260)
++++|.+....+...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 7777776633333445567777777777777765566666777777777777777664 256666777777777777777
Q ss_pred ccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCC-cccEEEcCCCcccc
Q 045571 158 LQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA-KLEMMSLSENNLQG 232 (260)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~ 232 (260)
+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..++ +|+.+++++|++..
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 76566666677777777777777776666667777777777777777776 4455566665 47777777777653
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.5e-26 Score=197.28 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=119.5
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+.+|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 36889999999998877888999999999999999998777788999999999999999988777777889999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCc-ccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcC
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNM-FHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLG 154 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 154 (260)
++|.+........+..+++|++|++++|. .....+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99988632222345578889999998887 333333567888888888888888876556555554444444333
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=9.3e-25 Score=175.95 Aligned_cols=229 Identities=23% Similarity=0.386 Sum_probs=177.6
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++..+ +..+++|++|++++|.++.. +++..+++|++|++++|.+....+ +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEEC
Confidence 579999999999986544 89999999999999999843 468999999999999999885433 789999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCc--------------------c
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP--------------------K 140 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~ 140 (260)
++|......+. +..+++|++|+++++.+....+ +..+++|+.|++++|.+.+..+ .
T Consensus 140 ~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 140 GANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp TTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence 99966534443 4589999999999998864332 7788888888888887763321 0
Q ss_pred cccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcc
Q 045571 141 DIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKL 220 (260)
Q Consensus 141 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 220 (260)
.+..+++|++|++++|.+....+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|
T Consensus 216 ~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 13445666777777776653322 66777788888888877643 4567788888888888888754 357788999
Q ss_pred cEEEcCCCccccchhHhhhcccccc
Q 045571 221 EMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 221 ~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+.|++++|.+.+..+..+..+++|+
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CEEECcCCcCCCcChhHhhccccCC
Confidence 9999999999988888888877766
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.7e-26 Score=194.73 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=93.7
Q ss_pred CCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCC--CcccccCCCcccEEEcCCcccccccc-ccccCCccc
Q 045571 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGA--IPKDIGNLTKLMELYLGRNRLQGEIP-REFGSLAEL 172 (260)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 172 (260)
.+++|++|++++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 344555555555555544445555555666666666655532 12345555566666666665554222 234455566
Q ss_pred cEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccccc--------
Q 045571 173 ELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSS-------- 244 (260)
Q Consensus 173 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l-------- 244 (260)
++|++++|.+.+..+..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.++++.+.++..+++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 6666666665443333222 57888888888887 455555688999999999999987665546665543
Q ss_pred --ccccccccc
Q 045571 245 --ACFCNLYSF 253 (260)
Q Consensus 245 --~~~~~~~~~ 253 (260)
.|+|++.|+
T Consensus 508 ~~~c~c~~~~~ 518 (562)
T 3a79_B 508 PWDCTCPGIRY 518 (562)
T ss_dssp CBCCCHHHHHH
T ss_pred CcCCCcchHHH
Confidence 478888776
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=195.75 Aligned_cols=225 Identities=21% Similarity=0.270 Sum_probs=121.8
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchh--------------------hhcCCCCcEEEccCccc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSA--------------------IFTMYTLKYVSFRENQL 61 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------l~~l~~L~~L~l~~~~l 61 (260)
+|+.++++++.+. .+|..+..+ +|++|++++|.+. ..|.. ...+++|++|++++|.+
T Consensus 283 ~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 283 NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359 (570)
T ss_dssp TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence 5666777777666 355555555 6666666666555 22221 03344455555555444
Q ss_pred CCCC--chhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCC
Q 045571 62 SGAF--PSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAI 138 (260)
Q Consensus 62 ~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~ 138 (260)
.... +..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred CccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 3221 334445555555555555544 23333 3345555555555555543322 34455556666666666555444
Q ss_pred cccccCCCcccEEEcCCcccc-ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCC
Q 045571 139 PKDIGNLTKLMELYLGRNRLQ-GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL 217 (260)
Q Consensus 139 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 217 (260)
+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 555555566666666666554 2345555555666666666666555545555556666666666666655555555566
Q ss_pred CcccEEEcCCCccc
Q 045571 218 AKLEMMSLSENNLQ 231 (260)
Q Consensus 218 ~~L~~L~l~~n~~~ 231 (260)
++|+.|++++|++.
T Consensus 518 ~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 518 TSLQKIWLHTNPWD 531 (570)
T ss_dssp TTCCEEECCSSCBC
T ss_pred cCCcEEEecCCccc
Confidence 66666666666655
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.6e-25 Score=197.96 Aligned_cols=236 Identities=21% Similarity=0.243 Sum_probs=154.4
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCc-Ccc-ccchhhhcCC-------CCcEEEccCcccCCCCch--hh
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNR-LSG-SIPSAIFTMY-------TLKYVSFRENQLSGAFPS--FI 69 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~l~~~~~~--~~ 69 (260)
++|+.|++++|.+.+..|..+..+++|+.|++++|. +++ ..|..+..++ +|++|++++|.+. ..|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 478999999999988999999999999999999998 876 6777776665 9999999999988 6666 78
Q ss_pred ccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCC-CcEEEccCccCCCCCcccccCCCc-
Q 045571 70 FNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTY-LQILSLSFNDFSGAIPKDIGNLTK- 147 (260)
Q Consensus 70 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~- 147 (260)
.++++|+.|++++|.+. .++ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..|..+...+.
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 88999999999999887 666 4557888888888888877 66666777777 777777777766 44444433321
Q ss_pred -ccEEEcCCccccc----------------------------cccc-cccCCccccEEEccCCcCcCCCccccc------
Q 045571 148 -LMELYLGRNRLQG----------------------------EIPR-EFGSLAELELMSLRESNLQGGIPQELG------ 191 (260)
Q Consensus 148 -L~~L~l~~~~~~~----------------------------~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~------ 191 (260)
|+.|++++|.+.+ .+|. .+..+++|+.|++++|.+....+..+.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 4444444443322 1221 222344555555555555422222221
Q ss_pred -CcCCCcEEEcccCCCCCCcchhcc--CCCcccEEEcCCCccccchhHhhhccccc
Q 045571 192 -NLAKLEMLQLFQNNLTGEIPREFS--NLAKLEMMSLSENNLQGVIINFLQFYSSS 244 (260)
Q Consensus 192 -~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 244 (260)
++++|+.|++++|.++ .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 1125555555555555 3344443 55556666666555555 34444444443
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8.6e-25 Score=170.15 Aligned_cols=203 Identities=26% Similarity=0.335 Sum_probs=179.1
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+.+.++++++.++ .+|..+. +++++|++++|.+....+.+|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678999999998 4565554 689999999999997777789999999999999999987777778899999999999
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
+|.+. .++...+..+++|++|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99998 77777777899999999999999877777889999999999999999866666788999999999999999877
Q ss_pred ccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 162 IPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
.+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 67778889999999999999987777778899999999999999864
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.1e-25 Score=199.02 Aligned_cols=179 Identities=18% Similarity=0.267 Sum_probs=151.6
Q ss_pred CcccEEEecCCccCC-----------------Ccccccc--CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcc-
Q 045571 1 HRVTVLNISRLNLTG-----------------TIPSQLG--NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQ- 60 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 60 (260)
++|++|++++|.+++ .+|..++ .+++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 479999999999997 2788877 99999999999999988999999999999999999998
Q ss_pred cCC-CCchhhccCC-------CccEEeccCCCCCCccch-hhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccC
Q 045571 61 LSG-AFPSFIFNKS-------SLQHLDFSQNTLSGEIPA-NICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSF 131 (260)
Q Consensus 61 l~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 131 (260)
+++ ..|..+..++ +|++|++++|.+. .++. ..+..+++|+.|++++|.+. ..+ .+..+++|+.|++++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence 776 5666565554 9999999999998 7777 34558999999999999998 666 889999999999999
Q ss_pred ccCCCCCcccccCCCc-ccEEEcCCccccccccccccCCc--cccEEEccCCcCcC
Q 045571 132 NDFSGAIPKDIGNLTK-LMELYLGRNRLQGEIPREFGSLA--ELELMSLRESNLQG 184 (260)
Q Consensus 132 ~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~ 184 (260)
|.+. ..|..+..+++ |+.|++++|.+. .+|..+...+ +|+.|++++|.+.+
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 9999 78888999998 999999999988 6666555443 36677776666654
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.1e-25 Score=173.71 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=183.2
Q ss_pred cccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCc
Q 045571 20 QLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99 (260)
Q Consensus 20 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 99 (260)
....+++++.|+++++.+.. ...+..+++|++|++++|.+.+. ..+..+++|++|++++|.+. .++...+..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTT
T ss_pred ccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcC
Confidence 35577899999999998873 34578899999999999988753 46788899999999999988 667766678999
Q ss_pred ceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccC
Q 045571 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRE 179 (260)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (260)
|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999998866666788899999999999999866666778889999999999999866677778889999999999
Q ss_pred CcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccccccccc
Q 045571 180 SNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSACFC 248 (260)
Q Consensus 180 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~~~ 248 (260)
|.+.+..+..+..+++|++|++++|.+.. .+++++.++++.|.+.+.+|.+++.++.....|
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~~~~c 252 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 252 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGGGSBB
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCCCCcc
Confidence 99987777778899999999999998763 467889999999999999999998887655444
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.1e-25 Score=173.20 Aligned_cols=207 Identities=20% Similarity=0.174 Sum_probs=177.6
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|+++++.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 36899999999999777778999999999999999999777778999999999999999998777788999999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCC-CCccccCCCCCcEEEccCccCCCCCcccccCCCccc----EEEcCC
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGG-IPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLM----ELYLGR 155 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 155 (260)
++|.+. .++...+..+++|++|++++|.+... .+..+..+++|+.|++++|++++..+..+..+++++ .|++++
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999987 55554566899999999999998753 478899999999999999999866666666666665 899999
Q ss_pred ccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCC
Q 045571 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGE 209 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 209 (260)
|.+....+..+ ...+|+.|++++|.+.+..+..+..+++|++|++++|++...
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 99985444444 345899999999999877677788999999999999999843
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=192.92 Aligned_cols=178 Identities=21% Similarity=0.218 Sum_probs=141.2
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 36889999999998877888999999999999999998777788999999999999999988777788899999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccC-CCCccccCCCCCcEEEccCccCCCCCcccccCCCcc----cEEEcCC
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHG-GIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKL----MELYLGR 155 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~ 155 (260)
++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.+..+..+..+++| ..+++++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 999887 5555446689999999999998875 357788899999999999998876656666666666 6777777
Q ss_pred ccccccccccccCCccccEEEccCC
Q 045571 156 NRLQGEIPREFGSLAELELMSLRES 180 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (260)
|.+....+..+... +|+.+++.+|
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCceecCHHHhccC-cceeEecccc
Confidence 76664444444332 4555544443
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.5e-25 Score=191.11 Aligned_cols=118 Identities=22% Similarity=0.188 Sum_probs=94.6
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCC-CchhhccCCCccEEe
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGA-FPSFIFNKSSLQHLD 79 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~ 79 (260)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+... .+..+.++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 4789999999999988888899999999999999999977777799999999999999988753 456778888999999
Q ss_pred ccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccc
Q 045571 80 FSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSAL 118 (260)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 118 (260)
+++|.....++...+..+++|++|++++|.+....+..+
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 988874446665555678888888888777654444433
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-26 Score=183.80 Aligned_cols=203 Identities=24% Similarity=0.288 Sum_probs=106.4
Q ss_pred CCCCccEEEccCCcCccccchhh--hcCCCCcEEEccCcccCCCCchhhccC-----CCccEEeccCCCCCCccchhhhc
Q 045571 23 NLSSLQSLNLSFNRLSGSIPSAI--FTMYTLKYVSFRENQLSGAFPSFIFNK-----SSLQHLDFSQNTLSGEIPANICS 95 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~ 95 (260)
.+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+. .++...+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhc
Confidence 45566666666666655455443 5556666666666665544 4444444 55666666666655 34433344
Q ss_pred CCCcceEEecCCCcccCC--CCccc--cCCCCCcEEEccCccCCCC---CcccccCCCcccEEEcCCcccccccc-cccc
Q 045571 96 NLPFLEYISLSKNMFHGG--IPSAL--SKCTYLQILSLSFNDFSGA---IPKDIGNLTKLMELYLGRNRLQGEIP-REFG 167 (260)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 167 (260)
.+++|++|++++|.+... .+..+ ..+++|+.|++++|.+.+. ....+..+++|+.|++++|.+.+..+ ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 556666666666554321 11112 4555666666666655421 11122344556666666665553332 2333
Q ss_pred CCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCcccc
Q 045571 168 SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 168 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 232 (260)
.+++|++|++++|.+. .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 4455666666666655 3343333 5566666666666543 33 5556666666666666553
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9.2e-24 Score=176.63 Aligned_cols=219 Identities=30% Similarity=0.415 Sum_probs=108.4
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +.++++|++|++++|.+....+ +.++++|++|+++
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence 56666666666664333 5666666666666666653322 5566666666666665553322 4555555555555
Q ss_pred CCCCCCccch-------------------hhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCc---
Q 045571 82 QNTLSGEIPA-------------------NICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP--- 139 (260)
Q Consensus 82 ~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--- 139 (260)
+|.+. .++. ..+..+++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+
T Consensus 143 ~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 143 SNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp EEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred CCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccc
Confidence 55443 1111 0022344455555554444311 123344444444444444432211
Q ss_pred -----------------ccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcc
Q 045571 140 -----------------KDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLF 202 (260)
Q Consensus 140 -----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 202 (260)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 123334444444444444432222 4444555555555555543222 4555666666666
Q ss_pred cCCCCCCcchhccCCCcccEEEcCCCccccchh
Q 045571 203 QNNLTGEIPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 203 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
+|.+.+..+ ++.+++|+.|++++|.+.+..+
T Consensus 296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 666654322 5556666666666666665554
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.1e-23 Score=176.11 Aligned_cols=227 Identities=28% Similarity=0.398 Sum_probs=153.3
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCc--------------
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFP-------------- 66 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-------------- 66 (260)
++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.....
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence 356667777766664433 6666666666666666653322 5555555555555554432110
Q ss_pred -----hhhccCCCccEEeccCCCCCC---------------------ccchhhhcCCCcceEEecCCCcccCCCCccccC
Q 045571 67 -----SFIFNKSSLQHLDFSQNTLSG---------------------EIPANICSNLPFLEYISLSKNMFHGGIPSALSK 120 (260)
Q Consensus 67 -----~~~~~l~~L~~L~l~~~~~~~---------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 120 (260)
..+.++++|++|++++|.+.. .... +..+++|+.|++++|.+... ..+..
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 241 (466)
T 1o6v_A 166 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS 241 (466)
T ss_dssp SCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred cccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhc
Confidence 113334444445554444431 1111 22455566666666655422 35667
Q ss_pred CCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEE
Q 045571 121 CTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQ 200 (260)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 200 (260)
+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 7889999999998875433 7888999999999999885433 7789999999999999986533 77899999999
Q ss_pred cccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 201 LFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 201 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+++|.+.+..+ +..+++|+.|++++|.+.+. +.+..+++|+
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 356 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 356 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence 99999997655 78999999999999999987 4566666655
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-25 Score=177.74 Aligned_cols=227 Identities=22% Similarity=0.181 Sum_probs=182.6
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
+..+++++.+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 334444555544444556677899999999999998778899999999999999999875443 888999999999999
Q ss_pred CCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccccc
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIP 163 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 163 (260)
.+. .++ ..++|++|++++|.+....+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 91 ~l~-~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 91 YVQ-ELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEE-EEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred ccc-ccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 886 433 24899999999999874433 346789999999999997667788889999999999999986656
Q ss_pred ccc-cCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccc
Q 045571 164 REF-GSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYS 242 (260)
Q Consensus 164 ~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 242 (260)
..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.+++. +..+..+++|+.|++++|.+.++ |..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI-EKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEE-CTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccch-hhHhhcCC
Confidence 655 4678999999999999754 2 233589999999999999954 55588999999999999999964 55666666
Q ss_pred ccc
Q 045571 243 SSA 245 (260)
Q Consensus 243 ~l~ 245 (260)
+|+
T Consensus 238 ~L~ 240 (317)
T 3o53_A 238 NLE 240 (317)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.9e-23 Score=173.94 Aligned_cols=219 Identities=21% Similarity=0.254 Sum_probs=177.8
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|+++++.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. + +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4789999999999865 4 688999999999999999864 3 78899999999999998864 2 778999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
++|.+. .++ +..+++|++|++++|.+... .+..+++|+.|++++|...+.. .+..+++|+.|++++|.+.+
T Consensus 114 ~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 999987 444 45789999999999998753 3778889999999998544333 46778889999999998874
Q ss_pred cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhc
Q 045571 161 EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQF 240 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 240 (260)
.+ +..+++|+.|++++|.+.+. .+..+++|++|++++|++++ .| ++.+++|+.|++++|.+.+..+..+..
