BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045580
(764 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 189/696 (27%), Positives = 268/696 (38%), Gaps = 164/696 (23%)
Query: 66 TGICELKKLVELDLSKNNLYGH------LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
+G +L L LDLS N++ G LS L H+ + S N+++G++ ++
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--VSRC 199
Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 178
+LE+L + NNF F L + S LQ +S N L + E LK LN+
Sbjct: 200 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTE--LKLLNIS 255
Query: 179 -NCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 237
N + +P L L +++ L+ NK G P +L + DTL
Sbjct: 256 SNQFVGPIPPLPLKSL--QYLSLAENKFTGEIPDFL---SGACDTLT------------- 297
Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIP-SSMSEMKRLESLD 296
+D+S N F G +P G F +P ++ +M+ L+ LD
Sbjct: 298 -------GLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 297 LSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCW--------LYLNNNH 348
LS N FSGELP N+ G ++ NLC LYL NN
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----PNLCQNPKNTLQELYLQNNG 405
Query: 349 FSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-L 407
F+GKI LS + L+ L LS N L G IP G+LS L+ L + N L G +P +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
+L L + N G IP L ++L + L +N+ +G IP WI L IL L N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE 527
GNIP +L L LDL+ N FNG IP
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--------------------------- 558
Query: 528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCN------E 581
+K SG+ F+ KRY K D G+ C+ E
Sbjct: 559 -----------------FKQSGKIAANFIAGKRYVYIKND------GMKKECHGAGNLLE 595
Query: 582 LTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP------ 635
G ++ LS N++ G + N + LD+S+N LSG IP
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 636 -----------------------------------------PQ-LTELNFLSNFNVSYNH 653
PQ ++ L L+ ++S N+
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 654 LSGPTPNAGQFANFDEQNYGGNSGLCG---PRINKS 686
LSGP P GQF F + N GLCG PR + S
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 60 LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
L+ ++ I + L L+L N++ G + + +L + +LDLSSN+L G + ++ +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 120 KSLEYLSLDDNNFEG 134
L + L +NN G
Sbjct: 704 TMLTEIDLSNNNLSG 718
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 190/696 (27%), Positives = 268/696 (38%), Gaps = 164/696 (23%)
Query: 66 TGICELKKLVELDLSKNNLYGH------LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
+G +L L LDLS N++ G LS L H+ + S N+++G++ ++
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--VSRC 196
Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 178
+LE+L + NNF F L + S LQ +S N L + E LK LN+
Sbjct: 197 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTE--LKLLNIS 252
Query: 179 -NCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 237
N + +P L L +++ L+ NK G P +L + DTL L
Sbjct: 253 SNQFVGPIPPLPLKSL--QYLSLAENKFTGEIPDFL---SGACDTLTGL----------- 296
Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIP-SSMSEMKRLESLD 296
D+S N F G +P G F +P ++ +M+ L+ LD
Sbjct: 297 ---------DLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 297 LSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCW--------LYLNNNH 348
LS N FSGELP N+ G ++ NLC LYL NN
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----PNLCQNPKNTLQELYLQNNG 402
Query: 349 FSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-L 407
F+GKI LS + L+ L LS N L G IP G+LS L+ L + N L G +P +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
+L L + N G IP L ++L + L +N+ +G IP WI L IL L N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE 527
GNIP +L L LDL+ N FNG IP
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--------------------------- 555
Query: 528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCN------E 581
+K SG+ F+ KRY K D G+ C+ E
Sbjct: 556 -----------------FKQSGKIAANFIAGKRYVYIKND------GMKKECHGAGNLLE 592
Query: 582 LTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP------ 635
G ++ LS N++ G + N + LD+S+N LSG IP
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 636 -----------------------------------------PQ-LTELNFLSNFNVSYNH 653
PQ ++ L L+ ++S N+
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 654 LSGPTPNAGQFANFDEQNYGGNSGLCG---PRINKS 686
LSGP P GQF F + N GLCG PR + S
Sbjct: 713 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 748
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 60 LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
L+ ++ I + L L+L N++ G + + +L + +LDLSSN+L G + ++ +
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 120 KSLEYLSLDDNNFEG 134
L + L +NN G
Sbjct: 701 TMLTEIDLSNNNLSG 715
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 122/293 (41%), Gaps = 52/293 (17%)
Query: 401 VPSSF-NLSSLRRLYMH-MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458
+PSS NL L LY+ +N G IP A+ + + L L + SG+IP ++++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLW 518
L N L G +P + L L + N+ +G IP + GSF
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP------------DSYGSFSKL 175
Query: 519 ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFS 578
T+ IS +T K ++ L ++ D S
Sbjct: 176 FTSMTISRNR---------------------------LTGKIPPTFANLNLAFV---DLS 205
Query: 579 CNELTGDIPSEIGSLSEIRALNLSHNFLS---GSIPQSLSNLKMIESLDLSHNDLSGQIP 635
N L GD GS + ++L+ N L+ G + S K + LDL +N + G +P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLP 261
Query: 636 PQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCT 688
LT+L FL + NVS+N+L G P G FD Y N LCG + +CT
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ 396
T L +LY+ + + SG I D LS+ +L+ LD S N L G +P +L L + N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 397 LSGSVPSSFNLSSLRRLYMHM----NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI 452
+SG++P S+ S +L+ M N G IP + +L +DL N G +
Sbjct: 161 ISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-ANLNLAFVDLSRNMLEGDASVLF 217
Query: 453 N-----------------EFSYLGI------LLLRGNQLKGNIPNQLCHLSLLNILDLSY 489
+ +G+ L LR N++ G +P L L L+ L++S+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 490 NKFNGPIP 497
N G IP
Sbjct: 278 NNLCGEIP 285
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 19/249 (7%)
Query: 170 YQLKALNLRNCSL---HALPSFLLHQLDLRFIDLSH-NKLQGTFPSWLLQNNTKLDTLYL 225
Y++ L+L +L + +PS L + L F+ + N L G P + + T+L LY+
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYI 108
Query: 226 LNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPS 284
+ ++SG S L+ +D S+N SG LP ++ LP IP
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPD 167
Query: 285 SMSEMKRL-ESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGE--VVFPNSTNLCW 341
S +L S+ +S N +G++P N L+G+ V+F + N
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR--NMLEGDASVLFGSDKNTQK 225
Query: 342 LYLNNNHFS---GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS 398
++L N + GK+ GLSK +L LDL NN +YG +P L L L++S N L
Sbjct: 226 IHLAKNSLAFDLGKV--GLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 399 GSVPSSFNL 407
G +P NL
Sbjct: 282 GEIPQGGNL 290
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 53/243 (21%)
Query: 67 GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
I +L +L L ++ N+ G + LS + + LD S N L+G L I+++ +L ++
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 127 LDDNNFEGSFSFNSLKNHSKL-QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
D N G+ +S + SKL +S + + T + P
Sbjct: 156 FDGNRISGAIP-DSYGSFSKLFTSMTISRNRL---TGKIP-------------------- 191
Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
P+F L+L F+DLS N L+G S L ++ ++L NSL+ + +L
Sbjct: 192 PTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248
Query: 246 IDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
+D+ +N+ G L P ++++K L SL++S NN GE
Sbjct: 249 LDLRNNRIYGTL-------------------------PQGLTQLKFLHSLNVSFNNLCGE 283
Query: 306 LPR 308
+P+
Sbjct: 284 IPQ 286
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 284 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 341
S++ E+ L L L+ N LP +N LQ + VF TNL +
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
L L +N + K T+L ELDLS N L F L+ L+ L + +NQL SV
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SV 196
Query: 402 PSSF--NLSSLRRLYMHMNAFNGSIPG 426
P L+SL+ +++H N ++ + PG
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
+L L ELDLS N L LT +K L L NQL V + SL+Y+ L D
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
Query: 130 NNFE 133
N ++
Sbjct: 215 NPWD 218
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 25/134 (18%)
Query: 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ 396
TNL +L L N K T+L EL L N L F L+ L +L+++ NQ
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 397 LSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEF 455
L S+P G + ++LT LDL NQ S+P + ++
Sbjct: 145 LQ-SLPK----------------------GVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL 180
Query: 456 SYLGILLLRGNQLK 469
+ L L L NQLK
Sbjct: 181 TQLKDLRLYQNQLK 194
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
+ + EL L L L+ N L + LT++K L L NQL V + +L YL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 126 SLDDNNFEG--SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
