Query 045580
Match_columns 764
No_of_seqs 800 out of 5854
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.4E-65 7.4E-70 616.7 44.2 560 40-682 45-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.6E-57 7.7E-62 546.9 42.3 515 95-682 68-588 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 4.7E-44 1E-48 349.9 -12.1 500 24-656 19-542 (565)
4 KOG4194 Membrane glycoprotein 100.0 5.1E-38 1.1E-42 321.0 5.3 387 75-492 55-451 (873)
5 KOG4194 Membrane glycoprotein 100.0 8.2E-37 1.8E-41 312.2 7.5 374 219-662 79-459 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 4.9E-39 1.1E-43 314.9 -13.3 491 116-678 41-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.6E-37 9.9E-42 330.7 -3.4 470 66-654 15-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.3E-34 2.8E-39 311.9 -4.3 419 169-678 67-489 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.1E-33 1.1E-37 286.0 -0.8 365 172-635 9-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.2E-33 9.1E-38 286.7 -3.5 363 70-467 5-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3.1E-27 245.4 28.2 292 171-491 612-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.7E-22 5.9E-27 243.0 26.5 335 239-653 556-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.9E-25 1.5E-29 215.7 -3.5 257 236-494 61-360 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1.6E-21 3.5E-26 218.8 17.7 264 244-640 204-467 (788)
15 KOG4237 Extracellular matrix p 99.9 1.2E-23 2.6E-28 207.0 -1.0 398 73-490 68-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 8.2E-21 1.8E-25 213.1 17.4 263 172-500 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.6E-19 1E-23 200.6 13.3 223 219-493 179-401 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.2E-19 1.8E-23 198.6 13.0 246 171-445 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2E-19 4.2E-24 189.9 1.5 279 294-654 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.4E-23 184.1 3.0 280 270-630 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 3.4E-19 7.4E-24 155.8 -4.8 189 401-661 26-218 (264)
22 KOG0617 Ras suppressor protein 99.6 3E-17 6.6E-22 143.6 -4.3 167 428-665 29-196 (264)
23 PLN03150 hypothetical protein; 99.6 4.9E-15 1.1E-19 167.8 10.3 117 571-687 419-537 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2E-14 4.3E-19 148.9 -2.8 176 407-657 74-249 (722)
25 COG4886 Leucine-rich repeat (L 99.3 9.3E-12 2E-16 135.2 9.0 199 389-661 97-296 (394)
26 PLN03150 hypothetical protein; 99.2 2.2E-11 4.7E-16 138.2 8.0 91 570-660 442-533 (623)
27 COG4886 Leucine-rich repeat (L 99.2 3.8E-11 8.3E-16 130.4 7.5 202 365-640 97-299 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 8.8E-13 1.9E-17 136.9 -5.1 41 572-614 213-253 (722)
29 KOG3207 Beta-tubulin folding c 99.1 3.2E-11 6.8E-16 121.9 1.1 111 93-203 118-232 (505)
30 KOG1259 Nischarin, modulator o 99.1 4.2E-11 9E-16 114.8 1.6 86 571-659 330-416 (490)
31 KOG1259 Nischarin, modulator o 99.0 3.6E-11 7.8E-16 115.3 0.6 207 353-633 206-414 (490)
32 KOG1909 Ran GTPase-activating 99.0 8.2E-11 1.8E-15 115.8 3.0 164 68-231 26-226 (382)
33 KOG3207 Beta-tubulin folding c 99.0 7.7E-11 1.7E-15 119.1 2.8 207 172-400 123-341 (505)
34 KOG1909 Ran GTPase-activating 99.0 5.5E-11 1.2E-15 117.0 0.5 111 383-493 90-226 (382)
35 PF14580 LRR_9: Leucine-rich r 99.0 4.2E-10 9E-15 104.3 4.7 130 69-226 16-148 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.5E-15 105.3 3.4 109 191-303 17-126 (175)
37 PF13855 LRR_8: Leucine rich r 98.8 2.3E-09 5E-14 81.5 2.9 61 72-132 1-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 2.6E-09 5.6E-14 81.3 2.8 59 571-629 2-60 (61)
39 KOG0531 Protein phosphatase 1, 98.8 6.2E-10 1.3E-14 121.0 -1.0 243 338-659 73-322 (414)
40 KOG0531 Protein phosphatase 1, 98.7 2E-09 4.3E-14 117.0 -0.9 222 265-497 94-322 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 2.5E-08 5.5E-13 115.7 7.0 226 239-471 569-809 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.6 4.5E-08 9.8E-13 113.7 6.7 198 171-374 596-807 (889)
43 KOG4579 Leucine-rich repeat (L 98.4 1E-08 2.2E-13 87.4 -3.3 89 571-662 78-166 (177)
44 KOG2982 Uncharacterized conser 98.4 9E-08 2E-12 92.4 2.6 216 66-329 39-263 (418)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.3E-08 5E-13 96.4 -2.5 156 73-229 186-349 (419)
46 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.8E-13 109.1 -6.3 127 171-303 165-292 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.3 1.5E-08 3.3E-13 97.6 -5.4 36 265-300 209-244 (419)
48 KOG2982 Uncharacterized conser 98.3 1.6E-07 3.4E-12 90.7 0.8 87 70-156 69-157 (418)
49 KOG1859 Leucine-rich repeat pr 98.3 2.1E-08 4.6E-13 107.6 -6.0 127 242-374 165-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.3 7.6E-07 1.6E-11 85.0 4.0 162 69-231 27-227 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.0 1.2E-06 2.6E-11 83.7 0.8 159 239-398 90-285 (388)
52 KOG4579 Leucine-rich repeat (L 97.9 1.8E-06 3.8E-11 74.0 -0.7 112 172-311 29-143 (177)
53 PF12799 LRR_4: Leucine Rich r 97.9 8.2E-06 1.8E-10 56.6 2.4 36 595-631 2-37 (44)
54 PRK15386 type III secretion pr 97.8 5.6E-05 1.2E-09 79.1 7.4 73 406-491 50-123 (426)
55 KOG1644 U2-associated snRNP A' 97.7 5.4E-05 1.2E-09 69.7 6.0 83 265-350 41-126 (233)
56 PF12799 LRR_4: Leucine Rich r 97.7 4.6E-05 1E-09 52.8 4.2 36 171-206 2-37 (44)
57 KOG3665 ZYG-1-like serine/thre 97.7 2.2E-05 4.9E-10 89.2 3.5 108 72-182 122-232 (699)
58 KOG4341 F-box protein containi 97.7 1.9E-06 4.1E-11 87.5 -4.9 133 359-491 292-437 (483)
59 KOG4341 F-box protein containi 97.7 4.3E-06 9.4E-11 84.9 -2.7 277 72-348 138-437 (483)
60 KOG3665 ZYG-1-like serine/thre 97.6 1.5E-05 3.3E-10 90.6 1.2 157 71-230 59-232 (699)
61 KOG1644 U2-associated snRNP A' 97.6 8.1E-05 1.8E-09 68.5 5.2 81 195-279 21-101 (233)
62 PRK15386 type III secretion pr 97.5 0.00048 1E-08 72.2 9.7 55 216-276 50-104 (426)
63 PF13306 LRR_5: Leucine rich r 97.1 0.00097 2.1E-08 59.4 6.1 120 261-387 7-128 (129)
64 PF13306 LRR_5: Leucine rich r 97.1 0.0014 3E-08 58.4 6.6 83 67-153 7-89 (129)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00083 1.8E-08 64.9 2.7 87 68-156 39-127 (260)
66 KOG2739 Leucine-rich acidic nu 96.3 0.0029 6.3E-08 61.2 3.2 69 88-159 35-105 (260)
67 KOG2123 Uncharacterized conser 96.1 0.00025 5.4E-09 68.5 -5.3 86 315-402 19-105 (388)
68 KOG1947 Leucine rich repeat pr 96.0 0.0012 2.6E-08 74.0 -1.3 61 265-325 242-305 (482)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0036 7.9E-08 36.0 0.5 18 620-638 2-19 (22)
70 KOG2123 Uncharacterized conser 95.5 0.001 2.2E-08 64.5 -3.9 83 71-157 18-100 (388)
71 KOG1947 Leucine rich repeat pr 95.4 0.0074 1.6E-07 67.5 2.1 61 170-230 243-307 (482)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0067 1.4E-07 34.9 0.6 19 596-615 2-20 (22)
73 KOG0473 Leucine-rich repeat pr 92.8 0.0066 1.4E-07 57.4 -4.4 84 569-655 41-124 (326)
74 KOG4308 LRR-containing protein 92.0 0.0023 5E-08 69.9 -9.9 36 268-303 89-128 (478)
75 KOG4308 LRR-containing protein 91.4 0.0028 6.2E-08 69.2 -10.0 184 291-493 88-303 (478)
76 PF13504 LRR_7: Leucine rich r 90.8 0.17 3.7E-06 26.9 1.5 14 172-185 3-16 (17)
77 smart00369 LRR_TYP Leucine-ric 88.6 0.36 7.8E-06 28.9 1.9 16 617-632 1-16 (26)
78 smart00370 LRR Leucine-rich re 88.6 0.36 7.8E-06 28.9 1.9 16 617-632 1-16 (26)
79 smart00369 LRR_TYP Leucine-ric 88.4 0.47 1E-05 28.4 2.4 15 96-110 2-16 (26)
80 smart00370 LRR Leucine-rich re 88.4 0.47 1E-05 28.4 2.4 15 96-110 2-16 (26)
81 KOG0473 Leucine-rich repeat pr 86.1 0.021 4.6E-07 54.1 -6.7 87 66-156 36-122 (326)
82 PF13516 LRR_6: Leucine Rich r 85.8 0.22 4.8E-06 29.1 -0.1 13 97-109 3-15 (24)
83 KOG3864 Uncharacterized conser 81.4 0.43 9.3E-06 44.7 -0.2 82 72-154 101-185 (221)
84 KOG3864 Uncharacterized conser 77.2 0.49 1.1E-05 44.3 -1.2 81 409-489 102-185 (221)
85 smart00365 LRR_SD22 Leucine-ri 73.7 2.8 6E-05 25.2 1.8 15 617-631 1-15 (26)
86 smart00364 LRR_BAC Leucine-ric 68.4 3.5 7.6E-05 24.7 1.4 13 619-631 3-15 (26)
87 KOG4242 Predicted myosin-I-bin 66.5 52 0.0011 35.5 10.3 64 72-137 165-231 (553)
88 KOG3763 mRNA export factor TAP 63.2 4.2 9E-05 44.3 1.8 81 191-272 216-307 (585)
89 smart00368 LRR_RI Leucine rich 62.0 6.5 0.00014 24.0 1.8 13 97-109 3-15 (28)
90 TIGR00864 PCC polycystin catio 60.8 5.1 0.00011 52.2 2.3 37 624-660 1-37 (2740)
91 KOG3763 mRNA export factor TAP 59.5 7.9 0.00017 42.2 3.1 82 213-296 213-307 (585)
92 KOG4242 Predicted myosin-I-bin 39.6 1.4E+02 0.0031 32.3 8.4 16 217-232 164-179 (553)
93 PF08199 E2: Bacteriophage E2- 33.8 60 0.0013 20.3 2.7 20 743-762 17-36 (37)
94 PF08263 LRRNT_2: Leucine rich 32.9 32 0.00069 23.4 1.7 22 40-61 20-43 (43)
95 smart00367 LRR_CC Leucine-rich 27.0 46 0.001 19.6 1.5 11 96-106 2-12 (26)
96 TIGR00864 PCC polycystin catio 22.7 49 0.0011 43.9 2.0 32 576-607 1-32 (2740)
97 PF07204 Orthoreo_P10: Orthore 21.6 71 0.0015 25.9 2.0 29 711-739 41-69 (98)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-65 Score=616.70 Aligned_cols=560 Identities=33% Similarity=0.514 Sum_probs=499.0
Q ss_pred CCCcccccCCccccCCCCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhh-C
Q 045580 40 KGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-N 118 (764)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~ 118 (764)
.+....|.....||.|.|+.|.. ..+++.|||++|.+++.++..|..+++|++|+|++|++++.+|..+. +
T Consensus 45 ~~~~~~w~~~~~~c~w~gv~c~~--------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~ 116 (968)
T PLN00113 45 LKYLSNWNSSADVCLWQGITCNN--------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT 116 (968)
T ss_pred cccCCCCCCCCCCCcCcceecCC--------CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhcc
Confidence 34567887777899999998752 35899999999999999999999999999999999999988887654 9
Q ss_pred CCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCc-cccCCCCCCCCccEEEcCCCCC-CCccHhhhCCCCcc
Q 045580 119 IKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSL-HALPSFLLHQLDLR 196 (764)
Q Consensus 119 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l-~~lp~~l~~~~~L~ 196 (764)
+++|++|++++|++++.+|. ..+++|++|++++|.+... ...+ ..+.+|++|++++|.+ +.+|..+.++++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHH--hcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 99999999999999988874 5688999999999987432 2222 3456799999999998 57899999999999
Q ss_pred EEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCC-CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEccc
Q 045580 197 FIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE 275 (764)
Q Consensus 197 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 275 (764)
+|++++|++.+.+|..+. ++++|++|++++|.+.+.. .....+++|++|++++|.+.+.+|..+.. +++|++|++++
T Consensus 192 ~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~ 269 (968)
T PLN00113 192 FLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQ 269 (968)
T ss_pred eeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcC
Confidence 999999999988888764 8999999999999987642 22357889999999999999888888765 89999999999
Q ss_pred CCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcc
Q 045580 276 NGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI 353 (764)
Q Consensus 276 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~ 353 (764)
|.+.+..|..+.++++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+.+.+
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 99998899999999999999999999988888765 68899999999999988655 6778899999999999999899
Q ss_pred cccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCC
Q 045580 354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSS 432 (764)
Q Consensus 354 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~ 432 (764)
|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ .+++|+.|++++|.+++.+|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 9999999999999999999998899999999999999999999999888877 789999999999999999999999999
Q ss_pred CCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccC
Q 045580 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAA 512 (764)
Q Consensus 433 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~ 512 (764)
+|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.+
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~---------- 497 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS---------- 497 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh----------
Confidence 99999999999999999888899999999999999998888765 4588999999999999888876654
Q ss_pred CccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccC
Q 045580 513 GSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGS 592 (764)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 592 (764)
++.|+.|+|++|++.+.+|..+++
T Consensus 498 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 498 --------------------------------------------------------LSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred --------------------------------------------------------hhccCEEECcCCcceeeCChHHcC
Confidence 347899999999999999999999
Q ss_pred ccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCcccc
Q 045580 593 LSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNY 672 (764)
Q Consensus 593 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~ 672 (764)
+++|+.|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..+++.++...++
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~ 601 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV 601 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 045580 673 GGNSGLCGPR 682 (764)
Q Consensus 673 ~gn~~lc~~~ 682 (764)
.||+++||.+
T Consensus 602 ~~n~~lc~~~ 611 (968)
T PLN00113 602 AGNIDLCGGD 611 (968)
T ss_pred cCCccccCCc
Confidence 9999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-57 Score=546.87 Aligned_cols=515 Identities=34% Similarity=0.493 Sum_probs=469.3
Q ss_pred CCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccE
Q 045580 95 LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKA 174 (764)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 174 (764)
..+++.|+|++|.+++.++.+|..+++|++|+|++|++.|.+|...+.++++|++|++++|.+..... ....++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCE
Confidence 35799999999999999999999999999999999999999998777799999999999998753322 234567999
Q ss_pred EEcCCCCC-CCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCC-CCCCCCCCccEEEccCCC
Q 045580 175 LNLRNCSL-HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNK 252 (764)
Q Consensus 175 L~L~~n~l-~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~ 252 (764)
|++++|.+ +.+|..++.+++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+.. .....+++|+.|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 99999999 57899999999999999999999988988764 8999999999999987642 223578999999999999
Q ss_pred CCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee-
Q 045580 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV- 331 (764)
Q Consensus 253 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~- 331 (764)
+.+.+|..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..
T Consensus 224 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 224 LSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCC
Confidence 99999998865 9999999999999999999999999999999999999998888876 68999999999999998655
Q ss_pred -ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCC
Q 045580 332 -VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSS 409 (764)
Q Consensus 332 -~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~ 409 (764)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+ .+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999998887 7899
Q ss_pred ccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580 410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY 489 (764)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 489 (764)
|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.++..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred CcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccc
Q 045580 490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDIL 569 (764)
Q Consensus 490 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 569 (764)
|++.+.+|..+. .