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 33 67788899999999988754 36788899999999999886 34 778889999999999988877666666
Q ss_pred ccccc
Q 045571 241 YSSSA 245 (260)
Q Consensus 241 l~~l~ 245 (260)
+..+.
T Consensus 256 L~~L~ 260 (457)
T 3bz5_A 256 LTTLH 260 (457)
T ss_dssp CCEEE
T ss_pred CCEEe
Confidence 65443
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5e-24 Score=165.97 Aligned_cols=208 Identities=21% Similarity=0.287 Sum_probs=180.7
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|+.|+++++.+... ..+..+++|++|++++|.+.+ ...+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 4689999999998743 357889999999999999985 357889999999999999999777777899999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 117 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 999998 6777767789999999999999986666678899999999999999997766678899999999999999997
Q ss_pred cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcc
Q 045571 161 EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKL 220 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 220 (260)
..+..+..+++|+.|++.+|.+.. .+++++.+++..|.+.+..|..++.++..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 777778899999999999998752 46688999999999998888888776543
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.1e-24 Score=171.33 Aligned_cols=202 Identities=22% Similarity=0.239 Sum_probs=169.2
Q ss_pred CcccEEEecCCccCCCccccc--cCCCCccEEEccCCcCccccchhhhcC-----CCCcEEEccCcccCCCCchhhccCC
Q 045571 1 HRVTVLNISRLNLTGTIPSQL--GNLSSLQSLNLSFNRLSGSIPSAIFTM-----YTLKYVSFRENQLSGAFPSFIFNKS 73 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~ 73 (260)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 478999999999998888776 8999999999999999976 7778777 9999999999999988878999999
Q ss_pred CccEEeccCCCCCCc--cchh-hhcCCCcceEEecCCCcccCC---CCccccCCCCCcEEEccCccCCCCCc-ccccCCC
Q 045571 74 SLQHLDFSQNTLSGE--IPAN-ICSNLPFLEYISLSKNMFHGG---IPSALSKCTYLQILSLSFNDFSGAIP-KDIGNLT 146 (260)
Q Consensus 74 ~L~~L~l~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 146 (260)
+|++|++++|++.+. .+.. .+..+++|++|++++|.+... ....+..+++|+.|++++|.+.+..+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999987533 2222 236789999999999998621 11334577899999999999986553 4566678
Q ss_pred cccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 147 KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
+|+.|++++|.+. ..|..+. ++|++|++++|.+.+. |. +..+++|++|++++|.+++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999998 6666655 8999999999999865 55 8899999999999999974
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.6e-23 Score=161.33 Aligned_cols=200 Identities=25% Similarity=0.201 Sum_probs=172.7
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++++.+++++++++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.++...+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 46889999999998 4555554 789999999999998888899999999999999999875433 268899999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
++|.+. .++..+ ..+++|++|++++|.+....+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+..
T Consensus 85 s~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 999997 666544 579999999999999986666789999999999999999997666778889999999999999986
Q ss_pred cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 161 EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
..+..+..+++|++|++++|.+. .+|..+...++|+.+++++|.+..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 66667788999999999999998 556677777899999999999863
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.2e-24 Score=179.26 Aligned_cols=208 Identities=23% Similarity=0.187 Sum_probs=174.5
Q ss_pred CCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceE
Q 045571 23 NLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 102 (260)
.+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence 34489999999999998888899999999999999999875544 888999999999999887 4442 389999
Q ss_pred EecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccccccccc-CCccccEEEccCCc
Q 045571 103 ISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFG-SLAELELMSLRESN 181 (260)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 181 (260)
|++++|.+....+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999875443 3467899999999999977788888999999999999999876777765 68999999999999
Q ss_pred CcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 182 LQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+.+.. ....+++|++|++++|.+++. |..+..+++|+.|++++|.+.+ +|..+..+++|+
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence 98552 233689999999999999965 4458899999999999999997 455566665544
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=9.4e-23 Score=156.94 Aligned_cols=158 Identities=25% Similarity=0.323 Sum_probs=87.9
Q ss_pred CccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEc
Q 045571 74 SLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYL 153 (260)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 153 (260)
.++.|+++++.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 3444444444443 222222334444444444444444333344455555555555555555444444555566666666
Q ss_pred CCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCcccc
Q 045571 154 GRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 232 (260)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666554444445556666666666666665545556666777777777777765555566667777777777777653
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.8e-23 Score=157.96 Aligned_cols=198 Identities=18% Similarity=0.216 Sum_probs=142.5
Q ss_pred CCccEEEccCCcCccccchhhhcCCCCcEEEccCcc-cCCCCchhhccCCCccEEeccC-CCCCCccchhhhcCCCcceE
Q 045571 25 SSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQ-LSGAFPSFIFNKSSLQHLDFSQ-NTLSGEIPANICSNLPFLEY 102 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~ 102 (260)
+++++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+. .++...+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 478888888888886666678888888888888886 7666666778888888888887 7776 666666667888888
Q ss_pred EecCCCcccCCCCccccCCCCCc---EEEccCc-cCCCCCcccccCCCccc-EEEcCCccccccccccccCCccccEEEc
Q 045571 103 ISLSKNMFHGGIPSALSKCTYLQ---ILSLSFN-DFSGAIPKDIGNLTKLM-ELYLGRNRLQGEIPREFGSLAELELMSL 177 (260)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l 177 (260)
|++++|.+.. .+. +..+++++ .|++++| .+....+..+..+++|+ .|++++|.+....+..+.. ++|++|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 8888887763 343 66666776 8888888 77655555677777888 8888888776333334444 67888888
Q ss_pred cCCc-CcCCCcccccCc-CCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCc
Q 045571 178 RESN-LQGGIPQELGNL-AKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENN 229 (260)
Q Consensus 178 ~~~~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 229 (260)
++|. +....+..+..+ ++|+.|++++|.+++..+. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 8874 765556667777 7788888888777744332 45677777777653
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.4e-23 Score=158.25 Aligned_cols=196 Identities=17% Similarity=0.234 Sum_probs=166.1
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCc-CccccchhhhcCCCCcEEEccC-cccCCCCchhhccCCCccEEe
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGSIPSAIFTMYTLKYVSFRE-NQLSGAFPSFIFNKSSLQHLD 79 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~ 79 (260)
+++.|+++++.+++..+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.+....+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 68999999999998777789999999999999997 8866677899999999999998 888877777889999999999
Q ss_pred ccCCCCCCccchhhhcCCCcce---EEecCCC-cccCCCCccccCCCCCc-EEEccCccCCCCCcccccCCCcccEEEcC
Q 045571 80 FSQNTLSGEIPANICSNLPFLE---YISLSKN-MFHGGIPSALSKCTYLQ-ILSLSFNDFSGAIPKDIGNLTKLMELYLG 154 (260)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 154 (260)
+++|.+. .++. +..+++|+ +|++++| .+....+..+..+++|+ .|++++|++....+..+.. ++|+.|+++
T Consensus 112 l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 9999987 5665 55788887 9999999 88766666788999999 9999999998433344444 899999999
Q ss_pred Ccc-ccccccccccCC-ccccEEEccCCcCcCCCcccccCcCCCcEEEcccC
Q 045571 155 RNR-LQGEIPREFGSL-AELELMSLRESNLQGGIPQELGNLAKLEMLQLFQN 204 (260)
Q Consensus 155 ~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 204 (260)
+|. +....+..+..+ ++|+.|++++|.+... |.. .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 995 886667788888 9999999999999854 333 6788999998775
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=4.4e-22 Score=165.66 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=139.3
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|++|++++|.+++. + ++.+++|++|++++|.+++. + +..+++|++|++++|.+++. + +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEEC
Confidence 4789999999999864 3 78889999999999998854 3 78899999999999988753 3 778889999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
++|.+. .++ +..+++|++|++++|...... .+..+++|+.|++++|.+++ .+ +..+++|+.|++++|.+.+
T Consensus 135 ~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 135 ARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp TTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 999887 343 346788888888887543232 36677788888888887774 33 6667777888887777764
Q ss_pred cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCc
Q 045571 161 EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEI 210 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 210 (260)
. .+..+++|+.|++++|.+.+ +| +..+++|+.|++++|.+++..
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 3 35666777777777777765 33 566777777777777777544
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1e-24 Score=178.25 Aligned_cols=235 Identities=17% Similarity=0.244 Sum_probs=174.3
Q ss_pred CcccEEEecCCccCCC----ccccccCCCCccEEEccCCcCc---cccchhh-------hcCCCCcEEEccCcccCCC--
Q 045571 1 HRVTVLNISRLNLTGT----IPSQLGNLSSLQSLNLSFNRLS---GSIPSAI-------FTMYTLKYVSFRENQLSGA-- 64 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l-------~~l~~L~~L~l~~~~l~~~-- 64 (260)
++|+.|++++|.+.+. ++..+..+++|++|++++|.+. +..|..+ ..+++|++|++++|.+...
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4688999999988754 3344678899999999886443 3344444 6789999999999988763
Q ss_pred --CchhhccCCCccEEeccCCCCCCccchhhh---cCC---------CcceEEecCCCcccCC-CC---ccccCCCCCcE
Q 045571 65 --FPSFIFNKSSLQHLDFSQNTLSGEIPANIC---SNL---------PFLEYISLSKNMFHGG-IP---SALSKCTYLQI 126 (260)
Q Consensus 65 --~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~---------~~L~~L~l~~~~~~~~-~~---~~~~~~~~L~~ 126 (260)
.+..+..+++|++|++++|.+....+..+. ..+ ++|++|++++|.+... .+ ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 455677889999999999988532222221 123 8899999999887622 22 34567789999
Q ss_pred EEccCccCCC-----CCcccccCCCcccEEEcCCcccc----ccccccccCCccccEEEccCCcCcCC----Cccccc--
Q 045571 127 LSLSFNDFSG-----AIPKDIGNLTKLMELYLGRNRLQ----GEIPREFGSLAELELMSLRESNLQGG----IPQELG-- 191 (260)
Q Consensus 127 L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~-- 191 (260)
|++++|.+.+ ..+..+..+++|+.|++++|.+. ..++..+..+++|++|++++|.+.+. ++..+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999998762 23336778889999999999885 45677788888999999999988754 345553
Q ss_pred CcCCCcEEEcccCCCCC----Ccchhc-cCCCcccEEEcCCCccccchh
Q 045571 192 NLAKLEMLQLFQNNLTG----EIPREF-SNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 192 ~~~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~~~~~~~ 235 (260)
.+++|++|++++|.++. .++..+ .++++|+.|++++|++++..+
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 38899999999999986 366666 568999999999999887763
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6.8e-24 Score=171.83 Aligned_cols=234 Identities=19% Similarity=0.172 Sum_probs=172.1
Q ss_pred cccEEEecCCccCCCcc----ccccCCC-CccEEEccCCcCccccchhhhcC-----CCCcEEEccCcccCCCCchhh--
Q 045571 2 RVTVLNISRLNLTGTIP----SQLGNLS-SLQSLNLSFNRLSGSIPSAIFTM-----YTLKYVSFRENQLSGAFPSFI-- 69 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~-- 69 (260)
+|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.++...+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48899999999887666 6777888 89999999999887777777665 899999999998876665543
Q ss_pred --ccC-CCccEEeccCCCCCCccchhh---hcC-CCcceEEecCCCcccCCCCc----cccCCC-CCcEEEccCccCCCC
Q 045571 70 --FNK-SSLQHLDFSQNTLSGEIPANI---CSN-LPFLEYISLSKNMFHGGIPS----ALSKCT-YLQILSLSFNDFSGA 137 (260)
Q Consensus 70 --~~l-~~L~~L~l~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~~~ 137 (260)
..+ ++|++|++++|.+.+.....+ +.. .++|++|++++|.+...... .+...+ +|+.|++++|++++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 344 789999999998874333222 223 35899999999988744332 334454 899999999988755
Q ss_pred Cccc----ccCC-CcccEEEcCCcccccc----ccccccC-CccccEEEccCCcCcCCCc----ccccCcCCCcEEEccc
Q 045571 138 IPKD----IGNL-TKLMELYLGRNRLQGE----IPREFGS-LAELELMSLRESNLQGGIP----QELGNLAKLEMLQLFQ 203 (260)
Q Consensus 138 ~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~ 203 (260)
.+.. +..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 5433 3344 4899999999988742 3444544 4589999999999876433 3456778899999999
Q ss_pred CCCCCC-------cchhccCCCcccEEEcCCCccccchh
Q 045571 204 NNLTGE-------IPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 204 n~l~~~-------~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
|.+... .+..+..+++|+.|++++|.+....+
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 985432 33456778889999999999887643
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.4e-24 Score=174.19 Aligned_cols=201 Identities=20% Similarity=0.205 Sum_probs=90.3
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccc-cchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 44455555555433332 23445555555555554432 34444455555555555555443344444445555555555
Q ss_pred CC-CCCCccchhhhcCCCcceEEecCCC-cccCC-CCccccCCC-CCcEEEccCcc--CC-CCCcccccCCCcccEEEcC
Q 045571 82 QN-TLSGEIPANICSNLPFLEYISLSKN-MFHGG-IPSALSKCT-YLQILSLSFND--FS-GAIPKDIGNLTKLMELYLG 154 (260)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~ 154 (260)
+| .+.+......+..+++|++|++++| .+... .+..+..++ +|+.|++++|. ++ ...+..+..+++|+.|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 55 3332112222334555555555555 43321 223334444 55555555552 22 1222333444555555555
Q ss_pred Ccc-ccccccccccCCccccEEEccCCc-CcCCCcccccCcCCCcEEEcccC
Q 045571 155 RNR-LQGEIPREFGSLAELELMSLRESN-LQGGIPQELGNLAKLEMLQLFQN 204 (260)
Q Consensus 155 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n 204 (260)
+|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 554 333334444445555555555553 11111113444555555555555
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.8e-22 Score=159.80 Aligned_cols=194 Identities=20% Similarity=0.353 Sum_probs=123.0
Q ss_pred cCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcce
Q 045571 22 GNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLE 101 (260)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 101 (260)
..+++|++|+++++.+.. .+ .+..+++|++|++++|.+....+ +..+++|++|++++|.+. .++ .+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS--AIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG--GGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch--hhcCCCCCC
Confidence 345667777777776663 22 46667777777777776664333 666677777777777665 333 234567777
Q ss_pred EEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCc
Q 045571 102 YISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN 181 (260)
Q Consensus 102 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (260)
+|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 777777766532 236666777777777777663322 5666677777777776663222 5666777777777777
Q ss_pred CcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCcccc
Q 045571 182 LQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 232 (260)
+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++..
