Query 045580
Match_columns 764
No_of_seqs 800 out of 5854
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 05:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-75 1.5E-79 684.2 45.9 640 42-691 29-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.8E-63 9.4E-68 583.9 38.0 596 71-677 49-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-55 4.3E-60 514.3 46.8 562 59-660 36-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.7E-55 3E-59 507.3 48.3 532 57-635 58-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-55 2.2E-59 518.1 42.3 539 71-690 23-591 (844)
6 3t6q_A CD180 antigen; protein- 100.0 2.6E-54 9E-59 496.5 43.8 520 64-661 27-566 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-53 6.3E-58 489.5 38.4 517 64-662 26-565 (606)
8 3t6q_A CD180 antigen; protein- 100.0 7.4E-52 2.5E-56 476.1 40.7 527 75-681 15-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-51 2.2E-55 483.8 41.5 523 75-683 7-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-50 6.2E-55 464.5 37.6 527 74-683 13-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 4.2E-48 1.4E-52 441.7 37.3 498 72-664 28-540 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-47 1.2E-51 431.9 35.6 478 64-661 20-516 (549)
13 4eco_A Uncharacterized protein 100.0 4.9E-49 1.7E-53 452.1 19.3 493 41-656 55-601 (636)
14 2z63_A TOLL-like receptor 4, v 100.0 4.8E-46 1.6E-50 424.8 38.0 503 74-681 9-534 (570)
15 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-44 4.3E-49 418.7 39.5 513 72-661 52-586 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-46 2.2E-50 418.4 27.3 458 75-661 3-487 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 9.9E-46 3.4E-50 430.8 28.0 471 56-657 315-842 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-45 2.2E-49 413.3 33.5 475 77-682 10-514 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-44 7.3E-49 405.9 27.9 443 64-635 15-485 (520)
20 4eco_A Uncharacterized protein 100.0 1.3E-45 4.5E-50 423.6 16.6 470 96-680 81-602 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-42 3.9E-47 395.0 26.6 461 73-663 32-518 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 1.4E-42 4.7E-47 404.4 27.2 357 251-679 435-841 (876)
23 4g8a_A TOLL-like receptor 4; l 100.0 8.7E-41 3E-45 386.5 38.7 525 76-681 35-583 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.2E-41 2.1E-45 380.8 24.7 442 64-635 46-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 2.6E-41 8.7E-46 370.9 19.2 321 70-493 9-330 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 3E-39 1E-43 357.6 29.0 374 220-664 12-417 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 3.7E-38 1.3E-42 348.9 27.7 378 174-635 14-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 3.9E-38 1.3E-42 345.6 24.7 378 169-661 10-417 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 7.5E-37 2.6E-41 340.3 25.7 346 244-682 14-360 (477)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5.2E-36 1.8E-40 329.1 29.4 289 265-661 105-393 (457)
31 1o6v_A Internalin A; bacterial 100.0 3.9E-35 1.3E-39 324.9 36.1 344 219-657 47-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-35 5.8E-40 324.9 31.4 368 83-640 29-396 (457)
33 1o6v_A Internalin A; bacterial 100.0 6.8E-35 2.3E-39 323.0 36.1 343 171-632 47-389 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 6.2E-35 2.1E-39 305.0 17.6 258 361-687 50-312 (313)
35 3o6n_A APL1; leucine-rich repe 100.0 1.1E-33 3.8E-38 305.9 26.4 334 240-681 44-377 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 2.2E-33 7.7E-38 312.2 28.1 328 241-660 32-361 (477)
37 3oja_B Anopheles plasmodium-re 100.0 1.8E-33 6E-38 321.1 26.4 335 240-682 50-384 (597)
38 4fmz_A Internalin; leucine ric 100.0 2.2E-32 7.5E-37 291.0 30.7 304 265-655 43-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 1.1E-31 3.8E-36 285.6 30.6 282 265-631 65-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 9.3E-32 3.2E-36 290.8 27.1 310 70-470 43-353 (390)
41 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-33 1.5E-37 291.0 15.3 251 337-656 50-306 (313)
42 3oja_B Anopheles plasmodium-re 100.0 4.1E-31 1.4E-35 301.6 26.3 308 289-680 50-360 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 5.9E-34 2E-38 315.7 -0.8 359 171-633 4-413 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-33 4.2E-38 313.1 1.5 357 240-657 2-413 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-30 1.6E-34 270.9 24.2 285 291-653 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 8.4E-30 2.9E-34 268.8 26.0 247 334-653 73-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-29 6.5E-34 266.3 25.2 249 242-500 34-284 (332)
48 1xku_A Decorin; proteoglycan, 100.0 4.3E-29 1.5E-33 263.4 27.6 250 242-500 32-283 (330)
49 3ogk_B Coronatine-insensitive 100.0 5.1E-31 1.8E-35 301.8 3.1 439 27-470 14-527 (592)
50 2z80_A TOLL-like receptor 2, v 100.0 1E-28 3.4E-33 263.1 15.4 278 289-661 30-320 (353)
51 2z66_A Variable lymphocyte rec 100.0 5.1E-28 1.8E-32 252.3 19.8 252 340-661 10-267 (306)
52 3zyi_A Leucine-rich repeat-con 100.0 5.3E-27 1.8E-31 258.5 24.2 251 340-661 57-309 (452)
53 4fcg_A Uncharacterized protein 100.0 2E-27 6.8E-32 249.5 19.4 224 361-655 81-314 (328)
54 3ogk_B Coronatine-insensitive 100.0 1.5E-29 5E-34 289.8 3.4 243 137-393 65-326 (592)
55 3zyj_A Leucine-rich repeat-con 99.9 7.1E-27 2.4E-31 256.5 23.6 251 340-661 46-298 (440)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-27 5.6E-32 245.7 16.8 229 364-661 14-244 (285)
57 4fcg_A Uncharacterized protein 99.9 4.8E-27 1.6E-31 246.6 19.2 233 315-631 81-314 (328)
58 2z66_A Variable lymphocyte rec 99.9 1.3E-26 4.5E-31 241.6 21.8 247 244-495 10-263 (306)
59 1ozn_A Reticulon 4 receptor; N 99.9 4E-27 1.4E-31 242.8 16.8 252 340-661 14-267 (285)
60 2z80_A TOLL-like receptor 2, v 99.9 1.4E-26 4.7E-31 246.6 18.3 253 242-497 53-318 (353)
61 1wwl_A Monocyte differentiatio 99.9 4.8E-28 1.7E-32 252.8 5.1 249 335-656 41-310 (312)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-28 2E-32 252.9 5.6 247 335-660 32-281 (317)
63 2p1m_B Transport inhibitor res 99.9 1.8E-29 6.2E-34 289.1 -7.6 490 26-654 6-543 (594)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-25 6.4E-30 252.1 25.0 268 267-642 41-308 (622)
65 3zyj_A Leucine-rich repeat-con 99.9 3E-25 1E-29 243.6 23.8 246 243-494 45-293 (440)
66 3zyi_A Leucine-rich repeat-con 99.9 3E-25 1E-29 244.5 23.8 247 243-495 56-305 (452)
67 3g06_A SSPH2 (leucine-rich rep 99.9 7E-25 2.4E-29 247.5 27.2 264 290-661 40-303 (622)
68 3oja_A Leucine-rich immune mol 99.9 1E-26 3.6E-31 257.4 11.0 236 336-650 33-270 (487)
