Query 045579
Match_columns 104
No_of_seqs 231 out of 1310
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.9 5.4E-23 1.8E-27 118.0 7.8 84 15-100 5-89 (91)
2 1x4j_A Ring finger protein 38; 99.9 4.7E-22 1.6E-26 110.2 4.9 66 36-102 9-74 (75)
3 2ep4_A Ring finger protein 24; 99.8 2.1E-20 7E-25 103.2 6.1 55 47-102 12-66 (74)
4 2kiz_A E3 ubiquitin-protein li 99.8 3.2E-20 1.1E-24 101.1 6.2 55 46-101 10-64 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.8 7.3E-21 2.5E-25 99.4 3.1 52 48-99 3-54 (55)
6 2ect_A Ring finger protein 126 99.8 5.2E-20 1.8E-24 102.5 5.5 55 47-102 12-66 (78)
7 2ecm_A Ring finger and CHY zin 99.8 4.8E-19 1.6E-23 92.4 4.5 50 49-99 4-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.8 1.4E-19 4.7E-24 101.7 2.2 52 49-100 14-76 (81)
9 3ng2_A RNF4, snurf, ring finge 99.8 6.3E-19 2.1E-23 96.3 4.1 54 48-102 8-65 (71)
10 1v87_A Deltex protein 2; ring- 99.7 8.6E-19 3E-23 103.9 4.2 52 49-101 24-95 (114)
11 2ea6_A Ring finger protein 4; 99.7 1.3E-18 4.3E-23 94.5 4.3 52 48-100 13-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.7 2.2E-18 7.6E-23 101.2 4.5 50 49-99 36-100 (106)
13 2xeu_A Ring finger protein 4; 99.7 1.6E-18 5.4E-23 92.8 3.3 52 49-101 2-57 (64)
14 2djb_A Polycomb group ring fin 99.7 1.6E-17 5.6E-22 91.1 6.0 54 46-102 11-64 (72)
15 2ecn_A Ring finger protein 141 99.7 3.2E-18 1.1E-22 93.4 2.8 51 47-102 12-62 (70)
16 2ecy_A TNF receptor-associated 99.7 2.6E-17 8.7E-22 88.8 6.0 53 48-104 13-66 (66)
17 2d8s_A Cellular modulator of i 99.7 1.7E-17 5.9E-22 92.8 4.8 52 48-101 13-71 (80)
18 2ct2_A Tripartite motif protei 99.7 4.2E-17 1.4E-21 92.3 6.3 54 46-100 11-68 (88)
19 2d8t_A Dactylidin, ring finger 99.7 1.2E-17 4.1E-22 91.4 3.8 49 47-99 12-60 (71)
20 1chc_A Equine herpes virus-1 r 99.7 1.1E-17 3.8E-22 90.7 3.5 49 49-100 4-52 (68)
21 2yur_A Retinoblastoma-binding 99.7 4.8E-17 1.6E-21 89.7 5.3 53 47-102 12-66 (74)
22 2csy_A Zinc finger protein 183 99.7 1.1E-16 3.9E-21 89.5 5.7 48 48-99 13-60 (81)
23 4a0k_B E3 ubiquitin-protein li 99.7 6.6E-18 2.3E-22 100.6 0.2 50 49-99 47-111 (117)
24 4ayc_A E3 ubiquitin-protein li 99.7 4.7E-17 1.6E-21 99.5 3.6 48 49-100 52-99 (138)
25 2ysl_A Tripartite motif-contai 99.6 2.1E-16 7.2E-21 86.6 5.4 50 48-101 18-70 (73)
26 4ap4_A E3 ubiquitin ligase RNF 99.6 1.4E-16 4.6E-21 96.1 3.5 53 48-101 5-61 (133)
27 3lrq_A E3 ubiquitin-protein li 99.6 2E-16 6.9E-21 91.9 3.6 49 49-100 21-70 (100)
28 1t1h_A Gspef-atpub14, armadill 99.6 5.7E-16 1.9E-20 86.0 5.0 49 48-100 6-55 (78)
29 3ztg_A E3 ubiquitin-protein li 99.6 7.3E-16 2.5E-20 88.0 5.5 52 47-101 10-63 (92)
30 1g25_A CDK-activating kinase a 99.6 4.7E-16 1.6E-20 83.6 4.1 51 49-100 2-55 (65)
31 2ecw_A Tripartite motif-contai 99.6 1.6E-15 5.4E-20 85.1 5.8 49 48-100 17-71 (85)
32 3fl2_A E3 ubiquitin-protein li 99.6 8.9E-16 3E-20 92.2 4.5 49 48-100 50-99 (124)
33 2ecv_A Tripartite motif-contai 99.6 1.8E-15 6.1E-20 84.9 5.2 49 48-100 17-71 (85)
34 2y43_A E3 ubiquitin-protein li 99.6 8.2E-16 2.8E-20 89.0 3.8 49 49-100 21-69 (99)
35 2egp_A Tripartite motif-contai 99.6 2.9E-16 1E-20 87.2 1.5 49 48-100 10-65 (79)
36 2ckl_A Polycomb group ring fin 99.6 1.4E-15 4.6E-20 89.4 4.4 50 48-100 13-62 (108)
37 2ysj_A Tripartite motif-contai 99.6 2.5E-15 8.4E-20 80.2 5.0 44 47-94 17-63 (63)
38 3hct_A TNF receptor-associated 99.6 2.5E-15 8.6E-20 89.5 4.3 52 46-101 14-66 (118)
39 2ckl_B Ubiquitin ligase protei 99.6 1.7E-15 5.8E-20 94.9 3.6 51 48-101 52-103 (165)
40 2ecj_A Tripartite motif-contai 99.6 3.4E-15 1.2E-19 78.3 4.1 43 48-94 13-58 (58)
41 4ap4_A E3 ubiquitin ligase RNF 99.5 2E-15 6.8E-20 91.0 3.3 53 48-101 70-126 (133)
42 2ct0_A Non-SMC element 1 homol 99.5 4.2E-15 1.4E-19 81.8 4.2 50 47-99 12-63 (74)
43 1z6u_A NP95-like ring finger p 99.5 5.3E-15 1.8E-19 91.6 4.5 49 49-101 77-126 (150)
44 1jm7_A BRCA1, breast cancer ty 99.5 4.9E-15 1.7E-19 87.2 3.1 48 49-100 20-70 (112)
45 3l11_A E3 ubiquitin-protein li 99.5 1.7E-15 5.7E-20 89.8 0.6 48 48-99 13-61 (115)
46 2kr4_A Ubiquitin conjugation f 99.5 3.1E-14 1.1E-18 80.4 5.7 49 48-100 12-60 (85)
47 1rmd_A RAG1; V(D)J recombinati 99.5 1E-14 3.5E-19 86.5 3.9 48 49-100 22-70 (116)
48 1e4u_A Transcriptional repress 99.5 5.5E-14 1.9E-18 78.2 5.0 52 48-100 9-62 (78)
49 2vje_A E3 ubiquitin-protein li 99.5 1.6E-14 5.5E-19 77.5 2.7 49 49-100 7-57 (64)
50 2kre_A Ubiquitin conjugation f 99.4 8.9E-14 3E-18 80.7 4.6 49 48-100 27-75 (100)
51 1wgm_A Ubiquitin conjugation f 99.4 1.9E-13 6.6E-18 79.0 5.7 49 48-100 20-69 (98)
52 2y1n_A E3 ubiquitin-protein li 99.4 2.1E-13 7.2E-18 95.1 6.9 47 50-100 332-379 (389)
53 3knv_A TNF receptor-associated 99.4 3.6E-14 1.2E-18 87.0 2.8 48 47-98 28-76 (141)
54 2vje_B MDM4 protein; proto-onc 99.4 4.3E-14 1.5E-18 75.6 2.6 50 49-100 6-56 (63)
55 1bor_A Transcription factor PM 99.4 3.6E-14 1.2E-18 74.1 1.7 47 48-101 4-50 (56)
56 4ic3_A E3 ubiquitin-protein li 99.4 6.5E-14 2.2E-18 77.1 1.6 44 49-100 23-67 (74)
57 3hcs_A TNF receptor-associated 99.4 1.8E-13 6E-18 86.0 3.7 52 46-101 14-66 (170)
58 1jm7_B BARD1, BRCA1-associated 99.4 4.6E-14 1.6E-18 83.9 0.7 45 49-99 21-66 (117)
59 3k1l_B Fancl; UBC, ring, RWD, 99.3 3.7E-13 1.3E-17 92.4 2.4 52 48-99 306-372 (381)
60 2yu4_A E3 SUMO-protein ligase 99.3 1.1E-12 3.8E-17 75.2 3.6 47 48-97 5-59 (94)
61 2c2l_A CHIP, carboxy terminus 99.3 2.8E-12 9.4E-17 85.5 4.9 50 47-100 205-255 (281)
62 2ecg_A Baculoviral IAP repeat- 99.3 1.1E-12 3.7E-17 72.3 2.3 44 49-100 24-68 (75)
63 1vyx_A ORF K3, K3RING; zinc-bi 99.3 3.9E-12 1.4E-16 67.2 4.3 48 48-99 4-58 (60)
64 1wim_A KIAA0161 protein; ring 99.3 3E-12 1E-16 73.3 3.2 48 49-97 4-61 (94)
65 2ea5_A Cell growth regulator w 99.2 9.2E-12 3.1E-16 67.4 4.3 45 48-100 13-58 (68)
66 2f42_A STIP1 homology and U-bo 99.2 1.1E-11 3.9E-16 78.5 4.4 51 46-100 102-153 (179)
67 2yho_A E3 ubiquitin-protein li 99.2 2.8E-12 9.5E-17 71.4 1.3 43 49-99 17-60 (79)
68 3htk_C E3 SUMO-protein ligase 99.1 6.2E-11 2.1E-15 78.8 3.3 49 48-99 179-231 (267)
69 3t6p_A Baculoviral IAP repeat- 99.1 2.8E-11 9.7E-16 83.6 1.3 44 49-100 294-338 (345)
70 2bay_A PRE-mRNA splicing facto 99.0 1.8E-10 6E-15 61.0 2.5 48 50-101 3-51 (61)
71 3vk6_A E3 ubiquitin-protein li 98.9 5.9E-10 2E-14 63.8 2.9 48 52-102 3-51 (101)
72 3nw0_A Non-structural maintena 98.4 1.2E-07 4E-12 62.6 2.5 48 49-99 179-228 (238)
73 2ko5_A Ring finger protein Z; 97.4 6.6E-05 2.3E-09 42.3 2.1 47 48-100 26-73 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 97.4 0.00012 4.1E-09 41.7 3.0 34 49-83 2-35 (101)
75 2lri_C Autoimmune regulator; Z 96.6 0.0017 5.9E-08 34.3 3.0 48 48-99 10-61 (66)
76 1we9_A PHD finger family prote 96.5 0.00084 2.9E-08 35.2 1.1 52 48-99 4-60 (64)
77 2vpb_A Hpygo1, pygopus homolog 95.9 0.008 2.7E-07 31.6 3.1 35 48-82 6-41 (65)
78 3lqh_A Histone-lysine N-methyl 95.8 0.0036 1.2E-07 39.6 1.6 49 50-98 2-64 (183)
79 2l5u_A Chromodomain-helicase-D 95.6 0.0087 3E-07 31.0 2.4 46 48-97 9-58 (61)
80 2k16_A Transcription initiatio 95.4 0.0038 1.3E-07 33.6 0.7 51 48-99 16-70 (75)
81 1wil_A KIAA1045 protein; ring 95.3 0.022 7.6E-07 31.4 3.4 35 48-84 13-47 (89)
82 2kgg_A Histone demethylase jar 95.2 0.024 8.2E-07 28.3 3.2 44 52-95 4-52 (52)
83 1wep_A PHF8; structural genomi 94.9 0.029 9.8E-07 30.5 3.3 49 49-98 11-64 (79)
84 1f62_A Transcription factor WS 94.3 0.018 6.1E-07 28.5 1.3 44 52-96 2-49 (51)
85 2xb1_A Pygopus homolog 2, B-ce 94.2 0.033 1.1E-06 32.0 2.5 49 50-98 3-62 (105)
86 2puy_A PHD finger protein 21A; 94.0 0.0035 1.2E-07 32.3 -1.7 48 49-100 4-55 (60)
87 3v43_A Histone acetyltransfera 93.8 0.11 3.9E-06 29.9 4.4 34 49-82 4-42 (112)
88 1mm2_A MI2-beta; PHD, zinc fin 93.8 0.011 3.7E-07 30.7 -0.0 48 48-99 7-58 (61)
89 2ysm_A Myeloid/lymphoid or mix 93.8 0.014 4.9E-07 33.6 0.5 37 48-85 5-41 (111)
90 2l43_A N-teminal domain from h 93.8 0.031 1.1E-06 31.1 1.8 52 48-99 23-77 (88)
91 1wew_A DNA-binding family prot 93.6 0.042 1.4E-06 29.7 2.1 52 49-101 15-76 (78)
92 2ri7_A Nucleosome-remodeling f 93.5 0.026 8.9E-07 35.0 1.3 48 49-97 7-59 (174)
93 2cs3_A Protein C14ORF4, MY039 93.4 0.12 4E-06 28.3 3.6 40 48-87 13-52 (93)
94 3o36_A Transcription intermedi 93.3 0.022 7.5E-07 35.7 0.8 46 49-98 3-52 (184)
95 3u5n_A E3 ubiquitin-protein li 93.3 0.024 8.4E-07 36.2 1.0 46 49-98 6-55 (207)
96 3v43_A Histone acetyltransfera 93.0 0.019 6.4E-07 33.3 0.1 46 51-96 62-111 (112)
97 1wen_A Inhibitor of growth fam 93.0 0.12 4.2E-06 27.5 3.4 47 48-99 14-67 (71)
98 1weu_A Inhibitor of growth fam 92.9 0.08 2.7E-06 29.6 2.6 47 48-99 34-87 (91)
99 1fp0_A KAP-1 corepressor; PHD 92.8 0.054 1.8E-06 30.2 1.8 47 48-98 23-73 (88)
100 3asl_A E3 ubiquitin-protein li 92.6 0.018 6.2E-07 30.6 -0.3 45 52-97 20-69 (70)
101 2yt5_A Metal-response element- 92.6 0.071 2.4E-06 27.7 2.1 52 48-99 4-63 (66)
102 2e6s_A E3 ubiquitin-protein li 92.5 0.019 6.6E-07 31.2 -0.3 44 52-96 28-76 (77)
103 2e6r_A Jumonji/ARID domain-con 92.5 0.013 4.4E-07 32.9 -1.0 49 48-97 14-66 (92)
104 3m62_A Ubiquitin conjugation f 92.5 0.15 5.2E-06 39.6 4.4 49 48-100 889-938 (968)
105 2yql_A PHD finger protein 21A; 92.4 0.015 5E-07 29.5 -0.8 45 48-96 7-55 (56)
106 2lv9_A Histone-lysine N-methyl 92.3 0.048 1.6E-06 30.9 1.2 47 49-97 27-76 (98)
107 1xwh_A Autoimmune regulator; P 92.2 0.018 6.2E-07 30.2 -0.6 47 48-98 6-56 (66)
108 1z60_A TFIIH basal transcripti 92.0 0.094 3.2E-06 27.0 1.9 43 51-94 16-58 (59)
109 1wem_A Death associated transc 91.9 0.1 3.5E-06 27.9 2.2 48 50-99 16-72 (76)
110 3o70_A PHD finger protein 13; 91.8 0.032 1.1E-06 29.5 0.1 48 48-97 17-67 (68)
111 2ku3_A Bromodomain-containing 91.8 0.27 9.2E-06 26.1 3.8 50 48-97 14-66 (71)
112 1weo_A Cellulose synthase, cat 91.4 0.64 2.2E-05 25.9 5.0 51 49-99 15-69 (93)
113 3t7l_A Zinc finger FYVE domain 91.3 0.21 7.3E-06 27.7 3.2 37 49-85 19-55 (90)
114 2rsd_A E3 SUMO-protein ligase 91.3 0.022 7.7E-07 30.0 -0.9 48 49-97 9-65 (68)
115 3ql9_A Transcriptional regulat 91.2 0.26 8.8E-06 29.3 3.6 45 49-97 56-111 (129)
116 2kwj_A Zinc finger protein DPF 90.9 0.078 2.7E-06 30.7 1.1 34 51-84 2-41 (114)
117 2lbm_A Transcriptional regulat 90.6 0.45 1.6E-05 28.7 4.4 46 48-97 61-117 (142)
118 1vfy_A Phosphatidylinositol-3- 90.6 0.2 6.9E-06 26.6 2.5 35 50-84 11-45 (73)
119 2kwj_A Zinc finger protein DPF 90.4 0.018 6E-07 33.5 -2.0 49 52-101 60-112 (114)
120 1joc_A EEA1, early endosomal a 90.2 0.19 6.6E-06 29.6 2.4 36 49-84 68-103 (125)
121 2yw8_A RUN and FYVE domain-con 89.9 0.25 8.7E-06 26.8 2.6 36 49-84 18-53 (82)
122 1wfk_A Zinc finger, FYVE domai 89.8 0.37 1.3E-05 26.6 3.3 37 48-84 7-43 (88)
123 1z2q_A LM5-1; membrane protein 89.8 0.29 1E-05 26.7 2.8 37 48-84 19-55 (84)
124 1zbd_B Rabphilin-3A; G protein 89.5 0.23 8E-06 29.7 2.4 36 48-83 53-89 (134)
125 1y02_A CARP2, FYVE-ring finger 89.3 0.045 1.5E-06 32.2 -0.8 48 49-96 18-65 (120)
126 2vnf_A ING 4, P29ING4, inhibit 88.9 0.12 4.1E-06 26.5 0.7 43 49-96 9-58 (60)