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 664322 566677777777777776443 26667777777777777655
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=6.7e-22 Score=152.17 Aligned_cols=177 Identities=20% Similarity=0.280 Sum_probs=108.7
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
.+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 456777777776 4444443 5677777777777766666677777777777777777666666666777777777777
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEI 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 162 (260)
|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus 93 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred Cccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 7766 555555555666666666666665444444555566666666666655444444555555666666655555444
Q ss_pred cccccCCccccEEEccCCcCc
Q 045571 163 PREFGSLAELELMSLRESNLQ 183 (260)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~l~ 183 (260)
+..+..+++|+.|++.+|.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 444555555555555555543
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=163.24 Aligned_cols=224 Identities=21% Similarity=0.234 Sum_probs=171.4
Q ss_pred cccEEEecCCccCCCccc---cccCCCCccEEEccCCcCccccchhh--hcCCCCcEEEccCcccCCCCc----hhhccC
Q 045571 2 RVTVLNISRLNLTGTIPS---QLGNLSSLQSLNLSFNRLSGSIPSAI--FTMYTLKYVSFRENQLSGAFP----SFIFNK 72 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~----~~~~~l 72 (260)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 356677777766521111 12234679999999999988888877 889999999999998875433 334568
Q ss_pred CCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCC----CCccccCCCCCcEEEccCccCCCCCcc----cccC
Q 045571 73 SSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGG----IPSALSKCTYLQILSLSFNDFSGAIPK----DIGN 144 (260)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~ 144 (260)
++|++|++++|.+. .++...+..+++|++|++++|.+... ....+..+++|+.|++++|+++ ..+. .+..
T Consensus 145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 89999999999997 66666667899999999999986421 1223467889999999999987 3332 2467
Q ss_pred CCcccEEEcCCccccccccccccCC---ccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCccc
Q 045571 145 LTKLMELYLGRNRLQGEIPREFGSL---AELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLE 221 (260)
Q Consensus 145 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 221 (260)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|++|++++|.+++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7899999999999986666666655 69999999999998 5565553 8999999999999954 33 67889999
Q ss_pred EEEcCCCcccc
Q 045571 222 MMSLSENNLQG 232 (260)
Q Consensus 222 ~L~l~~n~~~~ 232 (260)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=7.5e-22 Score=156.31 Aligned_cols=191 Identities=24% Similarity=0.319 Sum_probs=162.5
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEec
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDF 80 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 80 (260)
++|+.|+++++.+.. .+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 368999999999985 33 58889999999999999985444 89999999999999998854 36889999999999
Q ss_pred cCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccc
Q 045571 81 SQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQG 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (260)
++|.+. .++. +..+++|++|++++|.+....+ +..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+
T Consensus 115 ~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence 999997 4544 5689999999999999874432 78899999999999999854 33 8889999999999999984
Q ss_pred cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 161 EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.++.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 433 778899999999999998554 37899999999999999975
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=2.3e-21 Score=166.20 Aligned_cols=216 Identities=28% Similarity=0.310 Sum_probs=126.4
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|+.|++++|.+++ +|. .+++|++|++++|.++. .|. .+++|++|++++|.+..... .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECC
T ss_pred CCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECC
Confidence 45556666555552 222 34556666666665552 222 44555555555555543211 23444444444
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCC--Cccc--------------cCCCCCcEEEccCccCCCCCccccc--
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGI--PSAL--------------SKCTYLQILSLSFNDFSGAIPKDIG-- 143 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~-- 143 (260)
+|.+. .++. .+++|++|++++|.+.... +..+ ..+++|+.|++++|.+.+ ++..+.
T Consensus 130 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L 203 (622)
T 3g06_A 130 GNQLT-SLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL 203 (622)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred CCCCC-cCCC----CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence 44443 2222 1244555555555443210 0111 112455666666665542 211110
Q ss_pred ---------------CCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 144 ---------------NLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 144 ---------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
.+++|+.|++++|.+.+ ++ ..+++|+.|++++|.+.. +|. .+++|+.|++++|.++
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-
Confidence 12557777777776663 33 345678888888888873 343 5688999999999998
Q ss_pred CcchhccCCCcccEEEcCCCccccchhHhhhccccc
Q 045571 209 EIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSS 244 (260)
Q Consensus 209 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 244 (260)
.+|..+..+++|+.|+|++|++.+.+|+.+..+...
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 567789999999999999999999999988877654
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=8.6e-24 Score=169.56 Aligned_cols=241 Identities=20% Similarity=0.277 Sum_probs=188.3
Q ss_pred ccEEEecCCccCCCccccccCC--CCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCC-CchhhccCCCccEEe
Q 045571 3 VTVLNISRLNLTGTIPSQLGNL--SSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGA-FPSFIFNKSSLQHLD 79 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~ 79 (260)
++.++++++.+. +..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 677888888765 4556666 8999999999998865554 56799999999999988754 566788999999999
Q ss_pred ccCCCCCCccchhhhcCCCcceEEecCCC-cccCC-CCccccCCCCCcEEEccCc-cCCCC-CcccccCCC-cccEEEcC
Q 045571 80 FSQNTLSGEIPANICSNLPFLEYISLSKN-MFHGG-IPSALSKCTYLQILSLSFN-DFSGA-IPKDIGNLT-KLMELYLG 154 (260)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~ 154 (260)
+++|.+.+..+..+ ..+++|++|++++| .+... .+..+..+++|+.|++++| .+++. .+..+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99998874444444 47999999999998 45432 3455678899999999999 87743 455677888 99999999
Q ss_pred Ccc--cc-ccccccccCCccccEEEccCCc-CcCCCcccccCcCCCcEEEcccCC-CCCCcchhccCCCcccEEEcCCCc
Q 045571 155 RNR--LQ-GEIPREFGSLAELELMSLRESN-LQGGIPQELGNLAKLEMLQLFQNN-LTGEIPREFSNLAKLEMMSLSENN 229 (260)
Q Consensus 155 ~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~ 229 (260)
+|. +. ...+..+..+++|++|++++|. +.+..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 994 44 3456677788999999999998 665667788899999999999995 33233336788999999999999
Q ss_pred cccchhHhh-hcccccccccc
Q 045571 230 LQGVIINFL-QFYSSSACFCN 249 (260)
Q Consensus 230 ~~~~~~~~~-~~l~~l~~~~~ 249 (260)
+.......+ ..++.|+..|+
T Consensus 283 i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 283 VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp SCTTCHHHHHHHSTTSEESCC
T ss_pred cCHHHHHHHHhhCcceEEecc
Confidence 665554555 45888876543
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.9e-23 Score=163.37 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=165.6
Q ss_pred CCCccEEEccCCcCccccch---hhhcCCCCcEEEccCcccCCCCchhh--ccCCCccEEeccCCCCCCccc---hhhhc
Q 045571 24 LSSLQSLNLSFNRLSGSIPS---AIFTMYTLKYVSFRENQLSGAFPSFI--FNKSSLQHLDFSQNTLSGEIP---ANICS 95 (260)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---~~~~~ 95 (260)
...++.+.+.++.+...... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+ ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578899998887632211 12345779999999999988887777 889999999999999874332 22223
Q ss_pred CCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCC--C--cccccCCCcccEEEcCCccccccccc----ccc
Q 045571 96 NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGA--I--PKDIGNLTKLMELYLGRNRLQGEIPR----EFG 167 (260)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~ 167 (260)
.+++|++|++++|.+....+..+..+++|+.|++++|++.+. . +..+..+++|++|++++|.+. ..+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 689999999999999877778889999999999999987531 1 223467889999999999986 3332 346
Q ss_pred CCccccEEEccCCcCcCCCcccccCc---CCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccc-hhHhhhcccc
Q 045571 168 SLAELELMSLRESNLQGGIPQELGNL---AKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGV-IINFLQFYSS 243 (260)
Q Consensus 168 ~~~~L~~L~l~~~~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~ 243 (260)
.+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|.++++ .+..+..+..
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 298 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDN 298 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccE
Confidence 77899999999999987767666666 69999999999999 5566553 8999999999999975 2333333333
Q ss_pred c
Q 045571 244 S 244 (260)
Q Consensus 244 l 244 (260)
|
T Consensus 299 L 299 (310)
T 4glp_A 299 L 299 (310)
T ss_dssp E
T ss_pred E
Confidence 3
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.5e-23 Score=167.63 Aligned_cols=233 Identities=17% Similarity=0.128 Sum_probs=180.2
Q ss_pred EEEecCCccCCCccccccCCCCccEEEccCCcCccccc----hhhhcCC-CCcEEEccCcccCCCCchhhccC-----CC
Q 045571 5 VLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP----SAIFTMY-TLKYVSFRENQLSGAFPSFIFNK-----SS 74 (260)
Q Consensus 5 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~l-----~~ 74 (260)
...++++.+++.++..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+....+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36788999998888888887889999999999987666 7778888 99999999999987777666664 89
Q ss_pred ccEEeccCCCCCCccchhh---hcCC-CcceEEecCCCcccCCCCccc----cC-CCCCcEEEccCccCCCCCc----cc
Q 045571 75 LQHLDFSQNTLSGEIPANI---CSNL-PFLEYISLSKNMFHGGIPSAL----SK-CTYLQILSLSFNDFSGAIP----KD 141 (260)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~ 141 (260)
|++|++++|.+.+..+..+ +... ++|++|++++|.+.......+ .. ..+|+.|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999874433322 2344 899999999999875554433 33 3689999999999875433 23
Q ss_pred ccCCC-cccEEEcCCccccccccc----cccCC-ccccEEEccCCcCcCC----CcccccC-cCCCcEEEcccCCCCCCc
Q 045571 142 IGNLT-KLMELYLGRNRLQGEIPR----EFGSL-AELELMSLRESNLQGG----IPQELGN-LAKLEMLQLFQNNLTGEI 210 (260)
Q Consensus 142 ~~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~ 210 (260)
+...+ +|++|++++|.+.+..+. .+... ++|++|++++|.+.+. ++..+.. .++|++|++++|.+....
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34455 899999999999755543 44455 5999999999999863 3344444 469999999999998654
Q ss_pred c----hhccCCCcccEEEcCCCccccchhHh
Q 045571 211 P----REFSNLAKLEMMSLSENNLQGVIINF 237 (260)
Q Consensus 211 ~----~~~~~~~~L~~L~l~~n~~~~~~~~~ 237 (260)
+ ..+..+++|+.|++++|.+.++....
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~ 272 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHH
Confidence 4 34577899999999999966655543
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=5.6e-24 Score=177.68 Aligned_cols=214 Identities=15% Similarity=0.126 Sum_probs=101.6
Q ss_pred cCCCCccEEEccCCcCccccchhhh-----cCCCCcEEEccCcccCCC----CchhhccCCCccEEeccCCCCCCcc---
Q 045571 22 GNLSSLQSLNLSFNRLSGSIPSAIF-----TMYTLKYVSFRENQLSGA----FPSFIFNKSSLQHLDFSQNTLSGEI--- 89 (260)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~--- 89 (260)
..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.. .+..+..+++|++|++++|.+.+..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 3344445555544444432222222 133455555555444432 1233344455555555555443211
Q ss_pred -chhhhcCCCcceEEecCCCcccCC----CCccccCCCCCcEEEccCccCCCCCccccc-----CCCcccEEEcCCcccc
Q 045571 90 -PANICSNLPFLEYISLSKNMFHGG----IPSALSKCTYLQILSLSFNDFSGAIPKDIG-----NLTKLMELYLGRNRLQ 159 (260)
Q Consensus 90 -~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~ 159 (260)
...++..+++|++|++++|.++.. .+..+..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.+.
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 122222345555555555554421 223333455555666655554322111111 1235666666666554
Q ss_pred cc----ccccccCCccccEEEccCCcCcCCCccccc-----CcCCCcEEEcccCCCCC----CcchhccCCCcccEEEcC
Q 045571 160 GE----IPREFGSLAELELMSLRESNLQGGIPQELG-----NLAKLEMLQLFQNNLTG----EIPREFSNLAKLEMMSLS 226 (260)
Q Consensus 160 ~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~ 226 (260)
.. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++. ..+..+..+++|++|+++
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 32 233444556666666666665543222221 14566666666666664 445555666667777777
Q ss_pred CCccccchh
Q 045571 227 ENNLQGVII 235 (260)
Q Consensus 227 ~n~~~~~~~ 235 (260)
+|++++...
T Consensus 407 ~N~i~~~~~ 415 (461)
T 1z7x_W 407 NNCLGDAGI 415 (461)
T ss_dssp SSSCCHHHH
T ss_pred CCCCCHHHH
Confidence 766665543
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=8.6e-24 Score=176.55 Aligned_cols=181 Identities=22% Similarity=0.249 Sum_probs=88.8
Q ss_pred cccEEEecCCccCC----CccccccCCCCccEEEccCCcCccccchhhhc-----CCCCcEEEccCcccCCCC----chh
Q 045571 2 RVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFT-----MYTLKYVSFRENQLSGAF----PSF 68 (260)
Q Consensus 2 ~L~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~----~~~ 68 (260)
+|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46667777766652 34556666677777777777665433333322 345666666666555322 233
Q ss_pred hccCCCccEEeccCCCCCCccchhhh----cCCCcceEEecCCCcccCC----CCccccCCCCCcEEEccCccCCCCC--
Q 045571 69 IFNKSSLQHLDFSQNTLSGEIPANIC----SNLPFLEYISLSKNMFHGG----IPSALSKCTYLQILSLSFNDFSGAI-- 138 (260)
Q Consensus 69 ~~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-- 138 (260)
+..+++|++|++++|.+.+.....+. ...++|++|++++|.+... .+..+..+++|+.|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 44556666666666665422121111 1234566666666655432 1233344455555555555543211
Q ss_pred ---cccccCCCcccEEEcCCcccccc----ccccccCCccccEEEccCCcC
Q 045571 139 ---PKDIGNLTKLMELYLGRNRLQGE----IPREFGSLAELELMSLRESNL 182 (260)
Q Consensus 139 ---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l 182 (260)
+..+..+++|++|++++|.+... ++..+..+++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 11111234455555555544421 233333344444444444444
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=7e-21 Score=164.75 Aligned_cols=208 Identities=24% Similarity=0.333 Sum_probs=174.9
Q ss_pred CCCCccEEEccCCcCcc--ccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcc
Q 045571 23 NLSSLQSLNLSFNRLSG--SIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFL 100 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 100 (260)
.+++|+.+++++|.+.. ..+..+..+.+|+++++..+.... .+..+..+++|+.+++..+......+...+..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccc
Confidence 46788888888887753 345566677888888888776653 344566788899999988876655566667789999
Q ss_pred eEEecCCCcccCCCCccccCCCCCcEEEccCccCC-CCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccC
Q 045571 101 EYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS-GAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRE 179 (260)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (260)
+.++++.+.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 99999999988777788888999999999999754 35677889999999999999999988888999999999999999
Q ss_pred CcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCC-CcccEEEcCCCccc
Q 045571 180 SNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL-AKLEMMSLSENNLQ 231 (260)
Q Consensus 180 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~ 231 (260)
|++.+..+..+..+++|++|++++|++++..|..+..+ ++|+.|+|++|++.
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99998888899999999999999999998889999888 68999999999874
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.2e-23 Score=169.34 Aligned_cols=229 Identities=15% Similarity=0.166 Sum_probs=175.5
Q ss_pred CccccccCCCCccEEEccCCcCccccchh----hhcCCCCcEEEccCcccC---CCCchhh-------ccCCCccEEecc
Q 045571 16 TIPSQLGNLSSLQSLNLSFNRLSGSIPSA----IFTMYTLKYVSFRENQLS---GAFPSFI-------FNKSSLQHLDFS 81 (260)
Q Consensus 16 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~l~---~~~~~~~-------~~l~~L~~L~l~ 81 (260)
.++..+..+++|++|++++|.+....+.. +..+++|++|++++|.+. +..|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45567778899999999999998654444 668999999999997443 3334333 678999999999
Q ss_pred CCCCCCc----cchhhhcCCCcceEEecCCCcccCCCCcc----ccCC---------CCCcEEEccCccCCC-CCc---c
Q 045571 82 QNTLSGE----IPANICSNLPFLEYISLSKNMFHGGIPSA----LSKC---------TYLQILSLSFNDFSG-AIP---K 140 (260)
Q Consensus 82 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~-~~~---~ 140 (260)
+|.+... ++.. +..+++|++|++++|.+....+.. +..+ ++|+.|++++|.+.+ ..+ .