T Consensus 462 n~~~~~~p~~~~-------------------------------------------------------------------~ 474 (968)
T PLN00113 462 NKFFGGLPDSFG-------------------------------------------------------------------S 474 (968)
T ss_pred ceeeeecCcccc-------------------------------------------------------------------c
Confidence 999887775432 2
Q ss_pred ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV 649 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 649 (764)
++|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+++|+.||+
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCC-CCCCCCCccccCCCCCCCCCC
Q 045580 650 SYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGPR 682 (764)
Q Consensus 650 s~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~~ 682 (764)
++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999976 456667778888888765443
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.7e-44 Score=349.95 Aligned_cols=500 Identities=26% Similarity=0.355 Sum_probs=355.3
Q ss_pred ccCCCCCcccccccCCCCCcccccCCccccCCCCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEEC
Q 045580 24 SPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDL 103 (764)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 103 (764)
+...++|.++|+.....+.- -.||..++ ++.|++++|.+. .+.+.+.++..|.+|++
T Consensus 19 r~l~~vp~~vyq~~~t~~e~--------e~wW~qv~--------------l~~lils~N~l~-~l~~dl~nL~~l~vl~~ 75 (565)
T KOG0472|consen 19 RSLKDVPTEVYQINLTTGEG--------ENWWEQVD--------------LQKLILSHNDLE-VLREDLKNLACLTVLNV 75 (565)
T ss_pred chhhhccHHHHHHHhhccch--------hhhhhhcc--------------hhhhhhccCchh-hccHhhhcccceeEEEe
Confidence 34567788888766333322 23455543 667889999888 44566888899999999
Q ss_pred CCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCC
Q 045580 104 SSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183 (764)
Q Consensus 104 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 183 (764)
++|++. ..|.+++.+..++.++.++|+++ .+| ..+..+.+|+.++++.|.+..-.+.+ ..+..|+.++..+|++.
T Consensus 76 ~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l~~s~n~~~el~~~i--~~~~~l~dl~~~~N~i~ 150 (565)
T KOG0472|consen 76 HDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKLDCSSNELKELPDSI--GRLLDLEDLDATNNQIS 150 (565)
T ss_pred ccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhhhccccceeecCchH--HHHhhhhhhhccccccc
Confidence 999888 56778888889999999999887 566 34666666666666655542222111 12223555566666666
Q ss_pred CccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhh
Q 045580 184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGK 263 (764)
Q Consensus 184 ~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 263 (764)
++|+.++++.+|..+++.+|++. ..|+... +++.|++ ||...|-+. .+|+.++.
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~-----------------------ld~~~N~L~-tlP~~lg~ 204 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKH-----------------------LDCNSNLLE-TLPPELGG 204 (565)
T ss_pred cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHh-----------------------cccchhhhh-cCChhhcc
Confidence 66666666666666666666665 3333332 2444444 444444444 78888875
Q ss_pred cCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee-ecCCCCCCceE
Q 045580 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWL 342 (764)
Q Consensus 264 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L 342 (764)
+.+|+.|++..|++. .+| .|..|..|++|+++.|.+. .+|.+....++++..||+..|++...+ .+.-+.+|+.|
T Consensus 205 -l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 205 -LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred -hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 888889999999887 566 7889999999999999988 888888778888888888888888766 55666778888
Q ss_pred EcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC---CCCEEE-------CcCCC---------CCCCCCC
Q 045580 343 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS---GLQFLD-------ISENQ---------LSGSVPS 403 (764)
Q Consensus 343 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~-------L~~n~---------l~~~~~~ 403 (764)
|+++|.++ ..|..++++ +|+.|.+.+|.+.. +-..+-+.. -|++|. ++.-. ..+..|.
T Consensus 281 DlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 281 DLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred cccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 88888887 456667887 88888888887652 222111111 011111 11100 1112222
Q ss_pred cccCCCccEEeccCCccccccchhhcCCC---CCCEEEccCCcCCCcchhhhhcCCCccE-EEccCCcCCccCCccccCC
Q 045580 404 SFNLSSLRRLYMHMNAFNGSIPGALRRSS---SLTVLDLRDNQFSGSIPIWINEFSYLGI-LLLRGNQLKGNIPNQLCHL 479 (764)
Q Consensus 404 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l 479 (764)
.....+.+.|++++-+++ .+|....... -.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+
T Consensus 358 ~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l 434 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQL 434 (565)
T ss_pred hhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhh
Confidence 235667889999998888 4454432222 3788999999998 78887777666654 445555554 888889999
Q ss_pred CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580 480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK 559 (764)
Q Consensus 480 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 559 (764)
++|..|++++|.+. .+|..++.
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~--------------------------------------------------------- 456 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGS--------------------------------------------------------- 456 (565)
T ss_pred hcceeeecccchhh-hcchhhhh---------------------------------------------------------
Confidence 99999999999875 56655543
Q ss_pred ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580 560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT 639 (764)
Q Consensus 560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~ 639 (764)
+..|+.||+|+|+|. .+|+.+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||+.++
T Consensus 457 ---------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lg 525 (565)
T KOG0472|consen 457 ---------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILG 525 (565)
T ss_pred ---------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhc
Confidence 236899999999998 89999999999999999999999767777999999999999999998 7899999
Q ss_pred CCCCCCeEeccCCcccc
Q 045580 640 ELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 640 ~l~~L~~L~ls~N~l~g 656 (764)
+|++|++|++++|++.-
T Consensus 526 nmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPFRQ 542 (565)
T ss_pred cccceeEEEecCCccCC
Confidence 99999999999999983
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-38 Score=320.97 Aligned_cols=387 Identities=26% Similarity=0.277 Sum_probs=302.7
Q ss_pred cEEECcCCcccccCchhhcCC--CCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEc
Q 045580 75 VELDLSKNNLYGHLSPCLSNL--THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL 152 (764)
Q Consensus 75 ~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l 152 (764)
+.||.+++.+..+....+..+ +.-+.||+++|.+....+..|.++++|+.+++.+|.++ .+|. ++..
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~-------- 123 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHE-------- 123 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--cccc--------
Confidence 457777777664433333333 23355888888888888888888888888888888876 5552 2211
Q ss_pred cCCCCCCccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCc
Q 045580 153 SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS 231 (764)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 231 (764)
..+|+.|+|.+|.|.++. +.+..++.|+.||||.|.|+ .+|...|..-.++++|+|++|.|+
T Consensus 124 ----------------sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 124 ----------------SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred ----------------ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccccc
Confidence 123666666666665553 45666677777777777776 566555545567777777777776
Q ss_pred cCCC-CCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhh
Q 045580 232 GNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQF 310 (764)
Q Consensus 232 ~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 310 (764)
..-. ....+.+|..|.|+.|+++ .+|...++.+++|+.|+|..|+|.-.--..|..+++|+.|.+..|.+. .+.+..
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~ 264 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGA 264 (873)
T ss_pred ccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcc
Confidence 5322 2246667888888888888 888888888999999999999987554667889999999999999998 778778
Q ss_pred hhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCC
Q 045580 311 LSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQ 388 (764)
Q Consensus 311 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 388 (764)
|.++.++++|+|+.|+++... ++.+++.|+.|++++|.|...-++.+..+++|+.|+|++|+++...+..|..+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 889999999999999988655 778899999999999999988888999999999999999999988888899999999
Q ss_pred EEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccc---hhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEcc
Q 045580 389 FLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP---GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR 464 (764)
Q Consensus 389 ~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 464 (764)
+|+|++|.+...-...| .+++|+.|||++|.++..+. ..|.++++|+.|++.+|++....-.+|.+++.|++|+|.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 99999999987666677 88999999999998876543 457889999999999999986656789999999999999
Q ss_pred CCcCCccCCccccCCCCCCEEeCCCCcC
Q 045580 465 GNQLKGNIPNQLCHLSLLNILDLSYNKF 492 (764)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 492 (764)
+|.|...-|..|..+ .|+.|.+..-+|
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred CCcceeecccccccc-hhhhhhhcccce
Confidence 999998888889888 888888765443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-37 Score=312.19 Aligned_cols=374 Identities=25% Similarity=0.242 Sum_probs=289.1
Q ss_pred CCCEEEccCCcCccCC-CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEEC
Q 045580 219 KLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL 297 (764)
Q Consensus 219 ~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 297 (764)
.-+.|++++|.+...- .....+++|+++.+..|.++ .+|..... ..+|+.|+|.+|.|+....+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3467888888887532 22347888888888888887 77775543 567888888888888777778888888888888
Q ss_pred CCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC
Q 045580 298 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 375 (764)
Q Consensus 298 s~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 375 (764)
|.|.++ .+|..-+..-.++++|+|++|.|+... .|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 888887 777665666677888888888888655 67777788888888888887777778888888888888888864
Q ss_pred CccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhc
Q 045580 376 QIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINE 454 (764)
Q Consensus 376 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 454 (764)
.---.|.++++|+.|.+..|.+.......| .+.++++|+|..|+++..-.+++.++++|+.|++++|.|...-++.+.-
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 435567888888888888888887776666 7888888888888887776777778888888888888888777777778
Q ss_pred CCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhh
Q 045580 455 FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNS 534 (764)
Q Consensus 455 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (764)
+++|++|+|++|+++...++.|..+..|++|+|++|+++..--..|
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---------------------------------- 361 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---------------------------------- 361 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH----------------------------------
Confidence 8888888888888887677778778888888888887752111111
Q ss_pred hhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCC---ccccCccccceecccccccccccC
Q 045580 535 TLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIP---SEIGSLSEIRALNLSHNFLSGSIP 611 (764)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~L~Ls~N~l~~~~p 611 (764)
.-+++|++|||++|.++..|- ..|..+++|+.|+|.+|++....-
T Consensus 362 --------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 362 --------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred --------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 114578888999998887654 356778888999999998885444
Q ss_pred ccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCC
Q 045580 612 QSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAG 662 (764)
Q Consensus 612 ~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~ 662 (764)
..|.++.+||.|||.+|.|...-|..|..+ .|+.|-+..-.+-|.|.-.|
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 778888999999999999888888888888 78888887777777776543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.9e-39 Score=314.86 Aligned_cols=491 Identities=26% Similarity=0.329 Sum_probs=276.2
Q ss_pred hhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCc
Q 045580 116 IANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDL 195 (764)
Q Consensus 116 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L 195 (764)
...-.-|+.+++++|.+.... ..+.++..|.++++..|.....+.+.. .+..++.++.+.|++..+|+.+....+|
T Consensus 41 wW~qv~l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~n~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSHNKLSELPEQIGSLISL 116 (565)
T ss_pred hhhhcchhhhhhccCchhhcc--HhhhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhcccchHhhccHHHhhhhhh
Confidence 444566778888888876322 246666666666666555432222111 1223555666666666666666666666
Q ss_pred cEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEccc
Q 045580 196 RFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE 275 (764)
Q Consensus 196 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 275 (764)
+.++.++|.+. .+|+.++ .+..++.++..+|++...++....+.++..+++.+|++. .+|+.... ++.|++||...
T Consensus 117 ~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhhcccccee-ecCchHH-HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccch
Confidence 66666666665 4555444 455566666666666554444445555555666666655 44444333 55566666655
Q ss_pred CCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcc
Q 045580 276 NGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI 353 (764)
Q Consensus 276 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~ 353 (764)
|.++ .+|..++.+.+|..|++..|++. .+|+ |.+|..|++++++.|++.-.. ...+++++..||+..|+++ ..
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence 5554 45555666666666666666655 5552 355555666666555555433 3345555555555555555 44
Q ss_pred cccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCC---ccEEec--cCCccccccchhh
Q 045580 354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS---LRRLYM--HMNAFNGSIPGAL 428 (764)
Q Consensus 354 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---L~~L~l--~~n~l~~~~~~~~ 428 (764)
|+.++.+.+|++||+++|.++ .+|..++++ .|+.|.+.+|.+...-.+..+... |++|.= ..-.++..-..
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~-- 343 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG-- 343 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc--
Confidence 555555555555555555555 344455555 555555555554322111111000 111100 00000000000
Q ss_pred cCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCC---CCEEeCCCCcCcCCcChhhhcchh
Q 045580 429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSL---LNILDLSYNKFNGPIPVCFANVTL 505 (764)
Q Consensus 429 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~p~~~~~l~~ 505 (764)
+-..-+ ...+..| ....+.+.+.|++++-+++ .+|........ ....+++.|++. ++|..+..+..
T Consensus 344 ----~e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 344 ----TETAMT----LPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred ----ccccCC----CCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 000000 0000011 1122334555555555555 34433322222 455556666554 34443333221
Q ss_pred hcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccccc
Q 045580 506 WTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD 585 (764)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 585 (764)
+...-... . + +..+....-..+++++.|+|++|-+. .
T Consensus 413 lvT~l~ls---------------------n----------n-----------~isfv~~~l~~l~kLt~L~L~NN~Ln-~ 449 (565)
T KOG0472|consen 413 LVTDLVLS---------------------N----------N-----------KISFVPLELSQLQKLTFLDLSNNLLN-D 449 (565)
T ss_pred HHHHHHhh---------------------c----------C-----------ccccchHHHHhhhcceeeecccchhh-h
Confidence 10000000 0 0 00000000023568999999999998 7
Q ss_pred CCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCC
Q 045580 586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFA 665 (764)
Q Consensus 586 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~ 665 (764)
+|.+++.+..|+.||+|+|++. .+|..+..+..+|.+-.++|++....|+.+.+|.+|..||+.+|.+....|..+.+.
T Consensus 450 LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmt 528 (565)
T KOG0472|consen 450 LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMT 528 (565)
T ss_pred cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccc
Confidence 9999999999999999999998 899999999999999999999997777779999999999999999998777778999
Q ss_pred CCCccccCCCCCC
Q 045580 666 NFDEQNYGGNSGL 678 (764)
Q Consensus 666 ~~~~~~~~gn~~l 678 (764)
++....+.|||.-
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 9999999999964
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-37 Score=330.72 Aligned_cols=470 Identities=28% Similarity=0.357 Sum_probs=353.0
Q ss_pred ccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCC
Q 045580 66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHS 145 (764)
Q Consensus 66 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 145 (764)
..+..-..++.|+++.|.+-...-+...+.-+|+.|||++|++. ..|..+..+.+|+.|+++.|.+. ..| .
T Consensus 15 ~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-~------ 85 (1081)
T KOG0618|consen 15 EQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-S------ 85 (1081)
T ss_pred hhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-h------
Confidence 33333444666666666555433344445555666666666665 35555666666666666666554 333 1
Q ss_pred CCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEc
Q 045580 146 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYL 225 (764)
Q Consensus 146 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 225 (764)
......+|+++.|.+|.+..+|..+..+.+|+.|+++.|++. .+|..+. .++.++.+..
T Consensus 86 -------------------s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~ 144 (1081)
T KOG0618|consen 86 -------------------SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAA 144 (1081)
T ss_pred -------------------hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhh
Confidence 223334577777888888888999999999999999999987 7887765 7788888888
Q ss_pred cCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccccc
Q 045580 226 LNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305 (764)
Q Consensus 226 ~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 305 (764)
++|..... + ....++.+++..|.+.+.++.++.. +.. .|+|++|.+. . ..+..+++|+.|....|+++ .
T Consensus 145 s~N~~~~~--l--g~~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls-~ 213 (1081)
T KOG0618|consen 145 SNNEKIQR--L--GQTSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLS-E 213 (1081)
T ss_pred hcchhhhh--h--ccccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh-h--hhhhhccchhhhhhhhcccc-e
Confidence 88822111 1 1222788889888888888877654 444 6999999887 2 24677889999999999887 4
Q ss_pred CchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC
Q 045580 306 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS 385 (764)
Q Consensus 306 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 385 (764)
+. -.-++|+.|+.++|.+.....-....+|++++++.|++++ +|++++.+.+|+.++..+|.++ .+|..+....