127 3c6w_A P28ING5, inhibitor of g 88.8 0.13 4.6E-06 26.2 0.9 43 49-96 8-57 (59)
128 3ask_A E3 ubiquitin-protein li 88.8 0.089 3E-06 34.3 0.2 46 51-97 175-225 (226)
129 1x4u_A Zinc finger, FYVE domai 87.9 0.37 1.2E-05 26.3 2.3 35 49-83 13-47 (84)
130 3zyq_A Hepatocyte growth facto 87.6 0.29 9.9E-06 31.7 2.1 37 48-84 162-198 (226)
131 3shb_A E3 ubiquitin-protein li 87.5 0.052 1.8E-06 29.4 -1.3 44 52-96 28-76 (77)
132 1dvp_A HRS, hepatocyte growth 87.4 0.51 1.7E-05 30.2 3.2 37 48-84 159-195 (220)
133 2ro1_A Transcription intermedi 87.3 0.092 3.2E-06 33.1 -0.4 45 50-98 2-50 (189)
134 3mjh_B Early endosome antigen 87.0 0.19 6.4E-06 22.9 0.7 16 49-64 4-19 (34)
135 1wee_A PHD finger family prote 86.9 0.4 1.4E-05 25.3 2.1 51 48-99 14-68 (72)
136 2gmg_A Hypothetical protein PF 86.3 0.11 3.7E-06 29.9 -0.4 26 72-102 73-98 (105)
137 2jvx_A NF-kappa-B essential mo 86.3 0.09 3.1E-06 22.9 -0.6 14 88-101 3-16 (28)
138 4gne_A Histone-lysine N-methyl 86.0 0.68 2.3E-05 26.6 2.8 45 48-98 13-63 (107)
139 2ysm_A Myeloid/lymphoid or mix 84.4 0.12 4.1E-06 29.6 -0.9 47 52-99 56-106 (111)
140 3o7a_A PHD finger protein 13 v 84.3 0.12 4.1E-06 25.6 -0.8 41 55-96 8-51 (52)
141 1wev_A Riken cDNA 1110020M19; 84.2 0.47 1.6E-05 26.1 1.6 51 49-99 15-74 (88)
142 3fyb_A Protein of unknown func 84.1 0.48 1.6E-05 26.8 1.5 11 76-86 42-52 (104)
143 2o35_A Hypothetical protein DU 83.9 0.49 1.7E-05 26.8 1.5 11 76-86 43-53 (105)
144 2g6q_A Inhibitor of growth pro 83.7 0.24 8.3E-06 25.5 0.2 46 49-97 10-60 (62)
145 3mpx_A FYVE, rhogef and PH dom 82.8 0.24 8.3E-06 34.6 0.0 50 49-98 374-430 (434)
146 2cu8_A Cysteine-rich protein 2 82.5 0.77 2.6E-05 24.0 1.9 41 49-100 8-48 (76)
147 4fo9_A E3 SUMO-protein ligase 82.3 1.6 5.3E-05 30.4 3.8 46 50-99 215-265 (360)
148 3i2d_A E3 SUMO-protein ligase 82.3 1.5 5.2E-05 30.6 3.8 46 50-99 249-299 (371)
149 2co8_A NEDD9 interacting prote 80.9 1 3.4E-05 24.1 2.1 41 49-100 14-54 (82)
150 2zet_C Melanophilin; complex, 79.8 1.2 4.2E-05 27.1 2.4 46 49-96 67-116 (153)
151 1zfo_A LAsp-1; LIM domain, zin 79.7 0.62 2.1E-05 20.4 0.8 27 51-80 4-30 (31)
152 2dj7_A Actin-binding LIM prote 77.5 1.3 4.5E-05 23.5 1.9 40 49-99 14-53 (80)
153 2d8v_A Zinc finger FYVE domain 77.2 2 6.8E-05 22.5 2.3 32 48-84 6-38 (67)
154 2d8y_A Eplin protein; LIM doma 77.1 2.6 9E-05 22.7 3.1 29 50-81 15-43 (91)
155 1wyh_A SLIM 2, skeletal muscle 76.6 1.3 4.4E-05 22.7 1.6 39 51-99 6-44 (72)
156 2jmo_A Parkin; IBR, E3 ligase, 76.4 0.15 5.2E-06 27.6 -2.2 20 71-92 55-74 (80)
157 2a20_A Regulating synaptic mem 76.2 0.17 5.7E-06 26.0 -1.9 49 47-96 6-59 (62)
158 3kqi_A GRC5, PHD finger protei 75.5 3.3 0.00011 21.8 3.1 46 52-97 11-61 (75)
159 1x4k_A Skeletal muscle LIM-pro 75.3 0.99 3.4E-05 23.2 0.9 39 51-99 6-44 (72)
160 3a1b_A DNA (cytosine-5)-methyl 74.4 4.1 0.00014 25.0 3.6 33 49-85 78-112 (159)
161 1g47_A Pinch protein; LIM doma 74.4 1 3.6E-05 23.4 0.9 42 49-100 10-51 (77)
162 1x61_A Thyroid receptor intera 74.2 1.5 5E-05 22.5 1.4 34 50-86 33-66 (72)
163 2ct7_A Ring finger protein 31; 73.3 0.24 8.4E-06 27.1 -1.9 32 53-84 28-61 (86)
164 3f6q_B LIM and senescent cell 72.6 1.9 6.6E-05 21.9 1.7 42 49-100 10-51 (72)
165 1x63_A Skeletal muscle LIM-pro 72.5 1.8 6.1E-05 22.8 1.6 41 50-100 15-55 (82)
166 1a7i_A QCRP2 (LIM1); LIM domai 72.4 0.77 2.6E-05 24.3 0.0 39 50-99 7-45 (81)
167 1v6g_A Actin binding LIM prote 71.1 1.6 5.4E-05 23.1 1.1 37 51-99 16-52 (81)
168 2d8x_A Protein pinch; LIM doma 70.6 2.5 8.6E-05 21.5 1.8 37 51-99 6-42 (70)
169 2jne_A Hypothetical protein YF 70.3 1.5 5.1E-05 24.8 0.9 40 51-99 33-72 (101)
170 3kv4_A PHD finger protein 8; e 70.2 1.2 4.2E-05 31.7 0.7 48 51-98 5-57 (447)
171 1x4l_A Skeletal muscle LIM-pro 70.1 2.3 7.9E-05 21.8 1.6 40 50-99 5-46 (72)
172 1iml_A CRIP, cysteine rich int 69.8 1 3.5E-05 23.5 0.2 44 48-96 25-69 (76)
173 1nyp_A Pinch protein; LIM doma 69.6 1.3 4.3E-05 22.4 0.5 39 50-100 5-43 (66)
174 1wd2_A Ariadne-1 protein homol 69.3 0.34 1.2E-05 24.8 -1.8 37 50-86 6-46 (60)
175 2cor_A Pinch protein; LIM doma 68.4 2.4 8.4E-05 22.3 1.5 39 49-99 14-52 (79)
176 2pv0_B DNA (cytosine-5)-methyl 67.6 5.1 0.00017 28.1 3.3 32 50-85 93-126 (386)
177 2xjy_A Rhombotin-2; oncoprotei 66.4 4.6 0.00016 23.2 2.6 50 49-100 28-78 (131)
178 1x68_A FHL5 protein; four-and- 66.0 2.9 9.7E-05 21.7 1.5 39 50-99 5-46 (76)
179 2l3k_A Rhombotin-2, linker, LI 65.8 1.3 4.5E-05 25.5 0.1 36 48-85 34-69 (123)
180 1x64_A Alpha-actinin-2 associa 65.7 4.2 0.00014 21.8 2.2 41 48-100 23-63 (89)
181 2jrp_A Putative cytoplasmic pr 65.3 3.1 0.00011 22.6 1.5 15 51-65 3-17 (81)
182 2l4z_A DNA endonuclease RBBP8, 64.7 5 0.00017 23.2 2.5 39 50-99 61-99 (123)
183 2kpi_A Uncharacterized protein 64.1 2.7 9.2E-05 21.1 1.1 28 49-76 9-38 (56)
184 1rut_X Flinc4, fusion protein 63.3 3.8 0.00013 25.3 1.9 26 73-98 54-79 (188)
185 3kv5_D JMJC domain-containing 61.9 7.5 0.00026 28.0 3.4 48 49-97 36-88 (488)
186 1x62_A C-terminal LIM domain p 60.7 6.4 0.00022 20.5 2.3 39 49-99 14-52 (79)
187 2jmi_A Protein YNG1, ING1 homo 60.5 3.6 0.00012 22.8 1.2 46 48-96 24-75 (90)
188 1m3v_A FLIN4, fusion of the LI 59.3 5.7 0.00019 22.7 2.0 50 49-100 31-81 (122)
189 2dar_A PDZ and LIM domain prot 59.0 5.1 0.00018 21.5 1.7 39 49-99 24-62 (90)
190 2rgt_A Fusion of LIM/homeobox 58.9 4.3 0.00015 24.6 1.5 44 49-98 32-75 (169)
191 2pk7_A Uncharacterized protein 58.8 1.6 5.6E-05 22.9 -0.4 17 83-99 3-19 (69)
192 2ehe_A Four and A half LIM dom 58.7 4.2 0.00014 21.3 1.3 40 50-99 15-54 (82)
193 1wig_A KIAA1808 protein; LIM d 58.6 4.4 0.00015 20.9 1.3 10 51-60 32-41 (73)
194 2cur_A Skeletal muscle LIM-pro 58.3 5.4 0.00018 20.1 1.7 9 52-60 7-15 (69)
195 2lq6_A Bromodomain-containing 56.9 4.9 0.00017 22.0 1.4 34 50-84 17-51 (87)
196 2d8z_A Four and A half LIM dom 56.6 4.2 0.00014 20.6 1.0 11 51-61 6-16 (70)
197 2csz_A Synaptotagmin-like prot 56.4 5.7 0.0002 21.3 1.5 36 47-82 22-58 (76)
198 2egq_A FHL1 protein; LIM domai 55.6 5.1 0.00018 20.7 1.3 40 50-100 15-58 (77)
199 2cup_A Skeletal muscle LIM-pro 55.3 5.1 0.00017 21.8 1.3 47 49-100 32-78 (101)
200 2jny_A Uncharacterized BCR; st 54.8 1.5 5.2E-05 22.9 -0.9 17 83-99 5-21 (67)
201 2xqn_T Testin, TESS; metal-bin 52.9 18 0.0006 20.5 3.5 48 48-100 28-75 (126)
202 3vhs_A ATPase wrnip1; zinc fin 50.1 3.5 0.00012 17.3 0.0 9 90-98 8-16 (29)
203 2dlo_A Thyroid receptor-intera 48.6 6.5 0.00022 20.5 1.0 38 50-99 15-52 (81)
204 1x3h_A Leupaxin; paxillin fami 47.4 7 0.00024 20.3 1.0 38 51-100 16-53 (80)
205 3c5k_A HD6, histone deacetylas 47.1 20 0.00068 20.4 3.0 24 50-77 24-47 (109)
206 1yuz_A Nigerythrin; rubrythrin 47.1 3.6 0.00012 26.1 -0.2 21 71-98 176-196 (202)
207 1b8t_A Protein (CRP1); LIM dom 46.6 7.1 0.00024 24.1 1.1 27 51-80 8-34 (192)
208 2vrw_B P95VAV, VAV1, proto-onc 46.1 13 0.00044 25.6 2.5 36 48-83 355-391 (406)
209 1j2o_A FLIN2, fusion of rhombo 46.0 9.5 0.00032 21.4 1.5 38 48-87 28-66 (114)
210 1loi_A Cyclic 3',5'-AMP specif 44.9 0.58 2E-05 19.2 -2.7 11 75-85 6-16 (26)
211 1wff_A Riken cDNA 2810002D23 p 44.8 17 0.00058 19.9 2.3 31 47-79 22-52 (85)
212 2lcq_A Putative toxin VAPC6; P 43.5 5.2 0.00018 24.2 0.1 23 71-99 137-159 (165)
213 2jtn_A LIM domain-binding prot 43.3 6.1 0.00021 24.2 0.4 47 48-100 85-131 (182)
214 2iyb_E Testin, TESS, TES; LIM 42.4 7.6 0.00026 19.4 0.6 38 51-99 3-43 (65)
215 2hf1_A Tetraacyldisaccharide-1 40.2 1.6 5.5E-05 22.9 -2.2 11 89-99 9-19 (68)
216 1lko_A Rubrerythrin all-iron(I 38.5 12 0.00039 23.4 1.1 21 71-97 160-180 (191)
217 2cuq_A Four and A half LIM dom 38.3 11 0.00036 19.5 0.8 27 51-81 16-42 (80)
218 1wvk_A AT2G23090/F21P24.15; st 37.1 6.7 0.00023 21.5 -0.1 13 48-60 43-55 (86)
219 2ku7_A MLL1 PHD3-CYP33 RRM chi 37.0 30 0.001 19.5 2.8 27 71-97 7-44 (140)
220 1l8d_A DNA double-strand break 36.8 8.7 0.0003 21.6 0.3 12 88-99 47-58 (112)
221 2jr6_A UPF0434 protein NMA0874 35.2 7.2 0.00025 20.3 -0.2 15 85-99 5-19 (68)
222 4bbq_A Lysine-specific demethy 34.8 11 0.00038 21.3 0.6 46 52-97 61-114 (117)
223 1lv3_A Hypothetical protein YA 32.6 11 0.00039 19.7 0.3 11 89-99 10-20 (68)
224 2vqe_R 30S ribosomal protein S 32.2 18 0.00062 19.8 1.1 15 87-101 18-32 (88)
225 2i50_A Ubiquitin carboxyl-term 32.1 12 0.0004 21.9 0.4 27 71-97 6-37 (126)
226 2fiy_A Protein FDHE homolog; F 31.7 1.6 5.5E-05 29.6 -3.9 48 48-97 180-231 (309)
227 2js4_A UPF0434 protein BB2007; 31.0 7.7 0.00026 20.3 -0.5 13 87-99 7-19 (70)
228 2ctu_A Zinc finger protein 483 27.2 23 0.00077 17.1 0.9 16 49-64 17-32 (73)
229 6rxn_A Rubredoxin; electron tr 27.0 19 0.00066 17.2 0.6 8 90-97 32-39 (46)
230 2i5o_A DNA polymerase ETA; zin 26.7 12 0.00042 17.2 -0.1 10 90-99 11-20 (39)
231 1x4i_A Inhibitor of growth pro 26.4 65 0.0022 16.5 2.7 46 50-98 6-56 (70)
232 2g45_A Ubiquitin carboxyl-term 24.0 84 0.0029 18.3 3.1 24 50-77 34-57 (129)
233 2ffw_A Midline-1; B-BOX, ring 23.4 88 0.003 16.2 4.1 35 48-83 28-62 (78)
234 4rxn_A Rubredoxin; electron tr 23.2 25 0.00085 17.4 0.6 8 90-97 38-45 (54)
235 2bai_A Genome polyprotein; zin 22.2 19 0.00063 15.7 -0.0 7 90-96 18-24 (32)
236 1pft_A TFIIB, PFTFIIBN; N-term 22.0 74 0.0025 14.8 2.4 27 50-77 5-35 (50)
237 3pwf_A Rubrerythrin; non heme 21.7 45 0.0015 20.4 1.7 22 69-97 141-162 (170)
238 3a43_A HYPD, hydrogenase nicke 21.2 39 0.0013 19.9 1.3 20 20-39 32-51 (139)
239 2lvu_A Zinc finger and BTB dom 26.6 20 0.00069 13.2 0.0 6 91-96 5-10 (26)
240 1e8j_A Rubredoxin; iron-sulfur 21.0 29 0.00099 16.9 0.6 8 90-97 38-45 (52)
241 1yk4_A Rubredoxin, RD; electro 20.9 29 0.001 16.9 0.6 8 90-97 37-44 (52)
242 2v3b_B Rubredoxin 2, rubredoxi 20.9 29 0.00099 17.1 0.6 8 90-97 38-45 (55)
243 2roo_A Neurotoxin MAGI-4; spid 20.6 2.5 8.5E-05 19.8 -3.2 14 79-92 19-32 (43)
244 2kdx_A HYPA, hydrogenase/ureas 20.4 56 0.0019 18.5 1.8 66 19-98 33-100 (119)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.89 E-value=5.4e-23 Score=117.99 Aligned_cols=84 Identities=24% Similarity=0.587 Sum_probs=70.4
Q ss_pred CCCcccccccCCCCHHHHHhhCCccccCCCC-CCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcc
Q 045579 15 NDSDLEVGERQGLGDEALEQLMPCVNYSDQE-MTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPV 93 (104)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~ 93 (104)
.+.........|++++.+.. +|.+.+.... ....+..|+||++.|..++.+..+| |||.||..||..|+..+.+||+
T Consensus 5 ~~~~~~~~~~~~~s~~~i~~-lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~ 82 (91)
T 2l0b_A 5 HHHHSHMVANPPASKESIDA-LPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPV 82 (91)
T ss_dssp CCCSCCSSCCCCCCHHHHHT-SCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTT
T ss_pred cccCCCCcCCCCCCHHHHHh-CCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcC
Confidence 34455566778999999988 6877776544 3356788999999999999899999 9999999999999999999999
Q ss_pred ccccccC
Q 045579 94 CRISCID 100 (104)
Q Consensus 94 CR~~~~~ 100 (104)
||..+..