+L N + F+ L N ++L + N L + F L QLK L L L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLS--YNQLQSLPEGVFDKL--TQLKDLRLYQNQLK 194
Query: 184 ALPSFLLHQL-DLRFIDLSHNKLQGTFP 210
++P + +L L++I L N T P
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 342 LYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS 400
L LN+N DGL + L++L+L N L G P+ F S +Q L + EN++
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 401 VPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI-WINEFSYL 458
F L L+ L ++ N + +PG+ +SLT L+L N F+ + + W E +L
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WL 151
Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
L G + P++ + + I DL +++F
Sbjct: 152 RKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
+F +L L L N +G + A+ + EL L N + F L L+ L+
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 392 ISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421
+ +NQ+S +P SF +L+SL L + N FN
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 30/126 (23%)
Query: 368 LSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGA 427
+S++ L+G++PH L L++ NQL+G P NAF G+
Sbjct: 44 ISSDGLFGRLPH-------LVKLELKRNQLTGIEP---------------NAFEGA---- 77
Query: 428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDL 487
S + L L +N+ L L L NQ+ +P HL+ L L+L
Sbjct: 78 ----SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
Query: 488 SYNKFN 493
+ N FN
Sbjct: 134 ASNPFN 139
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 157/386 (40%), Gaps = 62/386 (16%)
Query: 324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGN 383
+N + N TNL L L NN + D L T+L L+LS+N + I G
Sbjct: 94 NNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI-SDISALSG- 149
Query: 384 LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
L+ LQ L S NQ++ P + NL++L RL + N S L + ++L L +NQ
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLA-NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ 206
Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC-FAN 502
S P+ I + L L L GNQLK L L+ L LDL+ N+ + P+
Sbjct: 207 ISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 503 VTLWTLGQAAGSFVLWETTQRIS--TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKR 560
+T LG S IS A N L ++++ S + + ++T
Sbjct: 263 LTELKLGANQIS--------NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT--L 312
Query: 561 YESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI 620
Y + DI S + SL++++ L S+N +S SL+NL I
Sbjct: 313 YFNNISDI-------------------SPVSSLTKLQRLFFSNNKVSDV--SSLANLTNI 351
Query: 621 ESLDLSHNDLSGQIP-PQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC 679
L HN +S P LT + L + ++ + P NY N +
Sbjct: 352 NWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN--APV------------NYKANVSI- 396
Query: 680 GPRINKSCTTVLEPPETPSDGAEEDE 705
P K+ T L P T SDG E
Sbjct: 397 -PNTVKNVTGALIAPATISDGGSYTE 421
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L KL EL L N + ++SP L+ LT + L+L+ NQL S I+N+K+L YL+L N
Sbjct: 260 LTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 315
Query: 131 NFEGSFSFNSLKNHSKLQVFKLSNSLV 157
N +SL +KLQ SN+ V
Sbjct: 316 NISDISPVSSL---TKLQRLFFSNNKV 339
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 67/409 (16%)
Query: 66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
T + L KLV++ L NN ++P L+NLT++ L L +NQ+T + N+ +L L
Sbjct: 79 TPLKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRL 134
Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
L N ++L + LQ S++ V T+ P L+ L++ + + +
Sbjct: 135 ELSSNTIS---DISALSGLTSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNKVSDI 188
Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
S L +L + ++N++ P +L N LD L L N L L +S +L
Sbjct: 189 -SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNLTD 243
Query: 246 IDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
+D+++N+ S P +S + +L L L +N S
Sbjct: 244 LDLANNQISNLAP---------------------------LSGLTKLTELKLGANQISNI 276
Query: 306 LPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 365
P +N L+ N NL +L L N+ S +S T L
Sbjct: 277 SP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQR 331
Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF----- 420
L SNN + NL+ + +L NQ+S P + NL+ + +L ++ A+
Sbjct: 332 LFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQAWTNAPV 388
Query: 421 ----NGSIPGALRRSSS-----LTVLD---LRDNQFSGSIPIWINEFSY 457
N SIP ++ + T+ D + + ++P + NE SY
Sbjct: 389 NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSY 437
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 284 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 341
S++ E+ L L L+ N LP +N LQ + VF TNL +
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
LYL +N + K T+L LDL NN L F L+ L+ L +++NQL SV
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SV 196
Query: 402 PSSF--NLSSLRRLYMHMNAFN 421
P L+SL +++ N ++
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWD 218
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 327 LQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFGNL 384
+QG PN + +L L N K+ D L + T+L L L+ N L F L
Sbjct: 56 VQGIQYLPN---VRYLALGGN----KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 385 SGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
+ L+ L + ENQL F+ L++L LY++ N G + ++LT LDL +NQ
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 444 FSGSIPIWI-NEFSYLGILLLRGNQLKGNIPN-------QLCHLSLLN 483
S+P + ++ + L L L NQLK +P+ L H+ LLN
Sbjct: 169 LQ-SLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLN 214
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
VF T+L LYL N +K TSL L+LS N L F L+ L+ L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 392 ISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
++ NQL S+P L+ L+ L ++ N G R +SL + L DN + + P
Sbjct: 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Query: 450 ------IWINEFS 456
WIN+ S
Sbjct: 166 GIRYLSEWINKHS 178
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 328 QGEVVFPNS--TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS 385
QG P +L L N + TSL +L L N L F L+
Sbjct: 17 QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 386 GLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
L +L++S NQL S+P+ L+ L+ L ++ N G + + L L L NQ
Sbjct: 77 SLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Query: 444 FSGSIP 449
S+P
Sbjct: 136 LK-SVP 140
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
+L +L EL L+ N L LT +K L L NQL V + SL+Y+ L D
Sbjct: 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Query: 130 NNFE 133
N ++
Sbjct: 158 NPWD 161
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 389 FLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG 446
+LD+ N L S+P+ L+SL +LY+ N G + +SLT L+L NQ
Sbjct: 32 YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 447 SIPIWI-NEFSYLGILLLRGNQLK 469
S+P + ++ + L L L NQL+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ 113
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 123
V TGI + LDL N+L + LT + L L N+L V + SL
Sbjct: 22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE------YQLKALNL 177
YL+L N + SL N ++ +L + + T + LP+ QLK L L
Sbjct: 80 YLNLSTNQLQ------SLPNGVFDKLTQLKE--LALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 178 RNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFP 210
L ++P + +L L++I L N T P
Sbjct: 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 337 TNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIP-HWFGNLSGLQFLDISE 394
TN LYL++N + K++ G+ +L EL L +N L G +P F +L+ L LD+
Sbjct: 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97
Query: 395 NQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
NQL+ +PS+ L L+ L+M N +P + R + LT L L NQ SIP
Sbjct: 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L +L LDL N L S L H+K L + N+LT L I + L +L+LD N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 131 NFE----GSFSFNSLKNHSKL 147
+ G+F S H+ L
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYL 166
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 30/197 (15%)
Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDI 392
N TNL L L++N S LS TSL +L+ S+N + P NL+ L+ LDI
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 393 SENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIP--------------------GALRRSS 432
S N++S + L++L L N + P G L +
Sbjct: 181 SSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT 239
Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
+LT LDL +NQ S P ++ + L L L NQ+ P L L+ L L+L+ N+
Sbjct: 240 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 493 NGPIPVC-FANVTLWTL 508
P+ N+T TL
Sbjct: 296 EDISPISNLKNLTYLTL 312
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG-Q 633
L+ S N ++ DI S + L+ ++ LN S N ++ P L+NL +E LD+S N +S
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 634 IPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN 675
+ +LT L L N N +S TP G N DE + GN
Sbjct: 190 VLAKLTNLESLIATN---NQISDITP-LGILTNLDELSLNGN 227
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L KL EL L N + ++SP L+ LT + L+L+ NQL S I+N+K+L YL+L N
Sbjct: 260 LTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 315
Query: 131 NFEGSFSFNSLKNHSKLQ 148
N +SL +KLQ
Sbjct: 316 NISDISPVSSL---TKLQ 330
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 37/201 (18%)