T Consensus 214 l~----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~ 287 (1081)
T KOG0618|consen 214 LE----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRIT 287 (1081)
T ss_pred EE----ecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhh
Confidence 33 2457899999999999855555556789999999999995 4599999999999999999996 7888888899
Q ss_pred CCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCC-CCCEEEccCCcCCCcch-hhhhcCCCccEEEc
Q 045580 386 GLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS-SLTVLDLRDNQFSGSIP-IWINEFSYLGILLL 463 (764)
Q Consensus 386 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L 463 (764)
+|+.|.+..|.+....|..-..++|+.|++..|++....+..+.... +|..|+.+.|++.. .| ..=...+.|+.|++
T Consensus 288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYL 366 (1081)
T ss_pred hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHH
Confidence 99999999999986655555799999999999999744443333333 37778888888773 33 11234578999999
Q ss_pred cCCcCCccCCccccCCCCCCEEeCCCCcCcCCcCh-hhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccc
Q 045580 464 RGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPV-CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVK 542 (764)
Q Consensus 464 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 542 (764)
.+|.+++..-+.+.+.+.|++|+|++|++. .+|. ++.+
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k---------------------------------------- 405 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK---------------------------------------- 405 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccc-cCCHHHHhc----------------------------------------
Confidence 999999888888889999999999999986 3443 2222
Q ss_pred cccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCE
Q 045580 543 HFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIES 622 (764)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 622 (764)
+..|+.|+||+|+++ .+|..+.+++.|++|...+|++. ..| ++..+++|+.
T Consensus 406 --------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 406 --------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred --------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 347889999999999 79999999999999999999998 677 8999999999
Q ss_pred EECcCCcCccc-CcccccCCCCCCeEeccCCcc
Q 045580 623 LDLSHNDLSGQ-IPPQLTELNFLSNFNVSYNHL 654 (764)
Q Consensus 623 LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~l 654 (764)
+|+|.|+|+.. +|.... -++|++||+++|..
T Consensus 457 lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred EecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 99999999844 343332 37899999999973
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-34 Score=311.88 Aligned_cols=419 Identities=26% Similarity=0.320 Sum_probs=330.7
Q ss_pred CCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEc
Q 045580 169 EYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI 248 (764)
Q Consensus 169 ~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 248 (764)
..+|+.|+++.|.+..+|....++.+|+++.|.+|++. ..|..+. .+.+|+.|+++.|.+...+.....+..++.+..
T Consensus 67 l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 67 LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAA 144 (1081)
T ss_pred HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccCCCchhHHhhhHHHHHhh
Confidence 34688889999999999999999999999999999988 8888764 899999999999999877666667888888899
Q ss_pred cCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccc
Q 045580 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328 (764)
Q Consensus 249 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 328 (764)
++|.-...++. ..++.+++..|.+.+.++..+..++. .|+|.+|.+. ... ...+.+|+.|....|++.
T Consensus 145 s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 145 SNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLS 212 (1081)
T ss_pred hcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccc
Confidence 99832212222 23788899999888888888888777 7999999886 333 367888999999998887
Q ss_pred ceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCC
Q 045580 329 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLS 408 (764)
Q Consensus 329 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 408 (764)
.... .-++|+.|+.+.|.++...+. ..-.+|+++++++|+++ .+|++++.+.+|+.++..+|+++......+...
T Consensus 213 ~l~~--~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~ 287 (1081)
T KOG0618|consen 213 ELEI--SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRIT 287 (1081)
T ss_pred eEEe--cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhh
Confidence 5442 236889999999998833322 23468999999999998 567999999999999999999964444445888
Q ss_pred CccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhh-hcCC-CccEEEccCCcCCccCC-ccccCCCCCCEE
Q 045580 409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFS-YLGILLLRGNQLKGNIP-NQLCHLSLLNIL 485 (764)
Q Consensus 409 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 485 (764)
+|+.|.+..|.+. .+|......+.|++|+|..|++. .+|+.+ .... .|+.|+.+.|++.. .| ..=...+.|+.|
T Consensus 288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQEL 364 (1081)
T ss_pred hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHH
Confidence 9999999999987 55656777899999999999998 455433 3333 37778888888773 33 122235678888
Q ss_pred eCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580 486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565 (764)
Q Consensus 486 ~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 565 (764)
.+.+|.++...-..+.
T Consensus 365 ylanN~Ltd~c~p~l~---------------------------------------------------------------- 380 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLV---------------------------------------------------------------- 380 (1081)
T ss_pred HHhcCcccccchhhhc----------------------------------------------------------------
Confidence 8888888753222111
Q ss_pred ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCC
Q 045580 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645 (764)
Q Consensus 566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 645 (764)
...+|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+.++..|++|...+|++. ..| .+..++.|+
T Consensus 381 --~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 381 --NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred --cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 1458999999999998555567899999999999999999 89999999999999999999999 667 889999999
Q ss_pred eEeccCCcccc-CCCCCCCCCCCCccccCCCCCC
Q 045580 646 NFNVSYNHLSG-PTPNAGQFANFDEQNYGGNSGL 678 (764)
Q Consensus 646 ~L~ls~N~l~g-~~p~~~~~~~~~~~~~~gn~~l 678 (764)
.+|+|.|+|+- .+|..-...+++...+.||..+
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 99999999975 4555544477788889999863
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.1e-33 Score=286.03 Aligned_cols=365 Identities=25% Similarity=0.376 Sum_probs=218.8
Q ss_pred ccEEEcCCCCC--CCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEcc
Q 045580 172 LKALNLRNCSL--HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS 249 (764)
Q Consensus 172 L~~L~L~~n~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls 249 (764)
.+-.++++|.+ ..+|.....+++++-|.|...++. .+|+.+. .+.+|++|.+++|++.........++.|+.+++.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 45567777777 457888888888888888888876 7787765 7888888888888887665556677777777777
Q ss_pred CCCCC-CCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccc
Q 045580 250 HNKFS-GQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328 (764)
Q Consensus 250 ~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 328 (764)
.|++. .-+|..++. +..|+.|||++|+++ ..|..+..-+++-.|+||+|++. .||..++.+++.|-.|+|++|++.
T Consensus 87 ~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 77663 247777776 788888888888887 67777877888888888888887 788777666666666666666554
Q ss_pred ceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCC-CCCCCcc-c
Q 045580 329 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS-GSVPSSF-N 406 (764)
Q Consensus 329 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~ 406 (764)
. +|+.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|..+ .
T Consensus 164 ~-----------------------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 164 M-----------------------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred h-----------------------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 3 3334444555555555555443221222233344444444443322 1233333 4
Q ss_pred CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486 (764)
Q Consensus 407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 486 (764)
+.+|..+|++.|.+. ..|..+.++++|+.|+|++|+|+ .+....+...+|++|+++.|+++ .+|..++++++|+.|.
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 444444444444443 44455555555555555555554 33333344445555555555555 4555555555555555
Q ss_pred CCCCcCc-CCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580 487 LSYNKFN-GPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565 (764)
Q Consensus 487 Ls~n~l~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 565 (764)
+.+|+++ .-+|..+++
T Consensus 298 ~n~NkL~FeGiPSGIGK--------------------------------------------------------------- 314 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGK--------------------------------------------------------------- 314 (1255)
T ss_pred hccCcccccCCccchhh---------------------------------------------------------------
Confidence 5555543 122332222
Q ss_pred ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCc
Q 045580 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP 635 (764)
Q Consensus 566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 635 (764)
+..|+.+..++|.+. ..|+.++.+..|+.|.|++|++. .+|+.+.-|+.|+.||+..|.-....|
T Consensus 315 ---L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 315 ---LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ---hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 123444445555554 56666666666666666666665 566666666666666666665543333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.2e-33 Score=286.69 Aligned_cols=363 Identities=25% Similarity=0.324 Sum_probs=205.6
Q ss_pred CCCCCcEEECcCCccc-ccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCc
Q 045580 70 ELKKLVELDLSKNNLY-GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQ 148 (764)
Q Consensus 70 ~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 148 (764)
-++-.+-.|+++|.++ +..|.....+++++-|.|...++. .+|+.++.+.+|++|.+++|++... . ..++.++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-h-GELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-H-GELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-h-hhhccchhhH
Confidence 3567788899999998 568888999999999999988887 6888899999999999999987622 1 2455555555
Q ss_pred EEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCC
Q 045580 149 VFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228 (764)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 228 (764)
.+++..|.+.. ..+|..++.+..|+.||||+|+++ ..|..+- .-+++-+|+|++|
T Consensus 82 sv~~R~N~LKn-----------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 82 SVIVRDNNLKN-----------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYN 136 (1255)
T ss_pred HHhhhcccccc-----------------------CCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccC
Confidence 55555444321 334555555555555555555554 4444432 3344444444444
Q ss_pred cCccCCCC-CCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccc-ccC
Q 045580 229 SLSGNFQL-PSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS-GEL 306 (764)
Q Consensus 229 ~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~ 306 (764)
+|...+.. ..++..|-.||+|+|++. .+|+.+-. +..|++|+|++|.+.-..-..+..+++|++|.+++.+-+ ..+
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence 44422111 013333334444444443 56665543 666777777777655333334445566666666665432 235
Q ss_pred chhhhhCCCCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC
Q 045580 307 PRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS 385 (764)
Q Consensus 307 p~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 385 (764)
|.++ .++.+|+.++++.|.+...+ .+.++++|+.|+|++|+++. +......-.+|++|+++.|+++ .+|+.++.++
T Consensus 215 Ptsl-d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~ 291 (1255)
T KOG0444|consen 215 PTSL-DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT 291 (1255)
T ss_pred CCch-hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence 5443 45556666666666655444 44455555555555555552 2222333345555555555555 4555555555
Q ss_pred CCCEEECcCCCCCCC-CCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEc
Q 045580 386 GLQFLDISENQLSGS-VPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLL 463 (764)
Q Consensus 386 ~L~~L~L~~n~l~~~-~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 463 (764)
+|+.|.+.+|+++-. +|..+ .+..|+.+..++|.+. ..|..++.|..|+.|.|+.|++. .+|+.+.-++.|++|++
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence 555555555554321 23323 4555555555555554 45555555555555555555554 45555555555555555
Q ss_pred cCCc
Q 045580 464 RGNQ 467 (764)
Q Consensus 464 ~~n~ 467 (764)
+.|.
T Consensus 370 reNp 373 (1255)
T KOG0444|consen 370 RENP 373 (1255)
T ss_pred cCCc
Confidence 5554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.4e-22 Score=245.36 Aligned_cols=292 Identities=24% Similarity=0.244 Sum_probs=165.1
Q ss_pred CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCc-cCCCCCCCCCCccEEEcc
Q 045580 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS-GNFQLPSSKHDLLRIDIS 249 (764)
Q Consensus 171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~L~~L~ls 249 (764)
+|++|++.+|++..++..+..+++|+.|+|+++...+.+|. +..+++|++|+|++|... ..+.....+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 45566666666655555555566666666665543334443 234555555555554321 111111234444444444
Q ss_pred CCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329 (764)
Q Consensus 250 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 329 (764)
+|...+.+|..+ .+++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+ .+++|+.|.+.++....
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhh
Confidence 443323444433 2445555555554433333321 234445555555443 444322 23444444443321110
Q ss_pred eeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCC
Q 045580 330 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409 (764)
Q Consensus 330 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 409 (764)
.. +.+....+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|....+++
T Consensus 762 l~---------------~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s 826 (1153)
T PLN03210 762 LW---------------ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES 826 (1153)
T ss_pred cc---------------ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence 00 001111111223346788888888877667788888888888888888765556666667788
Q ss_pred ccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580 410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY 489 (764)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 489 (764)
|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++
T Consensus 827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 888888887655455532 357888888888887 6788888888888888888544335777777888888888888
Q ss_pred Cc
Q 045580 490 NK 491 (764)
Q Consensus 490 n~ 491 (764)
|.
T Consensus 903 C~ 904 (1153)
T PLN03210 903 CG 904 (1153)
T ss_pred Cc
Confidence 74
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.7e-22 Score=242.96 Aligned_cols=335 Identities=20% Similarity=0.219 Sum_probs=208.2
Q ss_pred CCCCccEEEccCCC------CCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhh
Q 045580 239 SKHDLLRIDISHNK------FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 312 (764)
Q Consensus 239 ~~~~L~~L~ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 312 (764)
.+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|.+. .++..+ .
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~ 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-H 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-c
Confidence 45666666665442 222345544432335666666666654 455555 3566667777666665 555443 4
Q ss_pred CCCCCCEEEeeccc-ccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEE
Q 045580 313 GCFSLSFLSLSDNH-LQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391 (764)
Q Consensus 313 ~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 391 (764)
.+++|+.|+++++. +.....+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|+.|+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 56666666666543 3333355556666666666665555666666666666666666654444555544 566666666
Q ss_pred CcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCC-------CcchhhhhcCCCccEEEcc
Q 045580 392 ISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS-------GSIPIWINEFSYLGILLLR 464 (764)
Q Consensus 392 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l~~L~~L~L~ 464 (764)
+++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|++.++... ...+......++|+.|+++
T Consensus 711 Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 711 LSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 6666544444432 345666666666654 344333 3556666666553211 1111122234567777777
Q ss_pred CCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccc
Q 045580 465 GNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHF 544 (764)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 544 (764)
+|...+.+|..+.++++|+.|++++|...+.+|...
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------------- 822 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------------- 822 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--------------------------------------------
Confidence 776666667777777777777777665433333221
Q ss_pred cccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEE
Q 045580 545 YKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLD 624 (764)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld 624 (764)
.+++|+.|+|++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+
T Consensus 823 -----------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 823 -----------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred -----------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 1457889999987655566653 357889999999998 7899999999999999
Q ss_pred CcCCcCcccCcccccCCCCCCeEeccCCc
Q 045580 625 LSHNDLSGQIPPQLTELNFLSNFNVSYNH 653 (764)
Q Consensus 625 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 653 (764)
|++|+--..+|..+..++.|+.+++++|.
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99854444688888899999999999884
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=6.9e-25 Score=215.71 Aligned_cols=257 Identities=25% Similarity=0.299 Sum_probs=187.7
Q ss_pred CCCCC-CCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCC-CcccccCchhhhhC
Q 045580 236 LPSSK-HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSS-NNFSGELPRQFLSG 313 (764)
Q Consensus 236 ~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~ 313 (764)
+|..+ +.-..++|..|+|+ .+|+..++.+++|+.|||++|+|+.+.|++|..+++|.+|-+.+ |+|+ .+|...|.+
T Consensus 61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g 138 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG 138 (498)
T ss_pred CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence 44433 35567777777777 78888888888888888888888888888888888887776666 7777 888888888
Q ss_pred CCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccC------------CCccc
Q 045580 314 CFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY------------GQIPH 379 (764)
Q Consensus 314 l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~ 379 (764)
+..++.|.+.-|++.... .+..++++..|.+..|.+....-..|..+..++.+.+..|.+. ...|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 888888888887776544 6777888888888888877544447777788888887777621 11222
Q ss_pred cccCCCCCCEEE-------------------------CcCCCCCCCCCCc-c-cCCCccEEeccCCccccccchhhcCCC
Q 045580 380 WFGNLSGLQFLD-------------------------ISENQLSGSVPSS-F-NLSSLRRLYMHMNAFNGSIPGALRRSS 432 (764)
Q Consensus 380 ~~~~l~~L~~L~-------------------------L~~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~~~~~~~~~ 432 (764)
.+++..-..-.. .+.+...+..|.. | .+++|+.|++++|+++++-+.+|.+..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 222221111111 1222233333332 3 688899999999999888888899999
Q ss_pred CCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494 (764)
Q Consensus 433 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 494 (764)
.+++|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-.|.+..
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 99999999998876656677888899999999999988888888888889999988887753
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.6e-21 Score=218.75 Aligned_cols=264 Identities=28% Similarity=0.367 Sum_probs=143.9
Q ss_pred cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEee
Q 045580 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323 (764)
Q Consensus 244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~ 323 (764)
..|+++++.++ .+|..+. ++|+.|++.+|+++. +|.. +++|++|++++|+++ .+|. ..
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp--------- 261 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPV----LP--------- 261 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccC----cc---------
Confidence 44555555555 4555442 345555555555552 3321 345555555555554 3442 12
Q ss_pred cccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCC
Q 045580 324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS 403 (764)
Q Consensus 324 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 403 (764)
++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++++. |.