T Consensus 83 Cr~~~~~ 89 (91)
T 2l0b_A 83 CRCMFPP 89 (91)
T ss_dssp TCCBSSC
T ss_pred cCccCCC
Confidence 9998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.7e-22 Score=110.18 Aligned_cols=66 Identities=30% Similarity=0.820 Sum_probs=58.1
Q ss_pred CCccccCCCCCCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCCC
Q 045579 36 MPCVNYSDQEMTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDIE 102 (104)
Q Consensus 36 ~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 102 (104)
+|...+.......+...|+||++.|..++.+..+| |+|.||..||.+|+..+.+||+||+.+....
T Consensus 9 lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred CCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 67777776666667889999999999998889999 9999999999999999999999999987653
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=103.19 Aligned_cols=55 Identities=27% Similarity=0.826 Sum_probs=49.7
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCCC
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDIE 102 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 102 (104)
......|+||++.|..+..+.+++ |+|.||..||.+|+..+.+||+||+.+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 345778999999999988888898 9999999999999998899999999997654
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=101.13 Aligned_cols=55 Identities=38% Similarity=0.946 Sum_probs=48.7
Q ss_pred CCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCC
Q 045579 46 MTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDI 101 (104)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 101 (104)
.......|+||++.|..+..++.++ |||.||..||..|+..+.+||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3356778999999998888888998 999999999999999999999999998643
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.81 E-value=7.3e-21 Score=99.40 Aligned_cols=52 Identities=40% Similarity=1.016 Sum_probs=46.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
+++..|+||++.|..++.+..++.|||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999998888888779999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=5.2e-20 Score=102.50 Aligned_cols=55 Identities=42% Similarity=0.899 Sum_probs=49.2
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCCC
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDIE 102 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 102 (104)
......|+||++.|..+..+.+++ |+|.||..||.+|+..+.+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 356779999999999888888898 9999999999999998899999999987543
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.76 E-value=4.8e-19 Score=92.36 Aligned_cols=50 Identities=32% Similarity=0.747 Sum_probs=43.3
Q ss_pred CccccccccccccCC-CcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDG-ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
....|+||++.|..+ ..+.+++ |||.||..||.+|+....+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999998654 4566777 9999999999999998899999999875
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-19 Score=101.68 Aligned_cols=52 Identities=25% Similarity=0.762 Sum_probs=42.1
Q ss_pred CccccccccccccC-----------CCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVD-----------GESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
++..|+||++.|.. ++.+++++.|+|.||.+||.+||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 46678888888854 34455555599999999999999999999999998753
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.75 E-value=6.3e-19 Score=96.31 Aligned_cols=54 Identities=26% Similarity=0.532 Sum_probs=45.9
Q ss_pred CCccccccccccccCC----CcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCCC
Q 045579 48 PSSNYCVICLENFVDG----ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDIE 102 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 102 (104)
.++..|+||++.|..+ ..++.++ |||.||..||.+|+..+.+||+||+.+...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4577899999998753 4556777 9999999999999999999999999987543
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.75 E-value=8.6e-19 Score=103.90 Aligned_cols=52 Identities=27% Similarity=0.635 Sum_probs=42.0
Q ss_pred CccccccccccccCCC---------------cEEecCCCCCcccHHhHHHHH-----hcCCCCccccccccCC
Q 045579 49 SSNYCVICLENFVDGE---------------SCRLFPVCYRIFHSVCIDQWL-----KEHLTCPVCRISCIDI 101 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~~~~~ 101 (104)
.+..|+|||+.|..+. .+.+++ |+|.||..||..|+ ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 344677 99999999999999 4567899999988643
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=94.49 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=44.4
Q ss_pred CCccccccccccccCC----CcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDG----ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.....|+||++.|..+ ..+++++ |||.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 5678899999998753 3456777 99999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.73 E-value=2.2e-18 Score=101.17 Aligned_cols=50 Identities=28% Similarity=0.580 Sum_probs=42.8
Q ss_pred CccccccccccccCCC---------------cEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGE---------------SCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
.+..|+||++.|.... .++.++ |+|.||..||.+||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678999999997651 356677 9999999999999999999999999853
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.73 E-value=1.6e-18 Score=92.83 Aligned_cols=52 Identities=27% Similarity=0.533 Sum_probs=44.3
Q ss_pred CccccccccccccCC----CcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCC
Q 045579 49 SSNYCVICLENFVDG----ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDI 101 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 101 (104)
++..|+||++.|..+ ..+..++ |||.||..||.+|+..+.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999998753 4556777 999999999999999999999999998754
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=91.08 Aligned_cols=54 Identities=22% Similarity=0.494 Sum_probs=44.6
Q ss_pred CCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCCC
Q 045579 46 MTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDIE 102 (104)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 102 (104)
.......|+||++.|.. .+.+++ |||.||..||..|+..+.+||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 33567899999999876 344446 9999999999999998999999999986543
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-18 Score=93.35 Aligned_cols=51 Identities=31% Similarity=0.874 Sum_probs=44.1
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCCC
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDIE 102 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 102 (104)
......|+||++.+.. +.++ |||.||..||..|+....+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3457789999999866 5677 9999999999999999999999999987554
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=88.85 Aligned_cols=53 Identities=17% Similarity=0.382 Sum_probs=44.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHH-hcCCCCccccccccCCCCC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL-KEHLTCPVCRISCIDIENY 104 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~~~~~~ 104 (104)
.+...|+||++.+..+.. ++ |||.||..||..|+ ....+||+||+.+...+.|
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~if 66 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTCC
T ss_pred CcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhcC
Confidence 567899999999876533 56 99999999999999 4567899999999877765
No 17
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=92.83 Aligned_cols=52 Identities=29% Similarity=0.674 Sum_probs=43.7
Q ss_pred CCccccccccccccCCCcEEecCCCC-----CcccHHhHHHHHhcC--CCCccccccccCC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCY-----RIFHSVCIDQWLKEH--LTCPVCRISCIDI 101 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~~--~~CP~CR~~~~~~ 101 (104)
..+..|.||+++|..++.+ ++| |+ |.||.+||.+||..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4567899999999877766 588 96 999999999999755 5899999998643
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=92.32 Aligned_cols=54 Identities=22% Similarity=0.522 Sum_probs=45.1
Q ss_pred CCCCccccccccccccCCCc-EEecCCCCCcccHHhHHHHHhcC---CCCccccccccC
Q 045579 46 MTPSSNYCVICLENFVDGES-CRLFPVCYRIFHSVCIDQWLKEH---LTCPVCRISCID 100 (104)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~CR~~~~~ 100 (104)
.......|+||++.|...+. .++++ |||.||..||..|+..+ .+||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 33567889999999987664 66777 99999999999999765 789999998753
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=91.37 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=42.4
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
......|+||++.|.. .+.++ |||.||..||..|+....+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3467789999999865 35567 9999999999999998899999999875
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.69 E-value=1.1e-17 Score=90.66 Aligned_cols=49 Identities=33% Similarity=0.892 Sum_probs=42.6
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.+..|+||++.+.. .+..++ |||.||..||..|+..+.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 46789999999865 356778 99999999999999989999999998864
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=89.69 Aligned_cols=53 Identities=28% Similarity=0.649 Sum_probs=43.1
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC--CCCccccccccCCC
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH--LTCPVCRISCIDIE 102 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~~~~~ 102 (104)
......|+||++.|..+ ++++.|||.||..||..|+..+ .+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 35678999999998763 3355599999999999999765 68999999876554
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=89.49 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=41.9
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
.....|+||++.|.. .++++ |||+||..||..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456789999999866 34577 9999999999999998999999999975
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.66 E-value=6.6e-18 Score=100.57 Aligned_cols=50 Identities=28% Similarity=0.580 Sum_probs=1.1
Q ss_pred CccccccccccccCCC---------------cEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGE---------------SCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
.+..|+||++.|.... .+..++ |+|.||..||.+||..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4678999999997531 233345 9999999999999999999999999864
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.66 E-value=4.7e-17 Score=99.51 Aligned_cols=48 Identities=33% Similarity=0.902 Sum_probs=41.7
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.+..|+||++.|.. .+++| |||.||..||..|+..+.+||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35679999999865 45677 99999999999999999999999998853
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=86.61 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=41.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHh---cCCCCccccccccCC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK---EHLTCPVCRISCIDI 101 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~CR~~~~~~ 101 (104)
.....|+||++.|.. .+.++ |||.||..||..|+. ...+||+||+.+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 567899999999875 45567 999999999999996 456899999998654
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.63 E-value=1.4e-16 Score=96.15 Aligned_cols=53 Identities=26% Similarity=0.540 Sum_probs=45.0
Q ss_pred CCccccccccccccCC----CcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCC
Q 045579 48 PSSNYCVICLENFVDG----ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDI 101 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 101 (104)
.+...|+||++.|..+ ..++.++ |||+||..||.+|+..+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999998764 4456777 999999999999999999999999988643
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=91.85 Aligned_cols=49 Identities=31% Similarity=0.659 Sum_probs=41.3
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC-CCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH-LTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~ 100 (104)
+...|+||++.|.. .+..++ |||.||..||..|+... .+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 46789999999865 343377 99999999999999877 699999999853
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.62 E-value=5.7e-16 Score=85.98 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc-CCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE-HLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~ 100 (104)
.....|+||++.|.. .++++ |||+||..||..|+.. ..+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 467899999999876 34467 9999999999999976 7889999998854
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=88.01 Aligned_cols=52 Identities=29% Similarity=0.644 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC--CCCccccccccCC
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH--LTCPVCRISCIDI 101 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~~~~ 101 (104)
..+...|+||++.|..+ ++++.|||.||..||..|+... .+||+||..+...
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 35678999999998763 3455499999999999999643 5899999997543
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.61 E-value=4.7e-16 Score=83.58 Aligned_cols=51 Identities=16% Similarity=0.353 Sum_probs=41.0
Q ss_pred Cccccccccc-cccCCCcE-EecCCCCCcccHHhHHHHHhc-CCCCccccccccC
Q 045579 49 SSNYCVICLE-NFVDGESC-RLFPVCYRIFHSVCIDQWLKE-HLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~-~~~~~~~~-~~lp~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~ 100 (104)
++..|+||++ .|..+... .+++ |||+||..||.+|+.. ..+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3568999999 77776543 3466 9999999999999754 5679999999864
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=85.09 Aligned_cols=49 Identities=29% Similarity=0.527 Sum_probs=41.6
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc------CCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE------HLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~CR~~~~~ 100 (104)
.....|+||++.|..+ .+++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4577899999998764 3577 9999999999999976 6789999998864
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.59 E-value=8.9e-16 Score=92.17 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=41.0
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCC-CCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHL-TCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~~~ 100 (104)
.....|+||++.|.. .+.++ |||.||..||..|+.... +||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346789999999875 44567 999999999999997544 89999999865
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=84.87 Aligned_cols=49 Identities=33% Similarity=0.617 Sum_probs=41.6
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc------CCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE------HLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~CR~~~~~ 100 (104)
.....|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4678999999998763 3467 9999999999999976 7789999998864
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.59 E-value=8.2e-16 Score=88.98 Aligned_cols=49 Identities=27% Similarity=0.615 Sum_probs=41.4
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
....|+||++.|.. .+.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46789999999876 233346 99999999999999988999999998864
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-16 Score=87.21 Aligned_cols=49 Identities=33% Similarity=0.543 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc-------CCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE-------HLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-------~~~CP~CR~~~~~ 100 (104)
.+...|+||++.|..+ +.++ |||.||..||..|+.. ..+||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4678899999998764 3467 9999999999999976 5689999999864
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.58 E-value=1.4e-15 Score=89.36 Aligned_cols=50 Identities=26% Similarity=0.716 Sum_probs=42.5
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.....|+||++.|.. .+.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 357789999999865 344447 99999999999999988999999999864
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=80.21 Aligned_cols=44 Identities=27% Similarity=0.561 Sum_probs=36.6
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHh---cCCCCccc
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK---EHLTCPVC 94 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~C 94 (104)
......|+||++.|.. .++++ |||.||..||.+|+. ...+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3567899999999876 34467 999999999999997 45689998
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.56 E-value=2.5e-15 Score=89.53 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=42.9
Q ss_pred CCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCC-CCccccccccCC
Q 045579 46 MTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHL-TCPVCRISCIDI 101 (104)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~~~~ 101 (104)
...+...|+||++.|..+ +.++ |||.||..||..|+.... +||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 335678999999998763 4567 999999999999997655 999999998653
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.56 E-value=1.7e-15 Score=94.93 Aligned_cols=51 Identities=27% Similarity=0.566 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc-CCCCccccccccCC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE-HLTCPVCRISCIDI 101 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~~ 101 (104)
.....|+||++.|.. .+.+++ |||.||..||..|+.. ..+||+||..+...