69 2p1m_B Transport inhibitor res 99.9 2.7E-28 9.4E-33 279.3 -1.8 375 216-656 103-520 (594)
70 1wwl_A Monocyte differentiatio 99.9 1.9E-26 6.6E-31 240.7 9.8 250 286-632 39-310 (312)
71 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-26 7.5E-31 240.8 9.3 237 243-493 12-250 (317)
72 2z62_A TOLL-like receptor 4, v 99.9 1.4E-24 4.6E-29 222.7 20.7 210 386-662 29-244 (276)
73 3oja_A Leucine-rich immune mol 99.9 4.6E-26 1.6E-30 252.3 9.0 220 359-656 32-251 (487)
74 2o6q_A Variable lymphocyte rec 99.9 3.1E-23 1.1E-27 211.6 22.4 207 387-661 18-224 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 2.1E-23 7.1E-28 213.8 20.8 226 343-635 13-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 5.6E-23 1.9E-27 211.4 20.8 207 381-659 6-212 (290)
77 3rfs_A Internalin B, repeat mo 99.9 2.9E-23 9.9E-28 212.0 16.3 87 408-494 109-195 (272)
78 3rfs_A Internalin B, repeat mo 99.9 7E-23 2.4E-27 209.1 17.2 210 358-643 38-247 (272)
79 2o6q_A Variable lymphocyte rec 99.9 6.7E-22 2.3E-26 201.7 22.5 203 363-634 18-221 (270)
80 3goz_A Leucine-rich repeat-con 99.9 7E-24 2.4E-28 226.2 6.3 254 342-657 3-299 (362)
81 1p9a_G Platelet glycoprotein I 99.9 8.6E-22 2.9E-26 202.6 19.8 204 406-681 8-211 (290)
82 2ca6_A RAN GTPase-activating p 99.9 3.5E-24 1.2E-28 230.9 2.0 240 354-659 25-320 (386)
83 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.4E-26 196.6 19.0 184 409-661 15-198 (251)
84 2ast_B S-phase kinase-associat 99.9 5.1E-23 1.7E-27 217.6 7.5 250 338-661 48-312 (336)
85 4glp_A Monocyte differentiatio 99.9 2.7E-22 9.3E-27 209.1 12.7 204 385-656 91-308 (310)
86 3goz_A Leucine-rich repeat-con 99.9 7.4E-23 2.5E-27 218.3 8.3 42 571-612 254-302 (362)
87 2ca6_A RAN GTPase-activating p 99.9 1.9E-23 6.5E-28 225.2 2.6 247 305-635 23-320 (386)
88 4glp_A Monocyte differentiatio 99.9 1.2E-21 4E-26 204.3 13.3 157 407-632 144-308 (310)
89 2xwt_C Thyrotropin receptor; s 99.9 5.2E-21 1.8E-25 191.3 15.2 78 571-652 156-236 (239)
90 1h6u_A Internalin H; cell adhe 99.8 9.8E-21 3.4E-25 196.7 17.6 192 384-656 40-231 (308)
91 2ast_B S-phase kinase-associat 99.8 1E-21 3.6E-26 207.5 9.7 195 292-490 49-257 (336)
92 2xwt_C Thyrotropin receptor; s 99.8 5.9E-21 2E-25 190.9 14.5 197 361-629 31-237 (239)
93 3m19_A Variable lymphocyte rec 99.8 2.4E-20 8.3E-25 187.8 19.0 180 386-633 15-194 (251)
94 1h6u_A Internalin H; cell adhe 99.8 1.9E-20 6.6E-25 194.5 18.6 161 323-494 27-187 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.9E-19 6.6E-24 190.7 18.3 239 244-490 12-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 173.9 17.2 131 361-491 28-159 (208)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 3.6E-20 1.2E-24 182.2 9.6 158 435-661 14-172 (220)
98 4ay9_X Follicle-stimulating ho 99.8 3.8E-19 1.3E-23 188.4 17.6 239 340-653 12-257 (350)
99 3cvr_A Invasion plasmid antige 99.8 2.4E-19 8.1E-24 199.8 16.6 134 338-493 60-193 (571)
100 3cvr_A Invasion plasmid antige 99.8 2.9E-19 1E-23 199.0 16.9 189 362-643 60-255 (571)
101 2o6s_A Variable lymphocyte rec 99.8 7.5E-19 2.5E-23 171.5 17.5 128 364-494 10-138 (208)
102 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.6E-24 178.9 10.0 158 435-661 14-171 (220)
103 3e6j_A Variable lymphocyte rec 99.8 2.4E-18 8.2E-23 170.3 15.4 158 434-661 21-178 (229)
104 2xot_A Amphoterin-induced prot 99.8 8.2E-19 2.8E-23 186.7 12.5 180 411-659 21-206 (361)
105 1h6t_A Internalin B; cell adhe 99.8 7.8E-18 2.7E-22 173.2 16.6 170 407-656 45-214 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-17 3.7E-22 164.4 14.5 156 411-635 14-170 (220)
107 1w8a_A SLIT protein; signaling 99.7 2.9E-18 9.8E-23 164.7 9.0 114 569-682 53-166 (192)
108 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 8.8E-22 169.3 15.6 189 268-494 26-214 (291)
109 1m9s_A Internalin B; cell inva 99.7 5.7E-17 1.9E-21 182.8 19.2 189 292-494 23-211 (605)
110 1m9s_A Internalin B; cell inva 99.7 2.7E-17 9.4E-22 185.4 16.3 193 267-473 22-214 (605)
111 4ezg_A Putative uncharacterize 99.7 1.8E-17 6.3E-22 160.0 12.1 154 429-656 41-195 (197)
112 2v9t_B SLIT homolog 2 protein 99.7 1E-16 3.4E-21 157.5 15.6 152 340-494 14-166 (220)
113 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.3E-22 167.6 10.4 171 406-657 17-187 (263)
114 1dce_A Protein (RAB geranylger 99.7 6.1E-20 2.1E-24 205.8 -9.1 86 571-659 464-550 (567)
115 2xot_A Amphoterin-induced prot 99.7 4.1E-17 1.4E-21 173.6 13.2 128 364-494 21-150 (361)
116 3e6j_A Variable lymphocyte rec 99.7 2.5E-16 8.7E-21 155.7 17.8 156 338-497 20-176 (229)
117 1w8a_A SLIT protein; signaling 99.7 3.5E-17 1.2E-21 157.1 11.0 177 435-683 11-188 (192)
118 1dce_A Protein (RAB geranylger 99.7 1.2E-18 4.1E-23 195.3 -2.7 195 382-649 346-567 (567)
119 4b8c_D Glucose-repressible alc 99.7 1.9E-17 6.4E-22 191.6 7.2 133 367-503 207-339 (727)
120 4b8c_D Glucose-repressible alc 99.7 1.7E-17 6E-22 191.9 6.7 191 392-659 208-408 (727)
121 1xeu_A Internalin C; cellular 99.7 2E-16 6.9E-21 159.9 11.6 169 315-495 19-187 (263)
122 4ezg_A Putative uncharacterize 99.7 3E-16 1E-20 151.4 12.1 152 287-444 41-193 (197)
123 2wfh_A SLIT homolog 2 protein 99.7 2E-16 6.8E-21 151.8 9.4 93 569-661 53-145 (193)
124 3sb4_A Hypothetical leucine ri 99.6 1.4E-16 4.9E-21 167.1 5.6 282 192-486 24-327 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 142.3 10.8 65 431-497 23-88 (168)
126 2o6r_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 141.1 12.7 92 570-661 52-143 (177)
127 3sb4_A Hypothetical leucine ri 99.6 2.4E-15 8.2E-20 157.8 11.5 239 71-320 48-326 (329)
128 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 9E-20 137.6 8.7 80 571-650 65-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.5 2.6E-14 8.8E-19 137.0 12.4 129 435-633 13-141 (193)
130 2ell_A Acidic leucine-rich nuc 99.5 2.5E-14 8.6E-19 134.0 12.0 131 362-493 25-160 (168)
131 2je0_A Acidic leucine-rich nuc 99.5 1.7E-14 5.8E-19 132.2 10.2 127 361-488 17-148 (149)
132 4fs7_A Uncharacterized protein 99.5 1.5E-13 5.2E-18 147.9 19.3 136 84-228 59-195 (394)
133 4fdw_A Leucine rich hypothetic 99.5 5.4E-13 1.8E-17 142.8 22.2 263 95-396 112-381 (401)
134 4fdw_A Leucine rich hypothetic 99.5 6.1E-13 2.1E-17 142.4 20.8 164 257-444 217-382 (401)
135 1ds9_A Outer arm dynein; leuci 99.5 3.2E-16 1.1E-20 151.4 -4.4 155 428-655 14-185 (198)
136 2o6r_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 128.9 14.3 132 363-497 9-141 (177)
137 4fs7_A Uncharacterized protein 99.5 1.3E-12 4.3E-17 140.6 21.0 291 62-394 61-352 (394)
