Query 045573
Match_columns 535
No_of_seqs 236 out of 1538
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:27:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 4.5E-42 1.5E-46 340.5 17.2 204 323-535 3-220 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 3.5E-42 1.2E-46 343.5 14.7 205 321-535 1-217 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 9E-42 3.1E-46 337.9 16.7 200 328-535 20-240 (257)
4 3g33_B CCND3 protein; Ser/Thr 100.0 2E-41 6.9E-46 344.9 18.1 203 326-535 37-259 (306)
5 2f2c_A Cyclin homolog, V-cycli 100.0 4.2E-41 1.4E-45 332.5 19.0 200 328-535 21-240 (254)
6 1f5q_B Gamma herpesvirus cycli 100.0 9.3E-40 3.2E-44 324.9 14.6 194 327-535 21-234 (252)
7 1w98_B Cyclin E, G1/S-specific 100.0 7E-39 2.4E-43 322.3 18.1 201 319-535 10-234 (283)
8 2w96_A G1/S-specific cyclin-D1 100.0 9.4E-39 3.2E-43 318.5 16.8 202 327-535 24-249 (271)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.6E-30 5.6E-35 255.9 11.3 174 358-534 34-242 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 5.9E-30 2E-34 252.4 14.8 170 360-534 26-231 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 1.1E-28 3.6E-33 248.5 14.4 167 362-534 40-233 (285)
12 1zp2_A RNA polymerase II holoe 100.0 1.5E-28 5.1E-33 240.0 11.1 165 365-534 28-211 (235)
13 2pk2_A Cyclin-T1, protein TAT; 99.9 7.1E-29 2.4E-33 257.9 7.7 170 360-534 33-238 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.9 7.8E-27 2.7E-31 239.2 14.2 170 363-534 55-252 (323)
15 1c9b_A General transcription f 99.9 8.1E-23 2.8E-27 195.4 16.0 168 364-535 4-181 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 4E-19 1.4E-23 168.7 15.6 166 365-534 9-186 (200)
17 3k7a_M Transcription initiatio 99.6 1.1E-15 3.7E-20 158.0 5.5 167 365-535 126-314 (345)
18 4bbr_M Transcription initiatio 99.0 4.2E-10 1.5E-14 116.5 5.7 162 366-531 127-310 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 97.6 0.00015 5.2E-09 73.6 9.6 97 368-466 77-185 (293)
20 1ais_B TFB TFIIB, protein (tra 94.2 0.095 3.2E-06 49.0 7.3 79 454-533 11-89 (200)
21 1c9b_A General transcription f 92.6 0.25 8.5E-06 46.4 7.3 78 455-533 8-85 (207)
22 4bbr_M Transcription initiatio 86.0 1.9 6.4E-05 44.4 8.3 81 453-534 127-207 (345)
23 1zp2_A RNA polymerase II holoe 84.7 2.2 7.6E-05 40.8 7.7 59 455-513 31-90 (235)
24 2b9r_A Human cyclin B1; cell c 79.8 4 0.00014 40.0 7.5 77 456-532 42-120 (269)
25 2w96_A G1/S-specific cyclin-D1 75.5 7.2 0.00025 38.0 8.0 75 458-532 63-139 (271)
26 2cch_B Cyclin A2, cyclin-A; co 74.9 4.2 0.00014 39.5 6.1 76 457-532 44-121 (260)
27 1g3n_C V-cyclin; cyclin-depend 73.6 4.9 0.00017 38.9 6.2 76 457-532 56-133 (257)
28 2ivx_A Cyclin-T2; transcriptio 73.4 12 0.00039 36.1 8.7 58 455-512 34-91 (257)
29 2f2c_A Cyclin homolog, V-cycli 72.7 5.5 0.00019 38.5 6.2 76 456-531 56-133 (254)
30 2i53_A Cyclin K; cell cycle, t 71.4 14 0.00047 35.5 8.7 57 456-512 45-101 (258)
31 3k7a_M Transcription initiatio 71.2 0.9 3.1E-05 46.5 0.3 78 455-533 129-206 (345)
32 3rgf_B Cyclin-C; protein kinas 69.6 15 0.0005 36.3 8.7 58 456-513 47-104 (285)
33 2pk2_A Cyclin-T1, protein TAT; 68.4 10 0.00035 38.9 7.5 58 455-512 41-98 (358)
34 3g33_B CCND3 protein; Ser/Thr 67.6 7.6 0.00026 38.9 6.2 74 458-531 77-152 (306)
35 1jkw_A Cyclin H; cell cycle, c 65.6 12 0.00039 37.9 7.1 56 457-512 62-119 (323)
36 3h4c_A Transcription factor TF 64.4 47 0.0016 32.4 10.5 61 367-430 14-76 (260)
37 1w98_B Cyclin E, G1/S-specific 63.8 12 0.00042 36.9 6.7 74 459-532 57-133 (283)
38 2pmi_B PHO85 cyclin PHO80, ami 58.2 26 0.00089 35.5 8.0 80 452-531 74-156 (293)
39 1f5q_B Gamma herpesvirus cycli 39.9 90 0.0031 30.3 8.4 75 457-531 54-130 (252)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=4.5e-42 Score=340.53 Aligned_cols=204 Identities=30% Similarity=0.420 Sum_probs=193.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCc
Q 045573 323 EDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGF 402 (535)
Q Consensus 323 edEY~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~ 402 (535)
+.+|.+|||.+|+++|.++.|.++|++. |++|++.||.++||||+++ +..|++.++|+++||+|||||+++..
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~------q~~i~~~~R~~lvdwl~~v-~~~~~l~~~tl~lAv~~lDRfls~~~ 75 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK------QPDITNSMRAILVDWLVEV-GEEYKLQNETLHLAVNYIDRFLSSMS 75 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG------CSSCCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc------CCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhccCC
Confidence 4689999999999999999999999985 5899999999999999999 99999999999999999999999999
Q ss_pred ccccccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccCh
Q 045573 403 FKIKRNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADA 470 (535)
Q Consensus 403 V~~~~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~ 470 (535)
+. +.++||+|+||||||+|+||..||.. +++|++||+.||++|+|+++.|||++|+.+|+..++.+.