Query: 58 VPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 117
+PL VF TG+ L KL D+S+N + L +L ++K L++ N L +
Sbjct: 95 IPLGVF--TGLSNLTKL---DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 118 NIKSLEYLSLDDNNFEG------------------SFSFNSLKNHSKLQVFKLSNSLVKI 159
+ SLE L+L+ N + N+++++S ++++L +
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK----VL 205
Query: 160 ETEEFPGLPEYQ--------LKALNLRNCSLHALPSFLL-HQLDLRFIDLSHNKLQGTFP 210
E +P L L +L++ +C+L A+P + H + LRF++LS+N + T
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIE 264
Query: 211 SWLLQNNTKLDTLYLLNNSLS 231
+L +L + L+ L+
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA 285
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 74 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
L EL+L++N + +NL +++ L L SN+L V + +L L + +N
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 134 G--SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLH 191
+ F L N L+V N LV I F GL L+ L L C+L ++P+ L
Sbjct: 118 ILLDYMFQDLYNLKSLEVG--DNDLVYISHRAFSGL--NSLEQLTLEKCNLTSIPTEALS 173
Query: 192 QL 193
L
Sbjct: 174 HL 175
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 59 PLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 118
P++ + + EL +L E+ L L L +++VL++S NQLT +SV +
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318
Query: 119 IKSLEYLSLDDN 130
+ +LE L LD N
Sbjct: 319 VGNLETLILDSN 330
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 130/317 (41%), Gaps = 47/317 (14%)
Query: 353 IQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-LSSLR 411
+ +G+ T LL DL N + F + L+ L+++EN +S P +FN L +LR
Sbjct: 26 VPEGIPTETRLL--DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 412 RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN 471
L + N G S+LT LD+ +N+ + + ++ + + L+ ++ N
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-----VILLDYMFQDLYNLKSLEVGDN 138
Query: 472 IPNQLCH--LSLLNILD-LSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIST-- 526
+ H S LN L+ L+ K N ++ L G VL I+
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCN------LTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 527 --EFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFS------ 578
F+ Y L++ E+ H+ ++ MT N + GL+ +
Sbjct: 193 DYSFKRLYR--LKVLEISHWPY------LDTMTP-----------NCLYGLNLTSLSITH 233
Query: 579 CNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQL 638
CN LT + L +R LNLS+N +S L L ++ + L L+ P
Sbjct: 234 CN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292
Query: 639 TELNFLSNFNVSYNHLS 655
LN+L NVS N L+
Sbjct: 293 RGLNYLRVLNVSGNQLT 309
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 3/140 (2%)
Query: 330 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQF 389
+ F T L WL L+ N T L L L+NN L F +L+ L
Sbjct: 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 390 LDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS 447
L + NQL S+PS L+ L+ L ++ N GA + ++L L L NQ
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 448 IPIWINEFSYLGILLLRGNQ 467
+ L + L GNQ
Sbjct: 171 PHGAFDRLGKLQTITLFGNQ 190
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNA 419
T L L+L N L F +L+ L L ++ NQL+ F+ L+ L +LY+ N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 420 FNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW-INEFSYLGILLLRGNQLKGNIPNQLCH 478
G R + L L L NQ SIP ++ + L L L NQL+
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 479 LSLLNILDLSYNKFN 493
L L + L N+F+
Sbjct: 178 LGKLQTITLFGNQFD 192
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
L KL EL L+ N L + LT+++ L LS+NQL + L+ ++L
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 130 NNFEGS 135
N F+ S
Sbjct: 189 NQFDCS 194
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 30/197 (15%)
Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDI 392
N TNL L L++N S LS TSL +L S+N + P NL+ L+ LDI
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 393 SENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIP--------------------GALRRSS 432
S N++S + L++L L N + P G L +
Sbjct: 181 SSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT 239
Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
+LT LDL +NQ S P ++ + L L L NQ+ P L L+ L L+L+ N+
Sbjct: 240 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 493 NGPIPVC-FANVTLWTL 508
P+ N+T TL
Sbjct: 296 EDISPISNLKNLTYLTL 312
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG-Q 633
L+ S N ++ DI S + L+ ++ L+ S N ++ P L+NL +E LD+S N +S
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 634 IPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN 675
+ +LT L L N N +S TP G N DE + GN
Sbjct: 190 VLAKLTNLESLIATN---NQISDITP-LGILTNLDELSLNGN 227
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L KL EL L N + ++SP L+ LT + L+L+ NQL S I+N+K+L YL+L N
Sbjct: 260 LTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 315
Query: 131 NFEGSFSFNSLKNHSKLQ 148
N +SL +KLQ
Sbjct: 316 NISDISPVSSL---TKLQ 330
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 3/140 (2%)
Query: 330 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQF 389
+ F T L WL L+ N T L L L+NN L F +L+ L
Sbjct: 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 390 LDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS 447
L + NQL S+PS L+ L+ L ++ N GA + ++L L L NQ
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 448 IPIWINEFSYLGILLLRGNQ 467
+ L + L GNQ
Sbjct: 171 PHGAFDRLGKLQTITLFGNQ 190
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNA 419
T L L+L N L F +L+ L L ++ NQL+ F+ L+ L +LY+ N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 420 FNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW-INEFSYLGILLLRGNQLKGNIPNQLCH 478
G R + L L L NQ SIP ++ + L L L NQL+
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 479 LSLLNILDLSYNKFN 493
L L + L N+F+
Sbjct: 178 LGKLQTITLFGNQFD 192
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
L KL EL L+ N L + LT+++ L LS+NQL + L+ ++L
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 130 NNFEGS 135
N F+ S
Sbjct: 189 NQFDCS 194
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 47 SVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN 106
SV+ S +K + +P + +T +LDL N L S LT +++L L+ N
Sbjct: 20 SVDCSSKKLTAIPSNIPADTK--------KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 107 QLTGNLQSVIANIKSLEYLSLDDNNFEG--SFSFNSLKNHSKLQVFKLSNSLVKIETEEF 164
+L + +K+LE L + DN + F+ L N ++L++ + N L + F
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR--NQLKSLPPRVF 129
Query: 165 PGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTL 223
L +L L+L L +LP + +L L+ + L +N+L+ P T+L TL
Sbjct: 130 DSL--TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTL 186
Query: 224 YLLNNSLS 231
L NN L
Sbjct: 187 KLDNNQLK 194
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 3/164 (1%)
Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE-LDLSNNMLYGQIPHWFGNLSGLQFL 390
F T L LYLN+N + G+ K LE L +++N L F L L L
Sbjct: 56 AFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 391 DISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
+ NQL P F+ L+ L L + N G + +SL L L +NQ
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174
Query: 450 IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
++ + L L L NQLK L L +L L N ++
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
VF + T L +L L N + K TSL EL L NN L F L+ L+ L
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 392 ISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGAL 428
+ NQL +F+ L L+ L + N ++ + G +
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII 225
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 157/386 (40%), Gaps = 63/386 (16%)
Query: 324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGN 383
+N + N TNL L L NN + D L T+L L+LS+N + I G
Sbjct: 94 NNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI-SDISALSG- 149
Query: 384 LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
L+ LQ L+ NQ++ P + NL++L RL + N S L + ++L L +NQ
Sbjct: 150 LTSLQQLNFG-NQVTDLKPLA-NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ 205
Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC-FAN 502
S P+ I + L L L GNQLK L L+ L LDL+ N+ + P+
Sbjct: 206 ISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK 261
Query: 503 VTLWTLGQAAGSFVLWETTQRIS--TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKR 560
+T LG S IS A N L ++++ S + + ++T
Sbjct: 262 LTELKLGANQIS--------NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT--L 311
Query: 561 YESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI 620
Y + DI S + SL++++ L S+N +S SL+NL I
Sbjct: 312 YFNNISDI-------------------SPVSSLTKLQRLFFSNNKVSDV--SSLANLTNI 350
Query: 621 ESLDLSHNDLSGQIP-PQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC 679
L HN +S P LT + L + ++ + P NY N +
Sbjct: 351 NWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN--APV------------NYKANVSI- 395
Query: 680 GPRINKSCTTVLEPPETPSDGAEEDE 705
P K+ T L P T SDG E
Sbjct: 396 -PNTVKNVTGALIAPATISDGGSYTE 420
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L KL EL L N + ++SP L+ LT + L+L+ NQL S I+N+K+L YL+L N
Sbjct: 259 LTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 314
Query: 131 NFEGSFSFNSLKNHSKLQVFKLSNSLV 157
N +SL +KLQ SN+ V
Sbjct: 315 NISDISPVSSL---TKLQRLFFSNNKV 338