138 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 129.7 10.5 92 570-661 30-121 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 8.4E-14 2.9E-18 131.5 8.9 84 571-656 65-154 (176)
140 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.4E-20 144.8 -4.0 151 409-632 19-186 (198)
141 2r9u_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 126.5 10.5 92 570-661 33-124 (174)
142 1a9n_A U2A', U2A'; complex (nu 99.4 5.7E-13 2E-17 125.7 10.2 133 357-493 15-153 (176)
143 3g39_A Variable lymphocyte rec 99.3 3.3E-12 1.1E-16 119.5 10.4 108 571-681 10-118 (170)
144 2r9u_A Variable lymphocyte rec 99.3 4.8E-12 1.7E-16 118.8 10.4 107 572-681 14-121 (174)
145 4gt6_A Cell surface protein; l 99.3 2.2E-10 7.5E-15 123.1 22.9 326 65-418 56-388 (394)
146 3un9_A NLR family member X1; l 99.3 2.4E-13 8.1E-18 144.2 -1.3 63 571-633 184-254 (372)
147 3un9_A NLR family member X1; l 99.2 5.5E-13 1.9E-17 141.4 -0.5 165 431-656 71-253 (372)
148 4gt6_A Cell surface protein; l 99.2 4.9E-10 1.7E-14 120.3 22.6 321 84-468 51-390 (394)
149 2ifg_A High affinity nerve gro 99.2 7.7E-12 2.6E-16 132.1 7.8 90 570-660 31-121 (347)
150 2ifg_A High affinity nerve gro 99.2 5.1E-11 1.7E-15 125.8 9.8 107 573-681 11-119 (347)
151 4h09_A Hypothetical leucine ri 99.0 2.2E-08 7.7E-13 106.8 22.0 308 68-405 42-352 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.3E-08 7.9E-13 106.7 20.0 316 90-434 40-358 (379)
153 2ra8_A Uncharacterized protein 98.8 3.8E-09 1.3E-13 110.8 5.9 83 569-653 251-341 (362)
154 2ra8_A Uncharacterized protein 98.8 5.4E-09 1.8E-13 109.6 6.7 88 569-656 218-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 7.8E-08 2.7E-12 90.8 2.7 61 571-631 94-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 7.8E-08 2.7E-12 90.8 2.4 86 570-655 65-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.6E-12 91.4 4.8 66 592-659 168-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 7.6E-07 2.6E-11 88.3 6.3 80 70-151 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 4.8E-06 1.6E-10 76.4 5.0 84 72-156 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.8E-05 6.2E-10 72.5 4.3 84 408-491 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.3 0.00027 9.2E-09 61.7 6.0 61 598-660 12-73 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0002 6.9E-09 66.9 2.3 41 453-493 38-83 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.001 3.5E-08 62.1 6.6 65 69-133 38-111 (197)
164 3rfe_A Platelet glycoprotein I 96.6 0.003 1E-07 55.0 5.9 57 573-631 11-68 (130)
165 2lz0_A Uncharacterized protein 53.2 11 0.00036 30.4 3.5 45 84-129 8-52 (100)
166 2lz0_A Uncharacterized protein 33.2 47 0.0016 26.5 4.3 44 350-394 9-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-75 Score=684.22 Aligned_cols=640 Identities=32% Similarity=0.462 Sum_probs=484.9
Q ss_pred CcccccCCccccCCCCccee---------------ee---cc-----------------------ccccCCCCCcEEECc
Q 045580 42 SITDFSVEDSCRKTSGVPLT---------------VF---VN-----------------------TGICELKKLVELDLS 80 (764)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~---------------~~---~~-----------------------~~~~~l~~L~~L~Ls 80 (764)
.+.+|..+..||.|.||.|. +. +| ++++++++|++|||+
T Consensus 29 ~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls 108 (768)
T 3rgz_A 29 LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLS 108 (768)
T ss_dssp SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECC
T ss_pred cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECC
Confidence 56788767778899998873 22 22 467777888888888
Q ss_pred CCcccccCch--hhcCCCCCCEEECCCCCCCCcchhhh-hCCCCCCEEECcCCCCCCCCChhh--hccCCCCcEEEccCC
Q 045580 81 KNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQSVI-ANIKSLEYLSLDDNNFEGSFSFNS--LKNHSKLQVFKLSNS 155 (764)
Q Consensus 81 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~l~~~ 155 (764)
+|.+++.+|. .++++++|++|+|++|.+++..|..+ .++++|++|++++|++++..+... +.++++|++|++++|
T Consensus 109 ~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 8888877777 78888888888888888777666654 677888888888888775554321 677888888888877
Q ss_pred CCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCC
Q 045580 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQ 235 (764)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 235 (764)
.+..... ...+++|++|++++|.+...+..+..+++|++|++++|++++.+|..+ .++++|++|++++|.+.+..+
T Consensus 189 ~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 189 KISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIP 264 (768)
T ss_dssp EEESCCB---CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCC
T ss_pred cccccCC---cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccC
Confidence 7643322 245567999999999995543338889999999999999988777765 488999999999998886543
Q ss_pred CCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCC
Q 045580 236 LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF 315 (764)
Q Consensus 236 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~ 315 (764)
.. .+++|++|++++|++++.+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+.+.+|...+..++
T Consensus 265 ~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 265 PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 33 67788888888888887888777664578888888888888778888888888888888888887777776566777
Q ss_pred CCCEEEeeccccccee--ec-------------------------CC--CCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580 316 SLSFLSLSDNHLQGEV--VF-------------------------PN--STNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366 (764)
Q Consensus 316 ~L~~L~l~~n~l~~~~--~~-------------------------~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 366 (764)
+|++|++++|.+++.. .+ .. +++|++|++++|.+++.+|..+..+++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 7777777777665321 11 11 5568888888888887888888888899999
Q ss_pred eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCC
Q 045580 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445 (764)
Q Consensus 367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 445 (764)
++++|.+++.+|..+..+++|+.|++++|.+++.+|..+ .+++|+.|++++|++++.+|..+..+++|++|++++|+++
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 999998888888888889999999999999988888877 7889999999999998888888888999999999999999
Q ss_pred CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC-ccccccccccc
Q 045580 446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG-SFVLWETTQRI 524 (764)
Q Consensus 446 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 524 (764)
+.+|.+++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+............. ...........