T Consensus 262 -------------~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~ 319 (788)
T PRK15387 262 -------------PGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PA 319 (788)
T ss_pred -------------cccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CC
Confidence 344444555544442 2221 134555666666655 23331 34566666666666542 22
Q ss_pred cccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCC
Q 045580 404 SFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN 483 (764)
Q Consensus 404 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 483 (764)
. ..+|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+
T Consensus 320 l--p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~ 385 (788)
T PRK15387 320 L--PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLK 385 (788)
T ss_pred C--cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccc
Confidence 1 2345566666666653 3321 235677777777776 34432 245666677777766 34542 24567
Q ss_pred EEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccc
Q 045580 484 ILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYES 563 (764)
Q Consensus 484 ~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 563 (764)
.|++++|++++ +|..
T Consensus 386 ~LdLs~N~Lt~-LP~l---------------------------------------------------------------- 400 (788)
T PRK15387 386 ELIVSGNRLTS-LPVL---------------------------------------------------------------- 400 (788)
T ss_pred eEEecCCcccC-CCCc----------------------------------------------------------------
Confidence 77777777653 2211
Q ss_pred ccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccC
Q 045580 564 YKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE 640 (764)
Q Consensus 564 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 640 (764)
.+.|+.|++++|++++ +|... .+|+.|++++|+|+ .+|..++++++|+.|+|++|++++.+|..+..
T Consensus 401 -----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 -----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 1246667777777763 55432 35666777777776 56777777777777777777777776666543
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-23 Score=207.04 Aligned_cols=398 Identities=21% Similarity=0.241 Sum_probs=226.3
Q ss_pred CCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcC-CCCCCCCChhhhccCCCCcEEE
Q 045580 73 KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD-NNFEGSFSFNSLKNHSKLQVFK 151 (764)
Q Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~l~~l~~L~~L~ 151 (764)
.-+.++|..|.|+.+.+.+|+.+++||.||||+|+|+.+.|++|.++++|..|-+.+ |+|+ .+|...|+++..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 557899999999999999999999999999999999999999999999988777666 8887 88888999999988888
Q ss_pred ccCCCCC-CccccCCCCCCCCccEEEcCCCCCCCccH-hhhCCCCccEEEccCCCCCCc-cchH----------HhhcCC
Q 045580 152 LSNSLVK-IETEEFPGLPEYQLKALNLRNCSLHALPS-FLLHQLDLRFIDLSHNKLQGT-FPSW----------LLQNNT 218 (764)
Q Consensus 152 l~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~-~~~~----------~~~~l~ 218 (764)
+.-|.+. +..+++..++ +|..|.+.+|.+..++. .+..+..++.+.+..|.+... --+| .++...
T Consensus 147 lNan~i~Cir~~al~dL~--~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLP--SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred cChhhhcchhHHHHHHhh--hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 7766542 2222222222 25555555555555543 444555555555555542100 0000 000111
Q ss_pred CCCEEEccCCcCccCCCCCCCCCCccEE---EccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEE
Q 045580 219 KLDTLYLLNNSLSGNFQLPSSKHDLLRI---DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESL 295 (764)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L---~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 295 (764)
...-..+.+.++....+ ......++.+ -.+.+...+..|...++.+++|++|+|++|+++.+-+.+|.....+++|
T Consensus 225 c~~p~rl~~~Ri~q~~a-~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDA-RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred ecchHHHHHHHhcccch-hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 11111111111110000 0001111111 2233334446666666777888888888888877777778888888888
Q ss_pred ECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcc-cccccCCCCCCEEeCcCCc
Q 045580 296 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI-QDGLSKATSLLELDLSNNM 372 (764)
Q Consensus 296 ~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~ 372 (764)
.|..|++. .+...+|.++..|+.|+|.+|+|+... .|....+|.+|.+-.|.+.-.- -.+++. .+....
T Consensus 304 ~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~ 375 (498)
T KOG4237|consen 304 YLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKS 375 (498)
T ss_pred hcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCC
Confidence 88888776 666667777777777777777777543 5666667777777666543100 000000 000000
Q ss_pred cCCCccccccCCCCCCEEECcCCCCCC---CCCCcc----------cCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580 373 LYGQIPHWFGNLSGLQFLDISENQLSG---SVPSSF----------NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL 439 (764)
Q Consensus 373 l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~----------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 439 (764)
..| .|. -..-..++.+.++...+.. ..|+.. .++.+.+..=..|+....+|..+ ....+++++
T Consensus 376 ~~~-~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl 451 (498)
T KOG4237|consen 376 VVG-NPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYL 451 (498)
T ss_pred CCC-CCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhc
Confidence 000 000 0011123333333322211 011100 22333322222233223444332 235567888
Q ss_pred cCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCC
Q 045580 440 RDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN 490 (764)
Q Consensus 440 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 490 (764)
.+|.++ .+|.. .+.+| .+++++|++....-..|.++.+|.+|-|++|
T Consensus 452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 888887 55654 45666 7888888887555567777888888777765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=8.2e-21 Score=213.13 Aligned_cols=263 Identities=25% Similarity=0.306 Sum_probs=132.3
Q ss_pred ccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCC
Q 045580 172 LKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHN 251 (764)
Q Consensus 172 L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n 251 (764)
-..|+++++.++++|..+. .+|+.|++++|+++ .+|. ..++|++|++++|.++..+ ...++|+.|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP---~lp~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP---VLPPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc---CcccccceeeccCC
Confidence 4566777777777776554 25777777777766 4554 2466677777777666432 23356666666666
Q ss_pred CCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee
Q 045580 252 KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 331 (764)
Q Consensus 252 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 331 (764)
.+. .+|.. +++|+.|++++|+++ .+|.. .++|+.|++++|++. .+|.. ..+|+.|++++|.+++..
T Consensus 273 ~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 273 PLT-HLPAL----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred chh-hhhhc----hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccccc
Confidence 665 44431 345666666666665 23432 345666666666665 34431 234555555555554322
Q ss_pred ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCcc
Q 045580 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLR 411 (764)
Q Consensus 332 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~ 411 (764)
.+ ..+|+.|++++|++++ +|.. ..+|+.|++++|.+.+ +|.. ..+|+
T Consensus 339 ~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l--------------------------~~~L~ 385 (788)
T PRK15387 339 TL--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--------------------------PSGLK 385 (788)
T ss_pred cc--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--------------------------ccccc
Confidence 11 1244555555555442 2221 1234444444444442 3321 12344
Q ss_pred EEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCc
Q 045580 412 RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491 (764)
Q Consensus 412 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 491 (764)
.|++++|.+++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 386 ~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 386 ELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred eEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 44444444442 2211 234555555555554 233221 23445555555555 445555555555555555555
Q ss_pred CcCCcChhh
Q 045580 492 FNGPIPVCF 500 (764)
Q Consensus 492 l~~~~p~~~ 500 (764)
+++..|..+
T Consensus 457 Ls~~~~~~L 465 (788)
T PRK15387 457 LSERTLQAL 465 (788)
T ss_pred CCchHHHHH
Confidence 555544444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.6e-19 Score=200.62 Aligned_cols=223 Identities=25% Similarity=0.391 Sum_probs=96.3
Q ss_pred CCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECC
Q 045580 219 KLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS 298 (764)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 298 (764)
+...|+++++.++..+.. -.+.|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~--Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC--IPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcc--cccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 345566665555543211 1234555555555555 4444432 34555555555544 2333322 245555555
Q ss_pred CCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcc
Q 045580 299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP 378 (764)
Q Consensus 299 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 378 (764)
+|.+. .+|..+. . +|+.|++++|.++ .+|..+. ++|+.|++++|++++ +|
T Consensus 250 ~N~L~-~LP~~l~---s----------------------~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP 299 (754)
T PRK15370 250 INRIT-ELPERLP---S----------------------ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LP 299 (754)
T ss_pred CCccC-cCChhHh---C----------------------CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Cc
Confidence 55544 4443321 2 3344444444443 2232221 245555555555442 23
Q ss_pred ccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCc
Q 045580 379 HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458 (764)
Q Consensus 379 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 458 (764)
..+. ++|+.|++++|.++. +|... .++|+.|++++|.+++ +|..+ +++|+.|++++|+++ .+|..+. ++|
T Consensus 300 ~~lp--~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L 369 (754)
T PRK15370 300 AHLP--SGITHLNVQSNSLTA-LPETL-PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTI 369 (754)
T ss_pred ccch--hhHHHHHhcCCcccc-CCccc-cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCc
Confidence 2221 234445555555442 22111 1344445555554442 33322 135555555555554 3343331 345
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEeCCCCcCc
Q 045580 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493 (764)
Q Consensus 459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 493 (764)
++|++++|+++ .+|..+. ..|+.|++++|+++
T Consensus 370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 55555555554 2333332 23555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=8.2e-19 Score=198.59 Aligned_cols=246 Identities=22% Similarity=0.346 Sum_probs=170.9
Q ss_pred CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccC
Q 045580 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH 250 (764)
Q Consensus 171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~ 250 (764)
+...|++++++++.+|..+. ++|+.|++++|+++ .+|..++ ++|++|++++|.+++.+. ....+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~--~l~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPA--TLPDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCCh--hhhccccEEECcC
Confidence 46788888888888887653 47888999999888 6777654 578888888888875432 1234788888888
Q ss_pred CCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce
Q 045580 251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330 (764)
Q Consensus 251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 330 (764)
|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.++..
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTAL 319 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccccC
Confidence 8887 7887663 57888899888887 4676554 47888999888887 566543 24677788888877754
Q ss_pred eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCc
Q 045580 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL 410 (764)
Q Consensus 331 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L 410 (764)
.. ...++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+ ...|
T Consensus 320 P~-~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l-~~sL 390 (754)
T PRK15370 320 PE-TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENL-PAAL 390 (754)
T ss_pred Cc-cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhH-HHHH
Confidence 31 112577788888887774 444442 57888888888776 4555442 577788888887774 33333 1357
Q ss_pred cEEeccCCccccccchh----hcCCCCCCEEEccCCcCC
Q 045580 411 RRLYMHMNAFNGSIPGA----LRRSSSLTVLDLRDNQFS 445 (764)
Q Consensus 411 ~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~ 445 (764)
+.|++++|++. .+|.. +..++.+..|++.+|.++
T Consensus 391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77777777776 33433 334466777777777766
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2e-19 Score=189.93 Aligned_cols=279 Identities=24% Similarity=0.268 Sum_probs=137.6
Q ss_pred EEECCCCcccccCchhhhhCCCCCCEEEeeccccccee------ecCCCCCCceEEcccccCCC------cccccccCCC
Q 045580 294 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHFSG------KIQDGLSKAT 361 (764)
Q Consensus 294 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~L~~n~l~~------~~~~~l~~l~ 361 (764)
.|+|..+.+++.--..++..+..|+.++++++.++... .+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 45666666663333344455666777777777664321 23344455566665555441 1122233344
Q ss_pred CCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccc----ccchhhcCC-CCCCE
Q 045580 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNG----SIPGALRRS-SSLTV 436 (764)
Q Consensus 362 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~-~~L~~ 436 (764)
+|+.|++++|.+.+..+..+..+.+ . ++|+.|++++|.+.+ .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 4444444444443323322222222 0 124555555444432 122233344 56666
Q ss_pred EEccCCcCCCc----chhhhhcCCCccEEEccCCcCCcc----CCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcc
Q 045580 437 LDLRDNQFSGS----IPIWINEFSYLGILLLRGNQLKGN----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508 (764)
Q Consensus 437 L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~ 508 (764)
|++++|.+++. ++..+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++.....+....
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~---- 217 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL---- 217 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh----
Confidence 66666666532 223344455666666666666532 222333445666666666665432211111100
Q ss_pred cccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCc
Q 045580 509 GQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPS 588 (764)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~ 588 (764)
..++.|+.|++++|.+++....
T Consensus 218 ----------------------------------------------------------~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 218 ----------------------------------------------------------ASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred ----------------------------------------------------------cccCCCCEEecCCCcCchHHHH
Confidence 1133566666666666542222
Q ss_pred ccc-----Cccccceeccccccccc----ccCccccCCCCCCEEECcCCcCccc----CcccccCC-CCCCeEeccCCcc
Q 045580 589 EIG-----SLSEIRALNLSHNFLSG----SIPQSLSNLKMIESLDLSHNDLSGQ----IPPQLTEL-NFLSNFNVSYNHL 654 (764)
Q Consensus 589 ~l~-----~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l 654 (764)
.+. ..+.|+.|++++|.++. .++..+..+++|+.+|+++|.++.. ....+... +.|+.+++.+|++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 221 13566777777776651 2344455556777777777777743 33444444 5667777776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.1e-18 Score=184.15 Aligned_cols=280 Identities=24% Similarity=0.281 Sum_probs=178.5
Q ss_pred EEEcccCCCC-ccCCccccCCCCCCEEECCCCccccc----CchhhhhCCCCCCEEEeecccccc--ee------ecCCC
Q 045580 270 SLNLSENGFE-VRIPSSMSEMKRLESLDLSSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQG--EV------VFPNS 336 (764)
Q Consensus 270 ~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~l~~n~l~~--~~------~~~~~ 336 (764)
.|+|..+.++ ......+..+++|+.|+++++.+.+. ++.. +...+.++.++++++.+.. .. .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4677777776 34555667788899999999998532 3332 3567789999999998773 11 46678
Q ss_pred CCCceEEcccccCCCcccccccCCCC---CCEEeCcCCccCCC----ccccccCC-CCCCEEECcCCCCCCCCCCcccCC
Q 045580 337 TNLCWLYLNNNHFSGKIQDGLSKATS---LLELDLSNNMLYGQ----IPHWFGNL-SGLQFLDISENQLSGSVPSSFNLS 408 (764)
Q Consensus 337 ~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~ 408 (764)
++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.+. +...+..+ ++|+.|++++|.+++....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~----- 155 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE----- 155 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH-----
Confidence 89999999999998666665555544 88899988887632 22334455 6677777777766632211
Q ss_pred CccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCc----chhhhhcCCCccEEEccCCcCCcc----CCccccCCC
Q 045580 409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS----IPIWINEFSYLGILLLRGNQLKGN----IPNQLCHLS 480 (764)
Q Consensus 409 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~ 480 (764)
.++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..++
T Consensus 156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 1223344555666666666666532 223344445677777776666533 233455667
Q ss_pred CCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccc
Q 045580 481 LLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKR 560 (764)
Q Consensus 481 ~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 560 (764)
+|++|++++|.+++.....+....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~-------------------------------------------------------- 245 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASAL-------------------------------------------------------- 245 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHH--------------------------------------------------------
Confidence 788888888877642221111100
Q ss_pred cccccccccccccEEEcccCcccc----cCCccccCccccceecccccccccc----cCccccCC-CCCCEEECcCCcC
Q 045580 561 YESYKGDILNYMTGLDFSCNELTG----DIPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNL-KMIESLDLSHNDL 630 (764)
Q Consensus 561 ~~~~~~~~l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~LdLs~N~l 630 (764)
. ...+.|+.|++++|.++. .+...+..+++|+.+++++|.++.. ....+... +.|++||+.+|.+
T Consensus 246 ----~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 246 ----L-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ----h-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 0 002367788888888762 3344556667888888888888855 44455555 6888888888764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.4e-19 Score=155.75 Aligned_cols=189 Identities=28% Similarity=0.525 Sum_probs=155.6
Q ss_pred CCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCC
Q 045580 401 VPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS 480 (764)
Q Consensus 401 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 480 (764)
++..|.++..+.|.+++|+++ .+|..++.+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. ..|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 445556777888888888887 45557888899999999999998 78888999999999999999988 7899999999
Q ss_pred CCCEEeCCCCcCcC-CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580 481 LLNILDLSYNKFNG-PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK 559 (764)
Q Consensus 481 ~L~~L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 559 (764)
.|++||+++|++.. .+|..|..
T Consensus 103 ~levldltynnl~e~~lpgnff~--------------------------------------------------------- 125 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------- 125 (264)
T ss_pred hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence 99999999998863 33433322
Q ss_pred ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580 560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT 639 (764)
Q Consensus 560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~ 639 (764)
+..|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+. ..|.+++.++.|+.|.+.+|+++ .+|..++
T Consensus 126 ---------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 126 ---------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred ---------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 235677889999998 89999999999999999999988 79999999999999999999999 6777777
Q ss_pred CCCCC---CeEeccCCccccCCCCC
Q 045580 640 ELNFL---SNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 640 ~l~~L---~~L~ls~N~l~g~~p~~ 661 (764)
.+.-+ +.+.+.+|++.-+|...