T Consensus 76 v~-~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~ 154 (260)
T 2cch_B 76 VL-RGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN 154 (260)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC
T ss_pred CC-HHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh
Confidence 97 89999999999999999999988765 899999999999999999999999999999999998665
Q ss_pred -hhHHHHHHHHHHHhcccc-ccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCccccccC
Q 045573 471 -GVDKKAKYLAVLALSDHE-HLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 471 -~i~~lA~yLLelsLld~~-fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eCik 535 (535)
++..+|+++++++++++. ++.|+||.||+|||++|+.+++. +.|...++.++||++++|++|++
T Consensus 155 ~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~ 220 (260)
T 2cch_B 155 CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLM 220 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHH
Confidence 899999999999999999 99999999999999999999987 78999999999999999999974
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.5e-42 Score=343.51 Aligned_cols=205 Identities=26% Similarity=0.360 Sum_probs=190.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhc
Q 045573 321 RFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSR 400 (535)
Q Consensus 321 ~~edEY~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk 400 (535)
|++.||.+|||.+|+++|.++.++++|++. | +|++.||.++|+||+++ +..|+++++|+++||+|+|||+++
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~------q-~i~~~~R~~lv~wl~~v-~~~~~l~~~tl~lAv~~lDRfl~~ 72 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLG------R-EVTGNMRAILIDWLVQV-QMKFRLLQETMYMTVSIIDRFMQN 72 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSS------S-SSCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccC------C-CCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhcC
Confidence 456789999999999999999999999863 4 89999999999999999 999999999999999999999999
Q ss_pred CcccccccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhcc
Q 045573 401 GFFKIKRNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKA 468 (535)
Q Consensus 401 ~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~ 468 (535)
..+. +.++||+|+||||||+|+||..||.. +++|++||+.||++|+|+++.|||++|+.+|+...+.
T Consensus 73 ~~v~-~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~ 151 (269)
T 2b9r_A 73 NSVP-KKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEV 151 (269)
T ss_dssp SCCC-GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCC
T ss_pred CCCc-HHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCC
Confidence 9997 89999999999999999999988764 8999999999999999999999999999999999988
Q ss_pred ChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCccccccC
Q 045573 469 DAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 469 d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eCik 535 (535)
+.++..+|++++++++.++.++.|+||.||+|||++|+.++|. ..|.+.++.++||++++|.+|++
T Consensus 152 ~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~-~~w~~~l~~~tg~~~~~l~~~~~ 217 (269)
T 2b9r_A 152 DVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN-GEWTPTLQHYLSYTEESLLPVMQ 217 (269)
T ss_dssp CHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC-CCSCTTHHHHSCCCSSTTTTHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHCCCHHHHHHHHH
Confidence 8899999999999999999999999999999999999999998 57999999999999999999974
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9e-42 Score=337.88 Aligned_cols=200 Identities=20% Similarity=0.189 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccc
Q 045573 328 EESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKR 407 (535)
Q Consensus 328 eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~ 407 (535)
+||| +|+++|.++.|.++|+... |++|++.||.++||||++| +..|++.++|+++||+|||||+++..+. +.
T Consensus 20 ~~i~-~l~~~E~~~~p~~~y~~~~-----q~~i~~~~R~~lvdwl~ev-~~~~~l~~etl~lAv~~~DRfls~~~v~-~~ 91 (257)
T 1g3n_C 20 RIFY-NILEIEPRFLTSDSVFGTF-----QQSLTSHMRKLLGTWMFSV-CQEYNLEPNVVALALNLLDRLLLIKQVS-KE 91 (257)
T ss_dssp HHHH-HHHHHGGGGCCCGGGHHHH-----TSSCCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHTTTCCCC-HH
T ss_pred HHHH-HHHHHHHHhCCChhHHHhc-----CccCCHHHHHHHHHHHHHH-HHHhCCCccHHHHHHHHHHHHHccCCCC-HH
Confidence 8999 9999999999999998643 4799999999999999999 9999999999999999999999999997 89
Q ss_pred cchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChh----
Q 045573 408 NLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAG---- 471 (535)
Q Consensus 408 ~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~---- 471 (535)
++||+|+||||||+|+||..||.. +++|++||+.||++|+|+++.|||++|+.+|+..++.+.+
T Consensus 92 ~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~ 171 (257)
T 1g3n_C 92 HFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDF 171 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHH
Confidence 999999999999999999988865 8999999999999999999999999999999999986654
Q ss_pred hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHhCCCcCccccccC
Q 045573 472 VDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQD-----TSYHRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 472 i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~-----~~W~~~Lq~lTGyt~~dL~eCik 535 (535)
+..+|+++++++++++.|+.|+||.||||||++|+..++.. ..|...+..++||+.++|++|++
T Consensus 172 ~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~ 240 (257)
T 1g3n_C 172 WHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVE 240 (257)
T ss_dssp HHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHH
Confidence 46789999999999999999999999999999999998843 57999999999999999999974
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2e-41 Score=344.88 Aligned_cols=203 Identities=23% Similarity=0.295 Sum_probs=187.0
Q ss_pred cHHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccc
Q 045573 326 EDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKI 405 (535)
Q Consensus 326 Y~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~ 405 (535)
|.+|||++|+++|.++.|.++|++.. |++|++.||.++|+||++| +..|++.++|+++||+||||||++..+.
T Consensus 37 ~~~~i~~~l~~~E~~~~p~~~y~~~~-----q~~i~~~~R~~lvdwl~ev-~~~~~l~~~t~~lAv~~lDRfls~~~v~- 109 (306)
T 3g33_B 37 GDQRVLQSLLRLEERYVPRASYFQCV-----QREIKPHMRKMLAYWMLEV-CEEQRCEEEVFPLAMNYLDRYLSCVPTR- 109 (306)
T ss_dssp CHHHHHHHHHHHGGGGSCSSCCTTTS-----TTTCCHHHHHHHHHHHHHH-HHHTTCCTTHHHHHHHHHHHHHHHCCCC-
T ss_pred chHHHHHHHHHHHHHhCCCcHHHhhc-----CccCCHHHHHHHHHHHHHH-HHHhCCcHhHHHHHHHHHHHHHhcCCCc-
Confidence 88999999999999999999999753 4899999999999999999 9999999999999999999999999997
Q ss_pred cccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChh--
Q 045573 406 KRNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAG-- 471 (535)
Q Consensus 406 ~~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~-- 471 (535)
+.++||+|+||||||+|+||..|+.. +++|++||+.||++|+|+++.|||++||.+|+..++....
T Consensus 110 ~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~ 189 (306)
T 3g33_B 110 KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQ 189 (306)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHH
Confidence 99999999999999999999988765 8999999999999999999999999999999998875533
Q ss_pred --hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCc----hHHHHHHHhCCCcCccccccC
Q 045573 472 --VDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTS----YHRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 472 --i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~----W~~~Lq~lTGyt~~dL~eCik 535 (535)
+...|+++++++++++.|+.|+||+||||||++|+..++..+. |...|..++||++++|++|++
T Consensus 190 ~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~ 259 (306)
T 3g33_B 190 ALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQE 259 (306)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHH
Confidence 5678999999999999999999999999999999999987543 578899999999999999973
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=4.2e-41 Score=332.53 Aligned_cols=200 Identities=18% Similarity=0.215 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccc
Q 045573 328 EESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKR 407 (535)
Q Consensus 328 eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~ 407 (535)
+|||. |+++|.++.|.++|++.. |+++++.||.++||||+++ +..|++.++|+|+||+|+|||+++..+. +.