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 88899999999999999999999988998899999999999999999999988776644221110000 00000000000
Q ss_pred hhh------HHHhhh-hhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc
Q 045580 525 STE------FEAYYN-STLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR 597 (764)
Q Consensus 525 ~~~------~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 597 (764)
... ...+.. ....+..+....... .............+ ..++.|+.|||++|+++|.+|.+++++++|+
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCN--ITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSC--TTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred cccccccccccccccccchhhhccccccccc--cccceecccCchhh--hccccccEEECcCCcccccCCHHHhccccCC
Confidence 000 000000 000000000000000 00000000000011 2367899999999999999999999999999
Q ss_pred eecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCC
Q 045580 598 ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSG 677 (764)
Q Consensus 598 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~ 677 (764)
.|+|++|+++|.+|..++++++|++||||+|+++|.+|..+..+++|++||+++|+++|.||.++||.++...+|.||++
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTE
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 045580 678 LCGPRINKSCTTVL 691 (764)
Q Consensus 678 lc~~~~~~~c~~~~ 691 (764)
+||+|+. .|....
T Consensus 740 Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 740 LCGYPLP-RCDPSN 752 (768)
T ss_dssp EESTTSC-CCCSCC
T ss_pred hcCCCCc-CCCCCc
Confidence 9999986 885443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-63 Score=583.89 Aligned_cols=596 Identities=28% Similarity=0.378 Sum_probs=327.4
Q ss_pred CCCCcEEECcCCccccc---CchhhcCC-----------------------CCCCEEECCCCCCCCcchh--hhhCCCCC
Q 045580 71 LKKLVELDLSKNNLYGH---LSPCLSNL-----------------------THIKVLDLSSNQLTGNLQS--VIANIKSL 122 (764)
Q Consensus 71 l~~L~~L~Ls~n~l~~~---~~~~l~~l-----------------------~~L~~L~Ls~n~l~~~~~~--~~~~l~~L 122 (764)
-.+++.|||+++.+.|. +|.++.++ ++|++|||++|.++|.+|. .++++++|
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 36788899998888876 55555444 5555555555555544444 45555555
Q ss_pred CEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccC--CCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEc
Q 045580 123 EYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEF--PGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDL 200 (764)
Q Consensus 123 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~L 200 (764)
++|++++|.+.+.+|...+.++++|++|++++|.+....... ....+++|++|++++|.+..... +..+++|++|++
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 207 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDV 207 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEEC
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEEC
Confidence 555555555544444333344555555555554442111100 01122345555555555422111 144555566666
Q ss_pred cCCCCCCccchHHhhcCCCCCEEEccCCcCccCC-CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC
Q 045580 201 SHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE 279 (764)
Q Consensus 201 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 279 (764)
++|++++.+|. +.++++|++|++++|.+++.. .....+++|++|++++|.+.+.+|.. .+++|++|++++|.++
T Consensus 208 s~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 208 SSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFT 282 (768)
T ss_dssp CSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEE
T ss_pred cCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccC
Confidence 66655554444 345566666666666555321 12235556666666666665555543 2566666666666666
Q ss_pred ccCCccccCC-CCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee---ecCCCCCCceEEcccccCCCcccc
Q 045580 280 VRIPSSMSEM-KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQD 355 (764)
Q Consensus 280 ~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~ 355 (764)
+.+|..+... ++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.. .+..+++|++|++++|.+++.+|.
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 6666666654 777777777777776666654 56777777777777776443 366777777777777777766666
Q ss_pred cccCCC-CCCEEeCcCCccCCCccccccC--CCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCC
Q 045580 356 GLSKAT-SLLELDLSNNMLYGQIPHWFGN--LSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRS 431 (764)
Q Consensus 356 ~l~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~ 431 (764)
.+..++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+ .+++|+.|++++|.+++.+|..+..+
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC
Confidence 555544 5555555555544433333333 3344444444444444444433 34444444444444444444444444
Q ss_pred CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhccccc
Q 045580 432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQA 511 (764)
Q Consensus 432 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~ 511 (764)
++|+.|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..++.++.+.....
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444433332211110
Q ss_pred CCcccc--c--------------cccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc----------ccc
Q 045580 512 AGSFVL--W--------------ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE----------SYK 565 (764)
Q Consensus 512 ~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~ 565 (764)
...... . ...+.+....+..... ....... .........+....... .+.
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK---QSGKIAA-NFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT---TTTCBCC-STTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc---ccchhhh-hccccccccccccccccccccccccccccc
Confidence 000000 0 0000000000000000 0000000 00000011111110000 000
Q ss_pred ------ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580 566 ------GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT 639 (764)
Q Consensus 566 ------~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~ 639 (764)
...+..+..++++.|.+.|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|||++|+++|.+|+.+.
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 01233455567777888888888888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCC
Q 045580 640 ELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSG 677 (764)
Q Consensus 640 ~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~ 677 (764)
.+++|++||+|+|+++|.+|.. ..+..++...+.+|+.
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999999999999976 5677777788888874
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-55 Score=514.34 Aligned_cols=562 Identities=20% Similarity=0.210 Sum_probs=358.8
Q ss_pred ceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCCh
Q 045580 59 PLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSF 138 (764)
Q Consensus 59 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 138 (764)
.+++..+..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|++++..+.+|+++++|++|++++|+++ .++.
T Consensus 36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~ 114 (680)
T 1ziw_A 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKN 114 (680)
T ss_dssp CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCS
T ss_pred CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccCh
Confidence 334444556777777777777777777777777777777777777777777655556777777777777777776 3443
Q ss_pred hhhccCCCCcEEEccCCCCCCc-cccCCCCCCCCccEEEcCCCCCCCccHh-h--hCCCCccEEEccCCCCCCccchHHh
Q 045580 139 NSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLHALPSF-L--LHQLDLRFIDLSHNKLQGTFPSWLL 214 (764)
Q Consensus 139 ~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l--~~~~~L~~L~Ls~n~l~~~~~~~~~ 214 (764)
..++++++|++|++++|.+... ...+ ..+++|++|++++|.++.++.. + ..+++|++|++++|++++..|.. +
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~ 191 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQ--VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-F 191 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSS--SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-G
T ss_pred hHccccCCCCEEECCCCcccccCchhh--cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-h
Confidence 5567777777777777765322 2222 2345677777777777665432 2 24467777777777776444433 3
Q ss_pred hcCCCCCEEEccCCcCccCCCC----CCCCCCccEEEccCCCCCCCCChhHhhcC--CCCcEEEcccCCCCccCCccccC
Q 045580 215 QNNTKLDTLYLLNNSLSGNFQL----PSSKHDLLRIDISHNKFSGQLPGNMGKIL--PELLSLNLSENGFEVRIPSSMSE 288 (764)
Q Consensus 215 ~~l~~L~~L~L~~n~l~~~~~~----~~~~~~L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~ 288 (764)
..+++|+.|++.++.+...... ....++|+.|++++|.+.+..|..+.. + ++|++|++++|.+++..|..|+.