T Consensus 103 ~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9998742 3333 347899999999999886333322 3333 899999999999873 233 3
Q ss_pred cccCCCcccEEEcCCccccc-----cccccccCCccccEEEccCCcCc----CCCcccccCcCCCcEEEcccCCCCCC--
Q 045571 141 DIGNLTKLMELYLGRNRLQG-----EIPREFGSLAELELMSLRESNLQ----GGIPQELGNLAKLEMLQLFQNNLTGE-- 209 (260)
Q Consensus 141 ~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~-- 209 (260)
.+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+. ..++..+..+++|++|++++|.++..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 56678899999999998872 23337778899999999999985 35677788999999999999999854
Q ss_pred --cchhc--cCCCcccEEEcCCCcccc----chhHhh-hcccccc
Q 045571 210 --IPREF--SNLAKLEMMSLSENNLQG----VIINFL-QFYSSSA 245 (260)
Q Consensus 210 --~~~~~--~~~~~L~~L~l~~n~~~~----~~~~~~-~~l~~l~ 245 (260)
++..+ +.+++|+.|+|++|.+++ .++..+ .++++|+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 45556 348999999999999998 467666 5456555
No 88
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=4.5e-21 Score=144.50 Aligned_cols=161 Identities=27% Similarity=0.359 Sum_probs=125.7
Q ss_pred cEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCC
Q 045571 76 QHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR 155 (260)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 155 (260)
+.++.+++.+. .+|..+ .++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34555555555 455433 24677777777777655555677778888888888888766677788888888888888
Q ss_pred ccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchh
Q 045571 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~---- 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI---- 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE----
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC----
Confidence 8887555566778888999999999888777888889999999999999999877778889999999999999988
Q ss_pred Hhhhcccccccccccccce
Q 045571 236 NFLQFYSSSACFCNLYSFA 254 (260)
Q Consensus 236 ~~~~~l~~l~~~~~~~~~~ 254 (260)
|+|++.|+.
T Consensus 166 ----------c~c~l~~l~ 174 (220)
T 2v9t_B 166 ----------CDCHLKWLA 174 (220)
T ss_dssp ----------CSGGGHHHH
T ss_pred ----------CCCccHHHH
Confidence 888877764
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.6e-20 Score=139.26 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=82.3
Q ss_pred EEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCC
Q 045571 5 VLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNT 84 (260)
Q Consensus 5 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 84 (260)
.++.++++++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555555555 233332 3467777777777765555556666777777777766665544555566666666666666
Q ss_pred CCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcc
Q 045571 85 LSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNR 157 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 157 (260)
+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 65 4444444455555555555555543333344455555555555555543333334444455555555443
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=2.5e-19 Score=153.71 Aligned_cols=213 Identities=26% Similarity=0.294 Sum_probs=152.4
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+++.|+++++.++ .+|..+. ++|++|++++|.++. .|. .+++|++|++++|.++.. +. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECc
Confidence 4789999999998 5666655 899999999999984 444 578999999999998843 33 67899999999
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCccc---ccC--------------
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKD---IGN-------------- 144 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~-------------- 144 (260)
+|.+. .++. .+++|+.|++++|.+.. .+.. +++|+.|++++|.+.+ .+.. +..
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~ 179 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPML 179 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCC
T ss_pred CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCccc
Confidence 99987 5555 57889999999999874 3332 3778888888887763 2222 111
Q ss_pred CCcccEEEcCCcccccccccccc-----------------CCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCC
Q 045571 145 LTKLMELYLGRNRLQGEIPREFG-----------------SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 145 ~~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 207 (260)
+++|+.|++++|.+.+ ++..+. .+++|+.|++++|.+.+ +| ..+++|+.|++++|.++
T Consensus 180 ~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 180 PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred CCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 2667777777777663 222111 11456666666666653 23 34567888888888777
Q ss_pred CCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 208 GEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 208 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
. +|. .+++|+.|++++|.++ .+|..+..+++|+
T Consensus 255 ~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 255 S-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp C-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred c-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 4 343 5678888889888888 4466777777765
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=141.47 Aligned_cols=152 Identities=22% Similarity=0.326 Sum_probs=113.5
Q ss_pred cEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcC
Q 045571 76 QHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLG 154 (260)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 154 (260)
+.++++++.+. .+|..+ ...++.|++++|.+....+ ..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35566666555 444433 2334666677666654422 346677778888888887775555677788888888888
Q ss_pred CccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 155 RNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88887666777778888888888888888777788888889999999999988777888888899999999999888
No 92
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=3.7e-21 Score=159.97 Aligned_cols=211 Identities=23% Similarity=0.317 Sum_probs=96.7
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCC-------------cEEEccCcccCCCCchh
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTL-------------KYVSFRENQLSGAFPSF 68 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~l~~~~~~~ 68 (260)
+|++++++++.+ +.+|..++.+++|++|++++|.+.+..|..++++.+| ++|+++++.+++. |.
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~- 88 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE- 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS-
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC-
Confidence 577888888888 5778888888888888888887776677766655543 6666666655431 11
Q ss_pred hccCCCccEEeccCCCCCCccchhh----------------hcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCc
Q 045571 69 IFNKSSLQHLDFSQNTLSGEIPANI----------------CSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFN 132 (260)
Q Consensus 69 ~~~l~~L~~L~l~~~~~~~~~~~~~----------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 132 (260)
-.++|++|++++|.+. .++... ....++|++|++++|.+.. .+ .+..+++|+.|++++|
T Consensus 89 --~~~~L~~L~l~~n~l~-~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 89 --LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp --CCTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred --CcCCCCEEEccCCcCC-ccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 1234444444444443 122110 0011455666666655542 33 3555666666666666
Q ss_pred cCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcch
Q 045571 133 DFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPR 212 (260)
Q Consensus 133 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 212 (260)
++.+ .|.. .++|++|++++|.+.+ .+ .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+. .+|.
T Consensus 164 ~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~ 232 (454)
T 1jl5_A 164 SLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE 232 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred cCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc
Confidence 6552 2322 1355555555555543 33 34555555555555555543 1211 134555555555554 3332
Q ss_pred hccCCCcccEEEcCCCcccc
Q 045571 213 EFSNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 213 ~~~~~~~L~~L~l~~n~~~~ 232 (260)
++.+++|+.|++++|.+.+
T Consensus 233 -~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSS
T ss_pred -cCCCCCCCEEECCCCcCCc
Confidence 5555555555555555554
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=9.1e-20 Score=151.62 Aligned_cols=218 Identities=25% Similarity=0.374 Sum_probs=93.5
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|++|++++|.+++ +|.. .++|++|++++|.+++ .| .+.++++|++|++++|.+.+. +.. ..+|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECc
Confidence 56666776666664 3322 2366666666666653 33 455666666666666655431 111 1345555555
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccc-----------------cCCCCCcEEEccCccCCC--CCccc-
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSAL-----------------SKCTYLQILSLSFNDFSG--AIPKD- 141 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~--~~~~~- 141 (260)
+|.+. .++. +..+++|++|++++|.+.. .+... ...++|+.|++++|.+.+ ..+..
T Consensus 224 ~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L 299 (454)
T 1jl5_A 224 NNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299 (454)
T ss_dssp SSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTC
T ss_pred CCcCC-cccc--cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcC
Confidence 55544 3332 2344555555555544432 11100 011334444444444432 11100
Q ss_pred ------------ccCC-CcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 142 ------------IGNL-TKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 142 ------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
+... ++|+.|++++|.+.+ .+.. +++|+.|++++|.+.. +|. .+++|++|++++|.+.+
T Consensus 300 ~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS
T ss_pred CEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCc
Confidence 0011 245555555555442 2221 3556666666666653 333 34667777777777765
Q ss_pred --CcchhccCC-------------CcccEEEcCCCcccc--chhHhhhcc
Q 045571 209 --EIPREFSNL-------------AKLEMMSLSENNLQG--VIINFLQFY 241 (260)
Q Consensus 209 --~~~~~~~~~-------------~~L~~L~l~~n~~~~--~~~~~~~~l 241 (260)
..|..+..+ ++|+.|++++|.+++ .+|+++..+
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CCCCCTTCCEEECCC-----------------------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 455555555 667777777777765 445554444
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.3e-20 Score=152.49 Aligned_cols=176 Identities=24% Similarity=0.235 Sum_probs=117.9
Q ss_pred cEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhc-CCCcceEEecCCCcccCCCCccccCCCCCcEEEcc
Q 045571 52 KYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICS-NLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLS 130 (260)
Q Consensus 52 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 130 (260)
+.++.+++.++. .|..+ ...++.|++++|.+. .++...+. .+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 345555554442 22222 123555666666655 44444444 56666666666666654445566667777777777
Q ss_pred CccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccc---cCcCCCcEEEcccCCCC
Q 045571 131 FNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQEL---GNLAKLEMLQLFQNNLT 207 (260)
Q Consensus 131 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~n~l~ 207 (260)
+|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+ ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777765555567777778888888877776666777777888888888888875544455 56889999999999998
Q ss_pred CCcchhccCCCc--ccEEEcCCCccc
Q 045571 208 GEIPREFSNLAK--LEMMSLSENNLQ 231 (260)
Q Consensus 208 ~~~~~~~~~~~~--L~~L~l~~n~~~ 231 (260)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 776677878887 488999999998
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=6.6e-20 Score=137.01 Aligned_cols=180 Identities=23% Similarity=0.275 Sum_probs=91.4
Q ss_pred EEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCC
Q 045571 29 SLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKN 108 (260)
Q Consensus 29 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 108 (260)
.++.+++.++ ..|..+ .+++++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence 4455555554 223221 245666666666665444444555666666666666555 444444444555555555555
Q ss_pred cccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcc
Q 045571 109 MFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQ 188 (260)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 188 (260)
.+....+..+..++ +|++|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus 87 ~l~~~~~~~~~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 87 QLQSLPNGVFDKLT------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCT------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCccCHhHhcCcc------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 54433333344444 445555544444433333344445555555555555444344
Q ss_pred cccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccc
Q 045571 189 ELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSS 243 (260)
Q Consensus 189 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 243 (260)
.+..+++|++|++++|.+. +.+++++.|+++.|.+.+.+|++++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4455555555555555443 23345555566666666666655555544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=6.7e-20 Score=147.68 Aligned_cols=202 Identities=17% Similarity=0.151 Sum_probs=106.9
Q ss_pred EEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCC-CchhhccCCCccE-EeccC
Q 045571 5 VLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGA-FPSFIFNKSSLQH-LDFSQ 82 (260)
Q Consensus 5 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~-L~l~~ 82 (260)
.++.++++++ .+|..+. +++++|++++|+++...+.+|.++++|++|++++|.+.+. .+..|.+++++.+ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455555565 3444442 4566666666666644445566666666666666665332 2344555665554 33444
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccC-ccCCCCCcccccCCC-cccEEEcCCccccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSF-NDFSGAIPKDIGNLT-KLMELYLGRNRLQG 160 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 160 (260)
+++. .++...+..+++|++|++++|.+....+..+.....+..+++.+ +.+....+..+..+. .++.|++++|.+..
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5555 55555555666666666666666543333344444555555544 233322223344332 45566666666653
Q ss_pred cccccccCCccccEEEccC-CcCcCCCcccccCcCCCcEEEcccCCCCCCcc
Q 045571 161 EIPREFGSLAELELMSLRE-SNLQGGIPQELGNLAKLEMLQLFQNNLTGEIP 211 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 211 (260)
..+..+ ...+|+++++.+ |.+....+.+|..+++|++|++++|+++...+
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 222222 334566666653 34443334455666666666666666664433
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.5e-19 Score=153.35 Aligned_cols=189 Identities=22% Similarity=0.317 Sum_probs=140.5
Q ss_pred CccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEec
Q 045571 26 SLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISL 105 (260)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 105 (260)
+++.|+++++.+++ .|..+ .++|++|++++|.++ ..| ..+++|++|++++|.+. .++. +. . +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~-~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP-A--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC-T--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh-c--CCCEEEC
Confidence 78888888888875 55544 367888888888887 344 34678888888888887 4665 32 2 8888888
Q ss_pred CCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCC
Q 045571 106 SKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGG 185 (260)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 185 (260)
++|.+.. .+. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+.+ +|. +. ++|+.|++++|.+. .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 8888864 343 56788888888888874 444 45788889998888874 555 44 78889999998887 4
Q ss_pred CcccccCcCCC-------cEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccc
Q 045571 186 IPQELGNLAKL-------EMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSS 243 (260)
Q Consensus 186 ~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 243 (260)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|++.+.+|..+..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 444 443 66 89999999998 45666767899999999999999888888777643
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1e-19 Score=146.62 Aligned_cols=238 Identities=17% Similarity=0.107 Sum_probs=176.0
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCcCcccc-chhhhcCCCCcE-EEccCcccCCCCchhhccCCCccEE
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI-PSAIFTMYTLKY-VSFRENQLSGAFPSFIFNKSSLQHL 78 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~-L~l~~~~l~~~~~~~~~~l~~L~~L 78 (260)
++++.|++++|.|++..+.+|..+++|++|++++|.+.+.. +.+|.+++++++ +.+..|++....+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 36899999999999777778999999999999999986544 457788988876 4556688887778889999999999
Q ss_pred eccCCCCCCccchhhhcCCCcceEEecCC-CcccCCCCccccCCC-CCcEEEccCccCCCCCcccccCCCcccEEEcCC-
Q 045571 79 DFSQNTLSGEIPANICSNLPFLEYISLSK-NMFHGGIPSALSKCT-YLQILSLSFNDFSGAIPKDIGNLTKLMELYLGR- 155 (260)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~- 155 (260)
++++|.+. .++...+....++..+++.+ +.+.......+..+. .++.|++++|+++. ++.......+++.+++.+
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence 99999997 66665555677788888865 445434444555554 68999999999984 444444456899999985
Q ss_pred ccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchh
Q 045571 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
|.+....+.+|..+++|+.|++++|.+....+.. +.+|+.|.+.++.-...+|. +..+++|+.+++.++.-.....
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~c~~~~ 263 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSHCCAFA 263 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHHHHHHH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCccccchh
Confidence 5666555567889999999999999998554444 45666776666544335563 7889999999998755433333
Q ss_pred Hhhhccccc
Q 045571 236 NFLQFYSSS 244 (260)
Q Consensus 236 ~~~~~l~~l 244 (260)
.+......+
T Consensus 264 ~~~~~~~~~ 272 (350)
T 4ay9_X 264 NWRRQISEL 272 (350)
T ss_dssp HSCCCCCCC
T ss_pred hhhhhcccc
Confidence 333333333
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=4.1e-19 Score=139.39 Aligned_cols=172 Identities=22% Similarity=0.308 Sum_probs=102.0
Q ss_pred cCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcce
Q 045571 22 GNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLE 101 (260)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 101 (260)
..+++|+.|+++++.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence 3456667777776666532 235666677777777666664333 566666777777666665 3332 34566666
Q ss_pred EEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCc
Q 045571 102 YISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN 181 (260)
Q Consensus 102 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (260)
+|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666666432 3455666666666666666533 345566666666666666653322 5556666666666666
Q ss_pred CcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 182 LQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
+.+. + .+..+++|+.|++++|.+..