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~-----q~~i~~~~R~~lvdwl~~v-~~~~~l~~etl~lAv~~~DRfls~~~v~-~~ 92 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEI-----QTEVTVDNRTILLTWMHLL-CESFELDKSVFPLSVSILDRYLCKKQGT-KK 92 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTT-----CSSCCHHHHHHHHHHHHHH-HHHTTCCTTHHHHHHHHHHHHTTTSCCC-TT
T ss_pred HHHHH-HHHHHHhhCCCchhhhhc-----CccCCHHHHHHHHHHHHHH-HHHHCCCchHHHHHHHHHHHHHccCCcC-HH
Confidence 89999 999999999999998643 5899999999999999999 9999999999999999999999999997 99
Q ss_pred cchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChh----
Q 045573 408 NLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAG---- 471 (535)
Q Consensus 408 ~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~---- 471 (535)
++||+|+||||||+|+||..||.. +++|++||+.||++|+|+++.|||++|+.+|+..++.+.+
T Consensus 93 ~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~ 172 (254)
T 2f2c_A 93 TLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQ 172 (254)
T ss_dssp THHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHH
T ss_pred HccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHH
Confidence 999999999999999999988765 8999999999999999999999999999999999987654
Q ss_pred hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCC-ch---HHHHHHHhCCCcCccccccC
Q 045573 472 VDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDT-SY---HRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 472 i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~-~W---~~~Lq~lTGyt~~dL~eCik 535 (535)
++.+|++++++++.++.|+.|+||.||||||++|+...+..+ +| ...++.++||+.++|++|++
T Consensus 173 ~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~ 240 (254)
T 2f2c_A 173 LYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKD 240 (254)
T ss_dssp HHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHH
Confidence 367899999999999999999999999999999999874433 36 88999999999999999974
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.3e-40 Score=324.88 Aligned_cols=194 Identities=16% Similarity=0.220 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCccccc
Q 045573 327 DEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIK 406 (535)
Q Consensus 327 ~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~ 406 (535)
.++||.+|+++|.++.| .. .|++|++.||.++||||++| +..|++.++|+|+||+||||||++..+. +
T Consensus 21 ~d~i~~~l~~~E~~~~p----~~------~q~~i~~~~R~~lvdWl~ev-~~~~~l~~eT~~lAv~~lDRfLs~~~v~-~ 88 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVG----VN------VDQHFTSQYRKVLTTWMFCV-CKDLRQDNNVFPLAVALLDELFLSTRID-R 88 (252)
T ss_dssp HHHHHHHHHHHHHHHSS----SS------HHHHHHCSHHHHHHHHHHHH-HHHTTCCTTHHHHHHHHHHHHHHHSCCC-G
T ss_pred HHHHHHHHHHHHHHhCc----Cc------cCCCCCHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHhcCCCcC-H
Confidence 45999999999999866 11 24788999999999999999 9999999999999999999999999997 9
Q ss_pred ccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccCh----
Q 045573 407 RNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADA---- 470 (535)
Q Consensus 407 ~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~---- 470 (535)
.++||+|+||||||+|+||..||.. .++|++||+.||++|+|+++.|||++|+.+|+..++.+.
T Consensus 89 ~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~ 168 (252)
T 1f5q_B 89 ENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYL 168 (252)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHH
Confidence 9999999999999999999998875 899999999999999999999999999999999987654
Q ss_pred hhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCch----HHHHHHHhCCCcCccccccC
Q 045573 471 GVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSY----HRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 471 ~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W----~~~Lq~lTGyt~~dL~eCik 535 (535)
.+..+|.++++++++|+.|+.|+||+|||||+.+ .++...+| ...|++++||+.++|.+|++
T Consensus 169 ~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~---~l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~ 234 (252)
T 1f5q_B 169 NIYNLCRPKIFCALCDGRSAMKRPVLITLACMHL---TMNQKYDYYENRIDGVCKSLYITKEELHQCCD 234 (252)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHH---HhccCCCchhhHHHHHHHHHCcCHHHHHHHHH
Confidence 3667899999999999999999999999999544 44544455 67788999999999999963
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7e-39 Score=322.32 Aligned_cols=201 Identities=21% Similarity=0.320 Sum_probs=182.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHH
Q 045573 319 FVRFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFL 398 (535)
Q Consensus 319 ~~~~edEY~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFL 398 (535)
.++++.+|.+|||.+|+++|.++.+.++|++. |++|++.||.++|+||+++ +..|++.++|+++||+|||||+
T Consensus 10 ~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~------q~~i~~~~R~~lv~wl~~v-~~~~~l~~~tl~lAv~~lDRfl 82 (283)
T 1w98_B 10 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ------HPLLQPKMRAILLDWLMEV-CEVYKLHRETFYLAQDFFDRYM 82 (283)
T ss_dssp SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG------CTTCCHHHHHHHHHHHHHH-HHHTTCBHHHHHHHHHHHHHHH
T ss_pred CcchhhcCHHHHHHHHHHHHHHhCCCchhhcc------CCCCCHHHHHHHHHHHHHH-HHHhCCCccHHHHHHHHHHHHH
Confidence 45667789999999999999999999999974 5899999999999999999 9999999999999999999999
Q ss_pred hc-CcccccccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHH
Q 045573 399 SR-GFFKIKRNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKA 465 (535)
Q Consensus 399 sk-~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~ 465 (535)
++ ..+. +.++||+|+||||||+|+||..||.. +++|++||+.||++|+|+++.|||++||.+|+..
T Consensus 83 s~~~~v~-~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~ 161 (283)
T 1w98_B 83 ATQENVV-KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQV 161 (283)
T ss_dssp HHCCCCC-GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HhCCCCC-HHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHH
Confidence 98 5776 89999999999999999999988764 8999999999999999999999999999999998
Q ss_pred hccChh-----------hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCcccccc
Q 045573 466 AKADAG-----------VDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCI 534 (535)
Q Consensus 466 l~~d~~-----------i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eCi 534 (535)
++.+.. ....+.++++++++++.|+.|+||.||||||++|+ |.+.+..++||++++|++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~ 233 (283)
T 1w98_B 162 AYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS--------SSELMQKVSGYQWCDIENCV 233 (283)
T ss_dssp HTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHH
T ss_pred hccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHH
Confidence 764321 22357789999999999999999999999999974 68889999999999999997
Q ss_pred C
Q 045573 535 K 535 (535)
Q Consensus 535 k 535 (535)
+
T Consensus 234 ~ 234 (283)
T 1w98_B 234 K 234 (283)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=9.4e-39 Score=318.48 Aligned_cols=202 Identities=23% Similarity=0.365 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCccccc
Q 045573 327 DEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIK 406 (535)
Q Consensus 327 ~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~ 406 (535)
.+|||.+|+++|.++.|.++|+... |++|++.||.++|+||+++ +.+|++..+|+++||+|||||+++..+. +
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~~-----q~~i~~~~R~~lv~wl~~v-~~~~~l~~~tl~lAv~~lDRfls~~~v~-~ 96 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKCV-----QKEVLPSMRKIVATWMLEV-CEEQKCEEEVFPLAMNYLDRFLSLEPVK-K 96 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHHT-----CSSCCHHHHHHHHHHHHHH-HHHTTCCTTHHHHHHHHHHHHHTTSCCC-T
T ss_pred HHHHHHHHHHHHHHhCCCchHHHhc-----CCcCCHHHHHHHHHHHHHH-HHHHCCchhHHHHHHHHHHHhCCcCCcC-H
Confidence 4699999999999999999998754 4899999999999999999 9999999999999999999999999997 8
Q ss_pred ccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChh---
Q 045573 407 RNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAG--- 471 (535)
Q Consensus 407 ~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~--- 471 (535)
.++||+|+||||||+|+||..|+.. +++|++||+.||++|+|+++.|||++||.+|+..++.+..