T Consensus 194 ~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 194 NLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred hhhhhhhHHHHhhhhCCCCChHHHH
Confidence 76533 56677888887766643
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=143.64 Aligned_cols=167 Identities=28% Similarity=0.474 Sum_probs=148.4
Q ss_pred hcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhc
Q 045580 428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT 507 (764)
Q Consensus 428 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~ 507 (764)
+-++...+.|.|++|+++ .+|..+..+.+|++|++.+|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs----- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS----- 100 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence 345678889999999999 77888999999999999999999 78999999999999999999886 56666554
Q ss_pred ccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc-cC
Q 045580 508 LGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG-DI 586 (764)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~i 586 (764)
++.|+.|||+.|++.. ..
T Consensus 101 -------------------------------------------------------------~p~levldltynnl~e~~l 119 (264)
T KOG0617|consen 101 -------------------------------------------------------------FPALEVLDLTYNNLNENSL 119 (264)
T ss_pred -------------------------------------------------------------CchhhhhhccccccccccC
Confidence 4478889999999864 58
Q ss_pred CccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCC
Q 045580 587 PSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFA 665 (764)
Q Consensus 587 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~ 665 (764)
|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++-..|+.+++.
T Consensus 120 pgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 120 PGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred CcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 999999999999999999998 89999999999999999999998 789999999999999999999998888765543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=4.9e-15 Score=167.78 Aligned_cols=117 Identities=38% Similarity=0.648 Sum_probs=105.8
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS 650 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 650 (764)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCC--CCCCCCCccccCCCCCCCCCCCCCCC
Q 045580 651 YNHLSGPTPNA--GQFANFDEQNYGGNSGLCGPRINKSC 687 (764)
Q Consensus 651 ~N~l~g~~p~~--~~~~~~~~~~~~gn~~lc~~~~~~~c 687 (764)
+|+++|.+|.. ..+.......+.||+++|+.|....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999975 22233455678999999997655566
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=2e-14 Score=148.91 Aligned_cols=176 Identities=32% Similarity=0.487 Sum_probs=119.8
Q ss_pred CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486 (764)
Q Consensus 407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 486 (764)
+.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.+++|+.|++. ..|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 334445666666665 56666666667777777777776 66777777777777777777777 5666676665 67777
Q ss_pred CCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccc
Q 045580 487 LSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG 566 (764)
Q Consensus 487 Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (764)
+++|+++ .+|..++.
T Consensus 150 ~sNNkl~-~lp~~ig~---------------------------------------------------------------- 164 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL---------------------------------------------------------------- 164 (722)
T ss_pred EecCccc-cCCccccc----------------------------------------------------------------
Confidence 7777765 34433321
Q ss_pred cccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCe
Q 045580 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSN 646 (764)
Q Consensus 567 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 646 (764)
...|..||.|.|++. .+|..++.+.+|+.|++..|++. ..|++++.|+ |..||+|+|+++ .||-.|..|+.|++
T Consensus 165 --~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 165 --LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred --chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhee
Confidence 225666777777776 57777777777777777777776 5666666554 667777777777 57777777777777
Q ss_pred EeccCCccccC
Q 045580 647 FNVSYNHLSGP 657 (764)
Q Consensus 647 L~ls~N~l~g~ 657 (764)
|-|.+|+|..+
T Consensus 239 l~LenNPLqSP 249 (722)
T KOG0532|consen 239 LQLENNPLQSP 249 (722)
T ss_pred eeeccCCCCCC
Confidence 77777777653
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=9.3e-12 Score=135.22 Aligned_cols=199 Identities=34% Similarity=0.487 Sum_probs=114.9
Q ss_pred EEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCC-CCCEEEccCCcCCCcchhhhhcCCCccEEEccCCc
Q 045580 389 FLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS-SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467 (764)
Q Consensus 389 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 467 (764)
.+++..|.+..........+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 345555544333333334445555555555555 2333333342 6666666666665 444456666666666666666
Q ss_pred CCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccccccc
Q 045580 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKA 547 (764)
Q Consensus 468 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 547 (764)
+. .+|...+.++.|+.|++++|+++ .+|....
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~---------------------------------------------- 206 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE---------------------------------------------- 206 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhh----------------------------------------------
Confidence 66 44444445666666777776665 2222110
Q ss_pred CCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcC
Q 045580 548 SGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627 (764)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~ 627 (764)
.+..|++|++++|+.. .++..+.++.++..+.+++|++. ..+..++.+++++.|++++
T Consensus 207 --------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 207 --------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred --------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence 0124566666666433 45566667777777777777766 3366667777777777777
Q ss_pred CcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 628 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
|+++. ++. +..+.+++.|++++|.++...|..
T Consensus 265 n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 265 NQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 77773 333 667777777777777777666544
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=2.2e-11 Score=138.22 Aligned_cols=91 Identities=33% Similarity=0.545 Sum_probs=83.9
Q ss_pred ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCC-CCCCeEe
Q 045580 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTEL-NFLSNFN 648 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ 648 (764)
++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 479999999999999999999999999999999999999999999999999999999999999999998774 4678999
Q ss_pred ccCCccccCCCC
Q 045580 649 VSYNHLSGPTPN 660 (764)
Q Consensus 649 ls~N~l~g~~p~ 660 (764)
+++|+..|.+|.
T Consensus 522 ~~~N~~lc~~p~ 533 (623)
T PLN03150 522 FTDNAGLCGIPG 533 (623)
T ss_pred ecCCccccCCCC
Confidence 999987766654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.8e-11 Score=130.41 Aligned_cols=202 Identities=35% Similarity=0.488 Sum_probs=143.8
Q ss_pred EEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCC-CccEEeccCCccccccchhhcCCCCCCEEEccCCc
Q 045580 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLS-SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443 (764)
Q Consensus 365 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 443 (764)
.+++..|.+... ...+..++.++.|++.+|.++...+...... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 456666655322 2234445667777777777775444443443 7888888888776 444567788899999999998
Q ss_pred CCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccccc
Q 045580 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQR 523 (764)
Q Consensus 444 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 523 (764)
++ .+|...+..+.|+.|++++|++. .+|........|++|.+++|++. ..+..+.+
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~--------------------- 230 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN--------------------- 230 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh---------------------
Confidence 88 55665657888999999999988 67766656677999999998632 12211111
Q ss_pred chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccc
Q 045580 524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSH 603 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 603 (764)
+..+..+.+++|++. .++..++.+++++.|++++
T Consensus 231 ---------------------------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 231 ---------------------------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred ---------------------------------------------cccccccccCCceee-eccchhccccccceecccc
Confidence 335666778888887 4578888999999999999
Q ss_pred cccccccCccccCCCCCCEEECcCCcCcccCcccccC
Q 045580 604 NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE 640 (764)
Q Consensus 604 N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 640 (764)
|.++ .++. ++.+.+++.||+++|.++...|.....
T Consensus 265 n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 265 NQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred cccc-cccc-ccccCccCEEeccCccccccchhhhcc
Confidence 9998 4454 899999999999999999776655443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=8.8e-13 Score=136.88 Aligned_cols=41 Identities=32% Similarity=0.659 Sum_probs=22.4
Q ss_pred ccEEEcccCcccccCCccccCccccceecccccccccccCccc
Q 045580 572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSL 614 (764)
Q Consensus 572 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l 614 (764)
|..||+|+|+++ .||-+|.+++.|++|-|.+|.+. ..|..+
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 444555555555 45555555555555555555555 344433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-11 Score=121.85 Aligned_cols=111 Identities=22% Similarity=0.241 Sum_probs=55.0
Q ss_pred cCCCCCCEEECCCCCCCCcch-hhhhCCCCCCEEECcCCCCCCCCCh-hhhccCCCCcEEEccCCCCCCccccCCCCCCC
Q 045580 93 SNLTHIKVLDLSSNQLTGNLQ-SVIANIKSLEYLSLDDNNFEGSFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEY 170 (764)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 170 (764)
.++.+|+...|.++....... .....|++++.|||++|-|..-.+. .....+++|+.|+++.|.+....+.......+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 355566666666665542111 2445566666666666655422111 12344556666666655543332222222334
Q ss_pred CccEEEcCCCCCC--CccHhhhCCCCccEEEccCC
Q 045580 171 QLKALNLRNCSLH--ALPSFLLHQLDLRFIDLSHN 203 (764)
Q Consensus 171 ~L~~L~L~~n~l~--~lp~~l~~~~~L~~L~Ls~n 203 (764)
+|+.|.|+.|.++ .+...+..+++|+.|+|.+|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 5666666666663 23334444555666666655
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.2e-11 Score=114.83 Aligned_cols=86 Identities=26% Similarity=0.294 Sum_probs=50.4
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCccc-CcccccCCCCCCeEec
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ-IPPQLTELNFLSNFNV 649 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~l 649 (764)
+|+.||||+|.++ .+-.+-..+.+.+.|+|+.|.|. .-+.++.+-+|..||+++|+|... --..+++|+-|+.+.|
T Consensus 330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 4444555555444 23333334455566666666664 234466667777777777777632 1245677777788888
Q ss_pred cCCccccCCC
Q 045580 650 SYNHLSGPTP 659 (764)
Q Consensus 650 s~N~l~g~~p 659 (764)
.+|++.+.+.
T Consensus 407 ~~NPl~~~vd 416 (490)
T KOG1259|consen 407 TGNPLAGSVD 416 (490)
T ss_pred cCCCccccch
Confidence 8888877443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=3.6e-11 Score=115.25 Aligned_cols=207 Identities=24% Similarity=0.216 Sum_probs=138.8
Q ss_pred ccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccC-CccccccchhhcCC
Q 045580 353 IQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM-NAFNGSIPGALRRS 431 (764)
Q Consensus 353 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~ 431 (764)
.|-.+.-..+|+.+.++.+.-. .+.+....-|.|+++.+.+..++ ..|.......+....-.. .-..|.........
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchH
Confidence 3444455667777888777543 22232333467888877665544 222222222222211111 11223333334445
Q ss_pred CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhccccc
Q 045580 432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQA 511 (764)
Q Consensus 432 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~ 511 (764)
..|+++||++|.|+ .+.+++.-+|.++.|++++|.+. .+ ..+..+++|+.||||+|.++.. - .+.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~-~----Gwh------- 348 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC-V----GWH------- 348 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhh-h----hhH-------
Confidence 68999999999998 67778888999999999999998 33 3388899999999999987621 0 000
Q ss_pred CCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc
Q 045580 512 AGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG 591 (764)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 591 (764)
..+.+++.|.|+.|.+.. -..++
T Consensus 349 -------------------------------------------------------~KLGNIKtL~La~N~iE~--LSGL~ 371 (490)
T KOG1259|consen 349 -------------------------------------------------------LKLGNIKTLKLAQNKIET--LSGLR 371 (490)
T ss_pred -------------------------------------------------------hhhcCEeeeehhhhhHhh--hhhhH
Confidence 114478899999999862 34577
Q ss_pred Cccccceeccccccccccc-CccccCCCCCCEEECcCCcCccc
Q 045580 592 SLSEIRALNLSHNFLSGSI-PQSLSNLKMIESLDLSHNDLSGQ 633 (764)
Q Consensus 592 ~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~~~ 633 (764)
.+-+|..||+++|+|.... ...+++++-|+.+.|.+|.+.+.
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 7888999999999997442 36799999999999999999954
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=8.2e-11 Score=115.78 Aligned_cols=164 Identities=19% Similarity=0.204 Sum_probs=105.7
Q ss_pred ccCCCCCcEEECcCCccccc----CchhhcCCCCCCEEECCCCCC---CCcchh-------hhhCCCCCCEEECcCCCCC
Q 045580 68 ICELKKLVELDLSKNNLYGH----LSPCLSNLTHIKVLDLSSNQL---TGNLQS-------VIANIKSLEYLSLDDNNFE 133 (764)
Q Consensus 68 ~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l---~~~~~~-------~~~~l~~L~~L~Ls~n~l~ 133 (764)
+..+..++.|+||+|.+... +...+.+.++|+..++|+-.- ...+|+ ++..+++|++||||.|.|.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44678899999999988643 456677888999999987522 223443 4566789999999999885
Q ss_pred CCCC---hhhhccCCCCcEEEccCCCCCCccccC------------CCCCCCCccEEEcCCCCCCCc-----cHhhhCCC
Q 045580 134 GSFS---FNSLKNHSKLQVFKLSNSLVKIETEEF------------PGLPEYQLKALNLRNCSLHAL-----PSFLLHQL 193 (764)
Q Consensus 134 ~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~~L~~L~L~~n~l~~l-----p~~l~~~~ 193 (764)
-..+ ...++++..|++|.|.||.+....... .....++|+.+..++|++..- ...+..++
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 3222 134567888888888888763222111 112234577777777777443 24455666
Q ss_pred CccEEEccCCCCCCc---cchHHhhcCCCCCEEEccCCcCc
Q 045580 194 DLRFIDLSHNKLQGT---FPSWLLQNNTKLDTLYLLNNSLS 231 (764)
Q Consensus 194 ~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~ 231 (764)
.|+.+.++.|.|... .-..-+..++.|++|+|.+|.++
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 777777777766421 11222346677777777777665
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.7e-11 Score=119.10 Aligned_cols=207 Identities=22% Similarity=0.213 Sum_probs=108.5
Q ss_pred ccEEEcCCCCCCCcc--HhhhCCCCccEEEccCCCCCCccc-hHHhhcCCCCCEEEccCCcCccCCCC--CCCCCCccEE
Q 045580 172 LKALNLRNCSLHALP--SFLLHQLDLRFIDLSHNKLQGTFP-SWLLQNNTKLDTLYLLNNSLSGNFQL--PSSKHDLLRI 246 (764)
Q Consensus 172 L~~L~L~~n~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~L~~L 246 (764)
|+++.|.++.+...+ +....+++++.||||.|-+..-.+ ..+.+.+++|+.|+|+.|.+...... ...++.|+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 555555555554443 355566777777777775552222 23445677777777777766532111 1145566666
Q ss_pred EccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCch-hhhhCCCCCCEEEeecc
Q 045580 247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR-QFLSGCFSLSFLSLSDN 325 (764)
Q Consensus 247 ~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~l~~n 325 (764)
.++.|.++-.--..+...+|+|+.|+|..|...........-+..|++|||++|++. ..+. .....++.|+.|+++.+
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcccc
Confidence 666666653222233334667777777766432222333344556666666666655 2221 11233444444444444
Q ss_pred cccceeecCCCCCCceEEcccccCCCccccc-----ccCCCCCCEEeCcCCccCCC-ccccccCCCCCCEEECcCCCCCC
Q 045580 326 HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDG-----LSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 326 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
.+.+.. .|+. ....++|++|++..|++... ....+..+++|+.|.+..|.++.
T Consensus 282 gi~si~---------------------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 282 GIASIA---------------------EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred Ccchhc---------------------CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 443211 1111 23456777777777776421 12234456677777777777664
Q ss_pred C
Q 045580 400 S 400 (764)
Q Consensus 400 ~ 400 (764)
.
T Consensus 341 e 341 (505)
T KOG3207|consen 341 E 341 (505)
T ss_pred c
Confidence 3
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=5.5e-11 Score=117.01 Aligned_cols=111 Identities=22% Similarity=0.268 Sum_probs=56.0
Q ss_pred CCCCCCEEECcCCCCCCCCCCcc-----cCCCccEEeccCCccccccch-------------hhcCCCCCCEEEccCCcC
Q 045580 383 NLSGLQFLDISENQLSGSVPSSF-----NLSSLRRLYMHMNAFNGSIPG-------------ALRRSSSLTVLDLRDNQF 444 (764)
Q Consensus 383 ~l~~L~~L~L~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~-------------~~~~~~~L~~L~L~~n~l 444 (764)
.+++|++|+||.|-+....+..+ .+..|++|.|.+|.+...-.. ....-+.|+.++..+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 44455555555555543333322 345555566655544311111 122345666666666665
Q ss_pred CCcc----hhhhhcCCCccEEEccCCcCCcc----CCccccCCCCCCEEeCCCCcCc
Q 045580 445 SGSI----PIWINEFSYLGILLLRGNQLKGN----IPNQLCHLSLLNILDLSYNKFN 493 (764)
Q Consensus 445 ~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 493 (764)
.... ...+...+.|+.+.+..|.|... +...+..++.|++|||.+|-|+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 4321 23344556666666666655421 1234455666666666666554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.2e-10 Score=104.32 Aligned_cols=130 Identities=28% Similarity=0.283 Sum_probs=44.6
Q ss_pred cCCCCCcEEECcCCcccccCchhhc-CCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCC
Q 045580 69 CELKKLVELDLSKNNLYGHLSPCLS-NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKL 147 (764)
Q Consensus 69 ~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 147 (764)
.+..++++|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.. +.+..+++|++|++++|+++ .++......+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 3445688999999998854 3455 578899999999998853 34778889999999999887 4442222456777
Q ss_pred cEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCc--cchHHhhcCCCCCEEEc
Q 045580 148 QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGT--FPSWLLQNNTKLDTLYL 225 (764)
Q Consensus 148 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~L 225 (764)
++|++++|.+.... .+ ..+..+++|+.|++.+|.++.. ....+...+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~----------------------~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLN----------------------EL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCC----------------------CC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChH----------------------Hh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77776666552211 11 3455667777777777776522 12234456778887765
Q ss_pred c
Q 045580 226 L 226 (764)
Q Consensus 226 ~ 226 (764)
.