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 346689999999876 344457 9999999999999986 77899999998543
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=78.27 Aligned_cols=43 Identities=30% Similarity=0.857 Sum_probs=35.9
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHH---hcCCCCccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL---KEHLTCPVC 94 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~~~~~CP~C 94 (104)
.....|+||++.|..+ ++++ |||+||..||..|+ ....+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4677899999999774 3467 99999999999995 456789998
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.55 E-value=2e-15 Score=90.99 Aligned_cols=53 Identities=26% Similarity=0.540 Sum_probs=44.6
Q ss_pred CCccccccccccccCC----CcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCC
Q 045579 48 PSSNYCVICLENFVDG----ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDI 101 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 101 (104)
.....|+||++.|... ..++.++ |||.||..||.+|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4577899999998753 3446667 999999999999999999999999998653
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.2e-15 Score=81.75 Aligned_cols=50 Identities=24% Similarity=0.614 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC--CCCcccccccc
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH--LTCPVCRISCI 99 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~~ 99 (104)
.+....|+||.+.|..+... . .|+|.||..||.+||+.+ .+||+||+.+.
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C--~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEEC--S-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCcc--C-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 35677899999999865433 2 499999999999999877 78999999875
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.54 E-value=5.3e-15 Score=91.60 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=41.2
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCC-CCccccccccCC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHL-TCPVCRISCIDI 101 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~~~~ 101 (104)
....|+||++.|.. .++++ |||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999866 44477 999999999999997654 899999998754
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.52 E-value=4.9e-15 Score=87.22 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=39.7
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCC---CCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHL---TCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~---~CP~CR~~~~~ 100 (104)
....|+||++.|..+ ..++ |||.||..||..|+..+. +||+||..+..
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 356899999998764 3367 999999999999997654 89999998864
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.51 E-value=1.7e-15 Score=89.83 Aligned_cols=48 Identities=29% Similarity=0.645 Sum_probs=40.5
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc-CCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE-HLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~ 99 (104)
..+..|+||++.|.. .+.++ |||.||..||..|+.. ..+||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 457789999999875 34567 9999999999999965 678999999875
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.51 E-value=3.1e-14 Score=80.38 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=43.2
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.....|+||++.|.. .++++ |||+|+..||..|+....+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 467899999999977 55677 99999999999999988999999998754
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.51 E-value=1e-14 Score=86.54 Aligned_cols=48 Identities=33% Similarity=0.654 Sum_probs=40.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc-CCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE-HLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~ 100 (104)
....|+||++.|.. .+.++ |||.||..||..|+.. ..+||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 46789999999865 34467 9999999999999976 7789999999864
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.48 E-value=5.5e-14 Score=78.18 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=40.6
Q ss_pred CCccccccccccccCCCc-EEecCCCCCcccHHhHHHHHh-cCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGES-CRLFPVCYRIFHSVCIDQWLK-EHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~ 100 (104)
.++..|+||++.+...+. +..++ |||.||..|+..|+. ....||+||+.+..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 467789999999865433 22345 999999999999874 45689999998864
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.47 E-value=1.6e-14 Score=77.49 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=40.0
Q ss_pred CccccccccccccCCCcEE-ecCCCCCc-ccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCR-LFPVCYRI-FHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~-~lp~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
++..|+||++.+.+. +. .+| |||. ||.+|+..|...+..||+||+.+..
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 567899999986542 22 248 9999 8999999999888899999998853
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.45 E-value=8.9e-14 Score=80.72 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=43.2
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.....|+||++.|.. .++++ |||+|+..||..|+....+||+||..+..
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 567899999999977 45567 99999999999999988899999998864
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.44 E-value=1.9e-13 Score=79.01 Aligned_cols=49 Identities=16% Similarity=0.023 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCcEEecCCCC-CcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCY-RIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.....|+||++.|.+ .++++ || |+|+..||..|+....+||+||..+..
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 467899999999977 45577 99 999999999999888899999998864
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.44 E-value=2.1e-13 Score=95.15 Aligned_cols=47 Identities=32% Similarity=0.766 Sum_probs=40.8
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHh-cCCCCccccccccC
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK-EHLTCPVCRISCID 100 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~ 100 (104)
...|+||++.+.. ++.+| |||.||..|+..|+. ...+||+||+.+..
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4689999998855 56678 999999999999998 78899999998864
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.44 E-value=3.6e-14 Score=87.03 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=40.5
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCC-CCccccccc
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHL-TCPVCRISC 98 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~ 98 (104)
......|+||++.|..+ +.++ |||.||..||..|+.... +||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35678999999998774 4466 999999999999997654 899999975
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.44 E-value=4.3e-14 Score=75.57 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=39.9
Q ss_pred CccccccccccccCCCcEEecCCCCCc-ccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRI-FHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
....|+||++.+.+. .+..+| |||. ||..|+..|...+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 467899999876442 122347 9998 9999999999888899999998853
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=3.6e-14 Score=74.14 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=38.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccCC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCIDI 101 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 101 (104)
.+...|+||++.|..+ ++++ |||.||..||..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 3567899999999764 5577 9999999999884 66899999998643
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.39 E-value=6.5e-14 Score=77.08 Aligned_cols=44 Identities=20% Similarity=0.560 Sum_probs=37.4
Q ss_pred CccccccccccccCCCcEEecCCCCCc-ccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRI-FHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
+...|+||++.+.. .+.+| |||. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999998755 55678 9999 999999998 789999998853
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=86.04 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=42.7
Q ss_pred CCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC-CCCccccccccCC
Q 045579 46 MTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH-LTCPVCRISCIDI 101 (104)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~~ 101 (104)
...+...|+||++.|..+ +.++ |||+||..||.+|+..+ .+||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 335678999999998764 4467 99999999999999654 4899999988653
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=4.6e-14 Score=83.89 Aligned_cols=45 Identities=24% Similarity=0.532 Sum_probs=38.4
Q ss_pred CccccccccccccCCCcEEec-CCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLF-PVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
....|+||++.|..+ +++ + |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 467899999998764 344 6 999999999999987 78999999984
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.33 E-value=3.7e-13 Score=92.37 Aligned_cols=52 Identities=27% Similarity=0.622 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCcEE----ecCCCCCcccHHhHHHHHhcC-----------CCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCR----LFPVCYRIFHSVCIDQWLKEH-----------LTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~----~lp~C~H~fh~~Ci~~wl~~~-----------~~CP~CR~~~~ 99 (104)
....+|+||++.+..+..+. ..++|+|.||..||.+||+.. ++||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 46778999999987733222 223599999999999999642 46999999875
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=75.22 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=37.8
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC------CCCcc--cccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH------LTCPV--CRIS 97 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~------~~CP~--CR~~ 97 (104)
.....|+||++.|..+ | +++.|||+|+..||..|+... .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP--V-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP--V-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE--E-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC--E-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4578899999999763 3 443399999999999999653 58999 9865
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=2.8e-12 Score=85.54 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=41.8
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc-CCCCccccccccC
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE-HLTCPVCRISCID 100 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~ 100 (104)
......|+||++.|.. .+++| |||+||..||..|+.. ..+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3568899999999877 45677 9999999999999975 4459999998853
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=72.28 Aligned_cols=44 Identities=20% Similarity=0.565 Sum_probs=36.0
Q ss_pred CccccccccccccCCCcEEecCCCCCc-ccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRI-FHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
....|+||++.+.. ++.+| |||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 35679999998755 55678 9999 99999964 3789999999865
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.28 E-value=3.9e-12 Score=67.24 Aligned_cols=48 Identities=23% Similarity=0.597 Sum_probs=37.1
Q ss_pred CCccccccccccccCCCcEEecCCCC--C---cccHHhHHHHHh--cCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCY--R---IFHSVCIDQWLK--EHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~fh~~Ci~~wl~--~~~~CP~CR~~~~ 99 (104)
++...|.||+++.. +.+ ++| |. | .||.+||.+|+. .+.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35678999999743 333 577 65 4 899999999995 3678999999875
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3e-12 Score=73.29 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=39.6
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc--------CCCCcc--cccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE--------HLTCPV--CRIS 97 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~--CR~~ 97 (104)
...+|+||++.+..++.+..++ |||.||.+|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999998776666667 9999999999999842 236999 9987
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.2e-12 Score=67.38 Aligned_cols=45 Identities=29% Similarity=0.712 Sum_probs=37.0
Q ss_pred CCccccccccccccCCCcEEecCCCCCc-ccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRI-FHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.....|.||++.+.. ++.+| |||. ||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456789999987644 67788 9999 99999984 4689999998864
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.21 E-value=1.1e-11 Score=78.49 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC-CCCccccccccC
Q 045579 46 MTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH-LTCPVCRISCID 100 (104)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~ 100 (104)
.......||||++.|.. .+++| |||+|+..||..|+... .+||+||.++..
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 33678899999999976 45567 99999999999999753 479999998753
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.21 E-value=2.8e-12 Score=71.36 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=36.0
Q ss_pred CccccccccccccCCCcEEecCCCCCc-ccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRI-FHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
....|+||++.+.. ++.+| |||. ||..|+..| ..||+||..+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 35689999988654 66778 9999 999999987 38999999875
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.07 E-value=6.2e-11 Score=78.80 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=40.0
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC--CCCcc--cccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH--LTCPV--CRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~--CR~~~~ 99 (104)
.....||||++.|..+ |..+. |||+|+..||..|+... .+||+ ||..+.
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4577899999999764 54445 99999999999999654 47999 998764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.06 E-value=2.8e-11 Score=83.60 Aligned_cols=44 Identities=23% Similarity=0.625 Sum_probs=37.3
Q ss_pred CccccccccccccCCCcEEecCCCCCc-ccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRI-FHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
++..|+||++.+.. ++.+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45789999998765 56678 9999 999999998 689999998853
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.00 E-value=1.8e-10 Score=61.03 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=40.1
Q ss_pred ccccccccccccCCCcEEec-CCCCCcccHHhHHHHHhcCCCCccccccccCC
Q 045579 50 SNYCVICLENFVDGESCRLF-PVCYRIFHSVCIDQWLKEHLTCPVCRISCIDI 101 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 101 (104)
...|+|+++.|.++ +++ + +||+|...||.+||..+.+||+.+.++...
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 35799999999863 445 5 999999999999998888899999988643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.92 E-value=5.9e-10 Score=63.78 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=38.5
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHh-cCCCCccccccccCCC
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK-EHLTCPVCRISCIDIE 102 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~~~ 102 (104)
.|.+|--++.. ..+..| |+|+||.+|+..|.+ ...+||+|+.++..+|
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 47788655433 566778 999999999999984 5678999999997665
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=62.57 Aligned_cols=48 Identities=21% Similarity=0.540 Sum_probs=38.4
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCC--CCcccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHL--TCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~CR~~~~ 99 (104)
....|.||.+-+..+ ... +.|+|.||..|+..|++... .||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g--~~C-~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSC-ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC--EEC-SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC--ccc-CccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 467899999987765 333 34999999999999997654 8999998865
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.42 E-value=6.6e-05 Score=42.31 Aligned_cols=47 Identities=17% Similarity=0.505 Sum_probs=37.8
Q ss_pred CCccccccccccccCCCcEEecCCC-CCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVC-YRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C-~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
-+-..|..|+-. ....|. | .|.+|..|+...|..+..||+|..++..
T Consensus 26 ~G~~nCKsCWf~--~k~LV~----C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFE--NKGLVE----CNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSC--CSSEEE----CSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccc--cCCeee----ecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 456789999844 443443 5 6999999999999999999999998864
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.39 E-value=0.00012 Score=41.67 Aligned_cols=34 Identities=12% Similarity=0.340 Sum_probs=25.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHH
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQ 83 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 83 (104)
++..|.||++.+........+. |+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHH
Confidence 3568999998653333344476 999999999998
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.64 E-value=0.0017 Score=34.34 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=34.0
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcC----CCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEH----LTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~CR~~~~ 99 (104)
.....|.||.+. ++ ++.-..|...||..|+...|... =.||.|.....
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 456679999753 33 44444599999999998877432 36999987553
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.49 E-value=0.00084 Score=35.16 Aligned_cols=52 Identities=25% Similarity=0.453 Sum_probs=36.3
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHh-----cCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK-----EHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~~~ 99 (104)
.+...|+||...+..+...+.-..|...||..|+.--.. ....||.|+..-.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 456789999988765555555445999999999964321 3456999986543
No 77
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.89 E-value=0.008 Score=31.63 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=26.4
Q ss_pred CCccccccccccccCCCcEEecC-CCCCcccHHhHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFP-VCYRIFHSVCID 82 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~ 82 (104)
.+...|++|...+......+.-. .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45778999999987776666655 599999999984
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.77 E-value=0.0036 Score=39.60 Aligned_cols=49 Identities=27% Similarity=0.484 Sum_probs=35.7
Q ss_pred ccccccccccccCCCc---EEecCCCCCcccHHhHHHH------Hh-----cCCCCccccccc
Q 045579 50 SNYCVICLENFVDGES---CRLFPVCYRIFHSVCIDQW------LK-----EHLTCPVCRISC 98 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~---~~~lp~C~H~fh~~Ci~~w------l~-----~~~~CP~CR~~~ 98 (104)
+..|+||...|..++. .+....|...||..|+.-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3569999999887763 5555559999999998421 11 156899998764
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.59 E-value=0.0087 Score=31.00 Aligned_cols=46 Identities=30% Similarity=0.801 Sum_probs=32.0
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHh----cCCCCcccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK----EHLTCPVCRIS 97 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~----~~~~CP~CR~~ 97 (104)
..+..|.||... + .++.-..|...||..|+..-+. ..-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356789999863 3 3444445888999999987542 22359999764
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.44 E-value=0.0038 Score=33.63 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=35.5
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHh----cCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK----EHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~----~~~~CP~CR~~~~ 99 (104)
.....|.||..... ++.++.-..|.-.||..|+..-+. ..-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45667999987653 444555445899999999975442 2346999987764
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.27 E-value=0.022 Score=31.42 Aligned_cols=35 Identities=23% Similarity=0.583 Sum_probs=23.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
..+..|.||- .+...+... ...|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 4678899994 343333222 1228999999999995
No 82
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.15 E-value=0.024 Score=28.29 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=30.5
Q ss_pred ccccccccccCCCcEEecC-CCCCcccHHhHHHHH----hcCCCCcccc
Q 045579 52 YCVICLENFVDGESCRLFP-VCYRIFHSVCIDQWL----KEHLTCPVCR 95 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~wl----~~~~~CP~CR 95 (104)
.|.||...+..+...+.-. .|.-.||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5788988886555555544 488899999985321 3556799885
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.91 E-value=0.029 Score=30.45 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=32.7
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHH-----hcCCCCccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL-----KEHLTCPVCRISC 98 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~~ 98 (104)
....| ||...+......+.-..|...||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 9988775444444444599999999995322 1345699998754
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.27 E-value=0.018 Score=28.53 Aligned_cols=44 Identities=30% Similarity=0.643 Sum_probs=28.5
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccc
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRI 96 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~ 96 (104)
.|.||...-..+ .++.-..|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488897653333 34444459999999999753322 225999965
No 85
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=94.19 E-value=0.033 Score=31.99 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=34.5
Q ss_pred ccccccccccccCCCcEEecC-CCCCcccHHhHHHHH----------hcCCCCccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFP-VCYRIFHSVCIDQWL----------KEHLTCPVCRISC 98 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~wl----------~~~~~CP~CR~~~ 98 (104)
...|+||...+......+.-- .|.-.||..|+.--. ...-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 567999999886655555543 589999999985221 0345699998754
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=94.02 E-value=0.0035 Score=32.34 Aligned_cols=48 Identities=27% Similarity=0.757 Sum_probs=32.5
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~~~ 100 (104)
.+..|.||... ++.+ .-..|.-.||..|+..-+.. .-.||.|......