T Consensus 97 ~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~ 176 (271)
T 2w96_A 97 SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQ 176 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHH
Confidence 9999999999999999999988765 8999999999999999999999999999999999876654
Q ss_pred -hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCC----CC----chHHHHHHHhCCCcCccccccC
Q 045573 472 -VDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQ----DT----SYHRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 472 -i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~----~~----~W~~~Lq~lTGyt~~dL~eCik 535 (535)
+...|++++++++.++.|+.|+||.||||||++|+..++. .+ .|.+.+..++||++++|++|++
T Consensus 177 ~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~ 249 (271)
T 2w96_A 177 IIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQE 249 (271)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 3467899999999999999999999999999999988752 12 3567899999999999999973
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=1.6e-30 Score=255.92 Aligned_cols=174 Identities=24% Similarity=0.283 Sum_probs=154.0
Q ss_pred CCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc------
Q 045573 358 GDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG------ 431 (535)
Q Consensus 358 ~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~------ 431 (535)
+++...+|..+++||.++ +..|+|+++|+++|++|||||+++..+. +.++|+||+||||||+|+||. |+.+
T Consensus 34 ~~~e~~~R~~~~~~i~~v-~~~l~l~~~t~~~A~~~~dRf~~~~~~~-~~~~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 34 PATEARYRREGARFIFDV-GTRLGLHYDTLATGIIYFHRFYMFHSFK-QFPRYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHTTTSCTT-TSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhCChh-hcCHHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 456788999999999999 9999999999999999999999999997 899999999999999999995 4433
Q ss_pred -----------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccCh----hhHHHHHHHHHHHhcccccc
Q 045573 432 -----------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADA----GVDKKAKYLAVLALSDHEHL 490 (535)
Q Consensus 432 -----------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~----~i~~lA~yLLelsLld~~fl 490 (535)
+++|++||+.||++|+|++..|||++|+.+|+..++.+. .+..+|+++++.++.++.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l 190 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchh
Confidence 258999999999999999999999999999999988775 68999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHcCCC-CchHHH------HHH-HhCCCcCcccccc
Q 045573 491 SYWPSTVAAALVILALLESHQD-TSYHRV------IEI-HVRTKENDLPDCI 534 (535)
Q Consensus 491 ~y~PS~IAAAaI~LA~~iL~~~-~~W~~~------Lq~-lTGyt~~dL~eCi 534 (535)
.|+||.||+|||++|..++|.. +.|... +.. ++|++.++|.+|+
T Consensus 191 ~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~ 242 (258)
T 2i53_A 191 QWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDIC 242 (258)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHH
Confidence 9999999999999999998753 223211 112 3699999999986
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.96 E-value=5.9e-30 Score=252.41 Aligned_cols=170 Identities=19% Similarity=0.199 Sum_probs=152.9
Q ss_pred CcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc--------
Q 045573 360 LIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG-------- 431 (535)
Q Consensus 360 It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~-------- 431 (535)
....+|..+++||.++ +..|+|+++|+++|++|||||+++..+. +.++|+||+||||||+|+||. |+.+
T Consensus 26 ~e~~~R~~~~~~i~~v-~~~l~l~~~t~~~A~~~~dRf~~~~~~~-~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~ 102 (257)
T 2ivx_A 26 KELSCRQQAANLIQEM-GQRLNVSQLTINTAIVYMHRFYMHHSFT-KFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHTTTSCTT-TSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHhhCChh-hhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHH
Confidence 3457999999999999 9999999999999999999999999997 899999999999999999998 4432
Q ss_pred --------------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhc-ccccc
Q 045573 432 --------------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALS-DHEHL 490 (535)
Q Consensus 432 --------------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLl-d~~fl 490 (535)
+++|++||+.||++|+|++..|||+.||..|+..++.+..+..+|+++++.+++ +..++
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l 182 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCL 182 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGG
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHH
Confidence 468999999999999999999999999999999999999999999999999985 55589
Q ss_pred CCcHHHHHHHHHHHHHHHcCCC-------CchHHHHHHHhCCCcCcccccc
Q 045573 491 SYWPSTVAAALVILALLESHQD-------TSYHRVIEIHVRTKENDLPDCI 534 (535)
Q Consensus 491 ~y~PS~IAAAaI~LA~~iL~~~-------~~W~~~Lq~lTGyt~~dL~eCi 534 (535)
.|+||.||+|||++|..++|.. ..|...+ ..||+.++|.+|+
T Consensus 183 ~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~ 231 (257)
T 2ivx_A 183 QYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELT 231 (257)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHH
Confidence 9999999999999999998742 3476543 3589999999986
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=248.47 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc----------
Q 045573 362 REQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG---------- 431 (535)
Q Consensus 362 ~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~---------- 431 (535)
..+|..+++||.++ +..|+|+++|+++|++|||||+.+..+. ..++|+||+||||||+|+||..++..
T Consensus 40 ~~~R~~~~~~I~~v-~~~l~L~~~t~~tA~~~~~RF~~~~s~~-~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~ 117 (285)
T 3rgf_B 40 WKLQIFFTNVIQAL-GEHLKLRQQVIATATVYFKRFYARYSLK-SIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV 117 (285)
T ss_dssp HHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHSCTT-TSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHhCCch-hcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 46899999999999 9999999999999999999999999997 89999999999999999999987632
Q ss_pred ----------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHH
Q 045573 432 ----------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPS 495 (535)
Q Consensus 432 ----------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS 495 (535)
+++|++||+.||++|+|++..+||+.||..|+..++.+..+..+|+++++.++.+..++.|+|+
T Consensus 118 ~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps 197 (285)
T 3rgf_B 118 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPF 197 (285)
T ss_dssp HHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHH
T ss_pred HcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHH
Confidence 4789999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC-CchHHHHHHHhCCCcCcccccc
Q 045573 496 TVAAALVILALLESHQD-TSYHRVIEIHVRTKENDLPDCI 534 (535)
Q Consensus 496 ~IAAAaI~LA~~iL~~~-~~W~~~Lq~lTGyt~~dL~eCi 534 (535)
.||+|||++|..+++.. ..|.. ..|++.++|.+|+
T Consensus 198 ~IAaAaiylA~~~~~~~~~~W~~----~~~~~~~~l~~~~ 233 (285)
T 3rgf_B 198 MIALACLHVACVVQQKDARQWFA----ELSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHH----TSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhHHH----HHCCCHHHHHHHH
Confidence 99999999999999863 34654 4699999999996
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.5e-28 Score=239.97 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=149.6
Q ss_pred HHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCccccc-ccchhhhhhHhhhhhhhhccCCCC-------------
Q 045573 365 RSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIK-RNLQIVGVACLALATRIEENQPYN------------- 430 (535)
Q Consensus 365 R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~-~~LQLVgiTCLfIASK~EE~~pp~------------- 430 (535)
|..+++||.++ +..++|+++|+++|++|||||+.+..+. . .++|+||+||||||+|+||..+..
