BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045573
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 38 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 95
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 96 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 154
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 155 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 187
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PTI FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 33 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 90
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 91 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 149
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 150 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PTI FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PTI FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PTI FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 34 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 91
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 92 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 150
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 151 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 183
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 29 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 86
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 87 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 145
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 146 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 178
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PTI FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 35 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PTI FL ++L
Sbjct: 93 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 32 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 89
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 90 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 148
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 149 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 181
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 33 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 90
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 91 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 149
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 150 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 31 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 88
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 89 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 147
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 148 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 31 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 88
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 89 LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 147
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
+L L+L D + +L Y PS
Sbjct: 148 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 34 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 91
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y+ + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 92 LASKFEEIYPPEVAEFVYITDDTYSKK-QVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLH 150
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPS 495
+L L+L D + +L Y PS
Sbjct: 151 LQPANCKVESLAMFLGELSLIDADPYLKYLPS 182
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 31 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 88
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y+ + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 89 LASKFEEIYPPEVAEFVYITDDTYSKK-QVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLH 147
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPS 495
+L L+L D + +L Y PS
Sbjct: 148 LQPANCKVESLAMFLGELSLIDADPYLKYLPS 179
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
D+ R+ +V W+VE K L ET+ L V+ +DRFLS ++ LQ+VG A +
Sbjct: 31 DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 88
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
LA++ EE P Y+ + +V+ ME LV +VL F PT+ FL ++L
Sbjct: 89 LASKFEEIYPPEVAEFVYITDDTYSKK-QVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLH 147
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPS 495
+L L+L D + +L Y PS
Sbjct: 148 LQPANCKVESLAMFLGELSLIDADPYLKYLPS 179
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 363 EQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATR 422
+ R+ ++ W++E C +LH+ET +L DR+++ +K LQ++G++ L +A +
Sbjct: 48 KMRAILLDWLMEV-CEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAK 106
Query: 423 IEENQP---------YNGRC---EVVAMEWLVQEVLNFQCFLPTIYNFLWFYL 463
+EE P +G C E++ ME ++ + L ++ TI ++L Y+
Sbjct: 107 LEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYM 159
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 21/124 (16%)
Query: 350 EYFSGTEY-GDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRN 408
+Y G E G++ R+ ++ W+V+ Q + L QETM++ VS++DRF+ K+
Sbjct: 26 KYLLGREVTGNM----RAILIDWLVQVQMKFRLL-QETMYMTVSIIDRFMQNNSVP-KKM 79
Query: 409 LQIVGVACLALATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTI 455
LQ+VGV + +A++ EE P Y + ++ ME + LNF P
Sbjct: 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYT-KHQIRQMEMKILRALNFGLGRPLP 138
Query: 456 YNFL 459
+FL
Sbjct: 139 LHFL 142
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 350 EYFSGTEY-GDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRN 408
+Y G E G++ R+ ++ W+V+ Q + L QETM++ VS++DRF+ K+
Sbjct: 24 KYLLGREVTGNM----RAILIDWLVQVQMKFRLL-QETMYMTVSIIDRFMQNNCVP-KKM 77
Query: 409 LQIVGVACLALATRIEENQP------------YNGRCEVVAMEWLVQEVLNFQCFLPTIY 456
LQ+VGV + +A++ EE P + ++ ME + LNF P
Sbjct: 78 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPL 137
Query: 457 NFLWFYLXXXXXXXXXXXXXXYLAVLALSDHEHLSYWPS 495
+FL YL L + D++ + + PS
Sbjct: 138 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPS 176
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 351 YFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQ 410
YF + +++ R + W++E C ++ +E L ++ LDRFLS K K LQ
Sbjct: 30 YFKCVQ-KEVLPSMRKIVATWMLEV-CEEQKCEEEVFPLAMNYLDRFLSLEPVK-KSRLQ 86
Query: 411 IVGVACLALATRIEENQPYNG 431
++G C+ +A++++E P
Sbjct: 87 LLGATCMFVASKMKETIPLTA 107
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 351 YFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQ 410
YF + +++ R + W++E C ++ +E L ++ LDRFLS K K LQ
Sbjct: 44 YFKCVQ-KEVLPSMRKIVATWMLEV-CEEQKCEEEVFPLAMNYLDRFLSLEPVK-KSRLQ 100
Query: 411 IVGVACLALATRIEENQPYNG 431
++G C+ +A++++E P
Sbjct: 101 LLGATCMFVASKMKETIPLTA 121
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 365 RSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIE 424
R + +W++E C + +E L ++ LDR+LS + K LQ++G C+ LA+++
Sbjct: 71 RKMLAYWMLEV-CEEQRCEEEVFPLAMNYLDRYLSCVPTR-KAQLQLLGAVCMLLASKLR 128
Query: 425 ENQPYN 430
E P
Sbjct: 129 ETTPLT 134
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 363 EQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATR 422
+ R+ ++ W+ C + EL + L VS+LDR+L + K+ LQ +G AC+ + ++
Sbjct: 50 DNRTILLTWM-HLLCESFELDKSVFPLSVSILDRYLCKK-QGTKKTLQKIGAACVLIGSK 107
Query: 423 IEENQPY 429
I +P
Sbjct: 108 IRTVKPM 114
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 363 EQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATR 422
+ R+ ++ W+ C + EL + L VS+LDR+L + K+ LQ +G AC+ + ++
Sbjct: 29 DNRTILLTWM-HLLCESFELDKSVFPLSVSILDRYLCKK-QGTKKTLQKIGAACVLIGSK 86
Query: 423 IEENQP 428
I +P
Sbjct: 87 IRTVKP 92
>pdb|1Y7Y|A Chain A, High-Resolution Crystal Structure Of The Restriction-
Modification Controller Protein C.Ahdi From Aeromonas
Hydrophila
pdb|1Y7Y|B Chain B, High-Resolution Crystal Structure Of The Restriction-
Modification Controller Protein C.Ahdi From Aeromonas
Hydrophila
Length = 74
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 344 LYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFF 403
+ + + Y ++G +RE R TAK L QET+ +S LDR G
Sbjct: 1 MQSHHDHYADLVKFGQRLRELR------------TAKGLSQETLAF-LSGLDRSYVGGVE 47
Query: 404 KIKRNLQIVGVACLALATRIEENQPY 429
+ +RN+ +V + LA A IE + +
Sbjct: 48 RGQRNVSLVNILKLATALDIEPRELF 73
>pdb|2INP|A Chain A, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|B Chain B, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 494
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 65 EEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEV 104
EE E + T Q ++PFR +Y+K Q E E K Y +
Sbjct: 31 EEDFEGIKITDWSQWEDPFRLTMDAYWKYQAEKEKKLYAI 70
>pdb|3U52|A Chain A, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|B Chain B, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 511
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 65 EEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEV 104
EE E + T Q ++PFR +Y+K Q E E K Y +
Sbjct: 36 EEDFEGIKITDWSQWEDPFRLTMDAYWKYQAEKEKKLYAI 75
>pdb|2INN|A Chain A, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
pdb|2INN|B Chain B, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
Length = 511
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 65 EEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEV 104
EE E + T Q ++PFR +Y+K Q E E K Y +
Sbjct: 36 EEDFEGIKITDWSQWEDPFRLTXDAYWKYQAEKEKKLYAI 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,259,203
Number of Sequences: 62578
Number of extensions: 477026
Number of successful extensions: 1095
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 37
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)