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 46679999863 3334 44458999999999864422 2359999876543
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.84 E-value=0.11 Score=29.91 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=23.7
Q ss_pred Cccccccccccc-----cCCCcEEecCCCCCcccHHhHH
Q 045579 49 SSNYCVICLENF-----VDGESCRLFPVCYRIFHSVCID 82 (104)
Q Consensus 49 ~~~~C~ICl~~~-----~~~~~~~~lp~C~H~fh~~Ci~ 82 (104)
+...|.+|+..= ..++.++.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 466899998752 1233444444599999999995
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.83 E-value=0.011 Score=30.65 Aligned_cols=48 Identities=25% Similarity=0.648 Sum_probs=31.9
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~~ 99 (104)
..+..|.||.+. ++ ++.-..|...||..|+..-|.. .-.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 346779999752 33 3333448889999999864422 225999987543
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.83 E-value=0.014 Score=33.64 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=26.2
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL 85 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 85 (104)
..+..|.||.+.-...+.+.-. .|+..||..|+...+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCcc
Confidence 3577899998763333334443 499999999998765
No 90
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=93.76 E-value=0.031 Score=31.05 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=34.5
Q ss_pred CCccccccccccc-cCCCcEEecCCCCCcccHHhHHHHHh--cCCCCcccccccc
Q 045579 48 PSSNYCVICLENF-VDGESCRLFPVCYRIFHSVCIDQWLK--EHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~--~~~~CP~CR~~~~ 99 (104)
..+..|.||...- ...+.++.-..|.-.||..|+..-+. ..-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 4577899998653 23335555555888999999975321 2235999976553
No 91
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.58 E-value=0.042 Score=29.74 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=32.5
Q ss_pred CccccccccccccCCCcEEec-CCCCCcccHHhHHHHH---------hcCCCCccccccccCC
Q 045579 49 SSNYCVICLENFVDGESCRLF-PVCYRIFHSVCIDQWL---------KEHLTCPVCRISCIDI 101 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl---------~~~~~CP~CR~~~~~~ 101 (104)
....| ||-.....+..|..- +.|...||..|+.--- .....||.|+......
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 45667 898764444333322 0499999999996321 1245699998765543
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=93.45 E-value=0.026 Score=34.97 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=33.2
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHH-----hcCCCCcccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL-----KEHLTCPVCRIS 97 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~ 97 (104)
....| ||......+...+....|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 46678 9988765455555555599999999995321 234469999863
No 93
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.42 E-value=0.12 Score=28.32 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE 87 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~ 87 (104)
.....|.+|.+.++....|..-..=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4567899999999888777633223899999999998853
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.32 E-value=0.022 Score=35.73 Aligned_cols=46 Identities=26% Similarity=0.640 Sum_probs=32.1
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRISC 98 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~ 98 (104)
.+..|.||... ++ +.....|.-.||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999744 44 4444458999999999765532 23699998754
No 95
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=93.26 E-value=0.024 Score=36.20 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=32.5
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRISC 98 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~ 98 (104)
.+..|.+|... + .+.....|...||..|+.+-+.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 46679999743 2 35555568999999999775532 23699998754
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.05 E-value=0.019 Score=33.31 Aligned_cols=46 Identities=26% Similarity=0.540 Sum_probs=30.3
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRI 96 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~ 96 (104)
..|.||...-...+.++.-..|...||..|+..-|.. .=.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688887643233345444459999999999764422 236999975
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=93.02 E-value=0.12 Score=27.47 Aligned_cols=47 Identities=26% Similarity=0.564 Sum_probs=29.8
Q ss_pred CCccccccccccccCCCcEEecCC--CC-CcccHHhHHHHHh----cCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPV--CY-RIFHSVCIDQWLK----EHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~----~~~~CP~CR~~~~ 99 (104)
.+...| ||..... + .++.-.. |. ..||..|+. |. .+-.||.|+....
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 345667 8987542 3 3444344 55 689999997 42 2336999987643
No 98
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.88 E-value=0.08 Score=29.64 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=29.7
Q ss_pred CCccccccccccccCCCcEEecCC--CC-CcccHHhHHHHHh----cCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPV--CY-RIFHSVCIDQWLK----EHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~----~~~~CP~CR~~~~ 99 (104)
.+...| ||..... +. ++.-.. |. ..||..|+. |. .+-.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345667 9987643 33 333333 54 689999997 32 2346999987643
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.84 E-value=0.054 Score=30.17 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=32.4
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRISC 98 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~ 98 (104)
..+..|.||... ++ +..-..|.-.||..|+.+=|.. .-.||.|+...
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 456789999854 33 4444458889999999775532 22599998654
No 100
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=92.62 E-value=0.018 Score=30.64 Aligned_cols=45 Identities=31% Similarity=0.604 Sum_probs=28.4
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHh----c-CCCCcccccc
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK----E-HLTCPVCRIS 97 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~----~-~~~CP~CR~~ 97 (104)
.|.||...- .+..++.-..|...||..|+..=|. . .=.||.|+.+
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 566776432 2334555455899999999985432 1 2369998753
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=92.61 E-value=0.071 Score=27.69 Aligned_cols=52 Identities=23% Similarity=0.533 Sum_probs=34.8
Q ss_pred CCcccccccccccc-CCCcEEecCCCCCcccHHhHHHHHh-------cCCCCcccccccc
Q 045579 48 PSSNYCVICLENFV-DGESCRLFPVCYRIFHSVCIDQWLK-------EHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~CR~~~~ 99 (104)
..+..|.||..... ....++.-..|.-.||..|+..-+. ..-.||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 35678999987643 2344555555999999999885331 2235999976543
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.54 E-value=0.019 Score=31.16 Aligned_cols=44 Identities=25% Similarity=0.542 Sum_probs=28.8
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHh----c-CCCCccccc
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK----E-HLTCPVCRI 96 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~----~-~~~CP~CR~ 96 (104)
.|.||...-. +..++.-..|...||..|+..=|. . .=.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 7889975432 334444445899999999985332 1 236998864
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.53 E-value=0.013 Score=32.91 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=32.5
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCcccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRIS 97 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~ 97 (104)
.....|.||...-.. ..++.-..|...||..|+..=|.. .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456689999876432 334444459999999999743321 2259999764
No 104
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.48 E-value=0.15 Score=39.61 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCcEEecCCCC-CcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCY-RIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.+...|||=++-|.+ .+++| -| ++|-+..|.+||....+||+=|.++..
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 567889999998877 55677 76 699999999999889999999888753
No 105
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.40 E-value=0.015 Score=29.54 Aligned_cols=45 Identities=29% Similarity=0.775 Sum_probs=30.2
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRI 96 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~ 96 (104)
..+..|.||... ++ ++.-..|...||..|+..-|.. .-.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356789999864 33 3443458999999999864422 224888864
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.30 E-value=0.048 Score=30.85 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=30.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHh---cCCCCcccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK---EHLTCPVCRIS 97 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~CR~~ 97 (104)
+...| ||-.....+..| .-..|.-.||..|+..=+. ..-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34557 897765554444 4445999999999975322 23469999754
No 107
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=92.18 E-value=0.018 Score=30.21 Aligned_cols=47 Identities=28% Similarity=0.624 Sum_probs=31.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRISC 98 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~ 98 (104)
..+..|.||... ++ ++.-..|.-.||..|+..-|.. .-.||.|...-
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 357789999863 33 4444458889999999864422 22599997643
No 108
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=91.95 E-value=0.094 Score=26.99 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=30.4
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVC 94 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C 94 (104)
..|..|+..|... .+..-++|++.||.+|=.---..=..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999988532 235566799999999976532344569987
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.88 E-value=0.1 Score=27.93 Aligned_cols=48 Identities=27% Similarity=0.500 Sum_probs=31.4
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHH---------hcCCCCcccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL---------KEHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---------~~~~~CP~CR~~~~ 99 (104)
...| ||...+... ..+.-..|...||..|+.--. .....||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4456 898876533 344434499999999994211 24667999986543
No 110
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=91.83 E-value=0.032 Score=29.53 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=31.5
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHH---hcCCCCcccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL---KEHLTCPVCRIS 97 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~~~~~CP~CR~~ 97 (104)
.+...| ||..... +...+.-..|...||..|+.--. .....||.|+..
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 356678 9987664 44444444599999999996422 133469998753
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=91.82 E-value=0.27 Score=26.09 Aligned_cols=50 Identities=18% Similarity=0.380 Sum_probs=33.5
Q ss_pred CCccccccccccc-cCCCcEEecCCCCCcccHHhHHHHHh--cCCCCcccccc
Q 045579 48 PSSNYCVICLENF-VDGESCRLFPVCYRIFHSVCIDQWLK--EHLTCPVCRIS 97 (104)
Q Consensus 48 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~--~~~~CP~CR~~ 97 (104)
..+..|.||...- ...+.++.-..|.-.||..|+..-.. ..=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4577899998653 23445555556999999999975321 22258888754
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.40 E-value=0.64 Score=25.86 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=36.3
Q ss_pred CccccccccccccC---CCcEEecCCCCCcccHHhHHHHH-hcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVD---GESCRLFPVCYRIFHSVCIDQWL-KEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~ 99 (104)
....|-||=+++.. ++..+....|+--.|..|++.=. ..+..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 46789999988643 33333222377789999998655 45667999999885
No 113
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=91.32 E-value=0.21 Score=27.66 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=26.7
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHH
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL 85 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 85 (104)
....|.+|...|..-..-.....||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3557999999987544333334599999999987653
No 114
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=91.27 E-value=0.022 Score=30.02 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred CccccccccccccCCCcEEec-CCCCCcccHHhHHHHH---h-----cCCCCcccccc
Q 045579 49 SSNYCVICLENFVDGESCRLF-PVCYRIFHSVCIDQWL---K-----EHLTCPVCRIS 97 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl---~-----~~~~CP~CR~~ 97 (104)
....| ||-.....+..|..- +.|.-.||..|+.--- . .+..||.||..
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34456 796655544433322 1388899999984210 0 13469999864
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=91.18 E-value=0.26 Score=29.34 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=30.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHH------hc-----CCCCcccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL------KE-----HLTCPVCRIS 97 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl------~~-----~~~CP~CR~~ 97 (104)
.+..|.||-+. ..++.-..|-..||..||.+-+ .. .=.|++|+-.
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45679999754 3344444589999999999752 11 1259999654
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=90.90 E-value=0.078 Score=30.74 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=22.7
Q ss_pred ccccccccccc------CCCcEEecCCCCCcccHHhHHHH
Q 045579 51 NYCVICLENFV------DGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 51 ~~C~ICl~~~~------~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
..|.||+..-. .++.++.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 12334443449999999999754
No 117
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=90.65 E-value=0.45 Score=28.73 Aligned_cols=46 Identities=24% Similarity=0.474 Sum_probs=31.9
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHh-----------cCCCCcccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK-----------EHLTCPVCRIS 97 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----------~~~~CP~CR~~ 97 (104)
..+..|.||.+. ++ ++....|...||..||.+-+. ..=.||+|+..
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 346789999754 33 444445899999999997652 12259999753
No 118
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=90.65 E-value=0.2 Score=26.61 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=24.7
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
+..|.+|...|..-..-.--..||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 35799999998754322333349999999997643
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=90.41 E-value=0.018 Score=33.54 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=31.8
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----CCCCccccccccCC
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----HLTCPVCRISCIDI 101 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~~~~ 101 (104)
.|.||...-..+ .++.-..|...||..|+..=|.. .-.||.|+..+.++
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 588887653333 44444459999999999853322 22599998766544
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=90.20 E-value=0.19 Score=29.61 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=25.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
....|.+|...|.....-.-...||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 355799999998754332333349999999997654
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.94 E-value=0.25 Score=26.83 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=25.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
+...|.+|...|.....----..||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 455799999998754332333349999999998753
No 122
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=89.82 E-value=0.37 Score=26.60 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
.....|.+|...|..-..----..||.+||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3456899999998765433333349999999997653
No 123
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=89.79 E-value=0.29 Score=26.70 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=26.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
.....|.+|...|..-..----..||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3466899999998765433333349999999998764
No 124
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=89.45 E-value=0.23 Score=29.67 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=25.8
Q ss_pred CCcccccccccccc-CCCcEEecCCCCCcccHHhHHH
Q 045579 48 PSSNYCVICLENFV-DGESCRLFPVCYRIFHSVCIDQ 83 (104)
Q Consensus 48 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~fh~~Ci~~ 83 (104)
.....|.+|...|. ....-..-..|.|.+|..|-..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 46788999999984 3333334445999999998764
No 125
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=89.33 E-value=0.045 Score=32.22 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=29.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRI 96 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~ 96 (104)
....|..|...|..-..---...||.+||..|.........+|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 345799999988654322233349999999998776555556766644
No 126
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=88.91 E-value=0.12 Score=26.50 Aligned_cols=43 Identities=28% Similarity=0.642 Sum_probs=27.1
Q ss_pred CccccccccccccCCCcEEecCC--CC-CcccHHhHHHHHh----cCCCCccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPV--CY-RIFHSVCIDQWLK----EHLTCPVCRI 96 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~----~~~~CP~CR~ 96 (104)
+...| ||.... .+ .++.-.. |. ..||..|+. |. ..-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 898763 23 3444344 44 689999998 42 2335999865
No 127
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=88.80 E-value=0.13 Score=26.25 Aligned_cols=43 Identities=30% Similarity=0.654 Sum_probs=27.7
Q ss_pred CccccccccccccCCCcEEecCC--CC-CcccHHhHHHHHh----cCCCCccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPV--CY-RIFHSVCIDQWLK----EHLTCPVCRI 96 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~----~~~~CP~CR~ 96 (104)
+...| ||.... .+ .++.-.. |. ..||..|+. |. .+-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 35566 898764 23 3444444 55 699999998 32 2336999975
No 128
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=88.79 E-value=0.089 Score=34.27 Aligned_cols=46 Identities=28% Similarity=0.511 Sum_probs=26.0
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHh----c-CCCCcccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK----E-HLTCPVCRIS 97 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~----~-~~~CP~CR~~ 97 (104)
..|.+|...-..+ .+.....|...||..|+.+=|. . .=.||.|+..
T Consensus 175 c~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3688887542223 3444445999999999985442 1 2269999753
No 129
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.89 E-value=0.37 Score=26.28 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=24.5
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHH
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQ 83 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 83 (104)
....|.+|...|..-..----..||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 45679999999865432222234999999999764
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.58 E-value=0.29 Score=31.66 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=27.2
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
.++..|.+|...|..-..-.-...||++||..|....
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3466899999998765433334459999999998754
No 131
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=87.47 E-value=0.052 Score=29.42 Aligned_cols=44 Identities=30% Similarity=0.588 Sum_probs=27.4
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHhc----C-CCCccccc
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKE----H-LTCPVCRI 96 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~-~~CP~CR~ 96 (104)
.|.||...- .+..++.-..|...||..|+..-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665443 22345554458999999999865421 1 36999875
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=87.41 E-value=0.51 Score=30.25 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=26.6
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
.++..|.+|...|..-..-.-...||++||..|....
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3467999999998754333333349999999997654
No 133
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=87.29 E-value=0.092 Score=33.13 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=29.9
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHh----cCCCCccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK----EHLTCPVCRISC 98 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~----~~~~CP~CR~~~ 98 (104)
+..|.+|... ++ +.....|.-.||..|+..=+. ..-.||.|+...
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999754 33 333344888999999976442 222599998653
No 134
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=86.98 E-value=0.19 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=11.3
Q ss_pred CccccccccccccCCC
Q 045579 49 SSNYCVICLENFVDGE 64 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~ 64 (104)
+...||||+..+...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4578888888776543
No 135
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.85 E-value=0.4 Score=25.29 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=33.8
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHH----hcCCCCcccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL----KEHLTCPVCRISCI 99 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl----~~~~~CP~CR~~~~ 99 (104)
.....| ||......+...+.-..|...||..|+.--. .....||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 345678 7987765555455544589999999986431 23446999986543
No 136
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=86.32 E-value=0.11 Score=29.85 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=18.0
Q ss_pred CCCcccHHhHHHHHhcCCCCccccccccCCC
Q 045579 72 CYRIFHSVCIDQWLKEHLTCPVCRISCIDIE 102 (104)
Q Consensus 72 C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 102 (104)
||+.|. .-+.....||.|+..-++.-
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred CcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 999991 11245567999999876554
No 137
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=86.25 E-value=0.09 Score=22.91 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=9.5
Q ss_pred CCCCccccccccCC
Q 045579 88 HLTCPVCRISCIDI 101 (104)
Q Consensus 88 ~~~CP~CR~~~~~~ 101 (104)
+.+||+|+..+++.