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 96/411 (23%), Positives = 162/411 (39%), Gaps = 72/411 (17%)
Query: 66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
T + L KLV++ L NN ++P L+NLT++ L L +NQ+T + N+ +L L
Sbjct: 79 TPLKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRL 134
Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
L N ++L + LQ N + ++ P L L + S + +
Sbjct: 135 ELSSNTIS---DISALSGLTSLQQLNFGNQVTDLK-------PLANLTTLERLDISSNKV 184
Query: 186 P--SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
S L +L + ++N++ P +L N LD L L N L L +S +L
Sbjct: 185 SDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 240
Query: 244 LRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNFS 303
+D+++N+ S P +S + +L L L +N S
Sbjct: 241 TDLDLANNQISNLAP---------------------------LSGLTKLTELKLGANQIS 273
Query: 304 GELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 363
P +N L+ N NL +L L N+ S +S T L
Sbjct: 274 NISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKL 328
Query: 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF--- 420
L SNN + NL+ + +L NQ+S P + NL+ + +L ++ A+
Sbjct: 329 QRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQAWTNA 385
Query: 421 ------NGSIPGALRRSSS-----LTVLD---LRDNQFSGSIPIWINEFSY 457
N SIP ++ + T+ D + + ++P + NE SY
Sbjct: 386 PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSY 436
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 355 DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRR 412
D ++ +L LDLS L P F +LS LQ L+++ NQL SVP L+SL++
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQK 522
Query: 413 LYMHMNAFNGSIP 425
+++H N ++ S P
Sbjct: 523 IWLHTNPWDCSCP 535
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 381 FGNLSGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGS-IPGALRRSSSLTVLD 438
F +L L +LDIS + FN LSSL L M N+F + +P +LT LD
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 439 LRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN 474
L Q P N S L +L + NQLK ++P+
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPD 511
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQL 397
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
LDLS N L S + ++VLDLS ++ ++ L L L N + S
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 91
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
+ + S LQ LV +ET E FP LK LN+ + + + LP +
Sbjct: 92 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 190 LHQLDLRFIDLSHNKLQGTF 209
+ +L +DLS NK+Q +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIY 165
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSN-LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 128
EL+ L LDLS+ L LSP N L+ ++VL+++SNQL + + SL+ + L
Sbjct: 468 ELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 129 DNNFEGS 135
N ++ S
Sbjct: 527 TNPWDCS 533
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFL 390
VF + NL +L +++ H + +SL L ++ N +P F L L FL
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 391 DISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
D+S+ QL P++FN LSSL+ L M N F + +SL VLD N S
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 450 IWINEF-SYLGILLLRGNQLKGNIPNQ 475
+ F S L L L N +Q
Sbjct: 560 QELQHFPSSLAFLNLTQNDFACTCEHQ 586
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQL 397
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
LDLS N L S + ++VLDLS ++ ++ L L L N + S
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 115
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
+ + S LQ LV +ET E FP LK LN+ + + + LP +
Sbjct: 116 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169
Query: 190 LHQLDLRFIDLSHNKLQGTF 209
+ +L +DLS NK+Q +
Sbjct: 170 SNLTNLEHLDLSSNKIQSIY 189
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 43/203 (21%)
Query: 38 FPKGSITDFSVEDSCRKTSGVPLTVFVNTGICE-LKKLVELDLSKNNLYGHLSPC----L 92
FP S+T S++ + ++ + TG E L+ L ELDLS +++ S C L
Sbjct: 324 FP--SLTHLSIKGNTKRLE-------LGTGCLENLENLRELDLSHDDI--ETSDCCNLQL 372
Query: 93 SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL 152
NL+H++ L+LS N+ LE L L + + + +N L+V L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 153 SNSLVKIETEE-FPGLPEYQ-------------------------LKALNLRNCSLHALP 186
S+SL+ I +E+ F GLP Q L+ L L C L ++
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
Query: 187 SFLLHQLD-LRFIDLSHNKLQGT 208
L + +DLSHN+L +
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSS 515
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 52 CRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN 111
C + S L NT L L LDL++ +Y + + L L++N L
Sbjct: 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96
Query: 112 LQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPEY 170
++ ++ K+L++L S F L N L+ L SN + I+ + G P
Sbjct: 97 AETALSGPKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTE 153
Query: 171 QLKALNLRNCSLHAL 185
+LK L+ +N ++H L
Sbjct: 154 KLKVLDFQNNAIHYL 168
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 344 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS 403
+++ S + +GL + S+ ++L + + + F SGLQ LD++ LS
Sbjct: 238 MDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296
Query: 404 SFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
LS+L++L + N F + SLT L ++ N
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFL 390
VF + NL +L +++ H + +SL L ++ N +P F L L FL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 391 DISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
D+S+ QL P++FN LSSL+ L M N F + +SL VLD N S
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 450 IWINEF-SYLGILLLRGNQLKGNIPNQ 475
+ F S L L L N +Q
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQ 562
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQL 397
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
LYL+ N F+ + LS L +DLSNN + F N++ L L +S N+L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 402 PSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
P +F+ L SLR L +H N + GA S+L+ L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQ 637
+P E+ + + ++LS+N +S QS SN+ + +L LS+N L IPP+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPR 96
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 556 MTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLS 615
+ K +YK ++T +D S N ++ +++++ L LS+N L P++
Sbjct: 45 LVPKELSNYK-----HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 616 NLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHL 654
LK + L L ND+S +L+ LS+ + N L
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 131
K L +DLS N + + SN+T + L LS N+L +KSL LSL N+
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 132 F----EGSFSFNSLKNH 144
EG+F+ S +H
Sbjct: 114 ISVVPEGAFNDLSALSH 130
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 78 DLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFS 137
DLSK+ ++ L S+ T ++ L L+ N++ + + L L+L NF GS
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFLGSID 339
Query: 138 FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
+N KL+V LS N + + + F GLP LK L L L ++P + +L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLP--NLKELALDTNQLKSVPDGIFDRL 394
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 124/338 (36%), Gaps = 82/338 (24%)
Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS---FNLSSLRRLYMHMNAFNG 422
+DLS N + F L LQFL + E Q G V + LSSL L + N F
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKV-EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSI--PIWINEFSYLGILLLRGNQLKGNIPNQL-CHL 479
GA ++L VL L G++ + + L +L+LR N +K P ++
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 480 SLLNILDLSYNKFNGPIPVC----------------FANVTLWTLGQAAGSFVLWETTQR 523
++LDL+ FN +C +++TL + + W ++
Sbjct: 154 RRFHVLDLT---FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE------YWLGWEK 204
Query: 524 ISTEFEAYYNSTLELS-------EVKHFY------------------------------- 545
F+ +TL+LS K F+
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 546 --------KASGQRGIEFMTKKRYESYKGDILNYMTGLD---FSCNELTGDIPSEIGSLS 594
+ASG + + K + K + ++ T L+ + NE+ + L+
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632
+ LNLS NFL + NL +E LDLS+N +
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 332 VFPNSTNLCWLYLNNNH----FSGKIQDGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSG 386
VF + NL +L +++ H F+G I +GLS SL L ++ N +P F L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNG-IFNGLS---SLEVLKMAGNSFQENFLPDIFTELRN 176
Query: 387 LQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445
L FLD+S+ QL P++FN LSSL+ L M N F + +SL VLD N
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 446 GSIPIWINEF-SYLGILLLRGNQLKGNIPNQ 475
S + F S L L L N +Q
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
L+ L L LS+N++ + L ++ L+L N+LT + L+ L L +
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 130 NNFEG--SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
N E S++FN + + +L + +L L I F GL L+ LNL C+L +P+
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGL--SNLRYLNLAMCNLREIPN 202
Query: 188 FLLHQLDLRFIDLSHNKLQGTFP 210
L + L +DLS N L P
Sbjct: 203 -LTPLIKLDELDLSGNHLSAIRP 224
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 237 PSSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEV-RIPSSMSEMKRLESL 295
PS L +D S+N + + N G + E+ +I ++MK L+ L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379