T Consensus 148 ~ 148 (175)
T PF14580_consen 148 Q 148 (175)
T ss_dssp E
T ss_pred E
Confidence 4
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=3e-10 Score=105.28 Aligned_cols=109 Identities=28% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcE
Q 045580 191 HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLS 270 (764)
Q Consensus 191 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 270 (764)
+..++++|+|++|+|+ .+. .+...+.+|+.|+|++|.++... ....++.|+.|++++|+++ .++..+...+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 3445677777777776 333 22224566777777777766542 2334566666666666666 454444333666666
Q ss_pred EEcccCCCCcc-CCccccCCCCCCEEECCCCccc
Q 045580 271 LNLSENGFEVR-IPSSMSEMKRLESLDLSSNNFS 303 (764)
Q Consensus 271 L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~ 303 (764)
|++++|+|... .-..+..+++|+.|++.+|++.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666666431 1134455566666666666554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.3e-09 Score=81.52 Aligned_cols=61 Identities=39% Similarity=0.554 Sum_probs=54.9
Q ss_pred CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCC
Q 045580 72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 132 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 132 (764)
++|++|++++|+++...+.+|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988778999999999999999999988888999999999999999874
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=2.6e-09 Score=81.27 Aligned_cols=59 Identities=37% Similarity=0.536 Sum_probs=28.8
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCc
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHND 629 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 629 (764)
+|++|++++|+++...+..|.++++|+.|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333444555555555555555544444444555555555555544
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=6.2e-10 Score=121.02 Aligned_cols=243 Identities=26% Similarity=0.266 Sum_probs=125.3
Q ss_pred CCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccC
Q 045580 338 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM 417 (764)
Q Consensus 338 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 417 (764)
.++.+.+..|.+.. +...+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|+...+- -.++.|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l-~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL-STLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch-hhccchhhheecc
Confidence 34444444444442 222344555666666666665522 22245566666666666666533221 1333455566666
Q ss_pred CccccccchhhcCCCCCCEEEccCCcCCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCc
Q 045580 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI 496 (764)
Q Consensus 418 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 496 (764)
|.+... ..+..++.|+.+++++|+++..-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.++..-
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceecc
Confidence 655422 123335566666666666653322 1 3455556666666665542 222223333444455555543111
Q ss_pred ChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccc--cccE
Q 045580 497 PVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN--YMTG 574 (764)
Q Consensus 497 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~ 574 (764)
+. ..+. +|+.
T Consensus 225 ~l--------------------------------------------------------------------~~~~~~~L~~ 236 (414)
T KOG0531|consen 225 GL--------------------------------------------------------------------NELVMLHLRE 236 (414)
T ss_pred Cc--------------------------------------------------------------------ccchhHHHHH
Confidence 00 0011 2566
Q ss_pred EEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCccc---Cccc-ccCCCCCCeEecc
Q 045580 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ---IPPQ-LTELNFLSNFNVS 650 (764)
Q Consensus 575 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~ls 650 (764)
+++++|++. .++..+..+..+..|++++|++... ..+.....+..+..+.|.+... .... ....+.+..+.+.
T Consensus 237 l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
T KOG0531|consen 237 LYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE 313 (414)
T ss_pred HhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence 777777776 4445666777777777777777632 2344556666677777766521 1111 3445667777777
Q ss_pred CCccccCCC
Q 045580 651 YNHLSGPTP 659 (764)
Q Consensus 651 ~N~l~g~~p 659 (764)
+|+.....+
T Consensus 314 ~~~~~~~~~ 322 (414)
T KOG0531|consen 314 LNPIRKISS 322 (414)
T ss_pred cCccccccc
Confidence 777766554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2e-09 Score=117.04 Aligned_cols=222 Identities=29% Similarity=0.296 Sum_probs=134.3
Q ss_pred CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 344 (764)
Q Consensus 265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L 344 (764)
+.+|+.|++.+|.+.. +...+..+++|++|++++|.+. .+.. +..++.|+.|++++|.+.....+..++.|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 5566666666666653 2222556667777777777666 3322 2345557777777777776666666777777777
Q ss_pred ccccCCCccc-ccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCC--CccEEeccCCccc
Q 045580 345 NNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLS--SLRRLYMHMNAFN 421 (764)
Q Consensus 345 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~ 421 (764)
++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-+.. .+. .|+.+++++|.+.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~-~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN-ELVMLHLRELYLSGNRIS 245 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc-cchhHHHHHHhcccCccc
Confidence 7777764433 2 45677777788888877532 33444445555577777766433221 222 3778888888776
Q ss_pred cccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCcc---CCcc-ccCCCCCCEEeCCCCcCcCCcC
Q 045580 422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN---IPNQ-LCHLSLLNILDLSYNKFNGPIP 497 (764)
Q Consensus 422 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~Ls~n~l~~~~p 497 (764)
. .+..+..+..+..|++.+|++... ..+...+.+..+....|++... .... ....+.++.+.+..|.+....+
T Consensus 246 ~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 246 R-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred c-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 3 224556677888888888877643 2234445566666666665522 1111 4556778888888887765444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=2.5e-08 Score=115.74 Aligned_cols=226 Identities=24% Similarity=0.231 Sum_probs=123.6
Q ss_pred CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCC
Q 045580 239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 318 (764)
Q Consensus 239 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 318 (764)
.++.|+.||+++|.--+.+|..++. +-+|++|+++++.+. .+|..+.++++|.+|++..+.....+| .....+++|+
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr 645 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLR 645 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-chhhhccccc
Confidence 4555556666655444578888875 788888888888877 678888888888888888776653443 3345688888
Q ss_pred EEEeeccccccee----ecCCCCCCceEEcccccCCCcccccccCCCCCC----EEeCcCCccCCCccccccCCCCCCEE
Q 045580 319 FLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL----ELDLSNNMLYGQIPHWFGNLSGLQFL 390 (764)
Q Consensus 319 ~L~l~~n~l~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L 390 (764)
+|.+......... .+.++.+|+.+....... .+...+..++.|. .+.+..+... ..+..+..+.+|+.|
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEEL 722 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceE
Confidence 8887665422111 334445555555433322 1111122222222 2222222222 344556777788888
Q ss_pred ECcCCCCCCCCCCcc------c-CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEc
Q 045580 391 DISENQLSGSVPSSF------N-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLL 463 (764)
Q Consensus 391 ~L~~n~l~~~~~~~~------~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 463 (764)
.+.++.+........ . ++++..+...++... ..+....-.++|+.|.+..+.....+......+..+..+.+
T Consensus 723 ~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~ 801 (889)
T KOG4658|consen 723 SILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL 801 (889)
T ss_pred EEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEe
Confidence 888877753322211 1 223333333333222 11222234567777777777665554444555555555555
Q ss_pred cCCcCCcc
Q 045580 464 RGNQLKGN 471 (764)
Q Consensus 464 ~~n~l~~~ 471 (764)
..+.+.+.
T Consensus 802 ~f~~~~~l 809 (889)
T KOG4658|consen 802 PFNKLEGL 809 (889)
T ss_pred cccccccc
Confidence 55555543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=4.5e-08 Score=113.71 Aligned_cols=198 Identities=22% Similarity=0.213 Sum_probs=94.1
Q ss_pred CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCC---CCCCCccEEE
Q 045580 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP---SSKHDLLRID 247 (764)
Q Consensus 171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~L~~L~ 247 (764)
+|++|++++..+..+|..+.++..|.+|++..+.....+| .....+++|++|.+............ ..+.+|+.+.
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 3555666666666777777777777777777766543443 33335777777777665422211111 2344444444
Q ss_pred ccCCCCCCCCChhHhhcCCCCc----EEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhC------CCCC
Q 045580 248 ISHNKFSGQLPGNMGKILPELL----SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG------CFSL 317 (764)
Q Consensus 248 ls~n~l~~~~~~~~~~~l~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~------l~~L 317 (764)
...... .+-..+. .++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.. +....... ++++
T Consensus 675 ~~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 675 ITISSV--LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNL 749 (889)
T ss_pred eecchh--HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHH
Confidence 433222 0001110 122222 3333333322 345567777888888888877652 21111000 1122
Q ss_pred CEEEeecccccce-eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccC
Q 045580 318 SFLSLSDNHLQGE-VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY 374 (764)
Q Consensus 318 ~~L~l~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 374 (764)
..+...++..... ......++|+.|.+..+.....+.+....+..++.+.+..+.+.
T Consensus 750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 2222222211111 12223466777777666655554444444555555444444444
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=1e-08 Score=87.40 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=56.4
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS 650 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 650 (764)
.++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|.-+..|.++-+||.-+|.+. +||..+-.-+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 4566677777776 56777777777777777777776 55666666777777777777666 455443333334445556
Q ss_pred CCccccCCCCCC
Q 045580 651 YNHLSGPTPNAG 662 (764)
Q Consensus 651 ~N~l~g~~p~~~ 662 (764)
++++.+.+|...
T Consensus 155 nepl~~~~~~kl 166 (177)
T KOG4579|consen 155 NEPLGDETKKKL 166 (177)
T ss_pred CCcccccCcccc
Confidence 666666666553
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=9e-08 Score=92.36 Aligned_cols=216 Identities=23% Similarity=0.277 Sum_probs=116.7
Q ss_pred ccccCCCCCcEEECcCCcccccC-chhh-cCCCCCCEEECCCCCCCC--cchhhhhCCCCCCEEECcCCCCCCCCChhhh
Q 045580 66 TGICELKKLVELDLSKNNLYGHL-SPCL-SNLTHIKVLDLSSNQLTG--NLQSVIANIKSLEYLSLDDNNFEGSFSFNSL 141 (764)
Q Consensus 66 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~l-~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l 141 (764)
-++...+.++.|-+.++.|...- ...| ...+.++.|||.+|.|+. .+...+.++|.|++|+|+.|.+...|.
T Consensus 39 ~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~---- 114 (418)
T KOG2982|consen 39 LGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK---- 114 (418)
T ss_pred eeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc----
Confidence 34445556667777777765431 1223 356788888999988884 345566788888888888888763332
Q ss_pred ccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCC--CCccHhhhCCCCccEEEccCCCCCCc-cchH-HhhcC
Q 045580 142 KNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL--HALPSFLLHQLDLRFIDLSHNKLQGT-FPSW-LLQNN 217 (764)
Q Consensus 142 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~-~~~~-~~~~l 217 (764)
.++ .+..+|+.|-|.+..+ +.....+..++.+++|.+|.|.+.-. +... .-..-
T Consensus 115 -~lp---------------------~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 115 -SLP---------------------LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred -cCc---------------------ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 111 2233455555555544 33445566666777777777643210 0000 00001
Q ss_pred CCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccC-CccccCCCCCCEEE
Q 045580 218 TKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI-PSSMSEMKRLESLD 296 (764)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~ 296 (764)
+.+++|.+..|.. .+..+-|++ ...+|++..+-+..|.+.... -..+..++.+..|+
T Consensus 173 ~~v~tlh~~~c~~--------------~~w~~~~~l--------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 173 TEVLTLHQLPCLE--------------QLWLNKNKL--------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhhhhhcCCcHH--------------HHHHHHHhH--------HhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 1233333322221 122222222 233677777777777664321 23344556666777
Q ss_pred CCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580 297 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329 (764)
Q Consensus 297 Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 329 (764)
|+.+++...-..+.+.++++|..|.++++.+.+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 777776543333345666777777777766654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.3e-08 Score=96.36 Aligned_cols=156 Identities=23% Similarity=0.197 Sum_probs=83.5
Q ss_pred CCcEEECcCCccccc-CchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCC-CCCCCChhhhccCCCCcEE
Q 045580 73 KLVELDLSKNNLYGH-LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN-FEGSFSFNSLKNHSKLQVF 150 (764)
Q Consensus 73 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L 150 (764)
.|++||||...|+.. +-..+..+.+|+.|.|.++++.+.+...++...+|+.|+|+.+. ++..--.-.+++++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477778877776632 33445677778888888888777777777777788888887764 2211111235667777777
Q ss_pred EccCCCCCCcccc-CCCCCCCCccEEEcCCCCC----CCccHhhhCCCCccEEEccCCCC-CCccchHHhhcCCCCCEEE
Q 045580 151 KLSNSLVKIETEE-FPGLPEYQLKALNLRNCSL----HALPSFLLHQLDLRFIDLSHNKL-QGTFPSWLLQNNTKLDTLY 224 (764)
Q Consensus 151 ~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l----~~lp~~l~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~ 224 (764)
+++.+....+... ...--..+|+.|+++++.- ..+..-...+++|.+||||+|.. +......++ +++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence 7776654322210 0000012355666665531 22223334455566666655432 222222222 445555555
Q ss_pred ccCCc
Q 045580 225 LLNNS 229 (764)
Q Consensus 225 L~~n~ 229 (764)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 55443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.3e-08 Score=109.14 Aligned_cols=127 Identities=24% Similarity=0.218 Sum_probs=95.4
Q ss_pred CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccC
Q 045580 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH 250 (764)
Q Consensus 171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~ 250 (764)
.|...+.+.|.+..+..++.-++.|+.|+|++|+++. .. ....++.|++|||++|.+...+.+...-..|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 3888899999999999999889999999999999983 33 34589999999999999987665554444588888888
Q ss_pred CCCCCCCChhHhhcCCCCcEEEcccCCCCccC-CccccCCCCCCEEECCCCccc
Q 045580 251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRI-PSSMSEMKRLESLDLSSNNFS 303 (764)
Q Consensus 251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~ 303 (764)
|.++ ++- .+. ++.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+-
T Consensus 242 N~l~-tL~-gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALT-TLR-GIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHH-hhh-hHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8876 332 233 3778888888888665421 123455667888888888775
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.5e-08 Score=97.62 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=17.1
Q ss_pred CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCC
Q 045580 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300 (764)
Q Consensus 265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 300 (764)
+.+|+.|.+.++++...+...++.-.+|+.|+++.+
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 444444445444444444444444444555555443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.6e-07 Score=90.69 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=67.0
Q ss_pred CCCCCcEEECcCCccccc--CchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCC
Q 045580 70 ELKKLVELDLSKNNLYGH--LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKL 147 (764)
Q Consensus 70 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 147 (764)
..++++.|||.+|.|++- +...+.++|+|++|+|+.|.+...+-..-..+.+|++|-|.+..+.-....+.+..++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 457899999999999853 445678999999999999999854322114567999999998877543334567788899
Q ss_pred cEEEccCCC
Q 045580 148 QVFKLSNSL 156 (764)
Q Consensus 148 ~~L~l~~~~ 156 (764)
+.|.++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 999988774
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2.1e-08 Score=107.61 Aligned_cols=127 Identities=31% Similarity=0.396 Sum_probs=79.1
Q ss_pred CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 321 (764)
Q Consensus 242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 321 (764)
.|...+.+.|.+. .+...+ ..++.|+.|+|++|+++... .+..|++|++|||++|.+. .+|.--..++. |+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 3445555666554 333333 33677777777777776432 6677777777777777776 56643223444 77777
Q ss_pred eecccccceeecCCCCCCceEEcccccCCCccc-ccccCCCCCCEEeCcCCccC
Q 045580 322 LSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLY 374 (764)
Q Consensus 322 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 374 (764)
+++|.++..-.+.++.+|+.||+++|-+.+.-. ..+..+..|+.|.|.+|.+-
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 777777766667777777777777776654211 12334556677777777653
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=7.6e-07 Score=85.00 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=103.8
Q ss_pred cCCCCCcEEECcCCccccc----CchhhcCCCCCCEEECCCCCCC---Ccch-------hhhhCCCCCCEEECcCCCCCC
Q 045580 69 CELKKLVELDLSKNNLYGH----LSPCLSNLTHIKVLDLSSNQLT---GNLQ-------SVIANIKSLEYLSLDDNNFEG 134 (764)
Q Consensus 69 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~---~~~~-------~~~~~l~~L~~L~Ls~n~l~~ 134 (764)
..+..++.+|||+|-|... +...+.+-.+|+..+++.-... ..++ .++.+|++|+.++||.|.|..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3467889999999988754 3445667788999888875322 1222 356788999999999999875
Q ss_pred CCCh---hhhccCCCCcEEEccCCCCC-CccccC-----------CCCCCCCccEEEcCCCCCCCccH-----hhhCCCC
Q 045580 135 SFSF---NSLKNHSKLQVFKLSNSLVK-IETEEF-----------PGLPEYQLKALNLRNCSLHALPS-----FLLHQLD 194 (764)
Q Consensus 135 ~~~~---~~l~~l~~L~~L~l~~~~~~-~~~~~~-----------~~~~~~~L~~L~L~~n~l~~lp~-----~l~~~~~ 194 (764)
..|. ..+++-+.|.+|.+++|... +....+ .....+.|+......|++...|. .+....+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 5552 35677788899998888762 111111 11234557888888887754442 2333356
Q ss_pred ccEEEccCCCCCCccc-----hHHhhcCCCCCEEEccCCcCc
Q 045580 195 LRFIDLSHNKLQGTFP-----SWLLQNNTKLDTLYLLNNSLS 231 (764)
Q Consensus 195 L~~L~Ls~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~ 231 (764)
|+++.+..|.|...-. ..+ ..+.+|+.|+|..|.++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft 227 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFT 227 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHH-HHhCcceeeeccccchh
Confidence 7777777777652211 112 24567777777777665
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=1.2e-06 Score=83.69 Aligned_cols=159 Identities=22% Similarity=0.248 Sum_probs=79.1
Q ss_pred CCCCccEEEccCCCCCCCCChhHhh---cCCCCcEEEcccCCCCccCCc-------------cccCCCCCCEEECCCCcc
Q 045580 239 SKHDLLRIDISHNKFSGQLPGNMGK---ILPELLSLNLSENGFEVRIPS-------------SMSEMKRLESLDLSSNNF 302 (764)
Q Consensus 239 ~~~~L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l 302 (764)
.++.|+.+++|.|.+....|..+.. .-+.|++|.+++|.+...-.. -...-|.|+++....|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 4455555555555554444443322 134566666666654321111 122346677777777776
Q ss_pred cccCchhh----hhCCCCCCEEEeeccccccee-------ecCCCCCCceEEcccccCCCcc----cccccCCCCCCEEe
Q 045580 303 SGELPRQF----LSGCFSLSFLSLSDNHLQGEV-------VFPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELD 367 (764)
Q Consensus 303 ~~~~p~~~----~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~ 367 (764)
. ..|... +..-..|+.+.+..|.|.... .+..+.+|+.|++..|.++... ..+++..+.|+.|.