T Consensus 28 R~~~~~~i~~v-~~~l~L~~~t~~~A~~~~~Rf~~~~~~~-~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 28 TIYQWKVVQTF-GDRLRLRQRVLATAIVLLRRYMLKKNEE-KGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHCCSC-CCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcccc-cccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc
Confidence 99999999999 9999999999999999999999999997 7 899999999999999999964321
Q ss_pred ---c-HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHH
Q 045573 431 ---G-RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILAL 506 (535)
Q Consensus 431 ---~-~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~ 506 (535)
. +++|++||+.||++|+|++..+||+.||..|+..++.+.++...|+++++.++.+..++.|+||.||+|||++|.
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~ 185 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISC 185 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHH
Confidence 1 678999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred HHcCCC-CchHHHHHHHhCCCcCcccccc
Q 045573 507 LESHQD-TSYHRVIEIHVRTKENDLPDCI 534 (535)
Q Consensus 507 ~iL~~~-~~W~~~Lq~lTGyt~~dL~eCi 534 (535)
.+++.. +.|...++ |++.++|.+|+
T Consensus 186 ~~~~~~~~~~~~~~~---~~~~~~i~~~~ 211 (235)
T 1zp2_A 186 CNDENTIPKLLDLIK---STDAFKVILCV 211 (235)
T ss_dssp TSCTTHHHHHHHHCC---HHHHHHHHHHH
T ss_pred HhcCCCCCCCcchhh---cCCHHHHHHHH
Confidence 988753 23444333 88999999886
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.95 E-value=7.1e-29 Score=257.87 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=151.1
Q ss_pred CcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc--------
Q 045573 360 LIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG-------- 431 (535)
Q Consensus 360 It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~-------- 431 (535)
....||..+++||.++ +..|+|+++|+++||+|||||+++..+. ..++|+||+||||||+|+||. |+.+
T Consensus 33 ~E~~~R~~~v~wI~ev-~~~l~L~~~t~~tAv~~~dRFl~~~sv~-~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~ 109 (358)
T 2pk2_A 33 KELSYRQQAANLLQDM-GQRLNVSQLTINTAIVYMHRFYMIQSFT-RFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHHHHHHHHH-HTTTTCCHHHHHHHHHHHHHHTTTSCTT-TSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhcCCcc-cccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHH
Confidence 4468999999999999 9999999999999999999999999997 899999999999999999998 4322
Q ss_pred --------------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhc-ccccc
Q 045573 432 --------------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALS-DHEHL 490 (535)
Q Consensus 432 --------------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLl-d~~fl 490 (535)
+++|++||+.||++|+|++..|||+.||..|+..++.+.++..+|+++++.+++ +..++
T Consensus 110 ~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l 189 (358)
T 2pk2_A 110 TCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSL 189 (358)
T ss_dssp HHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh
Confidence 357899999999999999999999999999999999888999999999999996 44589
Q ss_pred CCcHHHHHHHHHHHHHHHcCCC-------CchHHHHHHHhCCCcCcccccc
Q 045573 491 SYWPSTVAAALVILALLESHQD-------TSYHRVIEIHVRTKENDLPDCI 534 (535)
Q Consensus 491 ~y~PS~IAAAaI~LA~~iL~~~-------~~W~~~Lq~lTGyt~~dL~eCi 534 (535)
.|+||.||+|||++|..+++.. ..|...+ ..+|+.++|.+|+
T Consensus 190 ~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~ 238 (358)
T 2pk2_A 190 QYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELT 238 (358)
T ss_dssp TSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHH
Confidence 9999999999999999998742 3476543 3578888888886
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.94 E-value=7.8e-27 Score=239.17 Aligned_cols=170 Identities=18% Similarity=0.173 Sum_probs=151.7
Q ss_pred HHHHHHHHHhHhhcccccc--CchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc---------
Q 045573 363 EQRSQMVHWIVEQQCTAKE--LHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG--------- 431 (535)
Q Consensus 363 ~~R~~LVDWMieV~~~~fk--Ls~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~--------- 431 (535)
.+|...++||.++ +..|+ |+++|+++|++|||||+....+. ..++|+||+||||||+|+||..+...
T Consensus 55 ~lr~~~~~~I~ev-~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~-~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 55 TLCKYYEKRLLEF-CSVFKPAMPRSVVGTACMYFKRFYLNNSVM-EYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHH-HHHCTTTCCHHHHHHHHHHHHHHGGGSCTT-TSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHhhhCChh-hcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 4899999999999 99999 99999999999999999999997 89999999999999999999843210
Q ss_pred -------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhc-------cChhhHHHHHHHHHHHhccccccCCcHHHH
Q 045573 432 -------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAK-------ADAGVDKKAKYLAVLALSDHEHLSYWPSTV 497 (535)
Q Consensus 432 -------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~-------~d~~i~~lA~yLLelsLld~~fl~y~PS~I 497 (535)
.++|++||+.||++|+|++..+||+.||..|+..+. ....+..+|+++++.++.+..++.|+||.|
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~I 212 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQI 212 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHH
Confidence 478999999999999999999999999999987652 224578999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC-CchHHHHHHH--hCCCcCcccccc
Q 045573 498 AAALVILALLESHQD-TSYHRVIEIH--VRTKENDLPDCI 534 (535)
Q Consensus 498 AAAaI~LA~~iL~~~-~~W~~~Lq~l--TGyt~~dL~eCi 534 (535)
|+|||++|...+|.. +.|...+..+ ++++.++|.+|+
T Consensus 213 AaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~ 252 (323)
T 1jkw_A 213 ALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIM 252 (323)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHH
Confidence 999999999999864 6798877665 788888888876
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.89 E-value=8.1e-23 Score=195.42 Aligned_cols=168 Identities=18% Similarity=0.100 Sum_probs=156.3
Q ss_pred HHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc----------HH
Q 045573 364 QRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG----------RC 433 (535)
Q Consensus 364 ~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~----------~~ 433 (535)
......+||.++ +..++|++.|+.+|+.|++||+....+. ..+.++||+||||||+|+||. |... ..