Query: 296 DLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD 355
D+S N+ S + + G+ + S L L +++N + I
Sbjct: 380 DISQNSVSYDEKK--------------------GDCSWTKS--LLSLNMSSNILTDTIFR 417
Query: 356 GLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRL 413
L + LDL +N + IP L LQ L+++ NQL SVP L+SL+++
Sbjct: 418 CLPPRIKV--LDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKI 473
Query: 414 YMHMNAFNGSIP 425
++H N ++ S P
Sbjct: 474 WLHTNPWDCSCP 485
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 358 SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ---LSGSVPSSFNLSSLRRLY 414
SK + L LD SNN+L + G+L+ L+ L + NQ LS + + SL++L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 415 MHMNAFN-GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP 473
+ N+ + G + SL L++ N + +I + + +L L N++K IP
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IP 437
Query: 474 NQLCHLSLLNILDLSYNKFNG 494
Q+ L L L+++ N+
Sbjct: 438 KQVVKLEALQELNVASNQLKS 458
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
D+ T L+ S N ++ S+I SLS++R L +SHN + + +E LDLS
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77
Query: 627 HNDLSG-QIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGG 674
HN L P + L + ++S+N P +F N + + G
Sbjct: 78 HNKLVKISCHPTVN----LKHLDLSFNAFDA-LPICKEFGNMSQLKFLG 121
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSE-IRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
+ + LD S N ++ D S ++ + +LN+S N L+ +I + L I+ LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430
Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSG 656
N + IP Q+ +L L NV+ N L
Sbjct: 431 NKIKS-IPKQVVKLEALQELNVASNQLKS 458
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 155/384 (40%), Gaps = 59/384 (15%)
Query: 324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGN 383
+N + N TNL L L NN + D L T+L L+LS+N + I G
Sbjct: 98 NNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI-SDISALSG- 153
Query: 384 LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
L+ LQ L NQ++ P + NL++L RL + N S L + ++L L +NQ
Sbjct: 154 LTSLQQLSFG-NQVTDLKPLA-NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ 209
Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC-FAN 502
S P+ I + L L L GNQLK L L+ L LDL+ N+ + P+
Sbjct: 210 ISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK 265
Query: 503 VTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE 562
+T LG S + A N L ++++ S + + ++T Y
Sbjct: 266 LTELKLGANQISNI------SPLAGLTALTNLELNENQLEDISPISNLKNLTYLT--LYF 317
Query: 563 SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIES 622
+ DI S + SL++++ L ++N +S SL+NL I
Sbjct: 318 NNISDI-------------------SPVSSLTKLQRLFFANNKVSDV--SSLANLTNINW 356
Query: 623 LDLSHNDLSGQIP-PQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGP 681
L HN +S P LT + L + ++ + P NY N + P
Sbjct: 357 LSAGHNQISDLTPLANLTRITQLGLNDQAWTN--APV------------NYKANVSI--P 400
Query: 682 RINKSCTTVLEPPETPSDGAEEDE 705
K+ T L P T SDG E
Sbjct: 401 NTVKNVTGALIAPATISDGGSYTE 424
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L KL EL L N + ++SP L+ LT + L+L+ NQL S I+N+K+L YL+L N
Sbjct: 263 LTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 318
Query: 131 NFEGSFSFNSLKNHSKLQVFKLSNSLV 157
N +SL +KLQ +N+ V
Sbjct: 319 NISDISPVSSL---TKLQRLFFANNKV 342
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 162/411 (39%), Gaps = 72/411 (17%)
Query: 66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
T + L KLV++ L NN ++P L+NLT++ L L +NQ+T + N+ +L L
Sbjct: 83 TPLKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRL 138
Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
L N ++L + LQ N + ++ P L L + S + +
Sbjct: 139 ELSSNTIS---DISALSGLTSLQQLSFGNQVTDLK-------PLANLTTLERLDISSNKV 188
Query: 186 P--SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
S L +L + ++N++ P +L N LD L L N L L +S +L
Sbjct: 189 SDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 244
Query: 244 LRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNFS 303
+D+++N+ S P +S + +L L L +N S
Sbjct: 245 TDLDLANNQISNLAP---------------------------LSGLTKLTELKLGANQIS 277
Query: 304 GELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 363
P +N L+ N NL +L L N+ S +S T L
Sbjct: 278 NISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKL 332
Query: 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF--- 420
L +NN + NL+ + +L NQ+S P + NL+ + +L ++ A+
Sbjct: 333 QRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQAWTNA 389
Query: 421 ------NGSIPGALRRSSS-----LTVLD---LRDNQFSGSIPIWINEFSY 457
N SIP ++ + T+ D + + ++P + NE SY
Sbjct: 390 PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSY 440
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 348 HFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF 405
+F ++ D L+ T+L LD+S+N + L+ L+ L + NQ+S P
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI 214
Query: 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRG 465
L++L L ++ N G L ++LT LDL +NQ S P ++ + L L L
Sbjct: 215 -LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 466 NQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC-FANVTLWTL 508
NQ+ P L L+ L L+L+ N+ P+ N+T TL
Sbjct: 270 NQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 311
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L KL EL L N + ++SP L+ LT + L+L+ NQL S I+N+K+L YL+L N
Sbjct: 259 LTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 314
Query: 131 NFEGSFSFNSLKNHSKLQ 148
N +SL +KLQ
Sbjct: 315 NISDISPVSSL---TKLQ 329
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 581 ELTGDIPSEIGSLSEIRALNLSH--NFLSGSIPQSLSNLKMIESLDLSHNDLSG-QIPPQ 637
EL+ + S+I +LS + +L + N ++ P L+NL +E LD+S N +S + +
Sbjct: 135 ELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK 192
Query: 638 LTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN 675
LT L L N N +S TP G N DE + GN
Sbjct: 193 LTNLESLIATN---NQISDITP-LGILTNLDELSLNGN 226
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 154/403 (38%), Gaps = 99/403 (24%)
Query: 72 KKLVELDLSKNNLYGHLS----PCLSNLTH--IKVLDLSSN----QLTGNLQSVIANIKS 121
K L L+ N+LY +S C++ + +++LD+S N +TGN + I+ ++
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 122 LEYL----------------SLDDNNFEG---------------SFSFNS--LKNHSKLQ 148
+ D N F G FS NS + L+
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 149 VFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQ 206
V L+ N + KI E F GL L+ LNL L L S + L + +IDL N +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDN--LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 207 GTFPSWLLQNNT-----KLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSG----QL 257
++Q+ T KL TL L +N+L+ +PS + I +S NK L
Sbjct: 352 ------IIQDQTFKFLEKLQTLDLRDNALTTIHFIPS----IPDIFLSGNKLVTLPKINL 401
Query: 258 PGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXX 317
N+ L F +R+P L+ L L+ N FS Q
Sbjct: 402 TANLIH-LSENRLENLDILYFLLRVP-------HLQILILNQNRFSSCSGDQTPSENPSL 453
Query: 318 XXXXXXDNHLQGEVVFPNSTNLCW-----------LYLNNNHFSGKIQDGLSKATSLLEL 366
+N LQ T LCW LYLN+N+ + S T+L L
Sbjct: 454 EQLFLGENMLQ----LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
Query: 367 DLSNNML----YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF 405
L++N L + +P + L+ LDIS NQL P F
Sbjct: 510 SLNSNRLTVLSHNDLP------ANLEILDISRNQLLAPNPDVF 546
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 38/173 (21%)
Query: 593 LSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS----GQIPPQLTELNFLSNFN 648
LS ++ L L+HN+L+ P S+L + L L+ N L+ +P L L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL------D 532
Query: 649 VSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR-------INKSCTTVLEPPET----- 696
+S N L P P+ F + + N +C +N + T+ PP
Sbjct: 533 ISRNQLLAPNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590
Query: 697 ------------PSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSY 737
++G +E+E + + F+ +VT+ L L IL V +
Sbjct: 591 PDSFSGVSLFSLSTEGCDEEEVLKSLK--FSLFIVCTVTLTLFLMTILTVTKF 641
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 71 LKKLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQL 108
LK L LDLSKN + +L P L +K +D SSNQ+
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 536 LELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSE 595
L+ + +K+F+K + MTK ++ + LD S N L + +E
Sbjct: 384 LQRNGLKNFFK------VALMTKN---------MSSLETLDVSLNSLNSHAYDRTCAWAE 428
Query: 596 -IRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHL 654
I LNLS N L+GS+ + L ++ LDL HN+ IP +T L L NV+ N L
Sbjct: 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 655 SG 656
Sbjct: 486 KS 487
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML--YGQIPHWFGNLSGLQ 388
V P+ ++ +L N F+ + G S L L L N L + ++ N+S L+
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406
Query: 389 FLDISENQLSGSV--PSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG 446
LD+S N L+ + S+ L + N GS+ L + VLDL +N+
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-M 463
Query: 447 SIPIWINEFSYLGILLLRGNQLKG 470
SIP + L L + NQLK
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKS 487
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 82 NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSL 141
N + G L +L H LDLS N L+ S + SL+YL+L N ++ +