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 6532 2 35566666666666666553
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=7.2e-19 Score=132.41 Aligned_cols=152 Identities=22% Similarity=0.280 Sum_probs=121.3
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
+.++.++++++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45777788777 4555444 68899999999988766778888899999999999888777788888888999999988
Q ss_pred CCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 887 777777777888888888888887666777788888888888888887666666777778888888887664
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.5e-19 Score=140.60 Aligned_cols=190 Identities=23% Similarity=0.327 Sum_probs=131.3
Q ss_pred EEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCC
Q 045571 29 SLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKN 108 (260)
Q Consensus 29 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 108 (260)
.+.+....+.+. ..+..+++|++|++++|.+... ..+..+++|++|++++|.+. .++. +..+++|+.|++++|
T Consensus 28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred HHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCC
Confidence 334555555432 2235677788888888777643 23667788888888888776 4444 457788888888887
Q ss_pred cccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcc
Q 045571 109 MFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQ 188 (260)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 188 (260)
.+.. ...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 101 ~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 7753 23467778888888888877743 4566777888888888877643 456677788888888887775433
Q ss_pred cccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchh
Q 045571 189 ELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 189 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
+..+++|++|++++|.++.. + .+..+++|+.|++++|++.....
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 67778888888888887743 3 37778888888888887765443
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=8.1e-19 Score=132.97 Aligned_cols=152 Identities=24% Similarity=0.239 Sum_probs=108.3
Q ss_pred ccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcC
Q 045571 75 LQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLG 154 (260)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 154 (260)
-+.++.+++.+. .++..+ .++|++|++++|.+....+..+..+++|+.|++++|++....+..+..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 345555555554 455433 2567777777777765556666777777777777777765444556777778888888
Q ss_pred CccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 155 RNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
+|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 87777555566677778888888888877 55666777888888888888888666667778888888888888877
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.7e-18 Score=146.85 Aligned_cols=187 Identities=28% Similarity=0.439 Sum_probs=153.2
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|+.|+++++.+++ +|..+. ++|++|++++|.++ ..| ..+++|++|++++|.+++ .|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 68999999999986 555543 78999999999998 455 457899999999999986 444 544 99999999
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGE 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (260)
+|.+. .++. .+++|+.|++++|.+.. .+. .+++|+.|++++|.+++ .|. +. ++|+.|++++|.+. .
T Consensus 129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 99998 4665 58999999999999874 443 56899999999999985 555 55 89999999999998 5
Q ss_pred ccccccCCccc-------cEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCC
Q 045571 162 IPREFGSLAEL-------ELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNL 217 (260)
Q Consensus 162 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 217 (260)
+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 555 443 67 99999999998 567777779999999999999998878776554
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=9.4e-19 Score=149.86 Aligned_cols=172 Identities=22% Similarity=0.313 Sum_probs=101.8
Q ss_pred cCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcce
Q 045571 22 GNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLE 101 (260)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 101 (260)
..+++|+.|+++++.+... +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhccCCCCC
Confidence 4556666666666666532 245666666677766666654333 556666666666666665 333 233566666
Q ss_pred EEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCc
Q 045571 102 YISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN 181 (260)
Q Consensus 102 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (260)
.|++++|.+.. ...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 66666666542 23455666666666666666533 345566666666666666653333 5556666666666666
Q ss_pred CcCCCcccccCcCCCcEEEcccCCCCC
Q 045571 182 LQGGIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
+.+. ..+..+++|+.|++++|.+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 6533 245566666666666666553
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=7.9e-19 Score=142.01 Aligned_cols=176 Identities=27% Similarity=0.237 Sum_probs=136.5
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhh-cCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIF-TMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
+.+++++++++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46778888887 4555543 5688899999998876677776 889999999999988877777788889999999999
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccc---cCCCcccEEEcCCcccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDI---GNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 159 (260)
|.+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9887 6777777788899999999988876667788888899999999998885443444 45788889999998887
Q ss_pred ccccccccCCcc--ccEEEccCCcCc
Q 045571 160 GEIPREFGSLAE--LELMSLRESNLQ 183 (260)
Q Consensus 160 ~~~~~~~~~~~~--L~~L~l~~~~l~ 183 (260)
...+..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 555556666665 477888887664
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=6.8e-19 Score=150.75 Aligned_cols=198 Identities=22% Similarity=0.323 Sum_probs=162.6
Q ss_pred CCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEe
Q 045571 25 SSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYIS 104 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 104 (260)
..+..+.+..+.+.+..+ +..+++|+.|+++++.+... ..+..+++|+.|++++|.+. .++. +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEE
Confidence 345556667776664333 57889999999999998744 25889999999999999998 4544 55899999999
Q ss_pred cCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcC
Q 045571 105 LSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQG 184 (260)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 184 (260)
+++|.+.. ...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 94 Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999863 33688999999999999999853 4688899999999999999854 678889999999999999986
Q ss_pred CCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhh
Q 045571 185 GIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQ 239 (260)
Q Consensus 185 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 239 (260)
..+ +..+++|+.|++++|.+.+. + .+..+++|+.|+|++|++.......+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCcccccc
Confidence 655 88999999999999999854 3 588999999999999998876444333
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=3e-18 Score=129.03 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=110.7
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccc-hhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
+.++++++.+++ +|..+. +.+++|++++|.++...+ ..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467778887774 454443 456788888888875533 4567888888888888887766666777888888888888
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8876 566665667777888888777777666667777777777777777777665667777777777777777665
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=7.5e-18 Score=127.66 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=83.7
Q ss_pred EEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCC
Q 045571 5 VLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNT 84 (260)
Q Consensus 5 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 84 (260)
.++.+++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4555555555 3343332 566666666666665555566666666666666666654444455566666666666666
Q ss_pred CCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc
Q 045571 85 LSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (260)
+. .++...+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 100 l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55 444444445556666666655554 34444555555555555555555333344555555555555555443
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=3.2e-19 Score=142.51 Aligned_cols=194 Identities=14% Similarity=0.062 Sum_probs=129.0
Q ss_pred CCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcc----cCCCCccccCCCC
Q 045571 48 MYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMF----HGGIPSALSKCTY 123 (260)
Q Consensus 48 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~ 123 (260)
+++|+.+.+.+ .+......+|..+.+|+.+++..+.+. .++...|..+.++..+....... .......+..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66666666665 555455556666666666666666655 55555555555555555443211 0111122333333
Q ss_pred Cc-EEEccCcc------------------------CCCCCcccc-cCCCcccEEEcCCccccccccccccCCccccEEEc
Q 045571 124 LQ-ILSLSFND------------------------FSGAIPKDI-GNLTKLMELYLGRNRLQGEIPREFGSLAELELMSL 177 (260)
Q Consensus 124 L~-~L~l~~~~------------------------~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 177 (260)
++ .+.+.... +.......+ ..+++|+.+++++|.+......+|..+.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 33 22221110 000000000 13688999999999888777788999999999999
Q ss_pred cCCcCcCCCcccccCcCCCc-EEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 178 RESNLQGGIPQELGNLAKLE-MLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 178 ~~~~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
.++ +....+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.+..+...+|.++.+|+
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 998 6667778999999999 999988 77767888999999999999999999999999999998886
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.2e-17 Score=123.68 Aligned_cols=154 Identities=15% Similarity=0.204 Sum_probs=114.9
Q ss_pred ccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcc
Q 045571 21 LGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFL 100 (260)
Q Consensus 21 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 100 (260)
.+.+++|++|+++++.+. ..+ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+....+.. +..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh-hcCCCCC
Confidence 356678888888888887 334 57888888888888886552 346777888888888888887333433 3478888
Q ss_pred eEEecCCCcccCCCCccccCCCCCcEEEccCcc-CCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccC
Q 045571 101 EYISLSKNMFHGGIPSALSKCTYLQILSLSFND-FSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRE 179 (260)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (260)
++|++++|.+....+..+..+++|+.|++++|. +. ..+ .+..+++|+.|++++|.+.+ .+ .+..+++|++|++.+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 888888888876566777888888999988887 65 344 57788889999999888874 33 667788899999988
Q ss_pred CcCc
Q 045571 180 SNLQ 183 (260)
Q Consensus 180 ~~l~ 183 (260)
|.+.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 8875
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.4e-18 Score=138.91 Aligned_cols=221 Identities=14% Similarity=0.070 Sum_probs=167.0
Q ss_pred CcccEEEecCCccC--------------------CCccccccC--------CCCccEEEccCCcCccccchhhhcCCCCc
Q 045571 1 HRVTVLNISRLNLT--------------------GTIPSQLGN--------LSSLQSLNLSFNRLSGSIPSAIFTMYTLK 52 (260)
Q Consensus 1 ~~L~~l~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 52 (260)
++|++|++++|.+. .+.+..|.. +++|+.++++. .++...+.+|.++++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 47899999999887 233456677 99999999999 88877888999999999
Q ss_pred EEEccCcccCCCCchhhccCCCccEEeccCCCC---CCccchhhhcCCCcce-EEecCCCc-------------------
Q 045571 53 YVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTL---SGEIPANICSNLPFLE-YISLSKNM------------------- 109 (260)
Q Consensus 53 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~L~-~L~l~~~~------------------- 109 (260)
.+++.++.+....+..|..+.++..+....... ...+....+..+..|+ .+.+....
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 999999988777778888887787777655221 0122223333444444 33332111
Q ss_pred ------ccCCCCccc-cCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCcccc-EEEccCCc
Q 045571 110 ------FHGGIPSAL-SKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELE-LMSLRESN 181 (260)
Q Consensus 110 ------~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~ 181 (260)
.. .....+ ..+++|+.+++.+|+++.+...+|.++.+|+.+++..| +......+|..+.+|+ .+++.. .
T Consensus 208 ~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 208 TIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 00 000001 13789999999999888666778999999999999998 6667788999999999 999998 6
Q ss_pred CcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEc
Q 045571 182 LQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSL 225 (260)
Q Consensus 182 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 225 (260)
+....+.+|.+|++|+.+++.+|.++...+.+|.++++|+.+..
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 66677789999999999999999999888889999999998853
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=123.50 Aligned_cols=138 Identities=22% Similarity=0.355 Sum_probs=107.2
Q ss_pred eEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCC
Q 045571 101 EYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRES 180 (260)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (260)
+.++++++.+. ..|..+ .++++.|++++|.++ ..|..+..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 333322 246788888888877 55677778888888888888888666677888888888888888
Q ss_pred cCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccccccccccceee
Q 045571 181 NLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSACFCNLYSFACS 256 (260)
Q Consensus 181 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (260)
.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|++. |+|++.|+..|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~--------------C~c~l~~l~~~ 150 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY--------------CDCNMQWLSDW 150 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE--------------CSGGGHHHHHH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee--------------cCCcCHHHHHH
Confidence 888777778888999999999999999777777889999999999999998 88887776443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.3e-18 Score=124.77 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEE
Q 045571 73 SSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELY 152 (260)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 152 (260)
++|++|+++++.+. .++ . +..+++|++|++++|.+. ....+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34444444444443 222 1 223445555555544332 122455566666666666666544455666666777777
Q ss_pred cCCccccccccccccCCccccEEEccCCc-CcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 153 LGRNRLQGEIPREFGSLAELELMSLRESN-LQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
+++|.+.+..+..+..+++|++|++++|. +. ..+ .+..+++|++|++++|.+... + .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 77776665556666667777777777776 44 333 566777788888888877742 3 5677788888888887765
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.3e-17 Score=120.73 Aligned_cols=109 Identities=25% Similarity=0.387 Sum_probs=69.4
Q ss_pred CCcEEEccCccCCCCCcc-cccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEc
Q 045571 123 YLQILSLSFNDFSGAIPK-DIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQL 201 (260)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 201 (260)
+++.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555666666655533332 2555666666666666666555556666666666666666666555555666677777777
Q ss_pred ccCCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 202 FQNNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 202 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
++|.+++..|..+..+++|+.|++++|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 777777666666777777777777777766
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.2e-17 Score=129.07 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=89.5
Q ss_pred CCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEe
Q 045571 25 SSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYIS 104 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 104 (260)
.++..++++++.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+. .++. +..+++|++|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEE
Confidence 34444555555554222 345555556666655555422 2 3455555666666555554 3333 33555666666
Q ss_pred cCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcC
Q 045571 105 LSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQG 184 (260)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 184 (260)
+++|.+... +. +.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 666555422 11 122 5566666666665532 2355566666666666665532 2 45555666666666666654
Q ss_pred CCcccccCcCCCcEEEcccCCCCC
Q 045571 185 GIPQELGNLAKLEMLQLFQNNLTG 208 (260)
Q Consensus 185 ~~~~~~~~~~~L~~L~l~~n~l~~ 208 (260)
. ..+..+++|+.|++++|.+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 3 445566666666666666653
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.1e-17 Score=127.73 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=134.3
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
..++++++.+++.. .+..+++|++|++++|.++. .+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 34556777777433 57788999999999999884 34 68889999999999999886544 888999999999999
Q ss_pred CCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccccc
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIP 163 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 163 (260)
.+. .++... . ++|+.|++++|.+... ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+.+.
T Consensus 96 ~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 96 RLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred ccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 987 454432 3 8899999999988743 4588899999999999999854 3 678889999999999998855
Q ss_pred ccccCCccccEEEccCCcCcCC
Q 045571 164 REFGSLAELELMSLRESNLQGG 185 (260)
Q Consensus 164 ~~~~~~~~L~~L~l~~~~l~~~ 185 (260)
..+..+++|+.|++++|.+...
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 6677889999999999988744
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=3.3e-19 Score=153.27 Aligned_cols=220 Identities=12% Similarity=0.072 Sum_probs=126.5
Q ss_pred CccccccCCCCccEEEccCCcCccccc-hhhhcCCCCcEEEccCcccCC-CCchhhccCCCccEEeccC-----------
Q 045571 16 TIPSQLGNLSSLQSLNLSFNRLSGSIP-SAIFTMYTLKYVSFRENQLSG-AFPSFIFNKSSLQHLDFSQ----------- 82 (260)
Q Consensus 16 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~----------- 82 (260)
..+..+..+++|++|++++|.++.... ..+..+++|++|++.+ .+.. ..+.....+++|++|++++
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 344455556667777777666543322 2345666777776662 2221 1222234566777777763
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccC-CCCCcEEEcc----CccCCCC-----CcccccCCCcccEEE
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSK-CTYLQILSLS----FNDFSGA-----IPKDIGNLTKLMELY 152 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~ 152 (260)
+.+.+.....+...+++|++|++..+.++......+.. +++|+.|++. .+.+++. .+..+..+++|+.|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 33432222333345677777777555554333333333 6677777775 3444421 112244577788888
Q ss_pred cCCcc--ccccccccc-cCCccccEEEccCCcCcC-CCcccccCcCCCcEEEcccCCCCCC-cchhccCCCcccEEEcCC
Q 045571 153 LGRNR--LQGEIPREF-GSLAELELMSLRESNLQG-GIPQELGNLAKLEMLQLFQNNLTGE-IPREFSNLAKLEMMSLSE 227 (260)
Q Consensus 153 l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~ 227 (260)
++.|. +.+.....+ ..+++|++|++++|.+.+ ..+..+..+++|++|++++|.++.. .+.....+++|+.|++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 86543 332222222 346778888888887764 2344556778888888888887533 334445678888888888
Q ss_pred CccccchhH
Q 045571 228 NNLQGVIIN 236 (260)
Q Consensus 228 n~~~~~~~~ 236 (260)
|.+++...+
T Consensus 523 n~it~~~~~ 531 (592)
T 3ogk_B 523 YRASMTGQD 531 (592)
T ss_dssp CBCCTTCTT
T ss_pred CcCCHHHHH
Confidence 887765433
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=4.8e-18 Score=146.06 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=53.6
Q ss_pred ccEEEecCCc-cCC-CccccccCCCCccEEEccCCcCccc----cchhhhcCCCCcEEEccCcccCCC----CchhhccC
Q 045571 3 VTVLNISRLN-LTG-TIPSQLGNLSSLQSLNLSFNRLSGS----IPSAIFTMYTLKYVSFRENQLSGA----FPSFIFNK 72 (260)
Q Consensus 3 L~~l~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~----~~~~~~~l 72 (260)
|++|++++|. +.. ..+.....+++|++|++++|.+++. .+..+..+++|++|+++++.+.+. .+..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6677776664 211 1122223566777777777765533 222334566677777766665422 12233455
Q ss_pred CCccEEeccCCCCCCccchhhhcCCCcceEEecC
Q 045571 73 SSLQHLDFSQNTLSGEIPANICSNLPFLEYISLS 106 (260)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 106 (260)
++|++|+++++.+. .++ ..+..+++|+.|.++
T Consensus 220 ~~L~~L~L~~~~~~-~l~-~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELV-GFFKAAANLEEFCGG 251 (592)
T ss_dssp TTCCEEECSSCBGG-GGH-HHHHHCTTCCEEEEC
T ss_pred CCCcEEeccCccHH-HHH-HHHhhhhHHHhhccc
Confidence 66666666666554 233 223345555555554
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.6e-19 Score=152.40 Aligned_cols=190 Identities=19% Similarity=0.205 Sum_probs=117.4
Q ss_pred cCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcc-------------cCCCCchhhccCCCccEEe-ccCCCCCC
Q 045571 22 GNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQ-------------LSGAFPSFIFNKSSLQHLD-FSQNTLSG 87 (260)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------l~~~~~~~~~~l~~L~~L~-l~~~~~~~ 87 (260)
...++|+.|++++|.++ ..|..++++++|+.|++.++. ..+..+..+..+++|+.|+ +..+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 34566667777777765 556667777777777765442 1122223333334444333 222111
Q ss_pred ccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccccccccccc
Q 045571 88 EIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFG 167 (260)
Q Consensus 88 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 167 (260)
..|+.+.+.++.+... ....|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..+.