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 34688888777654
No 138
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=86.00 E-value=0.68 Score=26.57 Aligned_cols=45 Identities=22% Similarity=0.634 Sum_probs=28.9
Q ss_pred CCccccccccccccCCCcEEecC--CCCCcccHHhHHHHHhc----CCCCccccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFP--VCYRIFHSVCIDQWLKE----HLTCPVCRISC 98 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~ 98 (104)
..+..|.+|.+. + .++.-. .|...||..|+. |.. .-.||.|+-.+
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 456789999832 3 344433 388899999997 432 22488776544
No 139
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.37 E-value=0.12 Score=29.65 Aligned_cols=47 Identities=23% Similarity=0.541 Sum_probs=29.9
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHh----cCCCCcccccccc
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK----EHLTCPVCRISCI 99 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~----~~~~CP~CR~~~~ 99 (104)
.|.||...-.. ..+..-..|...||..|+..=|. ..-.||.|+....
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 56777654332 34555455999999999986442 2235998876543
No 140
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=84.31 E-value=0.12 Score=25.61 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=26.0
Q ss_pred cccccccCCCcEEecCCCCCcccHHhHHHHH---hcCCCCccccc
Q 045579 55 ICLENFVDGESCRLFPVCYRIFHSVCIDQWL---KEHLTCPVCRI 96 (104)
Q Consensus 55 ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~~~~~CP~CR~ 96 (104)
||..... +...+.-..|...||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 33444444489999999996322 23446999875
No 141
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.15 E-value=0.47 Score=26.13 Aligned_cols=51 Identities=20% Similarity=0.381 Sum_probs=34.5
Q ss_pred CccccccccccccC-CCcEEecCCCCCcccHHhHHHHHh--------cCCCCcccccccc
Q 045579 49 SSNYCVICLENFVD-GESCRLFPVCYRIFHSVCIDQWLK--------EHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~CR~~~~ 99 (104)
.+..|.||...-.. ...++.-..|...||..|+..-|. ..=.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35689999876332 244555555999999999986442 1236999976554
No 142
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=84.05 E-value=0.48 Score=26.81 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=10.3
Q ss_pred ccHHhHHHHHh
Q 045579 76 FHSVCIDQWLK 86 (104)
Q Consensus 76 fh~~Ci~~wl~ 86 (104)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 143
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=83.90 E-value=0.49 Score=26.82 Aligned_cols=11 Identities=27% Similarity=1.081 Sum_probs=10.2
Q ss_pred ccHHhHHHHHh
Q 045579 76 FHSVCIDQWLK 86 (104)
Q Consensus 76 fh~~Ci~~wl~ 86 (104)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 144
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=83.74 E-value=0.24 Score=25.54 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=27.8
Q ss_pred CccccccccccccCCCcEEecCC--CC-CcccHHhHHHHH--hcCCCCcccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPV--CY-RIFHSVCIDQWL--KEHLTCPVCRIS 97 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl--~~~~~CP~CR~~ 97 (104)
+...| ||.... .+ ..+.-.. |. ..||..|+.--- ..+-.||.|+..
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 34566 898753 33 3444344 44 799999997210 123469999753
No 145
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=82.85 E-value=0.24 Score=34.57 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHh-------cCCCCccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK-------EHLTCPVCRISC 98 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~CR~~~ 98 (104)
....|.+|...|.....-.....||++||..|...++. ...+|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35679999998864322222224999999999987651 234577775544
No 146
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.49 E-value=0.77 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=28.3
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
....|+.|-..+..++.+.. -+..||.+|. +|-.|+..|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 35678899888876666554 4677887775 37777777654
No 147
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.31 E-value=1.6 Score=30.38 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=29.1
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHH---hc--CCCCcccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL---KE--HLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~~--~~~CP~CR~~~~ 99 (104)
...|||=+..|..+ ++... |.|.=|.+ +..|| .. .-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~-C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVT-CTHLQCFD-AALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETT-CCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccC--CcCCC-CCCCccCC-HHHHHHHHhhCCCeECCCCCcccC
Confidence 44688877776553 55555 99984433 33344 22 336999998774
No 148
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.28 E-value=1.5 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=29.2
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHH---h--cCCCCcccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL---K--EHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~--~~~~CP~CR~~~~ 99 (104)
...|||=+..|..+ ++-.. |.|+-|.+ +..|| . ..-.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~P--vRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccccc--CcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccC
Confidence 45788877776553 55555 99984444 33344 2 2346999988763
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.89 E-value=1 Score=24.09 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=27.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
....|..|-..+...+.+.. =+..||.+|.. |-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF~--------C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCFR--------CHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTCB--------CSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcCE--------EcCCCCCcCC
Confidence 45679999888766655543 46678887753 6677666543
No 150
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=79.76 E-value=1.2 Score=27.11 Aligned_cols=46 Identities=17% Similarity=0.418 Sum_probs=29.6
Q ss_pred Ccccccccccccc--CCCcEEecCCCCCcccHHhHHHHHhcCC--CCccccc
Q 045579 49 SSNYCVICLENFV--DGESCRLFPVCYRIFHSVCIDQWLKEHL--TCPVCRI 96 (104)
Q Consensus 49 ~~~~C~ICl~~~~--~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~CR~ 96 (104)
.+..|.+|...|. .+...... .|+|.+|..|-. |+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 5789999999864 33344444 499999999983 332221 2666543
No 151
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=79.74 E-value=0.62 Score=20.40 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=19.6
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHh
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVC 80 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~C 80 (104)
..|+.|-..+...+.+.. =|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGG
T ss_pred CcCCccCCEEecceeEEE---CCeEecccC
Confidence 468999887766666553 467899887
No 152
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.50 E-value=1.3 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=28.3
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
....|.-|-..+..++.+.. =+..||.+|. +|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45679999888876666554 4567887775 3777877765
No 153
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=77.15 E-value=2 Score=22.46 Aligned_cols=32 Identities=22% Similarity=0.561 Sum_probs=24.4
Q ss_pred CCccccccccccccCCCcEEecCCC-CCcccHHhHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVC-YRIFHSVCIDQW 84 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C-~H~fh~~Ci~~w 84 (104)
++..-|.||.++ ..++.+. | +-+||..|...-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 456679999877 2466665 9 789999998874
No 154
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.06 E-value=2.6 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=16.3
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhH
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCI 81 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci 81 (104)
...|.-|-..+...+.+.. -+..||..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF 43 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLA---NQQVFHISCF 43 (91)
T ss_dssp SCBCTTTCCBCCTTSEEEC---SSSEEETTTC
T ss_pred CCcCccCCCccCCceeEEE---CCCEECCCCC
Confidence 4567777766655444322 4556666654
No 155
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.58 E-value=1.3 Score=22.72 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=20.5
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
..|..|-..+...+.++.. =+..||.+|. +|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCC
Confidence 4577776666543333221 3556666554 2555655554
No 156
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=76.43 E-value=0.15 Score=27.63 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=15.8
Q ss_pred CCCCcccHHhHHHHHhcCCCCc
Q 045579 71 VCYRIFHSVCIDQWLKEHLTCP 92 (104)
Q Consensus 71 ~C~H~fh~~Ci~~wl~~~~~CP 92 (104)
.|++.||..|...|=. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5999999999999833 5563
No 157
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=76.25 E-value=0.17 Score=25.99 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=29.7
Q ss_pred CCCccccccccc-cccCCCcEEecCCCCCcccHHhHHHHHhc-CC---CCccccc
Q 045579 47 TPSSNYCVICLE-NFVDGESCRLFPVCYRIFHSVCIDQWLKE-HL---TCPVCRI 96 (104)
Q Consensus 47 ~~~~~~C~ICl~-~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~---~CP~CR~ 96 (104)
..+...|.||+- .|.++..-...- |.-.||..|-..|-.. +. .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 356778999986 455543333332 6667888887776422 22 3777765
No 158
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=75.51 E-value=3.3 Score=21.83 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=30.5
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHh-----cCCCCcccccc
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK-----EHLTCPVCRIS 97 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~ 97 (104)
.-.||...+..+...+.-..|.-.||..|+.--.. ....||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34489877654444554445899999999964321 24569999865
No 159
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.33 E-value=0.99 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=20.7
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
..|..|-..+...+.++.. =+..||.+|.. |-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCFI--------CHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTTC--------CSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCCc--------ccccCCccC
Confidence 4577777666554333221 34566665542 555655554
No 160
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=74.41 E-value=4.1 Score=25.01 Aligned_cols=33 Identities=27% Similarity=0.656 Sum_probs=23.6
Q ss_pred CccccccccccccCCCcEEecC--CCCCcccHHhHHHHH
Q 045579 49 SSNYCVICLENFVDGESCRLFP--VCYRIFHSVCIDQWL 85 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl 85 (104)
.+..|.||-+. ..++.-. .|...||..||..++
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhc
Confidence 45678888643 3444433 488999999999987
No 161
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.39 E-value=1 Score=23.44 Aligned_cols=42 Identities=21% Similarity=0.437 Sum_probs=26.2
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
....|+-|-..+...+.++.. =+..||..|. +|-.|...|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 456788888887654444322 4567887764 36666666543
No 162
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.20 E-value=1.5 Score=22.55 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=15.2
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHh
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK 86 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~ 86 (104)
-..|..|...+.. ..... . =+..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~-~~~~~-~-~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRG-QHFYA-V-ERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTT-SCEEE-S-SSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCc-CcCEe-e-CCeEECHHHHHHHHc
Confidence 3455555555522 11111 1 345566665555443
No 163
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=73.31 E-value=0.24 Score=27.10 Aligned_cols=32 Identities=28% Similarity=0.636 Sum_probs=20.3
Q ss_pred cccccccccC--CCcEEecCCCCCcccHHhHHHH
Q 045579 53 CVICLENFVD--GESCRLFPVCYRIFHSVCIDQW 84 (104)
Q Consensus 53 C~ICl~~~~~--~~~~~~lp~C~H~fh~~Ci~~w 84 (104)
||=|-..+.. +...+.-|.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 6655443321 1222445569999999999888
No 164
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=72.62 E-value=1.9 Score=21.88 Aligned_cols=42 Identities=21% Similarity=0.437 Sum_probs=28.6
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
....|..|-..+...+.++.. =+..||..|. +|-.|...|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 355799998888766655432 4567888776 47777776654
No 165
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.50 E-value=1.8 Score=22.83 Aligned_cols=41 Identities=22% Similarity=0.503 Sum_probs=25.6
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
...|..|-..+..++.++.. =+..||.+|.. |-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCFT--------CSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTCC--------CSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccCc--------hhhCCCccCC
Confidence 35788888877665554332 45678877653 6667666643
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=72.41 E-value=0.77 Score=24.35 Aligned_cols=39 Identities=31% Similarity=0.517 Sum_probs=21.4
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
...|..|-..+..++.+.. -+..||.+|.. |-.|...|.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF~--------C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCFL--------CMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSEE--------CSSSCCEEC
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccCc--------cCCCCCCCC
Confidence 3467777776655554433 34566665542 555655554
No 167
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.06 E-value=1.6 Score=23.07 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=23.0
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
..|+.|-..+. +..+.. -+..||.+|.. |-.|+..|.
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~CF~--------C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDCFV--------CAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTTSS--------CSSSCCCCC
T ss_pred CcCccccCEec-cceEEE---CCceeCccCCc--------cccCCCCCC
Confidence 47888888776 333333 45678877653 566665554
No 168
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.62 E-value=2.5 Score=21.51 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=17.3
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
..|..|-..+. +..+.. -+..||.+|. +|-.|+..|.
T Consensus 6 ~~C~~C~~~I~-~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVIKA---MNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCC-SCCEEE---TTEEECTTTS--------BCSSSCCBCS
T ss_pred CcCccCCCEec-ceEEEE---CcccccccCC--------EeCCCCCcCC
Confidence 35666655554 222222 3445555553 2555555544
No 169
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=70.35 E-value=1.5 Score=24.76 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=24.1
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
..||+|..+++...... +|..|-.. +.....||-|.++|-
T Consensus 33 ~~CP~Cq~eL~~~g~~~--------hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHA--------RCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEE--------EETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEE--------ECccccch-hhccccCcchhhHHH
Confidence 68999998875432222 23333332 245566898888763
No 170
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=70.24 E-value=1.2 Score=31.74 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=31.7
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHH-----hcCCCCccccccc
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL-----KEHLTCPVCRISC 98 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~~ 98 (104)
....||...+..+...+....|.-.||..|+.--- ...-.||.|+...
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 34558988765444455544599999999994221 1345799998654
No 171
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.06 E-value=2.3 Score=21.79 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=22.0
Q ss_pred ccccccccccccC--CCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 50 SNYCVICLENFVD--GESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~--~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
...|.-|-..+.. .+.++. . -+..||.+|. +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCcccC--------EeccCCCcCC
Confidence 4467777776654 222222 1 4566776664 3666666654
No 172
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=69.83 E-value=1 Score=23.52 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=24.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccH-HhHHHHHhcCCCCccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHS-VCIDQWLKEHLTCPVCRI 96 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~-~Ci~~wl~~~~~CP~CR~ 96 (104)
..-..|..|...+..+..... =+..||. .|..+- -...|-.|..
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~---~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEH---EGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEE---TTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCCccccCccCCCCceECc---CCeEeeCHHHHHHH--hCccCCCcCC
Confidence 345677788777665432221 3566777 577653 3334666653
No 173
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=69.59 E-value=1.3 Score=22.42 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=24.2
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
...|+.|-..+. ++.+ .. =+..||.+|. +|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCcC--------EECCCCCCCCC
Confidence 456888877776 3332 22 4667887764 37777776654
No 174
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.26 E-value=0.34 Score=24.83 Aligned_cols=37 Identities=22% Similarity=0.541 Sum_probs=24.3
Q ss_pred ccccccccccccCCCcEEec--CC--CCCcccHHhHHHHHh
Q 045579 50 SNYCVICLENFVDGESCRLF--PV--CYRIFHSVCIDQWLK 86 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l--p~--C~H~fh~~Ci~~wl~ 86 (104)
...||-|...++..+....+ .. |++.|+..|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35688888877665532222 12 678888888888853
No 175
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.38 E-value=2.4 Score=22.32 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=21.8
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
....|.-|-..+. +..+.. -+..||.+|. +|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLIF---KNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCCC---SSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCCccCCCEec-ceEEEE---CcceeCCCCC--------EeCCCCCccC
Confidence 3456777777665 222221 4566776653 3666666654
No 176
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=67.60 E-value=5.1 Score=28.11 Aligned_cols=32 Identities=25% Similarity=0.640 Sum_probs=21.8
Q ss_pred ccccccccccccCCCcEEecC--CCCCcccHHhHHHHH
Q 045579 50 SNYCVICLENFVDGESCRLFP--VCYRIFHSVCIDQWL 85 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl 85 (104)
+..|.||-+. + .++... .|...||..||..++
T Consensus 93 ~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 93 QSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp BCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHT
T ss_pred cccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhc
Confidence 4567776543 2 333333 489999999999988
No 177
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=66.39 E-value=4.6 Score=23.21 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=27.2
Q ss_pred CccccccccccccC-CCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVD-GESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.-..|..|-..+.. +...... =|..||..|..+-+.....|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 44567777666642 2222221 35567777776654433367777766653
No 178
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.01 E-value=2.9 Score=21.74 Aligned_cols=39 Identities=28% Similarity=0.602 Sum_probs=23.7
Q ss_pred ccccccccccccC--C-CcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 50 SNYCVICLENFVD--G-ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~--~-~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
...|+.|-..+.. . ..+.. -+..||.+|.. |-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a---~~~~wH~~CF~--------C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF---QDSQWHSECFN--------CGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE---TTEEEEGGGCB--------CTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE---CCcccCcccCC--------hhhCCCcCC
Confidence 3468888777664 2 23322 45678877753 667766664
No 179
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=65.83 E-value=1.3 Score=25.52 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWL 85 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 85 (104)
..-..|..|-..+..+...... =+..||..|..+.+
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred cccCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 4456677777666444433322 35677777777665
No 180
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=65.72 E-value=4.2 Score=21.82 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.....|..|-..+.. ..+.. -+..||.+|.. |-.|...|..