Sbjct: 89 NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 142 KNHSKLQVFKLSN--SLVKIETEEFPGLP---EYQLKALNLRNCSLHALPSFL-LHQLDL 195
N + LQ ++ N + +I +F GL E ++KAL+LRN +L S +H L L
Sbjct: 146 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 205
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ 396
NL L L ++ + D SL LDLS+N L WFG LS L++L++ N
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Query: 397 -----LSGSVPSSFNLSSLR 411
++ P+ NL +LR
Sbjct: 136 YQTLGVTSLFPNLTNLQTLR 155
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 327 LQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG 386
L+ +F L + +NN + + A+ + E+ L++N L F L
Sbjct: 47 LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106
Query: 387 LQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445
L+ L + N+++ SF LSS+R L ++ N PGA SL+ L+L N F+
Sbjct: 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Query: 446 GSIPI-WINEF 455
+ + W+ E+
Sbjct: 167 CNCYLAWLGEW 177
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 82 NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSL 141
N + G L +L H LDLS N L+ S + SL+YL+L N ++ +
Sbjct: 63 NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 142 KNHSKLQVFKLSN--SLVKIETEEFPGLP---EYQLKALNLRNCSLHALPSFL-LHQLDL 195
N + LQ ++ N + +I +F GL E ++KAL+LRN +L S +H L L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ 396
NL L L ++ + D SL LDLS+N L WFG LS L++L++ N
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 397 -----LSGSVPSSFNLSSLR 411
++ P+ NL +LR
Sbjct: 110 YQTLGVTSLFPNLTNLQTLR 129
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 349 FSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN 406
F ++ D L+ T+L LD+S+N + L+ L+ L + NQ+S P
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI- 219
Query: 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
L++L L ++ N G L ++LT LDL +NQ S P ++ + L L L N
Sbjct: 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275
Query: 467 QLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC-FANVTLWTL 508
Q+ P L L+ L L+L+ N+ P+ N+T TL
Sbjct: 276 QISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
L KL EL L N + ++SP L+ LT + L+L+ NQL S I+N+K+L YL+L N
Sbjct: 264 LTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN 319
Query: 131 NFEGSFSFNSLKNHSKLQ 148
N +SL +KLQ
Sbjct: 320 NISDISPVSSL---TKLQ 334
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 31/164 (18%)
Query: 71 LKKLVELDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
L L +LDLS N + P L H+ L L L + + +L+YL L D
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 130 NNFEG--SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
NN + +F L N + L + P +PE+ + LH+L
Sbjct: 138 NNLQALPDNTFRDLGNLTHL----------FLHGNRIPSVPEHAFRG-------LHSLDR 180
Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS 231
LLHQ N + P ++ +L TLYL N+LS
Sbjct: 181 LLLHQ----------NHVARVHPH-AFRDLGRLMTLYLFANNLS 213
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 31/193 (16%)
Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI--------------- 377
F + NL L+L++N +G + T L +LDLS+N +
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 378 ----------PHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPG 426
P F L+ LQ+L + +N L ++F +L +L L++H N
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486
A R SL L L N + P + L L L N L +P ++ L+ +
Sbjct: 171 AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEV----LVPLRS 225
Query: 487 LSYNKFNGPIPVC 499
L Y + N VC
Sbjct: 226 LQYLRLNDNPWVC 238
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN-QLSGS 400
++L+ N S +L L L +N L G F L+ L+ LD+S+N QL
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 401 VPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLG 459
P++F L L L++ PG R ++L L L+DN + L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 460 ILLLRGNQL 468
L L GN++
Sbjct: 156 HLFLHGNRI 164
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 329 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQ 388
G +F L +LYL +N+ + +L L L N + H F L L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 389 FLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF--- 444
L + +N ++ P +F +L L LY+ N + L SL L L DN +
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCD 239
Query: 445 SGSIPIW 451
+ P+W
Sbjct: 240 CRARPLW 246
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 123/305 (40%), Gaps = 22/305 (7%)
Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP-SSFNLSSLRRLYMHMNA 419
T L ELDL+ L G +P L+ L+ L +S N S+ N SL LY+ N
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 420 FNGSI-PGALRRSSSLTVLDLRDNQFSGS--IPIWINEFSYLGILLLRGNQLKGNIPNQL 476
+ G L + +L LDL N S + + S+L L L N+ G
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF 393
Query: 477 CHLSLLNILDLSYNKFNGPIPVC-FANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNST 535
L +LDL++ + + P F N+ + F L + Q + +
Sbjct: 394 KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF-LDTSNQHLLAGLPVLRHLN 452
Query: 536 LELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSE 595
L+ HF + +TK G + + SC L+ D SL +
Sbjct: 453 LK---GNHFQDGT-------ITKTNLLQTVGSLEVLILS---SCGLLSID-QQAFHSLGK 498
Query: 596 IRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
+ ++LSHN L+ SLS+LK I L+L+ N ++ P L L+ S N+S+N L
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLD 557
Query: 656 GPTPN 660
N
Sbjct: 558 CTCSN 562
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 91 CLSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSK 146
CL L +++ LDLS N + +LQ + N+ L+ L+L N G + K +
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQ--LKNLSHLQTLNLSHNEPLG-LQSQAFKECPQ 398
Query: 147 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKL 205
L++ L+ + + I + P + L+ LNL C L LL L LR ++L N
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 206 Q-GTFPSW-LLQNNTKLDTLYLLNNS-LSGNFQLPSSKHDLLRIDISHNKFS 254
Q GT LLQ L+ L L + LS + Q S + +D+SHN +
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 327 LQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG 386
L+ E TNL L L++NH + + +L LDLS+N L+ F +L
Sbjct: 54 LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113
Query: 387 LQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSS----LTVLDLRD 441
L+ L + N + ++F +++ L++LY+ N P L + + L +LDL
Sbjct: 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSS 172
Query: 442 NQFSG-------SIPIWINEFSYL 458
N+ +P W+ YL
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYL 196
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNH 653
+++R L+L+H L+ + L L ++ LDLSHN L +PP L L L S N
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA 497
Query: 654 L 654
L
Sbjct: 498 L 498
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNH 653
+++R L+L+H L+ + L L ++ LDLSHN L +PP L L L S N
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA 497
Query: 654 L 654
L
Sbjct: 498 L 498
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSL 614
+++T L + N LT ++P+EI +LS +R L+LSHN L+ S+P L
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
LDLS N L S + ++VLDLS ++ ++ L L L N + S
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 91
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
+ + S LQ LV +ET E FP LK LN+ + + + LP +
Sbjct: 92 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 190 LHQLDLRFIDLSHNKLQGTF 209
+ +L +DLS NK+Q +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIY 165
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQL 397
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
LDLS N L S + ++VLDLS ++ ++ L L L N + S
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 92
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
+ + S LQ LV +ET E FP LK LN+ + + + LP +
Sbjct: 93 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 190 LHQLDLRFIDLSHNKLQGTF 209
+ +L +DLS NK+Q +
Sbjct: 147 SNLTNLEHLDLSSNKIQSIY 166
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 29/117 (24%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQLSGSV------------------- 401
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 402 ---------PSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
P +F L+ L + N G R +SL + L N + S P
Sbjct: 186 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
LDLS N L S + ++VLDLS ++ ++ L L L N + S
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 93
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
+ + S LQ LV +ET E FP LK LN+ + + + LP +
Sbjct: 94 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 190 LHQLDLRFIDLSHNKLQGTF 209
+ +L +DLS NK+Q +
Sbjct: 148 SNLTNLEHLDLSSNKIQSIY 167
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 29/117 (24%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQLSGSV------------------- 401
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 402 ---------PSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
P +F L+ L + N G R +SL + L N + S P
Sbjct: 187 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
LDLS N L S + ++VLDLS ++ ++ L L L N + S
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 92
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
+ + S LQ LV +ET E FP LK LN+ + + + LP +
Sbjct: 93 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 190 LHQLDLRFIDLSHNKLQGTF 209
+ +L +DLS NK+Q +
Sbjct: 147 SNLTNLEHLDLSSNKIQSIY 166
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQL 397