T Consensus 192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~ 270 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAW 270 (680)
T ss_dssp GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccC
Confidence 4566666666666554321000 002367788888888777655555543 4 34888888888887777777888
Q ss_pred CCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce------e-----ecCCCCCCceEEcccccCCCcccccc
Q 045580 289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE------V-----VFPNSTNLCWLYLNNNHFSGKIQDGL 357 (764)
Q Consensus 289 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~------~-----~~~~~~~L~~L~L~~n~l~~~~~~~l 357 (764)
+++|++|++++|.+.+..|.. +.++++|+.|++++|...+. . .+..+++|++|++++|.+++..+..|
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp CTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred cccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence 888888888888877544444 46778888888876644321 1 45667788888888888887777777
Q ss_pred cCCCCCCEEeCcCCccCCCc--cccccC--CCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccc-hhhcCC
Q 045580 358 SKATSLLELDLSNNMLYGQI--PHWFGN--LSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP-GALRRS 431 (764)
Q Consensus 358 ~~l~~L~~L~L~~n~l~~~~--~~~~~~--l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~-~~~~~~ 431 (764)
..+++|++|++++|.+.... ...|.. .++|+.|++++|++++..|..+ .+++|+.|++++|.+.+.+| ..+.++
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 78888888888877654321 122322 2477788888888777777666 67778888888887776554 567777
Q ss_pred CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCC--ccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhccc
Q 045580 432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK--GNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLG 509 (764)
Q Consensus 432 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 509 (764)
++|++|++++|++++..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..|..+..++.+...
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence 78888888888777666777777778888888877765 4567777777788888888887776666555544322111
Q ss_pred ccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcc
Q 045580 510 QAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSE 589 (764)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~ 589 (764)
...... +.. +.... . ...... .-..+++|+.|+|++|+++...+..
T Consensus 510 ~Ls~N~--------l~~--------------~~~~~--~--------~~~~~~--~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 510 DLQHNN--------LAR--------------LWKHA--N--------PGGPIY--FLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp ECCSSC--------CGG--------------GGSTT--S--------TTSCCC--TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred eCCCCC--------ccc--------------cchhh--c--------cCCcch--hhcCCCCCCEEECCCCCCCCCCHHH
Confidence 000000 000 00000 0 000000 0012456777777777777333345
Q ss_pred ccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc-CCCCCCeEeccCCccccCCCC
Q 045580 590 IGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT-ELNFLSNFNVSYNHLSGPTPN 660 (764)
Q Consensus 590 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~~p~ 660 (764)
|+++++|+.|+|++|++++..+..+.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 67777777777777777755555566777777777777777766666665 566777777777777777665
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.7e-55 Score=507.30 Aligned_cols=532 Identities=21% Similarity=0.222 Sum_probs=356.7
Q ss_pred CcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCC
Q 045580 57 GVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136 (764)
Q Consensus 57 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 136 (764)
+..+....|..+.++++|++|+|++|.+++..+.+|+++++|++|+|++|++++..|..|+++++|++|++++|.+++..
T Consensus 58 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC
Confidence 34445556778999999999999999999777778999999999999999999888889999999999999999998655
Q ss_pred ChhhhccCCCCcEEEccCCCCCC-ccccCCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHh
Q 045580 137 SFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLL 214 (764)
Q Consensus 137 ~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~ 214 (764)
+ ..+.++++|++|++++|.+.. ....+.....++|++|++++|.++.+ |..+..+.+|+.|+++++.+.+.....+.
T Consensus 138 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 138 L-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp C-CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred c-hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHH
Confidence 4 568899999999999998743 23333334456799999999999665 55677777777777777665432222111
Q ss_pred h--cCCCCCEEEccCCcCccCCCCC-CCC--CCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCC
Q 045580 215 Q--NNTKLDTLYLLNNSLSGNFQLP-SSK--HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM 289 (764)
Q Consensus 215 ~--~l~~L~~L~L~~n~l~~~~~~~-~~~--~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 289 (764)
. ..++|++|++++|.+++..... ..+ ++|++|++++|++.+..|..+. .+++|++|++++|.+.+..|..+..+
T Consensus 217 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp HHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred HHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCC
Confidence 0 2366777777777666532111 122 3377777777776644444443 36677777777777766666667777
Q ss_pred CCCCEEECCCCccccc-----Cc---hhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCc--ccccc
Q 045580 290 KRLESLDLSSNNFSGE-----LP---RQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGK--IQDGL 357 (764)
Q Consensus 290 ~~L~~L~Ls~n~l~~~-----~p---~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~--~~~~l 357 (764)
++|++|++++|...+. +| ...+..+++|++|++++|.+.+.. .+..+++|++|++++|.+... ....+
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence 7777777766543321 11 122355666777777777666544 456666677777766654322 11222
Q ss_pred cC--CCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC-Ccc-cCCCccEEeccCCccccccchhhcCCCC
Q 045580 358 SK--ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP-SSF-NLSSLRRLYMHMNAFNGSIPGALRRSSS 433 (764)
Q Consensus 358 ~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 433 (764)
.. .++|+.|++++|++++..|..|..+++|+.|++++|.+++.++ ..+ .+++|+.|++++|++.+..+..|..+++
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 455 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcc
Confidence 22 2466666776666666666666666667777777666665444 233 5666666777666666666666666666
Q ss_pred CCEEEccCCcCC--CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChh--------hhcc
Q 045580 434 LTVLDLRDNQFS--GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC--------FANV 503 (764)
Q Consensus 434 L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~--------~~~l 503 (764)
|+.|++++|.++ +.+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+.. +.++
T Consensus 456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred cccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC
Confidence 666666666664 345666666666666666666666555555666666666666666665432211 1111
Q ss_pred hhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccc---cccccccEEEcccC
Q 045580 504 TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG---DILNYMTGLDFSCN 580 (764)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~LdLs~N 580 (764)
+.+... .+..+....++. ..++.|+.|||++|
T Consensus 536 ~~L~~L---------------------------------------------~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 536 SHLHIL---------------------------------------------NLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp TTCCEE---------------------------------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEE---------------------------------------------ECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 111000 000000000110 23568999999999
Q ss_pred cccccCCccccCccccceecccccccccccCcccc-CCCCCCEEECcCCcCcccCc
Q 045580 581 ELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLS-NLKMIESLDLSHNDLSGQIP 635 (764)
Q Consensus 581 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~LdLs~N~l~~~ip 635 (764)
++++..+..+.++++|+.|+|++|++++..|..++ .+++|+.|++++|++.+..+
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99977777789999999999999999988888887 78999999999999997654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-55 Score=518.08 Aligned_cols=539 Identities=19% Similarity=0.186 Sum_probs=432.4
Q ss_pred CCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcc-hhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcE
Q 045580 71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL-QSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQV 149 (764)
Q Consensus 71 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 149 (764)
.+++++|||++|.+++..+.+|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|++.+..| ..+.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCE
Confidence 478999999999999999999999999999999999766665 7899999999999999999985544 67999999999
Q ss_pred EEccCCCCCCc-cccCCCCCCCCccEEEcCCCCCCCc--cHhhhCCCCccEEEccCCCCCCccchHHhhcC--CCCCEEE