T Consensus 423 ----------~~L~~l~l~~n~i~~l------~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 423 ----------DDLRSKFLLENSVLKM------EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHH------HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------chhhhhhhhccccccc------CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 1111111122222100 01247778888887774 454 777778888888888777 6677777
Q ss_pred CCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCc-chhccCCCcccEEEcCCCccccchh
Q 045571 168 SLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEI-PREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 168 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
.+++|+.|++++|.+.+ +| .+..+++|++|++++|.+++.. |..++.+++|+.|++++|++++.++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 78888888888888774 45 6777888888888888887665 7778888888888888888876654
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1.2e-16 Score=115.16 Aligned_cols=134 Identities=21% Similarity=0.198 Sum_probs=95.8
Q ss_pred CCCCccEEEccCCcCc-cccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcce
Q 045571 23 NLSSLQSLNLSFNRLS-GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLE 101 (260)
Q Consensus 23 ~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 101 (260)
..+++++|++++|.++ +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+...+ ...+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL-DMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCC-CHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHH-HHHHhhCCCCC
Confidence 3467888888888776 45666677778888888888877654 56677788888888888776333 33444578888
Q ss_pred EEecCCCcccCCCC-ccccCCCCCcEEEccCccCCCCCc---ccccCCCcccEEEcCCcccc
Q 045571 102 YISLSKNMFHGGIP-SALSKCTYLQILSLSFNDFSGAIP---KDIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 102 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 159 (260)
+|++++|.+..... ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887764322 567778888888888888874433 36777888888888888765
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=4.7e-16 Score=127.03 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=139.3
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
|+.+.+.++ ++.+-..+|.. .+|+.+.+.+ .+......+|.++++|+.+++.++.+.......|. ..+|+.+.+..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred ccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 344444333 33333344444 2466666654 44444555666666666666666655544444444 45666666653
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc---
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ--- 159 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--- 159 (260)
+ +. .+....|..+++|+.+.+..+ +......+|.. .+|+.+.+.. .+..+...+|.++++|+.+++.++.+.
T Consensus 213 ~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 213 T-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp T-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred c-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 3 33 555666666667777776653 22233344544 5666666633 344344567777888888888776543
Q ss_pred --ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHh
Q 045571 160 --GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINF 237 (260)
Q Consensus 160 --~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 237 (260)
.....+|..+++|+.+.+.. .+......+|.+|++|+.+.+..+ ++.....+|.++ +|+.+.+.+|.+..+...+
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 34456777788888888874 355455677888888888888554 555667778888 8888888888777766666
Q ss_pred hhccc
Q 045571 238 LQFYS 242 (260)
Q Consensus 238 ~~~l~ 242 (260)
+..++
T Consensus 365 F~~~~ 369 (401)
T 4fdw_A 365 WYGFP 369 (401)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 66654
No 122
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=5.4e-18 Score=145.78 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=52.7
Q ss_pred cccEEEecCCccCCCcccccc-CCCCccEEEccCC-cCccc-cchhhhcCCCCcEEEccCcccCCCCchhhc----cCCC
Q 045571 2 RVTVLNISRLNLTGTIPSQLG-NLSSLQSLNLSFN-RLSGS-IPSAIFTMYTLKYVSFRENQLSGAFPSFIF----NKSS 74 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~----~l~~ 74 (260)
+|+.|+++++.+++.....+. .+++|++|++++| .++.. .+..+..+++|++|++++|.+++..+..+. .+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 455666666655544344443 4566666666665 33322 222333566666666666655433332222 3446
Q ss_pred ccEEeccCCC--CCCccchhhhcCCCcceEEecCCC
Q 045571 75 LQHLDFSQNT--LSGEIPANICSNLPFLEYISLSKN 108 (260)
Q Consensus 75 L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~ 108 (260)
|++|+++++. +.......+...+++|++|++.+|
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6666666654 211111222223566666666655
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.1e-18 Score=148.47 Aligned_cols=201 Identities=21% Similarity=0.180 Sum_probs=144.1
Q ss_pred CcccEEEecCCccCCCccccccCCCCccEEEccCCc-------------CccccchhhhcCCCCcEEE-ccCcccCCCCc
Q 045571 1 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNR-------------LSGSIPSAIFTMYTLKYVS-FRENQLSGAFP 66 (260)
Q Consensus 1 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~l~~~~~ 66 (260)
++|+.|++++|.++ .+|..++.+++|++|+++++. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~---- 423 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---- 423 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH----
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc----
Confidence 35677888999887 789999999999999997775 4455677788888898887 5544332
Q ss_pred hhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCC
Q 045571 67 SFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLT 146 (260)
Q Consensus 67 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 146 (260)
.|+.+.+.++.+. .++. ..|+.|++++|.++. .+. +..+++|+.|++++|.++ .+|..+..++
T Consensus 424 -------~L~~l~l~~n~i~-~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 -------DLRSKFLLENSVL-KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp -------HHHHHHHHHHHHH-HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred -------hhhhhhhhccccc-ccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 2333334444332 1111 236777777777763 344 777778888888888877 6677788888
Q ss_pred cccEEEcCCccccccccccccCCccccEEEccCCcCcCCC-cccccCcCCCcEEEcccCCCCCCcch---hccCCCcccE
Q 045571 147 KLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGI-PQELGNLAKLEMLQLFQNNLTGEIPR---EFSNLAKLEM 222 (260)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~ 222 (260)
+|+.|++++|.+.+ +| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+++..+. .+..+|+|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 88888888888874 45 6777888888888888887665 77888888888888888888755332 2344788888
Q ss_pred EEc
Q 045571 223 MSL 225 (260)
Q Consensus 223 L~l 225 (260)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.4e-16 Score=110.49 Aligned_cols=127 Identities=21% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCccEEEccCCcCc-cccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEE
Q 045571 25 SSLQSLNLSFNRLS-GSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYI 103 (260)
Q Consensus 25 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 103 (260)
++++.|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+...++. .+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence 45666666666655 34455555566666666666655533 4455556666666666665522322 33345666666
Q ss_pred ecCCCcccCC-CCccccCCCCCcEEEccCccCCCCCc---ccccCCCcccEEEcC
Q 045571 104 SLSKNMFHGG-IPSALSKCTYLQILSLSFNDFSGAIP---KDIGNLTKLMELYLG 154 (260)
Q Consensus 104 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 154 (260)
++++|.+... .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666665432 12455666666677776666664333 245566666666654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.9e-16 Score=111.93 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=80.8
Q ss_pred CcceEEecCCCccc-CCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEE
Q 045571 98 PFLEYISLSKNMFH-GGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMS 176 (260)
Q Consensus 98 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 176 (260)
++|+.|++++|.+. ...+..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 23344455566666666666666533 4555666666666666666644555555566677777
Q ss_pred ccCCcCcCCC-cccccCcCCCcEEEcccCCCCCCcc---hhccCCCcccEEEcCCCcccc
Q 045571 177 LRESNLQGGI-PQELGNLAKLEMLQLFQNNLTGEIP---REFSNLAKLEMMSLSENNLQG 232 (260)
Q Consensus 177 l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~~~~ 232 (260)
+++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7777665432 1556666777777777777764443 356677777777777776553
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.1e-15 Score=109.57 Aligned_cols=114 Identities=25% Similarity=0.244 Sum_probs=80.9
Q ss_pred CCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEc
Q 045571 122 TYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQL 201 (260)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 201 (260)
++++.|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45667777777666444445666677777777777776555555667777777777777777665666777788888888
Q ss_pred ccCCCCCCcchhccCCCcccEEEcCCCccccchh
Q 045571 202 FQNNLTGEIPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 202 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
++|.+++..+..+..+++|+.|++++|++....+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888876666666778888888888888775443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=3.2e-15 Score=110.04 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=80.3
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccch-hhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS-AIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
+.+++++++++ .+|..+. +++++|++++|.+.+..+. .|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45777777776 4454443 3777777777777754443 367777777777777777766666677777777777777
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCC
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS 135 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 135 (260)
|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7766 444444445566666666666555444455555555555555555544
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=3.2e-17 Score=140.96 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=40.5
Q ss_pred cCCccccEEEccCCcCcCCCccccc-CcCCCcEEEcccCCCCCCcchhc-cCCCcccEEEcCCCccccchhH
Q 045571 167 GSLAELELMSLRESNLQGGIPQELG-NLAKLEMLQLFQNNLTGEIPREF-SNLAKLEMMSLSENNLQGVIIN 236 (260)
Q Consensus 167 ~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~ 236 (260)
..+++|+.|++++ .+.+.....+. .+++|++|++++|.++......+ ..+++|+.|++++|++++..+.
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 3445555666544 33322222222 26778888888887764444333 5678888888888887655443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.2e-16 Score=140.04 Aligned_cols=178 Identities=23% Similarity=0.315 Sum_probs=77.3
Q ss_pred chhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCC
Q 045571 42 PSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKC 121 (260)
Q Consensus 42 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 121 (260)
+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+. .++..+ ..+++|++|++++|.+. ..+..+..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 445556666666666666655 33444445666666666666665 555443 35666666666666665 445556666
Q ss_pred CCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCcc-ccEEEccCCcCcCCCcccccCcCCCcEEE
Q 045571 122 TYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAE-LELMSLRESNLQGGIPQELGNLAKLEMLQ 200 (260)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 200 (260)
++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..... +..+++.+|.+.+..|. .+..|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence 66666666666665 44555666666666666666665444444432211 12244555555443332 344455
Q ss_pred cccC--------CCCCCcchhccCCCcccEEEcCCCcc
Q 045571 201 LFQN--------NLTGEIPREFSNLAKLEMMSLSENNL 230 (260)
Q Consensus 201 l~~n--------~l~~~~~~~~~~~~~L~~L~l~~n~~ 230 (260)
++.| .+.+..+..+..+..+....+++|.+
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ------------------------------------CC
T ss_pred eecccccccccCCccccccchhhcccccceeeeecccc
Confidence 5444 22222222333444445555555554
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1e-14 Score=119.06 Aligned_cols=220 Identities=10% Similarity=0.105 Sum_probs=176.7
Q ss_pred cccEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEecc
Q 045571 2 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFS 81 (260)
Q Consensus 2 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 81 (260)
+|+.+.+.+ .++.+-..+|..+++|+.++++++.++.....+|. +.+|+.+.+..+ +......+|.++.+|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 467778775 56656678899999999999999999866666666 689999999854 665677889999999999998
Q ss_pred CCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCC-----CCCcccccCCCcccEEEcCCc
Q 045571 82 QNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFS-----GAIPKDIGNLTKLMELYLGRN 156 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~ 156 (260)
.+ +. .+....|.. .+|+.+.+..+ +......+|..+++|+.+.+.++... .+...+|.+|++|+.+++..
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CC-cc-Ccccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 75 44 677777766 78999999544 44456678999999999999887654 24556889999999999985
Q ss_pred cccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCC-cccEEEcCCCccc
Q 045571 157 RLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLA-KLEMMSLSENNLQ 231 (260)
Q Consensus 157 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~ 231 (260)
.+......+|..+.+|+.+.+..+ +......+|.+| +|+.+.+.+|......+..|..++ +++.+.+..+.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 466566788999999999999665 555667899999 999999999998877777888875 7889988876543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=8.8e-15 Score=107.69 Aligned_cols=126 Identities=23% Similarity=0.264 Sum_probs=71.3
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
+.+++++++++ .+|..+. +++++|++++|.++ ..|..|..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34566666666 3443332 46667777776666 44556666666666666666666555555666666666666666
Q ss_pred CCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccC
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDF 134 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 134 (260)
.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 665 44444444555555555555555433333444445555555554443
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=9.8e-16 Score=108.10 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=45.8
Q ss_pred CcEEEccCccCC-CCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcc
Q 045571 124 LQILSLSFNDFS-GAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLF 202 (260)
Q Consensus 124 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 202 (260)
++.|++++|.+. +..+..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 344444444333 22333333344444444444443322 333334444444444444443333333344444444444
Q ss_pred cCCCCCC-cchhccCCCcccEEEcCCCccccchh
Q 045571 203 QNNLTGE-IPREFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 203 ~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
+|.+++. .+..+..+++|+.|++++|.+.+..+
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 4444432 12344444445555555444444433
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=2.5e-16 Score=137.91 Aligned_cols=191 Identities=21% Similarity=0.334 Sum_probs=111.0
Q ss_pred CCccEEEccCCcCccccchhhhcCCCCcEEEcc-----CcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCCc
Q 045571 25 SSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFR-----ENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLPF 99 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-----~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 99 (260)
+.++.|++.++.+.. .+..+.....|+.+.|. .+.+. ..+..+..+..|+.|++++|.+. .++..++ .+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCC
Confidence 557788888877763 33333333334333332 23333 44667778889999999999887 7777776 7888
Q ss_pred ceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccC
Q 045571 100 LEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRE 179 (260)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (260)
|++|++++|.+. ..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999887 67777888899999999999988 67888888889999999999887 6677788888999999999
Q ss_pred CcCcCCCcccccCcC-CCcEEEcccCCCCCCcchhccCCCcccEEEcCCC
Q 045571 180 SNLQGGIPQELGNLA-KLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSEN 228 (260)
Q Consensus 180 ~~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 228 (260)
|.+.+..|..+.... ....+++++|.+++..|. .++.|+++.|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 988876666664432 223467888888766554 3455556555
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=2.1e-14 Score=104.25 Aligned_cols=127 Identities=22% Similarity=0.266 Sum_probs=63.8
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
+.+++++++++. +|..+ .+++++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345566665552 33222 246666666666665444445556666666666666655444444555555555555555
Q ss_pred CCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccC
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDF 134 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 134 (260)
.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Ccc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 554 33433333444455555544444422222333444444444444443
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=1.3e-14 Score=104.53 Aligned_cols=105 Identities=25% Similarity=0.273 Sum_probs=83.7
Q ss_pred CcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEccc
Q 045571 124 LQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQ 203 (260)
Q Consensus 124 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 203 (260)
.+.+++++++++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467778887777 4555443 6788888888888866677788888888888888888866667778888899999999
Q ss_pred CCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 204 NNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 204 n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
|.+++..+..+..+++|+.|+|++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9888776777888889999999998887
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=4.7e-14 Score=102.00 Aligned_cols=104 Identities=22% Similarity=0.307 Sum_probs=78.6
Q ss_pred cEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccC
Q 045571 125 QILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQN 204 (260)
Q Consensus 125 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 204 (260)
+.++++++++. .+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777776 4555443 67788888888877666777777888888888888887665566777888888888888
Q ss_pred CCCCCcchhccCCCcccEEEcCCCccc
Q 045571 205 NLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 205 ~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
.+++..+..+..+++|+.|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 888666666788888888888888877
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=2.6e-14 Score=103.68 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=105.8
Q ss_pred cccCCCCccEEEccCCcCccccchhhhcC-CCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCC
Q 045571 20 QLGNLSSLQSLNLSFNRLSGSIPSAIFTM-YTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98 (260)
Q Consensus 20 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (260)
.+..+++|++|++++|.++.. +. +..+ ++|++|++++|.+.+. ..+..+++|+.|++++|.+. .++..++..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 456778899999999988843 43 4444 4999999999988754 56778899999999999987 66766666889
Q ss_pred cceEEecCCCcccCCCCc--cccCCCCCcEEEccCccCCCCCcc----cccCCCcccEEEcCCcccc
Q 045571 99 FLEYISLSKNMFHGGIPS--ALSKCTYLQILSLSFNDFSGAIPK----DIGNLTKLMELYLGRNRLQ 159 (260)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 159 (260)
+|++|++++|.+. ..+. .+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999886 3443 6788899999999999987 4444 3778899999999988765
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.1e-14 Score=104.20 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=91.0
Q ss_pred hhcCCCCcEEEccCcccCCCCchhhccC-CCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccccCCCC
Q 045571 45 IFTMYTLKYVSFRENQLSGAFPSFIFNK-SSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSALSKCTY 123 (260)
Q Consensus 45 l~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 123 (260)
+.++.+|++|++++|.++.. +. +..+ ++|++|++++|.+. .+ ..+..+++|++|++++|.+....+..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~-~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIR-KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCC-EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCC-cc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45667788888888877743 33 3333 47888888888776 33 33456778888888888876443344477788
Q ss_pred CcEEEccCccCCCCCcc--cccCCCcccEEEcCCccccccccc----cccCCccccEEEccCCcCc
Q 045571 124 LQILSLSFNDFSGAIPK--DIGNLTKLMELYLGRNRLQGEIPR----EFGSLAELELMSLRESNLQ 183 (260)
Q Consensus 124 L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~ 183 (260)
|+.|++++|.+. ..+. .+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888876 3444 6677778888888888776 3343 3667778888888777654
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=8.5e-13 Score=95.01 Aligned_cols=104 Identities=24% Similarity=0.292 Sum_probs=63.0
Q ss_pred cEEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCC
Q 045571 4 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQN 83 (260)
Q Consensus 4 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 83 (260)
+.++++++.+++ +|..+. +++++|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666663 444332 56666777777666555666666666666666666666555555566666666666666
Q ss_pred CCCCccchhhhcCCCcceEEecCCCccc
Q 045571 84 TLSGEIPANICSNLPFLEYISLSKNMFH 111 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 111 (260)
.+. .++...+..+++|++|++++|.+.