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDL 630
IG L ++ LN++HN + S +P+ SNL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 362 SLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISENQL 397
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
LDLS N L S + ++VLDLS ++ ++ L L L N + S
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 93
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
+ + S LQ LV +ET E FP LK LN+ + + + LP +
Sbjct: 94 ALGAFSGLSSLQ------KLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 190 LHQLDLRFIDLSHNKLQGTF 209
+ +L +DLS NK+Q +
Sbjct: 148 SNLTNLEHLDLSSNKIQSIY 167
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
P +T + LYL +N + K++ G+ + T L LDL NN L F L+ L L
Sbjct: 28 IPTTTQV--LYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84
Query: 392 ISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421
+++NQL +F NL SL +++ N ++
Sbjct: 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 390 LDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
+D S L+ SVP+ ++ + LY++ N PG R + LT LDL +NQ +
Sbjct: 14 VDCSGKSLA-SVPTGIPTTT-QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71
Query: 450 IWINEFSYLGILLLRGNQLKGNIP-------NQLCHLSLLN 483
++ + L L L NQLK +IP L H+ LLN
Sbjct: 72 GVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 111
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
L +L LDL N L + LT + L L+ NQL + N+KSL ++ L +
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
Query: 130 NNFEGSFS 137
N ++ + S
Sbjct: 112 NPWDCACS 119
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
P +T + LYL +N + K++ G+ + T L LDL NN L F L+ L L
Sbjct: 36 IPTTTQV--LYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 92
Query: 392 ISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421
+++NQL +F NL SL +++ N ++
Sbjct: 93 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 123
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 390 LDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
+D S L+ SVP+ ++ + LY++ N PG R + LT LDL +NQ + +P
Sbjct: 22 VDCSGKSLA-SVPTGIPTTT-QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP 78
Query: 450 IWI-NEFSYLGILLLRGNQLKGNIP-------NQLCHLSLLN 483
+ ++ + L L L NQLK +IP L H+ LLN
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 119
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
L +L LDL N L + LT + L L+ NQL + N+KSL ++ L +
Sbjct: 60 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 119
Query: 130 NNFEGSFS 137
N ++ + S
Sbjct: 120 NPWDCACS 127
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 41/206 (19%)
Query: 53 RKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN------ 106
R+ + VP ++ VNT L+L +N++ + +L H+++L LS N
Sbjct: 24 RELAEVPASIPVNTRY--------LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIE 75
Query: 107 -------------QLTGNLQSVIANIKSLEYLS------LDDNNFEG--SFSFNSLKNHS 145
+L N + + ++ EYLS L +N E S++FN + +
Sbjct: 76 VGAFNGLPSLNTLELFDNRLTTVPT-QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 146 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKL 205
+L + +L L I F GL L+ LNL C+L +P+ L + L ++LS N+L
Sbjct: 135 RLDLGELKR-LEYISEAAFEGL--VNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRL 190
Query: 206 QGTFPSWLLQNNTKLDTLYLLNNSLS 231
P Q T L L+L++ ++
Sbjct: 191 DLIRPG-SFQGLTSLRKLWLMHAQVA 215
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
L+ S N L P L+ +R L L H ++ + +LK +E L+LSHN+L
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
Query: 635 PPQLTELNFLSNFNVSYN 652
T L+ L ++++N
Sbjct: 243 HDLFTPLHRLERVHLNHN 260
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
P +T + LYL +N + K++ G+ + T L LDL NN L F L+ L L
Sbjct: 28 IPTTTQV--LYLYDNRIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84
Query: 392 ISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421
+++NQL +F NL SL +++ N ++
Sbjct: 85 LNDNQLKSIPRGAFDNLRSLTHIWLLNNPWD 115
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 390 LDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
+D S L+ SVP+ ++ + LY++ N PG R + LT LDL +NQ +
Sbjct: 14 VDCSGKSLA-SVPTGIPTTT-QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71
Query: 450 IWINEFSYLGILLLRGNQLKGNIP-------NQLCHLSLLN 483
++ + L L L NQLK +IP L H+ LLN
Sbjct: 72 GVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLN 111
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
L +L LDL N L + LT + L L+ NQL + N++SL ++ L +
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLN 111
Query: 130 NNFEGSFS 137
N ++ + S
Sbjct: 112 NPWDCACS 119
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN-QLSGS 400
++L+ N S +L L L +N+L F L+ L+ LD+S+N QL
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 401 VPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLG 459
P++F+ L L L++ PG R ++L L L+DN + L
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 155
Query: 460 ILLLRGNQL 468
L L GN++
Sbjct: 156 HLFLHGNRI 164
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 54 KTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNL 112
+ S VP F G+ L +L L N H+ P +L + L L +N L+
Sbjct: 163 RISSVPERAF--RGLHSLDRL----LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 113 QSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQ 171
+A +++L+YL L+DN + L + LQ F+ S+S V + G +
Sbjct: 217 TEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQRLAGRDLKR 274
Query: 172 LKALNLRNCSL 182
L A +L+ C++
Sbjct: 275 LAANDLQGCAV 285
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 324 DNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF 381
DN LQ + F + NL L+L+ N S + SL L L N + PH F
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Query: 382 GNLSGLQFLDISENQLSGSVPSSFNLSSLRRL-YMHMN 418
+L L L + N LS ++P+ L+ LR L Y+ +N
Sbjct: 197 RDLGRLMTLYLFANNLS-ALPTE-ALAPLRALQYLRLN 232
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN-QLSGS 400
++L+ N S +L L L +N+L F L+ L+ LD+S+N QL
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 401 VPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLG 459
P++F+ L L L++ PG R ++L L L+DN + L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 460 ILLLRGNQL 468
L L GN++
Sbjct: 157 HLFLHGNRI 165
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 54 KTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNL 112
+ S VP F G+ L +L L N H+ P +L + L L +N L+
Sbjct: 164 RISSVPERAF--RGLHSLDRL----LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 113 QSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQ 171
+A +++L+YL L+DN + L + LQ F+ S+S V + G +
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQRLAGRDLKR 275
Query: 172 LKALNLRNCS 181
L A +L+ C+
Sbjct: 276 LAANDLQGCA 285
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 324 DNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF 381
DN LQ + F + NL L+L+ N S + SL L L N + PH F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 382 GNLSGLQFLDISENQLSGSVPSSFNLSSLRRL-YMHMN 418
+L L L + N LS ++P+ L+ LR L Y+ +N
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTE-ALAPLRALQYLRLN 233
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT--------GNLQ---- 113
T + L K+ EL+LS N L ++ L IK LDL+S Q+T NLQ
Sbjct: 85 TPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 142
Query: 114 --------SVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIET-EE 163
S +A + +L+YLS+ +N L N SKL + N + I
Sbjct: 143 DLNQITNISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTLRADDNKISDISPLAS 199
Query: 164 FPGLPEYQLK 173
P L E LK
Sbjct: 200 LPNLIEVHLK 209
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 41/206 (19%)
Query: 53 RKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN------ 106
R+ + VP ++ VNT L+L +N++ + +L H+++L LS N
Sbjct: 24 RELAEVPASIPVNTRY--------LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIE 75
Query: 107 -------------QLTGNLQSVIANIKSLEYLS------LDDNNFEG--SFSFNSLKNHS 145
+L N + + ++ EYLS L +N E S++FN + +
Sbjct: 76 VGAFNGLPSLNTLELFDNRLTTVPT-QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 146 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKL 205
+L + +L L I F GL L+ LNL C+L +P+ L + L ++LS N+L
Sbjct: 135 RLDLGELKR-LEYISEAAFEGL--VNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRL 190
Query: 206 QGTFPSWLLQNNTKLDTLYLLNNSLS 231
P Q T L L+L++ ++
Sbjct: 191 DLIRPG-SFQGLTSLRKLWLMHAQVA 215
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
L+ S N L P L+ +R L L H ++ + +LK +E L+LSHN+L
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
Query: 635 PPQLTELNFLSNFNVSYN 652
T L+ L ++++N
Sbjct: 243 HDLFTPLHRLERVHLNHN 260
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
D+ + +T L+ + N+L P+ S++ L+ N +S P+ L +++ L+L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 627 HNDLSGQIPPQ-------LTELNFLSN 646
HN+LS QI Q LTEL+ +SN
Sbjct: 82 HNELS-QISDQTFVFCTNLTELDLMSN 107
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 122/332 (36%), Gaps = 68/332 (20%)
Query: 346 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNL--SGLQFLDISENQLSGSVPS 403
N H + K+ LS TS+ L L+NN L F L + L LD+S N L
Sbjct: 208 NPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNG 266
Query: 404 SFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW----INEFS-- 456
SF+ L SLR L + N P + S+L L L+ S+ + I++FS
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQ 326