T Consensus 4 ~l~~a~~~I~~~-~~~L~L~~~v~~~A~~~~~r~~~~~~~~-~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 4 AMMNAFKEITTM-ADRINLPRNIVDRTNNLFKQVYEQKSLK-GRANDAIASACLYIACRQEGV-PRTFKEICAVSRISKK 80 (207)
T ss_dssp GHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHTCST-TSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHCCCHH
Confidence 356788999999 9999999999999999999999999997 889999999999999999997 4443 78
Q ss_pred HHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCC
Q 045573 434 EVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDT 513 (535)
Q Consensus 434 eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~ 513 (535)
+|.++|+.||+.|+|++..++|+.|+..|...++.+.++...|+++++.++.+.-+..++|+.||+|||++|..+.|. +
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~ 159 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-K 159 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-C
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-C
Confidence 999999999999999999999999999999999999999999999999999988889999999999999999999986 6
Q ss_pred chHHHHHHHhCCCcCccccccC
Q 045573 514 SYHRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 514 ~W~~~Lq~lTGyt~~dL~eCik 535 (535)
.|...+..++|++...|++|.+
T Consensus 160 ~~~~~i~~~~~v~~~tI~~~~~ 181 (207)
T 1c9b_A 160 RTQKEIGDIAGVADVTIRQSYR 181 (207)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 7888999999999999998853
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.80 E-value=4e-19 Score=168.71 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=154.5
Q ss_pred HHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc----------HHH
Q 045573 365 RSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG----------RCE 434 (535)
Q Consensus 365 R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~----------~~e 434 (535)
.....+||.++ +..++|++.+...|..|++|++....+. ....+.++++|||||+|.++. |... ..+
T Consensus 9 l~~a~~~I~~~-~~~L~L~~~v~~~A~~l~~~~~~~~~~~-gr~~~~vaaAclylAcr~~~~-p~~l~di~~~~~v~~~~ 85 (200)
T 1ais_B 9 LAFALSELDRI-TAQLKLPRHVEEEAARLYREAVRKGLIR-GRSIESVMAACVYAACRLLKV-PRTLDEIADIARVDKKE 85 (200)
T ss_dssp HHHHHHHHHHH-HHHHTCCHHHHHHHHHHHHHHHTTTTTT-TCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhCCCcC-CCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHCCCHHH
Confidence 56889999999 9999999999999999999999998886 778999999999999999994 4443 889
Q ss_pred HHHHHHHHHHHcCccccC--CCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCC
Q 045573 435 VVAMEWLVQEVLNFQCFL--PTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQD 512 (535)
Q Consensus 435 Il~mE~~IL~tLdFdL~~--PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~ 512 (535)
|.++++.|++.|+|++.. ++|+.|+..|...++.+..+...|+++++.+..+.-+.+++|+.||+|||++|.++.|.
T Consensus 86 i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~- 164 (200)
T 1ais_B 86 IGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE- 164 (200)
T ss_dssp HHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999 99999999999999999999999999999999988889999999999999999999986
Q ss_pred CchHHHHHHHhCCCcCcccccc
Q 045573 513 TSYHRVIEIHVRTKENDLPDCI 534 (535)
Q Consensus 513 ~~W~~~Lq~lTGyt~~dL~eCi 534 (535)
+.|...+..++|+++..|+.|.
T Consensus 165 ~~t~~ei~~~~~vs~~ti~~~~ 186 (200)
T 1ais_B 165 KRTQREVAEVARVTEVTVRNRY 186 (200)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHH
Confidence 6799999999999999998875
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-15 Score=157.97 Aligned_cols=167 Identities=14% Similarity=0.048 Sum_probs=71.7
Q ss_pred HHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc----------HHH
Q 045573 365 RSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG----------RCE 434 (535)
Q Consensus 365 R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~----------~~e 434 (535)
.......|..+ +..++|+..+.-.|..|+.+++....+. ....+.|+++|||||+|.++. |..+ ..+
T Consensus 126 l~~a~~~I~~~-~~~L~Lp~~v~d~A~~lyk~~~~~~~~k-gr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITML-CDAAELPKIVKDCAKEAYKLCHDEKTLK-GKSMESIMAASILIGCRRAEV-ARTFKEIQSLIHVKTKE 202 (345)
T ss_dssp HHHHHHHHHHH-HHHTTCCHHHHTHHHHHHHHHSSSCSSC-CCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSSCCSHH
T ss_pred HHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhcCccc-CCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHCCCHHH
Confidence 34677889999 9999999999999999999999998886 778999999999999999887 4433 789
Q ss_pred HHHHHHHHHHHcC------------ccccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHH
Q 045573 435 VVAMEWLVQEVLN------------FQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALV 502 (535)
Q Consensus 435 Il~mE~~IL~tLd------------FdL~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI 502 (535)
|.++++.|++.|+ +++..++|..||..|...++.+.++...|+++++.+..+.-+..++|+.||||||
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaI 282 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSI 282 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHhCCCcCccccccC
Q 045573 503 ILALLESHQDTSYHRVIEIHVRTKENDLPDCIK 535 (535)
Q Consensus 503 ~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eCik 535 (535)
++|..+++. ..|...+...+|+++..|+.+.+
T Consensus 283 ylAa~~~~~-~~t~~eIa~~~~Vse~TIr~~yk 314 (345)
T 3k7a_M 283 YLNILLFQI-PITAAKVGQTLQVTEGTIKSGYK 314 (345)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHH
Confidence 999999886 66889999999999988887653
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.95 E-value=4.2e-10 Score=116.48 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=67.3
Q ss_pred HHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc----------HHHH
Q 045573 366 SQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG----------RCEV 435 (535)
Q Consensus 366 ~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~----------~~eI 435 (535)
......|.++ +..++|+..+.-.|..|+.+++....+. ......++++|||||+|.++. |..+ ..+|
T Consensus 127 ~~a~~~I~~~-~~~L~Lp~~v~d~A~~lyk~a~~~~~~r-Grs~e~vaAAclYiACR~~~~-prtl~eI~~~~~v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITML-CDAAELPKIVKDCAKEAYKLCHDEKTLK-GKSMESIMAASILIGCRRAEV-ARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp THHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHTTCTTTT-TCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhcCCcc-CCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhCCCHHHH
Confidence 4556678889 9999999999999999999999988886 677899999999999998875 3322 7788
Q ss_pred HHHHHHHHHHcCcc------------ccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHH
Q 045573 436 VAMEWLVQEVLNFQ------------CFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVI 503 (535)
Q Consensus 436 l~mE~~IL~tLdFd------------L~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~ 503 (535)
-++.+.|.+.|+.. +...+|.+|+..|...++...++...|..++..+..+.-....+|..|||||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIy 283 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHH
Confidence 89999999999974 677889999999999999999999999999999988776778999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHhCCCcCccc
Q 045573 504 LALLESHQDTSYHRVIEIHVRTKENDLP 531 (535)
Q Consensus 504 LA~~iL~~~~~W~~~Lq~lTGyt~~dL~ 531 (535)
+|..+.|. ..-...+...+|.++.-|+
T Consensus 284 lAa~l~g~-~~t~~eIa~v~~Vse~TIr 310 (345)
T 4bbr_M 284 LNILLFQI-PITAAKVGQTLQVTEGTIK 310 (345)
T ss_dssp ----------------------------
T ss_pred HHHHHhCC-CCCHHHHHHHHCCCHHHHH
Confidence 99998875 3334555566666554444
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.63 E-value=0.00015 Score=73.65 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=77.7
Q ss_pred HHHHhHhhccccccCchhHHHHHHHHHHHHHhcCc-cc-ccccchhhhhhHhhhhhhhhccCCCCc----------HHHH
Q 045573 368 MVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGF-FK-IKRNLQIVGVACLALATRIEENQPYNG----------RCEV 435 (535)
Q Consensus 368 LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~-V~-~~~~LQLVgiTCLfIASK~EE~~pp~~----------~~eI 435 (535)
+-+|+..+ ...-+++.+++-.|+.|+||+....+ +. .....+-+-++||.+|+|+-+-..... .+|+
T Consensus 77 I~~Yl~RI-~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~EL 155 (293)
T 2pmi_B 77 IFNYFIRL-TKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHEL 155 (293)
T ss_dssp HHHHHHHH-HHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHH
Confidence 55688888 78888999999999999999988532 21 256788889999999999977655543 9999
Q ss_pred HHHHHHHHHHcCccccCCCHHHHHHHHHHHh
Q 045573 436 VAMEWLVQEVLNFQCFLPTIYNFLWFYLKAA 466 (535)
Q Consensus 436 l~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l 466 (535)
..||+..|..|+|+|.+. +..|..+++...