Q 045580 150 FKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLHAL--PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNN--TKLDTLY 224 (764)
Q Consensus 150 L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~l--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~ 224 (764)
|++++|.+... ........+++|++|++++|.+..+ +..+.++++|++|++++|.+++..+..+. .+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEE
Confidence 99999988542 2221234566899999999999665 36789999999999999999977776553 45 8999999
Q ss_pred ccCCcCccCCCCC-CCC------CCccEEEccCCCCCCCCChhHhhcC--CCCcEEEcccC---------CCCccCCccc
Q 045580 225 LLNNSLSGNFQLP-SSK------HDLLRIDISHNKFSGQLPGNMGKIL--PELLSLNLSEN---------GFEVRIPSSM 286 (764)
Q Consensus 225 L~~n~l~~~~~~~-~~~------~~L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n---------~~~~~~~~~l 286 (764)
+++|.+.+..... ..+ ..|+.|++++|.+.+.++..+...+ ++++.|.++.+ .+....+..|
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 9999998643221 122 2499999999999988888776533 57888888733 3333334455
Q ss_pred cCC--CCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCC
Q 045580 287 SEM--KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATS 362 (764)
Q Consensus 287 ~~l--~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 362 (764)
..+ ++|+.|++++|.+.+..| ..+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+++..+..+..+++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hccccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 554 689999999999985444 44578999999999999998765 6888999999999999999888999999999
Q ss_pred CCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCC
Q 045580 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442 (764)
Q Consensus 363 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 442 (764)
|++|++++|.+.+..+..|..+++|++|++++|.+++.. .+++|+.|++++|+++ .+|.. ..+++.|++++|
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N 411 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSEN 411 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCcc-ccccc---ccccceeecccC
Confidence 999999999999888888999999999999999988533 2788999999999998 44533 568999999999
Q ss_pred cCCCcc-hhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccc
Q 045580 443 QFSGSI-PIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWET 520 (764)
Q Consensus 443 ~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 520 (764)
++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~----------------- 474 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD----------------- 474 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS-----------------
T ss_pred ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh-----------------
Confidence 998642 34567899999999999999865443 45668999999999999874332211000
Q ss_pred cccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceec
Q 045580 521 TQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALN 600 (764)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 600 (764)
.+ ..+++|+.|+|++|++++.+|..+.++++|+.|+
T Consensus 475 ------------------------------------------~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 475 ------------------------------------------VF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510 (844)
T ss_dssp ------------------------------------------CS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred ------------------------------------------hh--cCcccccEEECCCCcccccChhHccchhhhheeE
Confidence 00 1245899999999999999999999999999999
Q ss_pred ccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCC
Q 045580 601 LSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG 680 (764)
Q Consensus 601 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~ 680 (764)
|++|++++..|..+. ++|+.|||++|++++.+|..+. +|+.+++++|++.|.|+..+.. .....++..+||
T Consensus 511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~----~~~~~~~~~~~~ 581 (844)
T 3j0a_A 511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFI----NWLNHTNVTIAG 581 (844)
T ss_dssp EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHH----HHHHHTTTTTCC
T ss_pred CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccHHHH----HHHHhcCccccc
Confidence 999999987777766 8999999999999999997764 7889999999999999854321 111234556677
Q ss_pred CCCCCCCCCC
Q 045580 681 PRINKSCTTV 690 (764)
Q Consensus 681 ~~~~~~c~~~ 690 (764)
.+....|..+
T Consensus 582 ~~~~~~C~~p 591 (844)
T 3j0a_A 582 PPADIYCVYP 591 (844)
T ss_dssp CGGGCCCSSC
T ss_pred ccccCccCCc
Confidence 6666677543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-54 Score=496.49 Aligned_cols=520 Identities=21% Similarity=0.177 Sum_probs=436.2
Q ss_pred ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580 64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN 143 (764)
Q Consensus 64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 143 (764)
+|..+. +++++|||++|.+++..|.+|+++++|++|+|++|++++..|.+|+++++|++|++++|++++..| ..+++
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 103 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSG 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSS
T ss_pred CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcc
Confidence 444443 479999999999999989999999999999999999999889999999999999999999985444 67999
Q ss_pred CCCCcEEEccCCCCCCc-cccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCCC
Q 045580 144 HSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLD 221 (764)
Q Consensus 144 l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 221 (764)
+++|++|++++|.+... ...+ ..+++|++|++++|.+..++ ..+..+++|++|++++|++++..|. .+..+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 180 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQAT 180 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCC--TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCC
T ss_pred cccccEeeccccCcccCCcchh--ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hhhhhcccc
Confidence 99999999999988542 3333 44567999999999997762 3344599999999999999954454 456899999
Q ss_pred --EEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC-----ccCCccccCCC--CC
Q 045580 222 --TLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE-----VRIPSSMSEMK--RL 292 (764)
Q Consensus 222 --~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~l~~l~--~L 292 (764)
+|++++|.+++.........+|+.|++++|. .++..+. .+.++....+....+. ...+..+..+. +|
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhh-hccccchhheechhhccccccccChhHhchhhcCce
Confidence 9999999999876555567789999999986 3343333 3555544443332221 11223333333 78
Q ss_pred CEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCC
Q 045580 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN 371 (764)
Q Consensus 293 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 371 (764)
+.|++++|.+. .++...+..+++|++|++++|.++... .+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 257 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccC-ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 99999999998 566665688999999999999988665 6788899999999999999888889999999999999999
Q ss_pred ccCCCccc-cccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCc
Q 045580 372 MLYGQIPH-WFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS 447 (764)
Q Consensus 372 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 447 (764)
.+.+.+|. .+..+++|++|++++|.+++.. +..+ .+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 99876655 5899999999999999998775 5555 899999999999999988899999999999999999999877
Q ss_pred chh-hhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCc-C--hhhhcchhhcccccCCcccccccccc
Q 045580 448 IPI-WINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI-P--VCFANVTLWTLGQAAGSFVLWETTQR 523 (764)
Q Consensus 448 ~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~~~l~~~~~~~~~~~~~~~~~~~~ 523 (764)
.|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.. | ..+.
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---------------------- 473 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ---------------------- 473 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------------------
Confidence 654 4889999999999999999888999999999999999999987522 1 1121
Q ss_pred chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccc
Q 045580 524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSH 603 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 603 (764)
.+++|+.|++++|++++..|..++.+++|+.|+|++
T Consensus 474 --------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 474 --------------------------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp --------------------------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred --------------------------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 245899999999999999999999999999999999
Q ss_pred cccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 604 NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 604 N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
|++++.+|..++++++| .||+++|++++.+|..+..+++|+.+++++|++.|.|+..