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 665 444444445555666666555543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.3e-12 Score=94.32 Aligned_cols=102 Identities=25% Similarity=0.361 Sum_probs=48.1
Q ss_pred EEEecCCccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCC
Q 045571 5 VLNISRLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNT 84 (260)
Q Consensus 5 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 84 (260)
.++++++.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3455555554 3333332 455555555555554444455555555555555555544333334444555555555554
Q ss_pred CCCccchhhhcCCCcceEEecCCCcc
Q 045571 85 LSGEIPANICSNLPFLEYISLSKNMF 110 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~L~~L~l~~~~~ 110 (260)
+. .++...+..+++|++|++++|.+
T Consensus 93 l~-~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred cc-eeCHHHhccccCCCEEEeCCCCc
Confidence 44 33333333444444444444443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=7.5e-16 Score=114.01 Aligned_cols=151 Identities=20% Similarity=0.236 Sum_probs=95.8
Q ss_pred CCCccEEEccCCcCccccch------hhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCC
Q 045571 24 LSSLQSLNLSFNRLSGSIPS------AIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNL 97 (260)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 97 (260)
.+.++.++++.+.+.+..|. .+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+. .++... ..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcC
Confidence 34444444444444433333 67777777777777777764 33 5667777777777777766 454433 345
Q ss_pred CcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCc-ccccCCCcccEEEcCCccccccccc----------cc
Q 045571 98 PFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIP-KDIGNLTKLMELYLGRNRLQGEIPR----------EF 166 (260)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~ 166 (260)
++|+.|++++|.+.. .+ .+..+++|+.|++++|.+.+... ..+..+++|++|++++|.+.+..+. .+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 777777777777653 22 46667778888888887763222 3567778888888888877543332 35
Q ss_pred cCCccccEEEccCCcC
Q 045571 167 GSLAELELMSLRESNL 182 (260)
Q Consensus 167 ~~~~~L~~L~l~~~~l 182 (260)
..+++|+.|+ ++.+
T Consensus 171 ~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHCSSCSEEC--CGGG
T ss_pred HhCCCcEEEC--Cccc
Confidence 6677888776 4444
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=7.3e-13 Score=106.40 Aligned_cols=103 Identities=24% Similarity=0.284 Sum_probs=79.8
Q ss_pred EEEccCc-cCCCCCcccccCCCcccEEEcCC-ccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEccc
Q 045571 126 ILSLSFN-DFSGAIPKDIGNLTKLMELYLGR-NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQ 203 (260)
Q Consensus 126 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 203 (260)
.++++++ +++ .+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4566 77777888888885 877766667788888888888888888877777888888888888888
Q ss_pred CCCCCCcchhccCCCcccEEEcCCCccc
Q 045571 204 NNLTGEIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 204 n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
|.+.+..+..+..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888866666665555 888888888887
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=6e-15 Score=109.12 Aligned_cols=114 Identities=25% Similarity=0.282 Sum_probs=61.1
Q ss_pred cccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCC
Q 045571 117 ALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKL 196 (260)
Q Consensus 117 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 196 (260)
.+..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+.+ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44455555555555555553 33 4555555556666555555 344444444556666666665553 22 34555666
Q ss_pred cEEEcccCCCCCCcc-hhccCCCcccEEEcCCCccccchh
Q 045571 197 EMLQLFQNNLTGEIP-REFSNLAKLEMMSLSENNLQGVII 235 (260)
Q Consensus 197 ~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~ 235 (260)
++|++++|.++...+ ..+..+++|+.|++++|++.+..|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 666666666653222 345556666666666666554433
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=3.9e-15 Score=120.43 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=90.4
Q ss_pred CCCCcEEEccCcccCCCCchhhcc-----CCCccEEeccCCCCCCccchhhhcCCCcceEEecCCCcccCCCCccc----
Q 045571 48 MYTLKYVSFRENQLSGAFPSFIFN-----KSSLQHLDFSQNTLSGEIPANICSNLPFLEYISLSKNMFHGGIPSAL---- 118 (260)
Q Consensus 48 l~~L~~L~l~~~~l~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 118 (260)
+++|++|++++|.++......+.. ..+|++|++++|.+.+.....+...+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456777777777765433322222 25677777777776533333333345567777777776643222222
Q ss_pred -cCCCCCcEEEccCccCCCC----CcccccCCCcccEEEcCCcccccc----ccccccCCccccEEEccCCcCcCC----
Q 045571 119 -SKCTYLQILSLSFNDFSGA----IPKDIGNLTKLMELYLGRNRLQGE----IPREFGSLAELELMSLRESNLQGG---- 185 (260)
Q Consensus 119 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~---- 185 (260)
...+.|+.|++++|.+++. ++..+..+++|++|++++|.+.+. +...+...++|++|++++|.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345677777777766421 222334556677777777766522 233445555677777777666532
Q ss_pred CcccccCcCCCcEEEcccCCCCCCcc
Q 045571 186 IPQELGNLAKLEMLQLFQNNLTGEIP 211 (260)
Q Consensus 186 ~~~~~~~~~~L~~L~l~~n~l~~~~~ 211 (260)
+...+..+++|++|++++|.++....
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 22333445667777777776664333
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=7e-14 Score=113.14 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=102.6
Q ss_pred CCCccEEEccCCcCccccchhhhcC-----CCCcEEEccCcccCCCCchhh-ccCCCccEEeccCCCCCCccchhhh---
Q 045571 24 LSSLQSLNLSFNRLSGSIPSAIFTM-----YTLKYVSFRENQLSGAFPSFI-FNKSSLQHLDFSQNTLSGEIPANIC--- 94 (260)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~--- 94 (260)
++.++.|++++|.++......+... ++|++|++++|.+.......+ ..+.+|++|++++|.+.+.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777888777764444444322 577788887777653322222 2345677888888877632222221
Q ss_pred -cCCCcceEEecCCCcccCC----CCccccCCCCCcEEEccCccCCCC----CcccccCCCcccEEEcCCcccccc----
Q 045571 95 -SNLPFLEYISLSKNMFHGG----IPSALSKCTYLQILSLSFNDFSGA----IPKDIGNLTKLMELYLGRNRLQGE---- 161 (260)
Q Consensus 95 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---- 161 (260)
...++|++|++++|.+... ....+...++|+.|++++|.+.+. +...+..+++|++|++++|.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2456788888888776532 223345667788888888877532 234556667888888888887632
Q ss_pred ccccccCCccccEEEccCCcCcCC
Q 045571 162 IPREFGSLAELELMSLRESNLQGG 185 (260)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~l~~~ 185 (260)
+...+...++|++|++++|.+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 334455667888999999888653
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.29 E-value=5.5e-11 Score=97.13 Aligned_cols=201 Identities=14% Similarity=0.046 Sum_probs=109.4
Q ss_pred ccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcC
Q 045571 17 IPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSN 96 (260)
Q Consensus 17 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 96 (260)
-..+|..+++|+.+.+.++-. .....+|.++.+|+.+.+..+ +.......|.++..|+.+.+..+.. .+....+ .
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~-~ 228 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFAL-S 228 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTT-T
T ss_pred chhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhc-c
Confidence 345688889999999976543 356677888888988888754 3334455666777777666644422 1222222 3
Q ss_pred CCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcc---------------------cccCCCcccEEEcCC
Q 045571 97 LPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPK---------------------DIGNLTKLMELYLGR 155 (260)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------------~~~~~~~L~~L~l~~ 155 (260)
...|+.+.+..... ......+..+..++.+.+..+... .... .+..+.+|+.+.+..
T Consensus 229 ~~~l~~i~ip~~~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 229 KTGVKNIIIPDSFT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp TCCCCEEEECTTCC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT
T ss_pred cCCCceEEECCCce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecccccccccccccccccc
Confidence 44555555543221 122334444555555555443221 2222 344455555555544
Q ss_pred ccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCC
Q 045571 156 NRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSE 227 (260)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 227 (260)
+ +......+|..+.+|+.+++..+ +......+|.+|++|+.+.+..+ ++.....+|.+|++|+.+++..
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 3 33233445555666666666433 33334455666666666666544 4444555666666666666643
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=2.9e-10 Score=92.87 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=46.8
Q ss_pred ccEEEecCCccCCCccccccCCCCccEEEccCC---cCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEe
Q 045571 3 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSFN---RLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLD 79 (260)
Q Consensus 3 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 79 (260)
|+.+.+... ++.+-..+|.++.+|+.+.+..+ .++.....+|.++.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 666666543 55556677888888988888654 255455666666767666655432 2223344555555566555
Q ss_pred cc
Q 045571 80 FS 81 (260)
Q Consensus 80 l~ 81 (260)
+.
T Consensus 144 lp 145 (394)
T 4gt6_A 144 IP 145 (394)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=1.5e-10 Score=94.59 Aligned_cols=216 Identities=13% Similarity=0.046 Sum_probs=147.7
Q ss_pred ccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccCCCCCCccchhhhcCCC
Q 045571 19 SQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQNTLSGEIPANICSNLP 98 (260)
Q Consensus 19 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (260)
.+|..+..+....... .......+|.++.+|+.+.+..+. .......|..+.+|+.+.+..+ +. .+....+..+.
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~ 208 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECI 208 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCT
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhcccc
Confidence 4455544333332222 222456688999999999997653 3355677888999999988765 43 66777778899
Q ss_pred cceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCcccc-------------------
Q 045571 99 FLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQ------------------- 159 (260)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------- 159 (260)
.|+.+.+..+... . .........++.+.+.... .......+..+..++.+.+..+...
T Consensus 209 ~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 209 LLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp TCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS
T ss_pred ccceeecCCCceE-e-ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCc
Confidence 9998888765442 1 2223344678888876543 2234456777788888877654221
Q ss_pred -ccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhh
Q 045571 160 -GEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFL 238 (260)
Q Consensus 160 -~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 238 (260)
......+..+.+|+.+.+..+ +......+|.+|++|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|
T Consensus 286 ~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 286 VIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp SEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred eeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 011224556677888887654 44355678899999999999754 66577788999999999999876 888888999
Q ss_pred hcccccc
Q 045571 239 QFYSSSA 245 (260)
Q Consensus 239 ~~l~~l~ 245 (260)
.+|.+|+
T Consensus 363 ~~C~~L~ 369 (394)
T 4fs7_A 363 QGCINLK 369 (394)
T ss_dssp TTCTTCC
T ss_pred hCCCCCC
Confidence 9888776
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=7.1e-11 Score=94.80 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=87.5
Q ss_pred EEEecCC-ccCCCccccccCCCCccEEEccC-CcCccccchhhhcCCCCcEEEccCcccCCCCchhhccCCCccEEeccC
Q 045571 5 VLNISRL-NLTGTIPSQLGNLSSLQSLNLSF-NRLSGSIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKSSLQHLDFSQ 82 (260)
Q Consensus 5 ~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 82 (260)
.++.+++ ++++ +|. +..+++|++|+|++ |.+....+..|.++++|++|+|++|.+.+..+..|..+++|++|++++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3577777 7884 666 88899999999996 999877778899999999999999999988888889999999999999
Q ss_pred CCCCCccchhhhcCCCcceEEecCCCccc
Q 045571 83 NTLSGEIPANICSNLPFLEYISLSKNMFH 111 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 111 (260)
|.+. .++...+..++ |+.|++.+|.+.
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 9998 77777775555 999999988875
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=2.2e-09 Score=87.64 Aligned_cols=224 Identities=11% Similarity=0.124 Sum_probs=130.5
Q ss_pred CCCccccccCCC-CccEEEccCCcCccccchhhhcCCCCcEEEccCcc---cCCCCchhhccCCCccEEeccCCCCCCcc
Q 045571 14 TGTIPSQLGNLS-SLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQ---LSGAFPSFIFNKSSLQHLDFSQNTLSGEI 89 (260)
Q Consensus 14 ~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 89 (260)
+.+-..+|..+. .|+.+.+... ++.....+|.++.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +. .+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-ee
Confidence 334445676664 5888888754 665677788888889888887653 44445567777777777666443 22 44
Q ss_pred chhhhcCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCc----------------------cC-------------
Q 045571 90 PANICSNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFN----------------------DF------------- 134 (260)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------~~------------- 134 (260)
....|..+.+|+.+.+...... .....+..+..|+.+.+..+ ..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~-I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTS-VADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFAL 207 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTC
T ss_pred hhhhhhhhcccccccccceeee-ecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhcccc
Confidence 4445555666666665432211 11122222222222222111 00
Q ss_pred ----------------------------------------------CCCCcccccCCCcccEEEcCCccccccccccccC
Q 045571 135 ----------------------------------------------SGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGS 168 (260)
Q Consensus 135 ----------------------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 168 (260)
..+...+|.++..|+.+.+..+... ....++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCccccc
Confidence 0001123334445555555433221 33445555
Q ss_pred CccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhcccccc
Q 045571 169 LAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSA 245 (260)
Q Consensus 169 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 245 (260)
+..|+.+.+.. .+......+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 66666666643 333345567888889999988764 55566778899999999999654 7778888998888776
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.04 E-value=1.7e-08 Score=81.83 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=43.1
Q ss_pred ccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEcccCCCCCCcchhccCCCccc
Q 045571 142 IGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLE 221 (260)
Q Consensus 142 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 221 (260)
+.++..|+.+.+..+ +......++..+..|+.+.+..+ +......+|.+|++|+.+.+.++.++......|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444555544432 22122233334444444444322 2212233444555555555554444444444555555555
Q ss_pred EEEcCCCccccchhHhhhccccc
Q 045571 222 MMSLSENNLQGVIINFLQFYSSS 244 (260)
Q Consensus 222 ~L~l~~n~~~~~~~~~~~~l~~l 244 (260)
.+.|..+ ++.+...+|.+|.+|
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCC
Confidence 5555432 444444444444443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2.3e-08 Score=81.15 Aligned_cols=126 Identities=15% Similarity=0.062 Sum_probs=97.1
Q ss_pred cccCCCCCcEEEccCccCCCCCcccccCCCcccEEEcCCccccccccccccCCccccEEEccCCcCcCCCcccccCcCCC
Q 045571 117 ALSKCTYLQILSLSFNDFSGAIPKDIGNLTKLMELYLGRNRLQGEIPREFGSLAELELMSLRESNLQGGIPQELGNLAKL 196 (260)
Q Consensus 117 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 196 (260)
++..+..|+.+.+..+ ++.+...++.++.+|+.+.+..+ +......+|..+.+|+.+.+.++.+......+|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 4455566777776654 33344557788889999998754 443556688899999999999888876777899999999
Q ss_pred cEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccccccc
Q 045571 197 EMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSAC 246 (260)
Q Consensus 197 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~ 246 (260)
+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.++..++.