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF~--------C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVKA---RDKYRHPECFV--------CADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEES---SSCEECTTTCC--------CSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cEEEE---CCceECccCCE--------ecCCCCCCCC
Confidence 345679999887764 33322 56788877753 7777777654
No 181
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=65.29 E-value=3.1 Score=22.60 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=8.8
Q ss_pred cccccccccccCCCc
Q 045579 51 NYCVICLENFVDGES 65 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~ 65 (104)
..||.|..++.....
T Consensus 3 ~~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 3 ITCPVCHHALERNGD 17 (81)
T ss_dssp CCCSSSCSCCEECSS
T ss_pred CCCCCCCCccccCCC
Confidence 457777766654433
No 182
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=64.67 E-value=5 Score=23.19 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=28.5
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
...|.-|-..+.....+.. -+..||..|. +|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 4689999988775443443 5678998885 4888888875
No 183
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=64.14 E-value=2.7 Score=21.11 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=16.7
Q ss_pred CccccccccccccCCCcEEecC--CCCCcc
Q 045579 49 SSNYCVICLENFVDGESCRLFP--VCYRIF 76 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~f 76 (104)
+-..|++|...+.......+.+ .|++.|
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 4567999998765433333333 477766
No 184
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=63.28 E-value=3.8 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=10.9
Q ss_pred CCcccHHhHHHHHhcCCCCccccccc
Q 045579 73 YRIFHSVCIDQWLKEHLTCPVCRISC 98 (104)
Q Consensus 73 ~H~fh~~Ci~~wl~~~~~CP~CR~~~ 98 (104)
|..||..|..+-+..+..|..|...|
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSI 79 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEE
T ss_pred CccccccccccccccCCccccCCCcc
Confidence 34445444444332222355554444
No 185
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=61.90 E-value=7.5 Score=28.04 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=31.6
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHh-----cCCCCcccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK-----EHLTCPVCRIS 97 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~ 97 (104)
....| ||...+..+...+....|.-.||..|+.---. ..-.||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34445 99887754444555445999999999953221 23469999854
No 186
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.69 E-value=6.4 Score=20.51 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=24.5
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
....|.-|-..+.. ..+.. -+..||.+|. +|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVKL---RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEEC---SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEEEE---CcceeCcCcC--------eeCCCCCCCC
Confidence 45678888887764 33322 5677887775 3666666553
No 187
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=60.47 E-value=3.6 Score=22.77 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=27.3
Q ss_pred CCccccccccccccCCCcEEecCCCC---CcccHHhHHHHH--hcCCCCcc-ccc
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCY---RIFHSVCIDQWL--KEHLTCPV-CRI 96 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~fh~~Ci~~wl--~~~~~CP~-CR~ 96 (104)
.+...| ||..... ++ ++.-..|. ..||..|+.--. ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 345567 9986432 33 44433454 689999996210 12346999 874
No 188
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=59.28 E-value=5.7 Score=22.70 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=32.8
Q ss_pred CccccccccccccC-CCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVD-GESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.-..|..|-..+.. +.... .. =|..||..|..+-+..+..|-.|...|.+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 34578888777642 11121 11 46678999988877666689999887764
No 189
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.04 E-value=5.1 Score=21.49 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=23.1
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
....|..|-..+. ++.+.. -+..||.+|. +|-.|+..|.
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVA---LGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceEEEE---CCccccccCC--------ccCCCCCCCC
Confidence 3456888877763 333332 4567776665 3666666664
No 190
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=58.94 E-value=4.3 Score=24.59 Aligned_cols=44 Identities=9% Similarity=0.187 Sum_probs=18.6
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccc
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISC 98 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 98 (104)
.-..|..|...+.... . . . =|..||..|..+-+ ...|..|...|
T Consensus 32 ~CF~C~~C~~~L~~~~-f-~-~-~g~~yC~~~y~~~f--~~~C~~C~~~I 75 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERC-F-S-R-GESVYCKDDFFKRF--GTKCAACQLGI 75 (169)
T ss_dssp TTSBCTTTCCBCCSCC-E-E-S-SSCEECHHHHHHHH--SCBCTTTCCBC
T ss_pred ccCccCCCCCcCCCCC-c-c-c-CCeeeecccccccc--ccccccccccc
Confidence 3445555555543322 1 1 1 34455555554422 22344444444
No 191
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=58.77 E-value=1.6 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=11.3
Q ss_pred HHHhcCCCCcccccccc
Q 045579 83 QWLKEHLTCPVCRISCI 99 (104)
Q Consensus 83 ~wl~~~~~CP~CR~~~~ 99 (104)
.||..--.||.|+.++.
T Consensus 3 ~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 3 TKLLDILACPICKGPLK 19 (69)
T ss_dssp CCGGGTCCCTTTCCCCE
T ss_pred hHHHhheeCCCCCCcCe
Confidence 34455567888887764
No 192
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.66 E-value=4.2 Score=21.34 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=23.7
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
...|..|-..+...+.++. . =+..||..|.. |-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF~--------C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF-Y-EDRHFHEGCFR--------CCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC-C-SSCCCBTTTSB--------CTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEE-e-CCccccccCCe--------ecCCCCccC
Confidence 3468888877763333322 1 35678877643 666766664
No 193
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.58 E-value=4.4 Score=20.93 Aligned_cols=10 Identities=40% Similarity=0.859 Sum_probs=4.3
Q ss_pred cccccccccc
Q 045579 51 NYCVICLENF 60 (104)
Q Consensus 51 ~~C~ICl~~~ 60 (104)
..|..|...+
T Consensus 32 F~C~~C~~~L 41 (73)
T 1wig_A 32 ALCVRCGQMF 41 (73)
T ss_dssp SCCSSSCCCC
T ss_pred CEeCCCCCCC
Confidence 3444444444
No 194
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.29 E-value=5.4 Score=20.10 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=4.2
Q ss_pred ccccccccc
Q 045579 52 YCVICLENF 60 (104)
Q Consensus 52 ~C~ICl~~~ 60 (104)
.|.-|-..+
T Consensus 7 ~C~~C~~~I 15 (69)
T 2cur_A 7 GCVKCNKAI 15 (69)
T ss_dssp CCSSSCCCC
T ss_pred CCcccCCEe
Confidence 444554444
No 195
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=56.88 E-value=4.9 Score=21.97 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=21.5
Q ss_pred ccccccccccccCCCcEEe-cCCCCCcccHHhHHHH
Q 045579 50 SNYCVICLENFVDGESCRL-FPVCYRIFHSVCIDQW 84 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~-lp~C~H~fh~~Ci~~w 84 (104)
...|.||-.. ..+..+.. .+.|.-.||..|..+-
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 5679999643 11333332 1338889999999874
No 196
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.56 E-value=4.2 Score=20.58 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=5.8
Q ss_pred ccccccccccc
Q 045579 51 NYCVICLENFV 61 (104)
Q Consensus 51 ~~C~ICl~~~~ 61 (104)
..|..|-..+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8z_A 6 SGCVQCKKPIT 16 (70)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCcccCCeec
Confidence 34556655554
No 197
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.44 E-value=5.7 Score=21.30 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCccccccccccccC-CCcEEecCCCCCcccHHhHH
Q 045579 47 TPSSNYCVICLENFVD-GESCRLFPVCYRIFHSVCID 82 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~ 82 (104)
......|+.|.+.|.- ...-.+-+.|.|..|.+|-.
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv 58 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRI 58 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccc
Confidence 3567789999998752 11222333489988887743
No 198
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=55.63 E-value=5.1 Score=20.66 Aligned_cols=40 Identities=18% Similarity=0.508 Sum_probs=26.6
Q ss_pred ccccccccccccC---C-CcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 50 SNYCVICLENFVD---G-ESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 50 ~~~C~ICl~~~~~---~-~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
...|+-|-..+.. . ..+.. =+..||..|. +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY---EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE---TTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEE---CcceeCcccC--------EehhcCCCCCC
Confidence 4579999888764 2 33333 4568888774 48888877754
No 199
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=55.30 E-value=5.1 Score=21.84 Aligned_cols=47 Identities=15% Similarity=0.367 Sum_probs=28.1
Q ss_pred CccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 49 SSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
.-..|..|...+........ =|..||..|..+ .....|..|...|.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~---~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAK---DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEE---TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECc---CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 44567777776643322211 356777777654 234568888888763
No 200
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=54.81 E-value=1.5 Score=22.93 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=11.4
Q ss_pred HHHhcCCCCcccccccc
Q 045579 83 QWLKEHLTCPVCRISCI 99 (104)
Q Consensus 83 ~wl~~~~~CP~CR~~~~ 99 (104)
+||..--.||+|+.++.
T Consensus 5 ~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLR 21 (67)
T ss_dssp GGGTCCCBCTTTCCBCE
T ss_pred HHHHHHhCCCCCCCcCe
Confidence 45555567888887764
No 201
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=52.89 E-value=18 Score=20.49 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
..-..|..|...+... .... . =|..||..|..+- ....|..|...|..
T Consensus 28 ~~CF~C~~C~~~L~~~-~f~~-~-~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGE-IYVM-V-NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTS-EEEE-E-TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcC-EEEe-E-CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 3456788887776532 2221 1 4667888887663 44568888887764
No 202
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=50.10 E-value=3.5 Score=17.30 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=5.2
Q ss_pred CCccccccc
Q 045579 90 TCPVCRISC 98 (104)
Q Consensus 90 ~CP~CR~~~ 98 (104)
.||+|.+-+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 466665544
No 203
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.55 E-value=6.5 Score=20.52 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=18.5
Q ss_pred ccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
...|+-|-..+.. ..+.. -+..||.+|. +|..|...|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHhc--------CcccCCCccC
Confidence 3456666665542 22222 3455665553 2555555543
No 204
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.39 E-value=7 Score=20.26 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=19.4
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
..|+.|-..+.. ..+.. =+..||.+|. +|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCC
Confidence 456666666543 23322 3455665553 25566555543
No 205
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=47.12 E-value=20 Score=20.37 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=18.1
Q ss_pred ccccccccccccCCCcEEecCCCCCccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFH 77 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh 77 (104)
...|..|... +...+.|. |||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~-CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLS-CYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETT-TCCEEE
T ss_pred CCcCccccCC---CCeeeeee-cCcccc
Confidence 4569999754 44577787 999987
No 206
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=47.07 E-value=3.6 Score=26.09 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=12.8
Q ss_pred CCCCcccHHhHHHHHhcCCCCccccccc
Q 045579 71 VCYRIFHSVCIDQWLKEHLTCPVCRISC 98 (104)
Q Consensus 71 ~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 98 (104)
.|||++-. . .-..||+|..+-
T Consensus 176 ~CG~i~~g--~-----~p~~CP~C~~~k 196 (202)
T 1yuz_A 176 ICGYIHKG--E-----DFEKCPICFRPK 196 (202)
T ss_dssp SSCCEEES--S-----CCSBCTTTCCBG
T ss_pred CCCCEEcC--c-----CCCCCCCCCCCh
Confidence 47887542 1 224799997753
No 207
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=46.62 E-value=7.1 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=12.0
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHh
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVC 80 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~C 80 (104)
..|..|-..+..++.+.. -+..||.+|
T Consensus 8 ~~C~~C~~~I~~~~~v~a---~g~~wH~~C 34 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQC---EGSSFHKSC 34 (192)
T ss_dssp EECTTTCCEECSSCCEEE---TTEEECTTT
T ss_pred CcCccCCCeecceeEEEe---CCceecCCC
Confidence 345555555443333322 334455444
No 208
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=46.09 E-value=13 Score=25.60 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=24.7
Q ss_pred CCcccccccccccc-CCCcEEecCCCCCcccHHhHHH
Q 045579 48 PSSNYCVICLENFV-DGESCRLFPVCYRIFHSVCIDQ 83 (104)
Q Consensus 48 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~fh~~Ci~~ 83 (104)
.....|.+|-..|. ..........||..+|..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 34678999988774 2222222234999999999885
No 209
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.97 E-value=9.5 Score=21.44 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=20.9
Q ss_pred CCccccccccccccC-CCcEEecCCCCCcccHHhHHHHHhc
Q 045579 48 PSSNYCVICLENFVD-GESCRLFPVCYRIFHSVCIDQWLKE 87 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~ 87 (104)
..-..|..|...+.. +.... .. =|..||..|..+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhCc
Confidence 345667777766643 22221 11 3566777777775543
No 210
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=44.92 E-value=0.58 Score=19.18 Aligned_cols=11 Identities=36% Similarity=1.063 Sum_probs=8.1
Q ss_pred cccHHhHHHHH
Q 045579 75 IFHSVCIDQWL 85 (104)
Q Consensus 75 ~fh~~Ci~~wl 85 (104)
.||..|-.+||
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 47777877776
No 211
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=44.82 E-value=17 Score=19.86 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=19.1
Q ss_pred CCCccccccccccccCCCcEEecCCCCCcccHH
Q 045579 47 TPSSNYCVICLENFVDGESCRLFPVCYRIFHSV 79 (104)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~ 79 (104)
......|..|-..+..... .... ||..||..
T Consensus 22 k~~~~rC~~C~kkvgl~~~-f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATS-FECR-CGNNFCAS 52 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSC-EECT-TCCEECTT
T ss_pred cccCccchhhCCeecccCC-eEcC-CCCEeccc
Confidence 3445689999876543212 2334 99999843
No 212
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=43.50 E-value=5.2 Score=24.21 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=14.9
Q ss_pred CCCCcccHHhHHHHHhcCCCCcccccccc
Q 045579 71 VCYRIFHSVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 71 ~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
.|||.|-.. .....||.|..++.
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCcccCC------CCCCcCCCCCCcce
Confidence 488888532 22347999987753
No 213
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=43.30 E-value=6.1 Score=24.20 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=29.7
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCCCCccccccccC
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHLTCPVCRISCID 100 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 100 (104)
..-..|..|...+.... .. . =|..||..|..+- -...|..|...|..
T Consensus 85 ~~CF~C~~C~~~L~~~~-f~--~-~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERC-FS--R-GESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp SSTTSCTTTCCCCSSCC-EE--E-TTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred cccCccCCCCCccCCCc-ee--E-CCEeeecCccccc--cccccccCCCccCC
Confidence 45678888887776543 21 1 4667887777653 33467777776654
No 214
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=42.37 E-value=7.6 Score=19.38 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=23.2
Q ss_pred cccccccccccCC-CcEEecCCCCCccc--HHhHHHHHhcCCCCcccccccc
Q 045579 51 NYCVICLENFVDG-ESCRLFPVCYRIFH--SVCIDQWLKEHLTCPVCRISCI 99 (104)
Q Consensus 51 ~~C~ICl~~~~~~-~~~~~lp~C~H~fh--~~Ci~~wl~~~~~CP~CR~~~~ 99 (104)
..|+-|-..+..+ ..+.. -+..|| .+|. +|-.|+..|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a---~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY---NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE---TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE---CCCccCCCCCCE--------ECCCCCCcCC
Confidence 3577787777653 33332 466788 7774 3666766664
No 215
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=40.21 E-value=1.6 Score=22.89 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=7.0
Q ss_pred CCCcccccccc
Q 045579 89 LTCPVCRISCI 99 (104)
Q Consensus 89 ~~CP~CR~~~~ 99 (104)
-.||+|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 35777776653
No 216
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=38.47 E-value=12 Score=23.41 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=12.6
Q ss_pred CCCCcccHHhHHHHHhcCCCCcccccc
Q 045579 71 VCYRIFHSVCIDQWLKEHLTCPVCRIS 97 (104)
Q Consensus 71 ~C~H~fh~~Ci~~wl~~~~~CP~CR~~ 97 (104)
.|||++-.+ .....||+|..+
T Consensus 160 ~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 160 NCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCEeeCC------CCCCCCCCCcCC
Confidence 478776421 122379999875
No 217
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.26 E-value=11 Score=19.52 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=12.7
Q ss_pred cccccccccccCCCcEEecCCCCCcccHHhH
Q 045579 51 NYCVICLENFVDGESCRLFPVCYRIFHSVCI 81 (104)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci 81 (104)
..|+.|-..+.. ..+. . =+..||.+|.