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 99999999999999999 9999999999999999999999999999999999998854
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-53 Score=489.45 Aligned_cols=517 Identities=22% Similarity=0.168 Sum_probs=435.0
Q ss_pred ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580 64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN 143 (764)
Q Consensus 64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 143 (764)
+|..+. +++++|+|++|.+++..+.+|.++++|++|+|++|++++..|.+|+++++|++|++++|++++..| ..+++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~ 102 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSG 102 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTT
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCC
Confidence 344443 799999999999999888899999999999999999999889999999999999999999985545 67999
Q ss_pred CCCCcEEEccCCCCCC-ccccCCCCCCCCccEEEcCCCCCC--CccHhhhCCCCccEEEccCCCCCCccchHHhhcCCC-
Q 045580 144 HSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSLH--ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTK- 219 (764)
Q Consensus 144 l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~- 219 (764)
+++|++|++++|.+.. +... ...+.+|++|++++|.+. .+|..+.++++|++|++++|++++..+..+ +.+++
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 179 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLREN 179 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSC--CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHC
T ss_pred cccCCEEEccCCccccccccc--cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhcc
Confidence 9999999999998843 3233 345567999999999996 579999999999999999999996555433 34444
Q ss_pred ---CCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCcc---------CCcccc
Q 045580 220 ---LDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR---------IPSSMS 287 (764)
Q Consensus 220 ---L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~---------~~~~l~ 287 (764)
+++|++++|.+++.........+|++|++++|.+.+.........++.|+.+++..+.+... .+..+.
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred ccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 45899999999876555555569999999999987544444445699999988866544321 112222
Q ss_pred CCCCCCEEEC-CCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580 288 EMKRLESLDL-SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366 (764)
Q Consensus 288 ~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 366 (764)
.+ +++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.....+..+++|++|++++|.+ +.+| .+ .+++|++|
T Consensus 260 ~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L 333 (606)
T 3vq2_A 260 DV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSL 333 (606)
T ss_dssp GS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEE
T ss_pred hc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCcccee
Confidence 22 4667777 67778877776 578999999999999998877888899999999999999 5677 45 89999999
Q ss_pred eCcCCccCCCccccccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCc
Q 045580 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443 (764)
Q Consensus 367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 443 (764)
++++|...+.. .+..+++|++|++++|.+++.. +..+ .+++|+.|++++|.+.+ +|..+..+++|+.|++++|+
T Consensus 334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 334 TLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred eccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 99999655433 6778999999999999998763 5555 88999999999999885 56788999999999999999
Q ss_pred CCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCC-cChhhhcchhhcccccCCcccccccc
Q 045580 444 FSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGP-IPVCFANVTLWTLGQAAGSFVLWETT 521 (764)
Q Consensus 444 l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~ 521 (764)
+++..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+..
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------- 471 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN------------------- 471 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-------------------
Confidence 998877 6889999999999999999998999999999999999999999873 5555443
Q ss_pred ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc
Q 045580 522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL 601 (764)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L 601 (764)
+++|+.|++++|++++.+|..++.+++|+.|+|
T Consensus 472 -----------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 472 -----------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp -----------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 448999999999999999999999999999999
Q ss_pred cccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC-CCCeEeccCCccccCCCCCC
Q 045580 602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN-FLSNFNVSYNHLSGPTPNAG 662 (764)
Q Consensus 602 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~~p~~~ 662 (764)
++|++++.+|..++++++|+.||+++|+++ .+|..+..++ +|+++++++|++.|.++..+
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 999999999999999999999999999999 6788899987 59999999999999998653
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-52 Score=476.08 Aligned_cols=527 Identities=21% Similarity=0.218 Sum_probs=405.3
Q ss_pred cEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccC
Q 045580 75 VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN 154 (764)
Q Consensus 75 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~ 154 (764)
++++.++..++ .+|..+. +++++|+|++|.+++..|.+|+++++|++|++++|++.+ +++..|.++++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCC
Confidence 36788888887 5666665 479999999999999889999999999999999999985 4446788999999999988
Q ss_pred CCCCC-ccccCCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCcc
Q 045580 155 SLVKI-ETEEFPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG 232 (764)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 232 (764)
|.+.. ....+. .+++|++|++++|.++.+ |..+..+++|++|++++|++++..+..++ .+++|++|++++|.+++
T Consensus 91 n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 91 NPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CCCSEECTTTTS--SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCE
T ss_pred CcccccChhhhc--ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccc
Confidence 87643 232232 344577888887777666 45667777777777777777742222222 46777777777777664
Q ss_pred CCC-CCCCCCCcc--EEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccc----cc
Q 045580 233 NFQ-LPSSKHDLL--RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS----GE 305 (764)
Q Consensus 233 ~~~-~~~~~~~L~--~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~ 305 (764)
... ....+++|+ .|++++|.+.+..|..+ . ..+|++|++++|. ..+..+..+.+++...+....+. ..
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-D-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-T-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred cChhhhhhhcccceeEEecCCCccCccChhHh-h-hccccccccCCch---hHHHHhhhccccchhheechhhccccccc
Confidence 311 122455565 66777777664433333 2 3566777776664 22333334433332222211111 12
Q ss_pred CchhhhhCCC--CCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccc
Q 045580 306 LPRQFLSGCF--SLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF 381 (764)
Q Consensus 306 ~p~~~~~~l~--~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 381 (764)
++...+.++. +|+.|++++|.+++.. .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence 3333333333 7889999999988766 5888899999999999988 677788899999999999999987778889
Q ss_pred cCCCCCCEEECcCCCCCCCCCCc-c-cCCCccEEeccCCcccccc--chhhcCCCCCCEEEccCCcCCCcchhhhhcCCC
Q 045580 382 GNLSGLQFLDISENQLSGSVPSS-F-NLSSLRRLYMHMNAFNGSI--PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSY 457 (764)
Q Consensus 382 ~~l~~L~~L~L~~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 457 (764)
..+++|++|++++|.+.+.++.. + .+++|+.|++++|.+.+.. +..+..+++|++|++++|++++..|..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 99999999999999988766654 4 7899999999999988765 778889999999999999998888888999999
Q ss_pred ccEEEccCCcCCccCCcc-ccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhh
Q 045580 458 LGILLLRGNQLKGNIPNQ-LCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTL 536 (764)
Q Consensus 458 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (764)
|++|++++|++++..+.. +..+++|++|++++|.+++..|..+..
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 447 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------------------------------- 447 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT----------------------------------
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC----------------------------------
Confidence 999999999998776544 888999999999999998777765543
Q ss_pred hccccccccccCCccceEEeeccccccccccccccccEEEcccCccccc---CCccccCccccceecccccccccccCcc
Q 045580 537 ELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD---IPSEIGSLSEIRALNLSHNFLSGSIPQS 613 (764)
Q Consensus 537 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---ip~~l~~l~~L~~L~Ls~N~l~~~~p~~ 613 (764)
+++|+.|++++|++++. .+..++.+++|+.|++++|++++..|..
T Consensus 448 --------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 448 --------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp --------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred --------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 34799999999999873 3367999999999999999999999999
Q ss_pred ccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCCCCCC
Q 045580 614 LSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 614 l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~ 681 (764)
++++++|+.|||++|++++.+|..+..++.| +|++++|++++.+|.. ..+..++...+.|||..|..