T Consensus 170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 5 333322 122246667777766665331 3344566666666666665322 22334444566666
Q ss_pred CcCCccCCCccccc------cCCCCCCEEECcCCCCC
Q 045580 368 LSNNMLYGQIPHWF------GNLSGLQFLDISENQLS 398 (764)
Q Consensus 368 L~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~ 398 (764)
+.+|-++......+ ...++|+.|...+|.+.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 66665543322221 12345555555555544
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=1.8e-06 Score=73.97 Aligned_cols=112 Identities=29% Similarity=0.444 Sum_probs=78.6
Q ss_pred ccEEEcCCCCCCCccHhhh---CCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEc
Q 045580 172 LKALNLRNCSLHALPSFLL---HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI 248 (764)
Q Consensus 172 L~~L~L~~n~l~~lp~~l~---~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 248 (764)
+..++|+.|.+..++.... ....|+..+|++|.+. .+|+.+....+.++.|+|++|.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis----------------- 90 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS----------------- 90 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-----------------
Confidence 5667788888776665443 3445677788888887 677766655555666555555554
Q ss_pred cCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhh
Q 045580 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFL 311 (764)
Q Consensus 249 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 311 (764)
.+|.++.. ++.|+.|+++.|.+. ..|..+..+.++-.|+..+|... .+|...+
T Consensus 91 -------dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 91 -------DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred -------hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 67777654 888888888888877 56777777888888888888776 6776543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=8.2e-06 Score=56.61 Aligned_cols=36 Identities=42% Similarity=0.694 Sum_probs=16.7
Q ss_pred ccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580 595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631 (764)
Q Consensus 595 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 631 (764)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 34444455555555555555544
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=5.6e-05 Score=79.06 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=40.1
Q ss_pred cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCC-cCCccCCccccCCCCCCE
Q 045580 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN-QLKGNIPNQLCHLSLLNI 484 (764)
Q Consensus 406 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 484 (764)
.+..++.|++++|.++ .+| .-..+|++|.++++.--..+|..+. ++|+.|++++| .+. .+|. +|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence 3566777777777665 334 1234577777776433234454332 46777777766 333 3332 3555
Q ss_pred EeCCCCc
Q 045580 485 LDLSYNK 491 (764)
Q Consensus 485 L~Ls~n~ 491 (764)
|+++.+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6665544
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=5.4e-05 Score=69.66 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=54.2
Q ss_pred CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee---ecCCCCCCce
Q 045580 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCW 341 (764)
Q Consensus 265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~ 341 (764)
..+...+||++|.+.. ...|..++.|.+|.+.+|+++ .|...+..-+++|+.|.+.+|.+.... .+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 4566777888887752 235677778888888888887 565555555677777777777766432 4444555555
Q ss_pred EEcccccCC
Q 045580 342 LYLNNNHFS 350 (764)
Q Consensus 342 L~L~~n~l~ 350 (764)
|.+-+|.++
T Consensus 118 Ltll~Npv~ 126 (233)
T KOG1644|consen 118 LTLLGNPVE 126 (233)
T ss_pred eeecCCchh
Confidence 555555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=4.6e-05 Score=52.85 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=27.9
Q ss_pred CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCC
Q 045580 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQ 206 (764)
Q Consensus 171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~ 206 (764)
+|++|++++|+++.+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 578888888888888877888888888888888877
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2.2e-05 Score=89.22 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCCcEEECcCCcccc-cCchhh-cCCCCCCEEECCCCCCCCc-chhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCc
Q 045580 72 KKLVELDLSKNNLYG-HLSPCL-SNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQ 148 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~-~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 148 (764)
.+|++||+++..... .-|..+ ..||+|++|.+++-.+... .-....++++|+.||+|+.+++ .+ ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 577888888754331 122233 4678888888887766532 2344567788888888888776 22 4577777777
Q ss_pred EEEccCCCCCCccccCCCCCCCCccEEEcCCCCC
Q 045580 149 VFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL 182 (764)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 182 (764)
+|.+.+-.+...........+++|+.||++....
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 7776654432222212223344455555554443
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=1.9e-06 Score=87.50 Aligned_cols=133 Identities=19% Similarity=0.095 Sum_probs=75.4
Q ss_pred CCCCCCEEeCcCCccCCC-c-cccccCCCCCCEEECcCCCC-CCCCCCcc--cCCCccEEeccCCcccc--ccchhhcCC
Q 045580 359 KATSLLELDLSNNMLYGQ-I-PHWFGNLSGLQFLDISENQL-SGSVPSSF--NLSSLRRLYMHMNAFNG--SIPGALRRS 431 (764)
Q Consensus 359 ~l~~L~~L~L~~n~l~~~-~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~--~~~~L~~L~l~~n~l~~--~~~~~~~~~ 431 (764)
.+..|+.++.+++.-.+. . -..-.+.++|+.|-++.++- +..-...+ +++.|+.+++..+.... .+...-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 355666776666533211 1 11123456777777777663 21111122 56777777777764321 122223567
Q ss_pred CCCCEEEccCCcCCCcc-----hhhhhcCCCccEEEccCCcCC-ccCCccccCCCCCCEEeCCCCc
Q 045580 432 SSLTVLDLRDNQFSGSI-----PIWINEFSYLGILLLRGNQLK-GNIPNQLCHLSLLNILDLSYNK 491 (764)
Q Consensus 432 ~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~ 491 (764)
+.|+.+.++++...... ...-..+..|..+.|+++..+ ...-+.+..+++|+.+++-+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88888888877543111 112234567888888888654 3334556777888888887764
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.65 E-value=4.3e-06 Score=84.94 Aligned_cols=277 Identities=20% Similarity=0.141 Sum_probs=144.7
Q ss_pred CCCcEEECcCCccccc--CchhhcCCCCCCEEECCCCC-CCCcchh-hhhCCCCCCEEECcCCC-CCCCCChhhhccCCC
Q 045580 72 KKLVELDLSKNNLYGH--LSPCLSNLTHIKVLDLSSNQ-LTGNLQS-VIANIKSLEYLSLDDNN-FEGSFSFNSLKNHSK 146 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~ 146 (764)
..|+.|.+.++.=.+- +-..-.+++++++|++.++. ++...-. .-..+++|++|++..|. ++...-......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4677777877654322 22344677888888888775 3322222 22457888888888753 331111123346788
Q ss_pred CcEEEccCCCCCCccccC-CCCCCCCccEEEcCCCCCCC---ccHhhhCCCCccEEEccCCC-CCCccchHHhhcCCCCC
Q 045580 147 LQVFKLSNSLVKIETEEF-PGLPEYQLKALNLRNCSLHA---LPSFLLHQLDLRFIDLSHNK-LQGTFPSWLLQNNTKLD 221 (764)
Q Consensus 147 L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~---lp~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~ 221 (764)
|++++++.+..--....- -.-.+..++.+.+.+|.-.. +-..-..+..+..+++..+. ++..---.+...+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888866531111000 00112235555555543211 11222333445555554543 22111111222456677
Q ss_pred EEEccCCcCccCC---CCCCCCCCccEEEccCCC-CCCCCChhHhhcCCCCcEEEcccCCCCc--cCCccccCCCCCCEE
Q 045580 222 TLYLLNNSLSGNF---QLPSSKHDLLRIDISHNK-FSGQLPGNMGKILPELLSLNLSENGFEV--RIPSSMSEMKRLESL 295 (764)
Q Consensus 222 ~L~L~~n~l~~~~---~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L 295 (764)
.|+.+++.-.+.. .+..+.++|+.+.++.|+ ++..--..++.+.+.|+.+++..+.... .+...-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 7777666443211 122366777777777774 3333333444556777777777765431 122223456777887
Q ss_pred ECCCCcccccCc----hhhhhCCCCCCEEEeeccccccee---ecCCCCCCceEEccccc
Q 045580 296 DLSSNNFSGELP----RQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNH 348 (764)
Q Consensus 296 ~Ls~n~l~~~~p----~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~L~~n~ 348 (764)
.++++....... .....++..|+.+.++++...... .+..+++|+.+++..+.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 777765431110 011124556777777777665433 55667778887777665
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=1.5e-05 Score=90.55 Aligned_cols=157 Identities=14% Similarity=0.135 Sum_probs=79.1
Q ss_pred CCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCc-------------chhhh--hCCCCCCEEECcCCCCCC-
Q 045580 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN-------------LQSVI--ANIKSLEYLSLDDNNFEG- 134 (764)
Q Consensus 71 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------------~~~~~--~~l~~L~~L~Ls~n~l~~- 134 (764)
.-+++..++.+.......-..+.+.. |+.|.|.+-..... +...+ ..-.+|++||+++...-.
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 34566666666555544444444444 66666665432210 00111 112577888887754321
Q ss_pred CCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCC-ccchHH
Q 045580 135 SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQG-TFPSWL 213 (764)
Q Consensus 135 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~-~~~~~~ 213 (764)
..+...-..+|.|+.|.+.+..+..+.-..-..+.++|..||+++++++.+ .+++++++|++|.+.+=.+.. ..-..+
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 112122234677777777665543222000111334566666666666665 556666666666666655542 112234
Q ss_pred hhcCCCCCEEEccCCcC
Q 045580 214 LQNNTKLDTLYLLNNSL 230 (764)
Q Consensus 214 ~~~l~~L~~L~L~~n~l 230 (764)
| ++++|+.||+|....
T Consensus 217 F-~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 217 F-NLKKLRVLDISRDKN 232 (699)
T ss_pred h-cccCCCeeecccccc
Confidence 4 566666666665544
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=8.1e-05 Score=68.54 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=43.4
Q ss_pred ccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcc
Q 045580 195 LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274 (764)
Q Consensus 195 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~ 274 (764)
=+.++|.+.++. .+.. +.....+...++|++|.+.... ....++.|..|.+.+|+|+ .+...+...+++|..|.|.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 456677776654 2211 2223445666777777665331 2234555556666666665 4444454445555666665
Q ss_pred cCCCC
Q 045580 275 ENGFE 279 (764)
Q Consensus 275 ~n~~~ 279 (764)
+|++.
T Consensus 97 nNsi~ 101 (233)
T KOG1644|consen 97 NNSIQ 101 (233)
T ss_pred Ccchh
Confidence 55543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00048 Score=72.22 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=30.0
Q ss_pred cCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccC
Q 045580 216 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSEN 276 (764)
Q Consensus 216 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 276 (764)
.+.+++.|++++|.++..+ .-..+|+.|.+++|.-...+|..+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 3567777777777666443 222346666666643222445433 235566666655
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.11 E-value=0.00097 Score=59.43 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=43.3
Q ss_pred HhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce--eecCCCCC
Q 045580 261 MGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE--VVFPNSTN 338 (764)
Q Consensus 261 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~ 338 (764)
.+...++|+.+.+.. .+.......|..+++|+.+.+.++ +. .++...+..+++++.+.+.+ .+... ..+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 333345566666553 344344455566666666666553 33 45555555555566655543 22211 13444555
Q ss_pred CceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCC
Q 045580 339 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGL 387 (764)
Q Consensus 339 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 387 (764)
|+.+.+..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555443 332333344444 555555543 2222333344444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.06 E-value=0.0014 Score=58.40 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=33.8
Q ss_pred cccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCC
Q 045580 67 GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSK 146 (764)
Q Consensus 67 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 146 (764)
.|.+.++|+.+.+.. .+..+...+|..+++|+.+++.++ +......+|.++++|+.+.+.. .+. .++...|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 345555666666553 344444455555555666665553 4434444555555555555543 221 223333444444
Q ss_pred CcEEEcc
Q 045580 147 LQVFKLS 153 (764)
Q Consensus 147 L~~L~l~ 153 (764)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00083 Score=64.86 Aligned_cols=87 Identities=24% Similarity=0.330 Sum_probs=55.4
Q ss_pred ccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCC--CCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCC
Q 045580 68 ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN--QLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHS 145 (764)
Q Consensus 68 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 145 (764)
.-.+..|+.|++.+..++.. ..|..+++|+.|.+|.| ++.+.++-....+++|++|++++|++.-.-....++.+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 34556777777777666643 34667888888888888 555555555666788888888888876211112244455
Q ss_pred CCcEEEccCCC
Q 045580 146 KLQVFKLSNSL 156 (764)
Q Consensus 146 ~L~~L~l~~~~ 156 (764)
+|..|++.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 55555555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0029 Score=61.21 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=40.3
Q ss_pred CchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCC--CCCCCCChhhhccCCCCcEEEccCCCCCC
Q 045580 88 LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN--NFEGSFSFNSLKNHSKLQVFKLSNSLVKI 159 (764)
Q Consensus 88 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l~~L~~L~l~~~~~~~ 159 (764)
+......+..|+.|++.+..++.. ..|-.+++|+.|.++.| ++.+.++.. ..++++|++++++.|.+++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc
Confidence 444455566677777777766632 23556777888888888 444444321 2344666666666665543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.00025 Score=68.47 Aligned_cols=86 Identities=24% Similarity=0.181 Sum_probs=43.3
Q ss_pred CCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc-cccccCCCCCCEEECc
Q 045580 315 FSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI-PHWFGNLSGLQFLDIS 393 (764)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 393 (764)
.+.+.|+..++.+.+......++.|+.|.|+-|+|+..- .+..|++|++|.|..|.|.... -..+.++++|+.|-|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344455555555554444445555555555555555332 2445555555555555554211 1234555666666666
Q ss_pred CCCCCCCCC
Q 045580 394 ENQLSGSVP 402 (764)
Q Consensus 394 ~n~l~~~~~ 402 (764)
.|.-.|.-+
T Consensus 97 ENPCc~~ag 105 (388)
T KOG2123|consen 97 ENPCCGEAG 105 (388)
T ss_pred cCCcccccc
Confidence 655544433
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.03 E-value=0.0012 Score=73.98 Aligned_cols=61 Identities=31% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCCCcEEEcccCC-CCccCCccccC-CCCCCEEECCCCc-ccccCchhhhhCCCCCCEEEeecc
Q 045580 265 LPELLSLNLSENG-FEVRIPSSMSE-MKRLESLDLSSNN-FSGELPRQFLSGCFSLSFLSLSDN 325 (764)
Q Consensus 265 l~~L~~L~L~~n~-~~~~~~~~l~~-l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~l~~n 325 (764)
+++|+.|+++.+. ++...-..++. +++|+.|.+.++. +++.--..+...++.|+.|+++.+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4455555555544 32222222221 4455555544443 232222222334444555555544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0036 Score=35.97 Aligned_cols=18 Identities=50% Similarity=0.813 Sum_probs=8.2
Q ss_pred CCEEECcCCcCcccCcccc
Q 045580 620 IESLDLSHNDLSGQIPPQL 638 (764)
Q Consensus 620 L~~LdLs~N~l~~~ip~~l 638 (764)
|++|||++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344433
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.001 Score=64.46 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEE
Q 045580 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVF 150 (764)
Q Consensus 71 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 150 (764)
+.+.+.|++.+|.++++ ....+++.|++|.||-|.|+..-| |..|++|++|+|..|.|...-....+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677788888888865 345788888888888888886544 77888888888888888743334456777888877
Q ss_pred EccCCCC
Q 045580 151 KLSNSLV 157 (764)
Q Consensus 151 ~l~~~~~ 157 (764)
-|..|..