T Consensus 156 N~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 156 NILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 999999999999998655 556776666654
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=94.19 E-value=0.095 Score=49.00 Aligned_cols=79 Identities=16% Similarity=-0.063 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCccccc
Q 045573 454 TIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDC 533 (535)
Q Consensus 454 TP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eC 533 (535)
..+.+|..+...++..+.+...|..+...++....+...++..+|+|||++|++..+. +.-...+...+|++..+|..|
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~-p~~l~di~~~~~v~~~~i~~~ 89 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV-PRTLDEIADIARVDKKEIGRS 89 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHCCCHHHHHHH
Confidence 3567889999999999999999999999998777777899999999999999999886 555566777788887776654
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=92.59 E-value=0.25 Score=46.44 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCccccc
Q 045573 455 IYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDC 533 (535)
Q Consensus 455 P~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eC 533 (535)
...+|..+...++..+.+...|..+....+....+..+++..+|+||+++|++.-+. +.-...+...++++..+|..+
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~~~~~~i~~~ 85 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSRISKKEIGRC 85 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHCCCHHHHHHH
Confidence 467888888889999999999999999998888888899999999999999999876 445566667777776665543
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=86.02 E-value=1.9 Score=44.36 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCcccc
Q 045573 453 PTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPD 532 (535)
Q Consensus 453 PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~e 532 (535)
-..+..|..+...++....+...|..+...++....+-..+...+||||||+|++..+. +.-...+..+++++..+|..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~v~~keigr 205 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhCCCHHHHHH
Confidence 44566778888888888899999999999888665566788999999999999998876 45556677788888877765
Q ss_pred cc
Q 045573 533 CI 534 (535)
Q Consensus 533 Ci 534 (535)
|.
T Consensus 206 ~~ 207 (345)
T 4bbr_M 206 TL 207 (345)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=84.69 E-value=2.2 Score=40.77 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccC-CcHHHHHHHHHHHHHHHcCCCC
Q 045573 455 IYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLS-YWPSTVAAALVILALLESHQDT 513 (535)
Q Consensus 455 P~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~-y~PS~IAAAaI~LA~~iL~~~~ 513 (535)
..++|......++....+..+|..+++-.+....+.. +.+..+|+|||++|.+.-+.+.
T Consensus 31 ~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~ 90 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV 90 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcc
Confidence 3567777777788888999999999998888888888 9999999999999999987533
No 24
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=79.83 E-value=4 Score=40.00 Aligned_cols=77 Identities=4% Similarity=-0.121 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC--CCcCcccc
Q 045573 456 YNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR--TKENDLPD 532 (535)
Q Consensus 456 ~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG--yt~~dL~e 532 (535)
.+|+.......+....+..+|..+++-.+....+-...+-.+|+||+++|.+.-+..++-...+..+++ |+.++|..
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~ 120 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQ 120 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHH
Confidence 345555566666777888899999998888777888899999999999999997764454556666663 66666544
No 25
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=75.49 E-value=7.2 Score=38.03 Aligned_cols=75 Identities=12% Similarity=-0.049 Sum_probs=51.3
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC--CCcCcccc
Q 045573 458 FLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR--TKENDLPD 532 (535)
Q Consensus 458 FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG--yt~~dL~e 532 (535)
|+.......+....+..+|..+++--+....+....+-.+|+||+++|.+.-+..++-...+..+++ |+.++|..
T Consensus 63 wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~ 139 (271)
T 2w96_A 63 WMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQ 139 (271)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHH
Confidence 3444444445556677777777777777667777889999999999999998764444445555553 66666543
No 26
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=74.93 E-value=4.2 Score=39.49 Aligned_cols=76 Identities=13% Similarity=-0.109 Sum_probs=52.7
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC--CCcCcccc
Q 045573 457 NFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR--TKENDLPD 532 (535)
Q Consensus 457 ~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG--yt~~dL~e 532 (535)
+|+.......+....+..+|..+++--+....+.....-.+|+||+++|.+.-+..++-...+..+++ |+.++|..
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~ 121 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR 121 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHH
Confidence 44555555556667777777777777666666666778899999999999998764444555666663 66666543
No 27
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=73.59 E-value=4.9 Score=38.93 Aligned_cols=76 Identities=11% Similarity=-0.028 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC--CCcCcccc
Q 045573 457 NFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR--TKENDLPD 532 (535)
Q Consensus 457 ~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG--yt~~dL~e 532 (535)
+|+.......+....+..+|..+++-.+..........-.+|+||+++|.+.-...++-...+..+++ |+.++|..