Query: 457 ---YLGILLLRGNQLKGNIPNQLCHLSLLNILDLS-----YNKFNGPIPVCFANVTLWTL 508
YL L + N + N L L L LS V A+ L TL
Sbjct: 327 WLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTL 386
Query: 509 GQ--------AAGSFV-----------LWETTQRISTE--------FEAY--YNSTLELS 539
A G+F L E Q++S + FE Y YN L+LS
Sbjct: 387 NLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLS 446
Query: 540 EVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRAL 599
S QR + +R DI PS L + L
Sbjct: 447 TSSFALVPSLQR----LMLRRVALKNVDI-----------------SPSPFRPLRNLTIL 485
Query: 600 NLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631
+LS+N ++ L L+ +E LD HN+L+
Sbjct: 486 DLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHN 628
IG L ++ LN++HNF+ S +P SNL + +DLS+N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
+DLS N L S SN + ++ LDLS ++ + L L L N + SF
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SF 90
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
S S + L+ +LV +ET E FP LK LN+ + +H+ LP++
Sbjct: 91 SPGSFSGLTSLE------NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 144
Query: 190 LHQLDLRFIDLSHNKLQ 206
+ +L +DLS+N +Q
Sbjct: 145 SNLTNLVHVDLSYNYIQ 161
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 590 IGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHN 628
IG L ++ LN++HNF+ S +P SNL + +DLS+N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
+DLS N L S SN + ++ LDLS ++ + L L L N + SF
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SF 95
Query: 137 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLHA--LPSFL 189
S S + L+ +LV +ET E FP LK LN+ + +H+ LP++
Sbjct: 96 SPGSFSGLTSLE------NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149
Query: 190 LHQLDLRFIDLSHNKLQ 206
+ +L +DLS+N +Q
Sbjct: 150 SNLTNLVHVDLSYNYIQ 166
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 361 TSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHM 417
+S L+L +N L +PH F L+ L L +S+NQ+ S+P L+ L LY+H
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85
Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
N G + + L L L NQ S+P
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVP 116
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 27/125 (21%)
Query: 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT--------GNLQ--------- 113
L K+ EL+LS N L ++S ++ L IK LDL+S Q+T NLQ
Sbjct: 84 LTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 141
Query: 114 ---SVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIET-EEFPGLP 168
S +A + +L+YLS+ + L N SKL K N + I P L
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKISDISPLASLPNLI 198
Query: 169 EYQLK 173
E LK
Sbjct: 199 EVHLK 203
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 388 QFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG 446
Q L ++ NQ++ P F+ L +L++LY + N G + + LT LDL DN
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK- 94
Query: 447 SIP 449
SIP
Sbjct: 95 SIP 97
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 342 LYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS 400
L+LNNN + K++ G+ +L +L ++N L F L+ L LD+++N L
Sbjct: 38 LWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 401 VPSSF-NLSSLRRLYMHMNAFN 421
+F NL SL +Y++ N ++
Sbjct: 97 PRGAFDNLKSLTHIYLYNNPWD 118
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
D+ +T L+ + N+L + S++ +L++ N +S P+ L M++ L+L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 627 HNDLSG------QIPPQLTELNFLSN 646
HN+LS LTEL+ +SN
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSN 107
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
D+ +T L+ + N+L + S++ +L++ N +S P+ L M++ L+L
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 627 HNDLSG------QIPPQLTELNFLSN 646
HN+LS LTEL+ +SN
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSN 112
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 68 ICELKKLVELDLSKNNLYGHLSPCLSN---------LTHIKVLDLSSNQLTGNLQSVIAN 118
IC + LDLS+N +L+ C SN LT + L+ +N+LT + ++
Sbjct: 70 ICTSNNITTLDLSQNTNLTYLA-CDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQ 125
Query: 119 IKSLEYLSLDDNNF-EGSFSFNS----LKNHSKLQVFKLS----NSLVKIETE--EFPGL 167
L YL+ N E S N+ L H ++ KL L ++ + L
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185
Query: 168 PEYQLKALNLRNCSLHALPSFLLHQ-LDLRFIDLSHNKL---------QGTFPSWLLQNN 217
Q K LN NC + + L+Q + L F+D S NKL Q T+ +
Sbjct: 186 DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPL 245
Query: 218 TKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHN 251
T+LD ++LS L + DLL ID++HN
Sbjct: 246 TELDV-----STLSKLTTLHCIQTDLLEIDLTHN 274
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
D+ +T L+ + N+L + S++ +L++ N +S P+ L M++ L+L
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 627 HNDLSG------QIPPQLTELNFLSN 646
HN+LS LTEL+ +SN
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSN 117
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDI 392
NL L L +N + +D S SL LDLS N L WF LS L FL++
Sbjct: 50 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 382 GNLSGLQFLDISENQLSG------SVPS------SFN------------LSSLRRLYMHM 417
G L L LD+S NQL ++P+ SFN L L+ LY+
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL 468
N PG L + L L L +NQ + +N L LLL+ N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 382 GNLSGLQFLDISENQLSG------SVPS------SFN------------LSSLRRLYMHM 417
G L L LD+S NQL ++P+ SFN L L+ LY+
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL 468
N PG L + L L L +NQ + +N L LLL+ N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 28/199 (14%)
Query: 67 GICELKKLVE-LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
+ +L L+E L +S N L P L N + +K++D+ +N +L+ + SLE++
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNN----SLKKLPDLPPSLEFI 178
Query: 126 SLDDNNFEGSFSFNSLKNHSKL-QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
+ +N E L+N L ++ +NSL K+ P LP L+++ N L
Sbjct: 179 AAGNNQLE---ELPELQNLPFLTAIYADNNSLKKL-----PDLP-LSLESIVAGNNILEE 229
Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
LP L L + N L T P L+ L + +N L+ +LP S L
Sbjct: 230 LPE--LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPELPQS---LT 280
Query: 245 RIDISHNKFSG--QLPGNM 261
+D+S N FSG +LP N+
Sbjct: 281 FLDVSENIFSGLSELPPNL 299
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 382 GNLSGLQFLDISENQLSG------SVPS------SFN------------LSSLRRLYMHM 417
G L L LD+S NQL ++P+ SFN L L+ LY+
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL 468
N PG L + L L L +NQ + +N L LLL+ N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 382 GNLSGLQFLDISENQLSG------SVPS------SFN------------LSSLRRLYMHM 417
G L L LD+S NQL ++P+ SFN L L+ LY+
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL 468
N PG L + L L L +NQ + +N L LLL+ N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDI 392
NL L L +N + +D S SL LDLS N L WF LS L FL++
Sbjct: 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 151/394 (38%), Gaps = 90/394 (22%)
Query: 60 LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
LT G+C++ + ++L K+ S T ++ LDL++ L G L S I +
Sbjct: 242 LTSATFEGLCDMS-VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGM 299
Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRN 179
SL+ L L+ N+F+ L +I FP L + +K N+R
Sbjct: 300 NSLKKLVLNANSFD---------------------QLCQINAASFPSLRDLYIKG-NMRK 337
Query: 180 CSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 238
L + L +L+ L+ +DLSH+ ++ S N QL +
Sbjct: 338 LDL---GTRCLEKLENLQKLDLSHSDIEA---------------------SDCCNLQLKN 373
Query: 239 SKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSS-MSEMKRLESLDL 297
+H L +++S+N+ G L K P V+ P S + L L+L
Sbjct: 374 LRH-LQYLNLSYNEPLG-LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 298 SSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL 357
S + HL + +L L L N F QDG
Sbjct: 432 SH------------------CLLDTSNQHLLAGL-----QDLRHLNLQGNSF----QDGS 464
Query: 358 SKATSLLE-------LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL 410
T+LL+ L LS+ L F L + LD+S N L+G + LS L
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA--LSHL 522
Query: 411 RRLYMHMNAFNGSI--PGALRRSSSLTVLDLRDN 442
+ LY++M + N I P L S ++++L N
Sbjct: 523 KGLYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQ 637
SCN L+ D + G L + L+LSHN L+G +LS+LK + L+++ N++ P
Sbjct: 484 SCNLLSIDQQAFHG-LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHL 541
Query: 638 LTELNFLSNFNVSYNHLSGPTPN 660
L L+ S N+S+N L N
Sbjct: 542 LPALSQQSIINLSHNPLDCTCSN 564
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
L L LY+ N L R + L L L DNQ S +P+ + L L L N
Sbjct: 128 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAC--LTKLQNLYLSKN 183
Query: 467 QLKGNIPNQLCHLSLLNILDL-SYNKFNGPIPVCFANVTLWTLGQAAGSFVLWE 519
+ LC L L++L+L S N PI V T+ GS V E
Sbjct: 184 HISD--LRALCGLKNLDVLELFSQEALNKPINHQSNLVVPNTVKNTDGSLVTPE 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,679,624
Number of Sequences: 62578
Number of extensions: 939321
Number of successful extensions: 3045
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1958
Number of HSP's gapped (non-prelim): 677
length of query: 764
length of database: 14,973,337
effective HSP length: 106
effective length of query: 658
effective length of database: 8,340,069
effective search space: 5487765402
effective search space used: 5487765402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)