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 7776654
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.41 E-value=0.0074 Score=67.53 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=29.9
Q ss_pred CCccEEEcCCCC-CCCc--cHhhhCCCCccEEEccCCC-CCCccchHHhhcCCCCCEEEccCCcC
Q 045580 170 YQLKALNLRNCS-LHAL--PSFLLHQLDLRFIDLSHNK-LQGTFPSWLLQNNTKLDTLYLLNNSL 230 (764)
Q Consensus 170 ~~L~~L~L~~n~-l~~l--p~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 230 (764)
.+|+.|+++.+. ++.. ......+++|+.|.+.++. ++...-..+...++.|++|+++++..
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 345555555555 3221 1112225566666655554 44333344444556666666665543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.0067 Score=34.87 Aligned_cols=19 Identities=53% Similarity=0.677 Sum_probs=8.8
Q ss_pred cceecccccccccccCcccc
Q 045580 596 IRALNLSHNFLSGSIPQSLS 615 (764)
Q Consensus 596 L~~L~Ls~N~l~~~~p~~l~ 615 (764)
|+.|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444555555444 4444443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.82 E-value=0.0066 Score=57.42 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=72.5
Q ss_pred cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648 (764)
Q Consensus 569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 648 (764)
+...+.||++.|++- ..-..++-++.|..|++|.|++. ..|..++.+..+..+++.+|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 346788999999987 45667888889999999999988 78999999999999999999988 6789999999999999
Q ss_pred ccCCccc
Q 045580 649 VSYNHLS 655 (764)
Q Consensus 649 ls~N~l~ 655 (764)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.02 E-value=0.0023 Score=69.88 Aligned_cols=36 Identities=36% Similarity=0.511 Sum_probs=19.4
Q ss_pred CcEEEcccCCCCccCC----ccccCCCCCCEEECCCCccc
Q 045580 268 LLSLNLSENGFEVRIP----SSMSEMKRLESLDLSSNNFS 303 (764)
Q Consensus 268 L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~Ls~n~l~ 303 (764)
+..|.|.+|.+..... ..+...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5566666666654322 23344455556666666554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.39 E-value=0.0028 Score=69.19 Aligned_cols=184 Identities=26% Similarity=0.235 Sum_probs=93.7
Q ss_pred CCCEEECCCCcccccCchhh---hhCCCCCCEEEeeccccccee------ecCCC-CCCceEEcccccCCCc----cccc
Q 045580 291 RLESLDLSSNNFSGELPRQF---LSGCFSLSFLSLSDNHLQGEV------VFPNS-TNLCWLYLNNNHFSGK----IQDG 356 (764)
Q Consensus 291 ~L~~L~Ls~n~l~~~~p~~~---~~~l~~L~~L~l~~n~l~~~~------~~~~~-~~L~~L~L~~n~l~~~----~~~~ 356 (764)
.+..+.+.+|.+.......+ +...+.|+.|+++.|.+.+.. .+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 47788888888774433222 345667788888888777433 22222 4566677776666543 2334
Q ss_pred ccCCCCCCEEeCcCCccCC----Ccccccc----CCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhh
Q 045580 357 LSKATSLLELDLSNNMLYG----QIPHWFG----NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGAL 428 (764)
Q Consensus 357 l~~l~~L~~L~L~~n~l~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 428 (764)
+.....++.++++.|.+.. .++..+. ...++++|++++|.++...... ....+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~-------------------l~~~l 228 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL-------------------LDEVL 228 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH-------------------HHHHH
Confidence 4456667777777776531 1111222 2344555555555544211110 11122
Q ss_pred cCCCC-CCEEEccCCcCCCcc----hhhhhcC-CCccEEEccCCcCCccC----CccccCCCCCCEEeCCCCcCc
Q 045580 429 RRSSS-LTVLDLRDNQFSGSI----PIWINEF-SYLGILLLRGNQLKGNI----PNQLCHLSLLNILDLSYNKFN 493 (764)
Q Consensus 429 ~~~~~-L~~L~L~~n~l~~~~----p~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 493 (764)
...+. +..+++..|++.+.. ...+... ..+++++++.|.++..- ...+..++.++++.++.|.+.
T Consensus 229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22333 444555555554321 1222233 45566666666665432 233444556666666666654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.84 E-value=0.17 Score=26.89 Aligned_cols=14 Identities=43% Similarity=0.664 Sum_probs=5.4
Q ss_pred ccEEEcCCCCCCCc
Q 045580 172 LKALNLRNCSLHAL 185 (764)
Q Consensus 172 L~~L~L~~n~l~~l 185 (764)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44555555554444
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.63 E-value=0.36 Score=28.89 Aligned_cols=16 Identities=50% Similarity=0.667 Sum_probs=10.1
Q ss_pred CCCCCEEECcCCcCcc
Q 045580 617 LKMIESLDLSHNDLSG 632 (764)
Q Consensus 617 l~~L~~LdLs~N~l~~ 632 (764)
+++|+.|+|++|+|+.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3556666777776663
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.63 E-value=0.36 Score=28.89 Aligned_cols=16 Identities=50% Similarity=0.667 Sum_probs=10.1
Q ss_pred CCCCCEEECcCCcCcc
Q 045580 617 LKMIESLDLSHNDLSG 632 (764)
Q Consensus 617 l~~L~~LdLs~N~l~~ 632 (764)
+++|+.|+|++|+|+.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3556666777776663
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.43 E-value=0.47 Score=28.36 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=7.3
Q ss_pred CCCCEEECCCCCCCC
Q 045580 96 THIKVLDLSSNQLTG 110 (764)
Q Consensus 96 ~~L~~L~Ls~n~l~~ 110 (764)
++|++|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.43 E-value=0.47 Score=28.36 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=7.3
Q ss_pred CCCCEEECCCCCCCC
Q 045580 96 THIKVLDLSSNQLTG 110 (764)
Q Consensus 96 ~~L~~L~Ls~n~l~~ 110 (764)
++|++|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.05 E-value=0.021 Score=54.10 Aligned_cols=87 Identities=26% Similarity=0.260 Sum_probs=69.0
Q ss_pred ccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCC
Q 045580 66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHS 145 (764)
Q Consensus 66 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 145 (764)
..+..++..+.||++.|.+. .+-.-|+.++.|..||++.|++. ..|..++.+..++.+++..|..+ ..| .+++..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p-~s~~k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP-KSQKKEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC-ccccccC
Confidence 35677889999999999877 34456788889999999999987 67888999999999999999887 555 3477777
Q ss_pred CCcEEEccCCC
Q 045580 146 KLQVFKLSNSL 156 (764)
Q Consensus 146 ~L~~L~l~~~~ 156 (764)
+++++++..+.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 77777766554
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.80 E-value=0.22 Score=29.15 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=4.9
Q ss_pred CCCEEECCCCCCC
Q 045580 97 HIKVLDLSSNQLT 109 (764)
Q Consensus 97 ~L~~L~Ls~n~l~ 109 (764)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.39 E-value=0.43 Score=44.72 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=53.7
Q ss_pred CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCC-cchhhhh-CCCCCCEEECcCCC-CCCCCChhhhccCCCCc
Q 045580 72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIA-NIKSLEYLSLDDNN-FEGSFSFNSLKNHSKLQ 148 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~ 148 (764)
..++.+|-++..|..+--+.+..++.++.|.+.+|.--+ .--+-++ -.++|+.|++++|. |+ .-....+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 356788888888877666677788888888888874321 1112222 24788999999885 43 33344566777777
Q ss_pred EEEccC
Q 045580 149 VFKLSN 154 (764)
Q Consensus 149 ~L~l~~ 154 (764)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 776653
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.23 E-value=0.49 Score=44.34 Aligned_cols=81 Identities=17% Similarity=0.046 Sum_probs=45.3
Q ss_pred CccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcc-hhhh-hcCCCccEEEccCC-cCCccCCccccCCCCCCEE
Q 045580 409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI-PIWI-NEFSYLGILLLRGN-QLKGNIPNQLCHLSLLNIL 485 (764)
Q Consensus 409 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 485 (764)
.++.++-++..+..+--..+.++++++.|.+.+|+--+.. -..+ +-.++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666655554455666666666666666432211 1111 12367777777766 3554445556666777777
Q ss_pred eCCC
Q 045580 486 DLSY 489 (764)
Q Consensus 486 ~Ls~ 489 (764)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6644
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.69 E-value=2.8 Score=25.16 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=10.7
Q ss_pred CCCCCEEECcCCcCc
Q 045580 617 LKMIESLDLSHNDLS 631 (764)
Q Consensus 617 l~~L~~LdLs~N~l~ 631 (764)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.39 E-value=3.5 Score=24.66 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=7.9
Q ss_pred CCCEEECcCCcCc
Q 045580 619 MIESLDLSHNDLS 631 (764)
Q Consensus 619 ~L~~LdLs~N~l~ 631 (764)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4556666666665
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.50 E-value=52 Score=35.50 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=36.0
Q ss_pred CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhh---hCCCCCCEEECcCCCCCCCCC
Q 045580 72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVI---ANIKSLEYLSLDDNNFEGSFS 137 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~ 137 (764)
+.++++|++.|.+....|-.+..=.. -++++.|+++...-+.+ ..=..+.+++++.|.....+|
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIP 231 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccch
Confidence 45677888888777665544321111 16666666653222111 111357788888887766665
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.20 E-value=4.2 Score=44.27 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=45.4
Q ss_pred CCCCccEEEccCCCCCCccc--hHHhhcCCCCCEEEccCC--cCccCCCCCC-CCCCccEEEccCCCCCCCCCh------
Q 045580 191 HQLDLRFIDLSHNKLQGTFP--SWLLQNNTKLDTLYLLNN--SLSGNFQLPS-SKHDLLRIDISHNKFSGQLPG------ 259 (764)
Q Consensus 191 ~~~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n--~l~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~------ 259 (764)
+.+.+..+.|++|++. .+. ..+.+..++|+.|+|++| .+.....+.. ....|++|.+.+|.++...-.
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3455666666666654 221 123445667777777777 3332222221 445677788888877644322
Q ss_pred hHhhcCCCCcEEE
Q 045580 260 NMGKILPELLSLN 272 (764)
Q Consensus 260 ~~~~~l~~L~~L~ 272 (764)
.+-..+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 2233578888776
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.05 E-value=6.5 Score=23.97 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=7.1
Q ss_pred CCCEEECCCCCCC
Q 045580 97 HIKVLDLSSNQLT 109 (764)
Q Consensus 97 ~L~~L~Ls~n~l~ 109 (764)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.83 E-value=5.1 Score=52.22 Aligned_cols=37 Identities=24% Similarity=0.155 Sum_probs=17.9
Q ss_pred ECcCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 045580 624 DLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN 660 (764)
Q Consensus 624 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~ 660 (764)
||++|+|+...+..|..+++|+.|+|++|++.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 3444555444444444455555555555555554443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.53 E-value=7.9 Score=42.24 Aligned_cols=82 Identities=27% Similarity=0.228 Sum_probs=52.3
Q ss_pred HhhcCCCCCEEEccCCcCccCC---CCCCCCCCccEEEccCC--CCCCCCChhHhh-cCCCCcEEEcccCCCCccCCc--
Q 045580 213 LLQNNTKLDTLYLLNNSLSGNF---QLPSSKHDLLRIDISHN--KFSGQLPGNMGK-ILPELLSLNLSENGFEVRIPS-- 284 (764)
Q Consensus 213 ~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~L~~L~ls~n--~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~-- 284 (764)
.-.+.+.+..+.|++|++...- .+....++|+.|+|++| .+. . ..++.+ ....|++|-+.+|.+......
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 3446788899999999876432 23347889999999999 443 1 112211 245789999999988643211
Q ss_pred -----cccCCCCCCEEE
Q 045580 285 -----SMSEMKRLESLD 296 (764)
Q Consensus 285 -----~l~~l~~L~~L~ 296 (764)
.-..+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 112456776654
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=39.58 E-value=1.4e+02 Score=32.30 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=10.2
Q ss_pred CCCCCEEEccCCcCcc
Q 045580 217 NTKLDTLYLLNNSLSG 232 (764)
Q Consensus 217 l~~L~~L~L~~n~l~~ 232 (764)
-+.+++++++.|.+..
T Consensus 164 npr~r~~dls~npi~d 179 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGD 179 (553)
T ss_pred cchhhhhccCCCcccc
Confidence 3456677777776653
No 93
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=33.77 E-value=60 Score=20.27 Aligned_cols=20 Identities=30% Similarity=0.761 Sum_probs=17.1
Q ss_pred HHHHHHhhceeeeEeeeecc
Q 045580 743 FYFIDAYIDLCYYWFYKYVF 762 (764)
Q Consensus 743 ~~~~d~~~~~~~~~~~~~~~ 762 (764)
.-.+|.+-..+|+.|+.|.+
T Consensus 17 rilidnfsnfc~ynfi~~f~ 36 (37)
T PF08199_consen 17 RILIDNFSNFCHYNFIGYFY 36 (37)
T ss_pred HHhhhccccceeeeeeeeee
Confidence 45789999999999999875
No 94
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=32.92 E-value=32 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=14.1
Q ss_pred CCCcccccCC--ccccCCCCccee
Q 045580 40 KGSITDFSVE--DSCRKTSGVPLT 61 (764)
Q Consensus 40 ~~~~~~~~~~--~~~~~~~~~~~~ 61 (764)
.+.+.+|... ..||.|.||.|.
T Consensus 20 ~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 20 SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcccccCCCcCCCCCeeeccEEeC
Confidence 4667899876 689999999873
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.00 E-value=46 Score=19.64 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.5
Q ss_pred CCCCEEECCCC
Q 045580 96 THIKVLDLSSN 106 (764)
Q Consensus 96 ~~L~~L~Ls~n 106 (764)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.68 E-value=49 Score=43.93 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=26.8
Q ss_pred EcccCcccccCCccccCccccceecccccccc
Q 045580 576 DFSCNELTGDIPSEIGSLSEIRALNLSHNFLS 607 (764)
Q Consensus 576 dLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 607 (764)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899998666677888889999999999876
No 97
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.59 E-value=71 Score=25.87 Aligned_cols=29 Identities=3% Similarity=0.002 Sum_probs=18.0
Q ss_pred hheeeheeehhhhhhhhHHHHHhhhhhhh
Q 045580 711 VAFYWSFVASSVTVILGLFAILWVNSYWR 739 (764)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (764)
.|.|+..+.|++++++++.++++.+.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 56666667677666666555555555554
Done!