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 133 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELID 133 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHH
Confidence 44445555556677788888888888777766667788899999999999987654444455666654 66666543
No 28
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=73.36 E-value=12 Score=36.10 Aligned_cols=58 Identities=10% Similarity=-0.016 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCC
Q 045573 455 IYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQD 512 (535)
Q Consensus 455 P~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~ 512 (535)
..+||......++....+..+|..+++--+....+..+.+-.+|+||+++|.+.-+.+
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p 91 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQA 91 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCC
Confidence 4567777778888888999999999999988888999999999999999999997763
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=72.69 E-value=5.5 Score=38.52 Aligned_cols=76 Identities=9% Similarity=-0.025 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC--CCcCccc
Q 045573 456 YNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR--TKENDLP 531 (535)
Q Consensus 456 ~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG--yt~~dL~ 531 (535)
.+|+.......+....+..+|-.+++-.+............+|+||+++|.+.-...++-...+..+++ |+.++|.
T Consensus 56 vdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~ 133 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELI 133 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHH
Confidence 345555555666777888889999988887777778899999999999999987653443344444432 5555543
No 30
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=71.42 E-value=14 Score=35.47 Aligned_cols=57 Identities=9% Similarity=-0.122 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCC
Q 045573 456 YNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQD 512 (535)
Q Consensus 456 ~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~ 512 (535)
.+||......++....+..+|..+++-.+....+..+.+-.+|+||+++|.+.-+..
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~ 101 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETP 101 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccccc
Confidence 467777777888888999999999999988888889999999999999999987753
No 31
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=71.19 E-value=0.9 Score=46.51 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCccccc
Q 045573 455 IYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDC 533 (535)
Q Consensus 455 P~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eC 533 (535)
.+.+|..+...++....+...|..|...++....+-..+...||+||||+|++..+. +.-...+..+++++..+|..|
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~v~~keIgr~ 206 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIHVKTKEFGKT 206 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHCCCHHHHHHH
Confidence 456778888888888899999999999887766667788999999999999997665 455556667777777776554
No 32
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=69.62 E-value=15 Score=36.29 Aligned_cols=58 Identities=17% Similarity=-0.055 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCC
Q 045573 456 YNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDT 513 (535)
Q Consensus 456 ~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~ 513 (535)
.+||......++....+..+|..+++--+....+..+.+..||+||+++|.+.-+...
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~ 104 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGV 104 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhcccc
Confidence 3556666666778888999999999988888889999999999999999999876643
No 33
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=68.44 E-value=10 Score=38.92 Aligned_cols=58 Identities=16% Similarity=-0.055 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCC
Q 045573 455 IYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQD 512 (535)
Q Consensus 455 P~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~ 512 (535)
..+||......++....+..+|..+++-.+....+..+.+-.||+|||++|.+.-+..
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p 98 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQP 98 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 4566666666677788899999999999988888899999999999999999997763
No 34
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=67.60 E-value=7.6 Score=38.94 Aligned_cols=74 Identities=12% Similarity=-0.054 Sum_probs=47.2
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC--CCcCccc
Q 045573 458 FLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR--TKENDLP 531 (535)
Q Consensus 458 FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG--yt~~dL~ 531 (535)
||......++....+..+|-.+++--+....+....+-.+|+||+++|.+.-...++-...+..+++ |+.++|.
T Consensus 77 wl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~ 152 (306)
T 3g33_B 77 WMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLR 152 (306)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHH
T ss_pred HHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHH
Confidence 3444444445555666667666666666566677889999999999999986543333334455544 5555543
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=65.61 E-value=12 Score=37.90 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=46.4
Q ss_pred HHHHHHHHHhc--cChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCC
Q 045573 457 NFLWFYLKAAK--ADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQD 512 (535)
Q Consensus 457 ~FL~~fl~~l~--~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~ 512 (535)
.+|..+...++ ....+..+|..+++--+....+..+.|-.||+||+++|.+.-+.+
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~ 119 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFN 119 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCC
Confidence 34555566666 777888899999998888888999999999999999999987653
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=64.38 E-value=47 Score=32.40 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCccc--ccccchhhhhhHhhhhhhhhccCCCC
Q 045573 367 QMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFK--IKRNLQIVGVACLALATRIEENQPYN 430 (535)
Q Consensus 367 ~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~V~--~~~~LQLVgiTCLfIASK~EE~~pp~ 430 (535)
.|.+-|..+ +.+-+++..++--||.|--.|.-...-- +..+-|-||++||+||+- +...|.
T Consensus 14 ~M~nclr~L-~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae--~~~~Pi 76 (260)
T 3h4c_A 14 TMLNCMRGL-HKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAE--EAQQPL 76 (260)
T ss_dssp HHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH--HTTCCC
T ss_pred HHHHHHHHH-HhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHH--HcCCCc
Confidence 345556888 8889999999999999999888654322 356789999999999984 444343
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=63.81 E-value=12 Score=36.85 Aligned_cols=74 Identities=5% Similarity=-0.098 Sum_probs=46.9
Q ss_pred HHHHHHHhccChhhHHHHHHHHHHHhcc-ccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHh--CCCcCcccc
Q 045573 459 LWFYLKAAKADAGVDKKAKYLAVLALSD-HEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHV--RTKENDLPD 532 (535)
Q Consensus 459 L~~fl~~l~~d~~i~~lA~yLLelsLld-~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lT--Gyt~~dL~e 532 (535)
+.......+.......+|..+++--+.. ........-.+|+||+++|.+.-+..++-...+..++ .|+.++|..
T Consensus 57 l~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~ 133 (283)
T 1w98_B 57 LMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILT 133 (283)
T ss_dssp HHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHH
Confidence 3333344445556666666666655543 2455678899999999999999776444445555555 366666543
No 38
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=58.16 E-value=26 Score=35.47 Aligned_cols=80 Identities=13% Similarity=-0.013 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHhccChhhHHHHHHHHHH-Hhccccc--cCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcC
Q 045573 452 LPTIYNFLWFYLKAAKADAGVDKKAKYLAVL-ALSDHEH--LSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKEN 528 (535)
Q Consensus 452 ~PTP~~FL~~fl~~l~~d~~i~~lA~yLLel-sLld~~f--l~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~ 528 (535)
.++...|+..+++.......+.-.|.++++- ......+ ......-|-.+|+.+|.+.++....|...+..+.|++..
T Consensus 74 ~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ 153 (293)
T 2pmi_B 74 NISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCH 153 (293)
T ss_dssp SSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHH
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHH
Confidence 3456888888888887776666666555553 3323333 346788899999999999999888899999999999887
Q ss_pred ccc
Q 045573 529 DLP 531 (535)
Q Consensus 529 dL~ 531 (535)
+|.
T Consensus 154 ELN 156 (293)
T 2pmi_B 154 ELN 156 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=39.95 E-value=90 Score=30.26 Aligned_cols=75 Identities=13% Similarity=-0.053 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC--CCcCccc
Q 045573 457 NFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR--TKENDLP 531 (535)
Q Consensus 457 ~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG--yt~~dL~ 531 (535)
+|+.......+...++..+|-.+++--+..........-.+|++|+++|.+.-...++-...+..+++ |+.++|.
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~ 130 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLL 130 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHH
Confidence 34444444455666777777777776665556666778899999999999987664444455556654 5555543
Done!