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~~ 360 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITKY 360 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCcC
Confidence 99999765 66577788999999999999764 77777888888866553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=6.7e-10 Score=89.23 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=78.2
Q ss_pred cCCCcceEEecCCCcccCCCCccccCCCCCcEEEccCccCCCCCccccc--CCCcccEEEcCC--ccccc-----ccccc
Q 045571 95 SNLPFLEYISLSKNMFHGGIPSALSKCTYLQILSLSFNDFSGAIPKDIG--NLTKLMELYLGR--NRLQG-----EIPRE 165 (260)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~--~~~~~-----~~~~~ 165 (260)
..+|+|+.|.+.++... ..+. + ..++|+.|++..+.+.......+. .+++|+.|+++. +...+ .+...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 35566666666554211 1111 2 256677777666655422111222 456677766642 11110 11112
Q ss_pred c--cCCccccEEEccCCcCcCCCcccc---cCcCCCcEEEcccCCCCCCcc----hhccCCCcccEEEcCCCccccchhH
Q 045571 166 F--GSLAELELMSLRESNLQGGIPQEL---GNLAKLEMLQLFQNNLTGEIP----REFSNLAKLEMMSLSENNLQGVIIN 236 (260)
Q Consensus 166 ~--~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~ 236 (260)
+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+..... ..+..+++|+.|++++|.+++...+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 246778888887777653222222 246788888888888775322 2234567888888888888766666
Q ss_pred hhhc
Q 045571 237 FLQF 240 (260)
Q Consensus 237 ~~~~ 240 (260)
.+..
T Consensus 326 ~l~~ 329 (362)
T 2ra8_A 326 ELQK 329 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=2.3e-09 Score=86.14 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=125.9
Q ss_pred CCccEEEccCCcCcc-c-------cchhhhcCCCCcEEEccCcccC---------CCCchhhccCCCccEEeccCCCCCC
Q 045571 25 SSLQSLNLSFNRLSG-S-------IPSAIFTMYTLKYVSFRENQLS---------GAFPSFIFNKSSLQHLDFSQNTLSG 87 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~-~-------~~~~l~~l~~L~~L~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~~~~~~ 87 (260)
..++.|.+......+ . ...+...+++|+.|.+.+.... ......+..+++|+.|.+.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457788887655431 1 1233457889999998654321 113344567799999999877322
Q ss_pred ccchhhhcCCCcceEEecCCCcccCCCCcccc--CCCCCcEEEccCc--cCCCC-----Ccccc--cCCCcccEEEcCCc
Q 045571 88 EIPANICSNLPFLEYISLSKNMFHGGIPSALS--KCTYLQILSLSFN--DFSGA-----IPKDI--GNLTKLMELYLGRN 156 (260)
Q Consensus 88 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~ 156 (260)
.++. + ..++|++|++..+.+.......+. .+++|+.|+++.+ ...+. +...+ ..+++|+.|++.+|
T Consensus 186 ~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2332 2 378999999988776533333333 6889999998532 11111 11122 24789999999998
Q ss_pred cccccccccc---cCCccccEEEccCCcCcCCC----cccccCcCCCcEEEcccCCCCCCcchhccC-CCcccEEEcCCC
Q 045571 157 RLQGEIPREF---GSLAELELMSLRESNLQGGI----PQELGNLAKLEMLQLFQNNLTGEIPREFSN-LAKLEMMSLSEN 228 (260)
Q Consensus 157 ~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n 228 (260)
.+.......+ ..+++|++|+++.|.+.+.. ...+..+++|+.|++++|.++......+.. + -..++++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 8763322222 24689999999999887532 223356789999999999887544443432 2 355788877
Q ss_pred c
Q 045571 229 N 229 (260)
Q Consensus 229 ~ 229 (260)
.
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 6
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=6.3e-09 Score=75.71 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=71.6
Q ss_pred cCCCCCcEEEccCc-cCCCC----CcccccCCCcccEEEcCCcccccc----ccccccCCccccEEEccCCcCcCC----
Q 045571 119 SKCTYLQILSLSFN-DFSGA----IPKDIGNLTKLMELYLGRNRLQGE----IPREFGSLAELELMSLRESNLQGG---- 185 (260)
Q Consensus 119 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~---- 185 (260)
...+.|+.|++++| .+.+. +...+...++|++|++++|.+.+. +...+...++|++|++++|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34455555666555 44321 223344456677777777766522 233444556777888888777642
Q ss_pred CcccccCcCCCcEEEc--ccCCCCCC----cchhccCCCcccEEEcCCCccccc
Q 045571 186 IPQELGNLAKLEMLQL--FQNNLTGE----IPREFSNLAKLEMMSLSENNLQGV 233 (260)
Q Consensus 186 ~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~ 233 (260)
+...+...+.|++|++ ++|.+... +...+...++|+.|++++|.+...
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3445666778888888 77888743 334556678899999999887633
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=2.8e-08 Score=70.79 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=62.0
Q ss_pred CcccEEEcCCccccccccccccCCccccEEEccCCc-CcCCCcccccC----cCCCcEEEcccCC-CCCCcchhccCCCc
Q 045571 146 TKLMELYLGRNRLQGEIPREFGSLAELELMSLRESN-LQGGIPQELGN----LAKLEMLQLFQNN-LTGEIPREFSNLAK 219 (260)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~----~~~L~~L~l~~n~-l~~~~~~~~~~~~~ 219 (260)
-.|+.|++++|.++..-...+..+++|++|++++|. +++..-..+.. +++|++|++++|. ++...-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357888888887765555566778888888888885 55432233443 3578899998885 77555566778899
Q ss_pred ccEEEcCCCc-cccc
Q 045571 220 LEMMSLSENN-LQGV 233 (260)
Q Consensus 220 L~~L~l~~n~-~~~~ 233 (260)
|+.|++++|+ +++.
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 9999999887 5543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.7e-08 Score=72.30 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=84.2
Q ss_pred ccccccCCCCccEEEccCC-cCcccc----chhhhcCCCCcEEEccCcccCCCC----chhhccCCCccEEeccCCCCCC
Q 045571 17 IPSQLGNLSSLQSLNLSFN-RLSGSI----PSAIFTMYTLKYVSFRENQLSGAF----PSFIFNKSSLQHLDFSQNTLSG 87 (260)
Q Consensus 17 ~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~ 87 (260)
+...+...+.|++|++++| .+.... ..++...++|++|++++|.+.... ...+...+.|++|++++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445677889999999998 887443 344556788999999999886432 3445566889999999998874
Q ss_pred ccch---hhhcCCCcceEEec--CCCcccCCC----CccccCCCCCcEEEccCccCC
Q 045571 88 EIPA---NICSNLPFLEYISL--SKNMFHGGI----PSALSKCTYLQILSLSFNDFS 135 (260)
Q Consensus 88 ~~~~---~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 135 (260)
.-.. ..+...+.|++|++ ++|.+.... ...+...+.|+.|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3222 22335678999999 778876432 234455688999999998765
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.54 E-value=4.7e-08 Score=69.66 Aligned_cols=85 Identities=7% Similarity=0.026 Sum_probs=61.1
Q ss_pred CCccEEEccCCcCccccchhhhcCCCCcEEEccCcc-cCCCCchhhccC----CCccEEeccCCC-CCCccchhhhcCCC
Q 045571 25 SSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQ-LSGAFPSFIFNK----SSLQHLDFSQNT-LSGEIPANICSNLP 98 (260)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~ 98 (260)
..|+.|+++++.++...-..+..+++|++|++++|. +++..-..+..+ ++|++|++++|. +++.-...+ ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 468889999888887777777888899999998885 554444445443 368899998875 663333333 4688
Q ss_pred cceEEecCCCcc
Q 045571 99 FLEYISLSKNMF 110 (260)
Q Consensus 99 ~L~~L~l~~~~~ 110 (260)
+|++|++++|.-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 899999888763
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=9.4e-07 Score=67.61 Aligned_cols=82 Identities=27% Similarity=0.288 Sum_probs=63.2
Q ss_pred cCCCCccEEEccCCcCcc--ccchhhhcCCCCcEEEccCcccCCCCchhhccCC--CccEEeccCCCCCCccc------h
Q 045571 22 GNLSSLQSLNLSFNRLSG--SIPSAIFTMYTLKYVSFRENQLSGAFPSFIFNKS--SLQHLDFSQNTLSGEIP------A 91 (260)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~------~ 91 (260)
..+++|+.|+|++|.+.+ ..+..+..+++|+.|+|++|.+.+. ..+..+. +|++|++.+|++...++ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 468899999999999986 3456778999999999999998854 2344444 89999999999875333 2
Q ss_pred hhhcCCCcceEEec
Q 045571 92 NICSNLPFLEYISL 105 (260)
Q Consensus 92 ~~~~~~~~L~~L~l 105 (260)
.++..+|+|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34557899988864
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.27 E-value=1.2e-06 Score=59.58 Aligned_cols=67 Identities=25% Similarity=0.356 Sum_probs=51.9
Q ss_pred EEEccCCcCc-CCCcccccCcCCCcEEEcccCCCCCCcchhccCCCcccEEEcCCCccccchhHhhhccccccccccccc
Q 045571 174 LMSLRESNLQ-GGIPQELGNLAKLEMLQLFQNNLTGEIPREFSNLAKLEMMSLSENNLQGVIINFLQFYSSSACFCNLYS 252 (260)
Q Consensus 174 ~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~~~~~~~ 252 (260)
.++.++..+. ..+|..+. +++++|++++|.++...+..|..+++|+.|+|++|++. |+|++.|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~--------------CdC~l~~ 75 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR--------------CDCRLVP 75 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB--------------CSGGGHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee--------------ccCccHH
Confidence 5666666664 13343332 56899999999999887888899999999999999999 9999888
Q ss_pred ceee
Q 045571 253 FACS 256 (260)
Q Consensus 253 ~~~~ 256 (260)
+..|
T Consensus 76 l~~w 79 (130)
T 3rfe_A 76 LRAW 79 (130)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=2.1e-06 Score=65.67 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=72.4
Q ss_pred ccCCCCccE--EEccCCcCc---cccchhhhcCCCCcEEEccCcccCCC--CchhhccCCCccEEeccCCCCCCccchhh
Q 045571 21 LGNLSSLQS--LNLSFNRLS---GSIPSAIFTMYTLKYVSFRENQLSGA--FPSFIFNKSSLQHLDFSQNTLSGEIPANI 93 (260)
Q Consensus 21 ~~~~~~L~~--L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 93 (260)
|...+.|+. ++++.|... ...+....++++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+......
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 344455554 566666433 11122225789999999999999863 34566789999999999999974312222
Q ss_pred hcCCCcceEEecCCCcccCCCC-------ccccCCCCCcEEE
Q 045571 94 CSNLPFLEYISLSKNMFHGGIP-------SALSKCTYLQILS 128 (260)
Q Consensus 94 ~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~ 128 (260)
+..+ +|+.|.+.+|.+....+ ..+..+++|+.|+
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 2334 89999999999875433 2356788888875
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=3.1e-05 Score=56.20 Aligned_cols=110 Identities=8% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCCcEEEccCc-cCCC----CCcccccCCCcccEEEcCCccccc----cccccccCCccccEEEccCCcCcCC----Ccc
Q 045571 122 TYLQILSLSFN-DFSG----AIPKDIGNLTKLMELYLGRNRLQG----EIPREFGSLAELELMSLRESNLQGG----IPQ 188 (260)
Q Consensus 122 ~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~----~~~ 188 (260)
+.|+.|+++++ .+.+ .+.+.+...+.|+.|++++|.+.+ .+...+...+.|++|++..|.+.+. +..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555553 4331 122334444566666666666652 2333444556677777777776542 223
Q ss_pred cccCcCCCcEEEcccCCC---CC----CcchhccCCCcccEEEcCCCccc
Q 045571 189 ELGNLAKLEMLQLFQNNL---TG----EIPREFSNLAKLEMMSLSENNLQ 231 (260)
Q Consensus 189 ~~~~~~~L~~L~l~~n~l---~~----~~~~~~~~~~~L~~L~l~~n~~~ 231 (260)
++...+.|++|+++++.. .. .+...+...+.|..|+++.+.+.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 445556678888775532 22 13344556678888888776544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00035 Score=50.66 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=69.0
Q ss_pred ccCCCcccEEEcCCc-cccc----cccccccCCccccEEEccCCcCcC----CCcccccCcCCCcEEEcccCCCCCC---
Q 045571 142 IGNLTKLMELYLGRN-RLQG----EIPREFGSLAELELMSLRESNLQG----GIPQELGNLAKLEMLQLFQNNLTGE--- 209 (260)
Q Consensus 142 ~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~--- 209 (260)
+...+.|++|+++++ .+.. .+..++.....|+.|++++|.+.+ .+...+...+.|++|+++.|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999985 6652 345567777899999999999975 2344556678999999999999853
Q ss_pred -cchhccCCCcccEEEcCCC---ccccc
Q 045571 210 -IPREFSNLAKLEMMSLSEN---NLQGV 233 (260)
Q Consensus 210 -~~~~~~~~~~L~~L~l~~n---~~~~~ 233 (260)
+...+...+.|+.|+|+++ .+...
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3345667788999999865 45543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.0013 Score=44.41 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=31.2
Q ss_pred EEEecCCccC-CCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccCccc
Q 045571 5 VLNISRLNLT-GTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRENQL 61 (260)
Q Consensus 5 ~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 61 (260)
.++.++.+++ ..+|..+. +++++|+|++|.++...+..|..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3455555554 13343332 4566677777766655555566666666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.90 E-value=0.76 Score=29.04 Aligned_cols=42 Identities=12% Similarity=-0.030 Sum_probs=21.1
Q ss_pred cccccccCCccccEEEccCCcCcCCCcccccCcCCCcEEEccc
Q 045571 161 EIPREFGSLAELELMSLRESNLQGGIPQELGNLAKLEMLQLFQ 203 (260)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 203 (260)
....+|..+..|+.+.+..+- ......+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 334455555555555555432 223344555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.46 E-value=3.2 Score=26.07 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=27.9
Q ss_pred CccCCCccccccCCCCccEEEccCCcCccccchhhhcCCCCcEEEccC
Q 045571 11 LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTMYTLKYVSFRE 58 (260)
Q Consensus 11 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 58 (260)
-.++.+-...|.++..|+.+.+..+ ++.....+|.++.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445455566666677777666654 3334555666666666666654
Done!