T Consensus 16 ~~C~~C~~~I~~-~~v~--a-~~~~~H~~CF 42 (80)
T 2cuq_A 16 PRCARCSKTLTQ-GGVT--Y-RDQPWHRECL 42 (80)
T ss_dssp CCCTTTCCCCCS-CCEE--S-SSSEECTTTC
T ss_pred CcCCCCCCEecC-cEEE--E-CCchhhhhhC
Confidence 456666655543 2222 1 3455665553
No 218
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=37.07 E-value=6.7 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=8.8
Q ss_pred CCccccccccccc
Q 045579 48 PSSNYCVICLENF 60 (104)
Q Consensus 48 ~~~~~C~ICl~~~ 60 (104)
.-...|.||+..|
T Consensus 43 A~~i~C~VCr~tF 55 (86)
T 1wvk_A 43 AMSIQCKVCMQTF 55 (86)
T ss_dssp TCCEEETTTTEEE
T ss_pred hhCCCChHhHhhH
Confidence 3466788887655
No 219
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=36.98 E-value=30 Score=19.48 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=18.1
Q ss_pred CCCCcccHHhHH------HHHhc-----CCCCcccccc
Q 045579 71 VCYRIFHSVCID------QWLKE-----HLTCPVCRIS 97 (104)
Q Consensus 71 ~C~H~fh~~Ci~------~wl~~-----~~~CP~CR~~ 97 (104)
.|+..||..|+. .-+.. ...||.|-..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 399999999962 12222 3579999654
No 220
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.85 E-value=8.7 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.694 Sum_probs=7.2
Q ss_pred CCCCcccccccc
Q 045579 88 HLTCPVCRISCI 99 (104)
Q Consensus 88 ~~~CP~CR~~~~ 99 (104)
...||+|.+.+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 345777766553
No 221
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=35.22 E-value=7.2 Score=20.33 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=9.4
Q ss_pred HhcCCCCcccccccc
Q 045579 85 LKEHLTCPVCRISCI 99 (104)
Q Consensus 85 l~~~~~CP~CR~~~~ 99 (104)
|..--.||+|+.++.
T Consensus 5 LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 5 FLDILVCPVTKGRLE 19 (68)
T ss_dssp SSCCCBCSSSCCBCE
T ss_pred HhhheECCCCCCcCe
Confidence 334446888887763
No 222
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=34.81 E-value=11 Score=21.26 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=26.1
Q ss_pred ccccccccccCCCcEEecCCCCCcccHHhHHHHHh--------cCCCCcccccc
Q 045579 52 YCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLK--------EHLTCPVCRIS 97 (104)
Q Consensus 52 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~CR~~ 97 (104)
.|..|.........++.-..|...||..|+..... ....||.|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 34444444433444554445999999999864321 11359999753
No 223
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=32.61 E-value=11 Score=19.66 Aligned_cols=11 Identities=27% Similarity=1.041 Sum_probs=7.8
Q ss_pred CCCcccccccc
Q 045579 89 LTCPVCRISCI 99 (104)
Q Consensus 89 ~~CP~CR~~~~ 99 (104)
..||+|.+++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 35888887764
No 224
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=32.23 E-value=18 Score=19.83 Aligned_cols=15 Identities=0% Similarity=-0.409 Sum_probs=8.7
Q ss_pred cCCCCccccccccCC
Q 045579 87 EHLTCPVCRISCIDI 101 (104)
Q Consensus 87 ~~~~CP~CR~~~~~~ 101 (104)
....||+|+..+..+
T Consensus 18 r~k~C~~c~~~~~~i 32 (88)
T 2vqe_R 18 RKAKVKATLGEFDLR 32 (88)
T ss_dssp CSCCTTTSCCCEETT
T ss_pred CCCCCCccCCCCCcC
Confidence 345677776665433
No 225
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=32.14 E-value=12 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=20.3
Q ss_pred CCCCcccHHhHHHHHhc-----CCCCcccccc
Q 045579 71 VCYRIFHSVCIDQWLKE-----HLTCPVCRIS 97 (104)
Q Consensus 71 ~C~H~fh~~Ci~~wl~~-----~~~CP~CR~~ 97 (104)
.|.|+++..++..|-.. ...|+.|+..
T Consensus 6 ~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 6 VCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp CCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCcChhhccccccccccccCCCCCcCcccccc
Confidence 39999999888887521 2469999863
No 226
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.65 E-value=1.6 Score=29.64 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCccccccccccccCCCcEEec----CCCCCcccHHhHHHHHhcCCCCcccccc
Q 045579 48 PSSNYCVICLENFVDGESCRLF----PVCYRIFHSVCIDQWLKEHLTCPVCRIS 97 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l----p~C~H~fh~~Ci~~wl~~~~~CP~CR~~ 97 (104)
.....||+|=..-..+ ++.. .+=.+.+|.-|-..|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5677999997653322 1110 1112467777888887777889999764
No 227
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=30.99 E-value=7.7 Score=20.35 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=8.4
Q ss_pred cCCCCcccccccc
Q 045579 87 EHLTCPVCRISCI 99 (104)
Q Consensus 87 ~~~~CP~CR~~~~ 99 (104)
.--.||.|+.++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 3446888877663
No 228
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.20 E-value=23 Score=17.12 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=9.9
Q ss_pred CccccccccccccCCC
Q 045579 49 SSNYCVICLENFVDGE 64 (104)
Q Consensus 49 ~~~~C~ICl~~~~~~~ 64 (104)
....|.+|-..|....
T Consensus 17 ~~~~C~~C~k~f~~~~ 32 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRS 32 (73)
T ss_dssp SEEECSSSCCEEECCC
T ss_pred CCeeCCcccchhCCHH
Confidence 3467777776665543
No 229
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=26.99 E-value=19 Score=17.18 Aligned_cols=8 Identities=63% Similarity=1.572 Sum_probs=6.5
Q ss_pred CCcccccc
Q 045579 90 TCPVCRIS 97 (104)
Q Consensus 90 ~CP~CR~~ 97 (104)
+||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999765
No 230
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.67 E-value=12 Score=17.22 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=5.9
Q ss_pred CCcccccccc
Q 045579 90 TCPVCRISCI 99 (104)
Q Consensus 90 ~CP~CR~~~~ 99 (104)
+||.|...|.
T Consensus 11 ~C~~C~~~i~ 20 (39)
T 2i5o_A 11 PCEKCGSLVP 20 (39)
T ss_dssp ECTTTCCEEE
T ss_pred ccccccCcCC
Confidence 4666666554
No 231
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.42 E-value=65 Score=16.53 Aligned_cols=46 Identities=30% Similarity=0.466 Sum_probs=26.0
Q ss_pred ccccccccccccCCCcEEecCCCC---CcccHHhHHHHH--hcCCCCccccccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCY---RIFHSVCIDQWL--KEHLTCPVCRISC 98 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~---H~fh~~Ci~~wl--~~~~~CP~CR~~~ 98 (104)
...| ||.... .+. .+.-..|. ..||..|+.--- ...-.||.|+...
T Consensus 6 ~~yC-~C~~~~-~g~-MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YGE-MVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CSS-EECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CCC-EeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 4455 587652 333 33323353 789999997211 1233599997653
No 232
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.05 E-value=84 Score=18.30 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=17.1
Q ss_pred ccccccccccccCCCcEEecCCCCCccc
Q 045579 50 SNYCVICLENFVDGESCRLFPVCYRIFH 77 (104)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh 77 (104)
...|..|... ....+.|. |||+.|
T Consensus 34 ~~~C~~C~~~---~~LwlCL~-CG~vgC 57 (129)
T 2g45_A 34 GWKCSKCDMR---ENLWLNLT-DGSILC 57 (129)
T ss_dssp BCCCSSSSCC---SSEEEETT-TCCEEE
T ss_pred CCcCccccCc---CceEEecc-CCcccc
Confidence 4579999754 35666777 999855
No 233
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=23.43 E-value=88 Score=16.23 Aligned_cols=35 Identities=11% Similarity=0.333 Sum_probs=23.6
Q ss_pred CCccccccccccccCCCcEEecCCCCCcccHHhHHH
Q 045579 48 PSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQ 83 (104)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 83 (104)
..+..|-+|.+.-........+. |.-.||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~-C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccC-ccchhhhhhhHh
Confidence 34678999975421222344555 999999999986
No 234
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.16 E-value=25 Score=17.40 Aligned_cols=8 Identities=38% Similarity=1.452 Sum_probs=6.5
Q ss_pred CCcccccc
Q 045579 90 TCPVCRIS 97 (104)
Q Consensus 90 ~CP~CR~~ 97 (104)
+||+|...
T Consensus 38 ~CP~Cg~~ 45 (54)
T 4rxn_A 38 VCPLCGVG 45 (54)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999775
No 235
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=22.17 E-value=19 Score=15.66 Aligned_cols=7 Identities=43% Similarity=1.322 Sum_probs=4.2
Q ss_pred CCccccc
Q 045579 90 TCPVCRI 96 (104)
Q Consensus 90 ~CP~CR~ 96 (104)
.||+|-+
T Consensus 18 ~CP~CtA 24 (32)
T 2bai_A 18 ECPKCSA 24 (32)
T ss_dssp GHHHHHC
T ss_pred cccccce
Confidence 4777744
No 236
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.00 E-value=74 Score=14.82 Aligned_cols=27 Identities=11% Similarity=0.301 Sum_probs=13.5
Q ss_pred ccccccccc-ccc--CC-CcEEecCCCCCccc
Q 045579 50 SNYCVICLE-NFV--DG-ESCRLFPVCYRIFH 77 (104)
Q Consensus 50 ~~~C~ICl~-~~~--~~-~~~~~lp~C~H~fh 77 (104)
...|+.|-. .+. .. ..++... ||.+|-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~-CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAK-CGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESS-SCCBCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcc-cCCccc
Confidence 346888855 322 22 2333333 777664
No 237
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.70 E-value=45 Score=20.36 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=13.2
Q ss_pred cCCCCCcccHHhHHHHHhcCCCCcccccc
Q 045579 69 FPVCYRIFHSVCIDQWLKEHLTCPVCRIS 97 (104)
Q Consensus 69 lp~C~H~fh~~Ci~~wl~~~~~CP~CR~~ 97 (104)
.+.|||++-. ..-..||+|..+
T Consensus 141 C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3348887641 223479999754
No 238
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=21.16 E-value=39 Score=19.91 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=11.9
Q ss_pred cccccCCCCHHHHHhhCCcc
Q 045579 20 EVGERQGLGDEALEQLMPCV 39 (104)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ 39 (104)
..+.-.+..++.+...+..+
T Consensus 32 ~IG~ls~v~~e~l~faf~~~ 51 (139)
T 3a43_A 32 VLGELQDVAEDIVKFAMEQL 51 (139)
T ss_dssp EEETTCCCCHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHH
Confidence 34556667777776654444
No 239
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.63 E-value=20 Score=13.17 Aligned_cols=6 Identities=33% Similarity=0.966 Sum_probs=2.5
Q ss_pred Cccccc
Q 045579 91 CPVCRI 96 (104)
Q Consensus 91 CP~CR~ 96 (104)
|+.|..
T Consensus 5 C~~C~k 10 (26)
T 2lvu_A 5 CERCGK 10 (26)
Confidence 444433
No 240
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.05 E-value=29 Score=16.91 Aligned_cols=8 Identities=63% Similarity=1.456 Sum_probs=6.2
Q ss_pred CCcccccc
Q 045579 90 TCPVCRIS 97 (104)
Q Consensus 90 ~CP~CR~~ 97 (104)
+||+|...
T Consensus 38 ~CP~Cg~~ 45 (52)
T 1e8j_A 38 ACPVCGAS 45 (52)
T ss_dssp CCSSSCCC
T ss_pred cCCCCCCc
Confidence 69998764
No 241
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.94 E-value=29 Score=16.90 Aligned_cols=8 Identities=38% Similarity=1.290 Sum_probs=6.1
Q ss_pred CCcccccc
Q 045579 90 TCPVCRIS 97 (104)
Q Consensus 90 ~CP~CR~~ 97 (104)
+||+|...
T Consensus 37 ~CP~Cg~~ 44 (52)
T 1yk4_A 37 VCPLCGAP 44 (52)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCC
Confidence 68888764
No 242
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.85 E-value=29 Score=17.13 Aligned_cols=8 Identities=38% Similarity=1.257 Sum_probs=6.3
Q ss_pred CCcccccc
Q 045579 90 TCPVCRIS 97 (104)
Q Consensus 90 ~CP~CR~~ 97 (104)
+||+|...
T Consensus 38 ~CP~Cga~ 45 (55)
T 2v3b_B 38 VCPDCGVG 45 (55)
T ss_dssp CCTTTCCC
T ss_pred cCCCCCCC
Confidence 79999764
No 243
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=20.61 E-value=2.5 Score=19.77 Aligned_cols=14 Identities=21% Similarity=0.897 Sum_probs=10.9
Q ss_pred HhHHHHHhcCCCCc
Q 045579 79 VCIDQWLKEHLTCP 92 (104)
Q Consensus 79 ~Ci~~wl~~~~~CP 92 (104)
.||..|...+.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (43)
T 2roo_A 19 NCVYAWYNQQSSCE 32 (43)
T ss_dssp EEEECGGGSSEEEE
T ss_pred HHHHHHHccCCchh
Confidence 57888988887774
No 244
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.45 E-value=56 Score=18.48 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=32.2
Q ss_pred ccccccCCCCHHHHHhhCCccccCC-CCCCCCccccccccccccCCCcEEecCCCCCcccHHhHHHHHhcCC-CCccccc
Q 045579 19 LEVGERQGLGDEALEQLMPCVNYSD-QEMTPSSNYCVICLENFVDGESCRLFPVCYRIFHSVCIDQWLKEHL-TCPVCRI 96 (104)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~CR~ 96 (104)
+..+.-.+..++.+...+..+.... .-.. .-+=++ ..+...... .|||.|-.. .... .||.|..
T Consensus 33 l~IG~ls~v~~e~l~f~f~~~~~gt~~~e~-----a~L~i~--~~p~~~~C~-~CG~~~e~~------~~~~~~CP~Cgs 98 (119)
T 2kdx_A 33 VGIGERSAMDKSLFVSAFETFREESLVCKD-----AILDIV--DEKVELECK-DCSHVFKPN------ALDYGVCEKCHS 98 (119)
T ss_dssp EEEETTSCCCHHHHHHHHHHHGGGCTTTSS-----CCEEEE--EECCEEECS-SSSCEECSC------CSTTCCCSSSSS
T ss_pred EEeehhccccHHHHHHHHHHHHhCChhhcC-----cEEEEE--eccceEEcC-CCCCEEeCC------CCCCCcCccccC
Confidence 4456667777777776544443322 1111 000001 112223333 388887652 2345 6999976
Q ss_pred cc
Q 045579 97 SC 98 (104)
Q Consensus 97 ~~ 98 (104)
..
T Consensus 99 ~~ 100 (119)
T 2kdx_A 99 KN 100 (119)
T ss_dssp CC
T ss_pred CC
Confidence 64
Done!