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9999999999999999999999999999999 9999999999888764 45667778889999998853
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-51 Score=483.75 Aligned_cols=523 Identities=21% Similarity=0.225 Sum_probs=420.1
Q ss_pred cEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccC
Q 045580 75 VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN 154 (764)
Q Consensus 75 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~ 154 (764)
+..|.++++++. +|. ..++|++|||++|.+++..|..|.++++|++|+|++|.+.+.++...|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 357788888885 454 4589999999999999988999999999999999999888788778899999999999999
Q ss_pred CCCCC-ccccCCCCCCCCccEEEcCCCCCCC-ccHh--hhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcC
Q 045580 155 SLVKI-ETEEFPGLPEYQLKALNLRNCSLHA-LPSF--LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230 (764)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~--l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 230 (764)
|.+.. .+..+. .+.+|++|+|++|.+.. +|.. +.++++|++|++++|.+++..+...++++++|++|++++|.+
T Consensus 83 N~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 83 SKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CCCCEECTTSSC--SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CcCcccCHhHcc--CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 98743 344444 34569999999999954 5554 888999999999999998766655567899999999999998
Q ss_pred ccCCCCC-CCC--CCccEEEccCCCCCCCCChhHhhcCC------CCcEEEcccCCCCccCCccccCC---CCCCEEECC
Q 045580 231 SGNFQLP-SSK--HDLLRIDISHNKFSGQLPGNMGKILP------ELLSLNLSENGFEVRIPSSMSEM---KRLESLDLS 298 (764)
Q Consensus 231 ~~~~~~~-~~~--~~L~~L~ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~~~~~~~~~l~~l---~~L~~L~Ls 298 (764)
++..... ..+ ++|+.|++++|.+.+..|..+.. ++ .|++|++++|.+++..+..+... .+++.+.++
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 7642111 122 78899999999988777765433 33 38999999998887777766543 567888877
Q ss_pred CCc---------ccccCchhhhhCC--CCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCE
Q 045580 299 SNN---------FSGELPRQFLSGC--FSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 365 (764)
Q Consensus 299 ~n~---------l~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 365 (764)
.+. +.+ .....+.++ ++|+.|++++|.+.+.. .+..+++|+.|++++|.+++..+..|..+++|++
T Consensus 240 ~~~~~~~~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp SSCCBCSSSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred cccccccccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 332 221 222222333 68999999999888764 6788899999999999999888888999999999
Q ss_pred EeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcC
Q 045580 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444 (764)
Q Consensus 366 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 444 (764)
|++++|.+++..|..|..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++. ..+++|+.|++++|++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL 393 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCc
Confidence 9999999988888889999999999999999988777777 789999999999988743 2378899999999998
Q ss_pred CCcchhhhhcCCCccEEEccCCcCCccC-CccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccccc
Q 045580 445 SGSIPIWINEFSYLGILLLRGNQLKGNI-PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQR 523 (764)
Q Consensus 445 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 523 (764)
+ .+|.. ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+....
T Consensus 394 ~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------- 447 (844)
T 3j0a_A 394 V-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------------------- 447 (844)
T ss_dssp C-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS----------------------
T ss_pred c-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc----------------------
Confidence 8 45543 467889999999988642 23456889999999999998754332110
Q ss_pred chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccc-----ccCCccccCccccce
Q 045580 524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELT-----GDIPSEIGSLSEIRA 598 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~~ip~~l~~l~~L~~ 598 (764)
..+++|+.|+|++|.++ +..|..+.++++|+.
T Consensus 448 -------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 448 -------------------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp -------------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred -------------------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 11457999999999997 455677899999999
Q ss_pred ecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCC
Q 045580 599 LNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGL 678 (764)
Q Consensus 599 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~l 678 (764)
|+|++|++++.+|..+.++++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|.. +..+....+.|||+.
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCC
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcc
Confidence 99999999999999999999999999999999987777766 89999999999999999865 567778889999999
Q ss_pred CCCCC
Q 045580 679 CGPRI 683 (764)
Q Consensus 679 c~~~~ 683 (764)
|..+.
T Consensus 561 C~c~~ 565 (844)
T 3j0a_A 561 CECEL 565 (844)
T ss_dssp CSSSC
T ss_pred ccccc
Confidence 97654
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-50 Score=464.49 Aligned_cols=527 Identities=20% Similarity=0.189 Sum_probs=431.1
Q ss_pred CcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEcc
Q 045580 74 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS 153 (764)
Q Consensus 74 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~ 153 (764)
-++++.+++.++ .+|..+. ++|++|+|++|++++..+..|+++++|++|++++|++++ ++...|.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECC
Confidence 357899999998 4565554 899999999999999888899999999999999999984 444678999999999999
Q ss_pred CCCCCCc-cccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCC-ccchHHhhcCCCCCEEEccCCcC
Q 045580 154 NSLVKIE-TEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQG-TFPSWLLQNNTKLDTLYLLNNSL 230 (764)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l 230 (764)
+|.+... +..+. .+++|++|++++|.+..++ ..+..+++|++|++++|++++ .+|..+ .++++|++|++++|.+
T Consensus 89 ~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 89 GNPIQSFSPGSFS--GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TCCCCCCCTTSST--TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCC
T ss_pred CCcccccChhhcC--CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcc
Confidence 9987433 44444 3457999999999997776 678999999999999999985 567765 4899999999999999
Q ss_pred ccCCCC-CCCCCC----ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC-ccCCccccCCCCCCEEECCCCcccc
Q 045580 231 SGNFQL-PSSKHD----LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE-VRIPSSMSEMKRLESLDLSSNNFSG 304 (764)
Q Consensus 231 ~~~~~~-~~~~~~----L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~ 304 (764)
++.... ...+.+ ++.|++++|.++ .++...+. ..+|++|++++|.+. +..|..+.++++|+.+++..+.+.+
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred eecChhhhhhhhccccccceeeccCCCcc-eeCccccc-CceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 875321 112222 458999999998 56666555 348999999999886 4567788899999988886554432
Q ss_pred -----cCchhhhhCCC--CCCEEEe-eccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC
Q 045580 305 -----ELPRQFLSGCF--SLSFLSL-SDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 375 (764)
Q Consensus 305 -----~~p~~~~~~l~--~L~~L~l-~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 375 (764)
.++...+.++. .++.+++ ..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-S
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-c
Confidence 12222223332 3455666 555665544 57788999999999999974 44 788999999999999999 5
Q ss_pred CccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccc--cchhhcCCCCCCEEEccCCcCCCcchhhhh
Q 045580 376 QIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGS--IPGALRRSSSLTVLDLRDNQFSGSIPIWIN 453 (764)
Q Consensus 376 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 453 (764)
.+|. + .+++|++|++++|...+.. ....+++|+.|++++|.+++. .+..+..+++|++|++++|.+++ +|..+.
T Consensus 321 ~lp~-~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~ 396 (606)
T 3vq2_A 321 QFPT-L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396 (606)
T ss_dssp SCCC-C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred cccc-C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence 7774 5 8999999999999765544 223789999999999999876 37889999999999999999884 668889
Q ss_pred cCCCccEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhh
Q 045580 454 EFSYLGILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYY 532 (764)
Q Consensus 454 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (764)
.+++|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+..
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------ 446 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG------------------------------ 446 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC------------------------------
Confidence 99999999999999998777 68899999999999999998877766654
Q ss_pred hhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc-cCCccccCccccceecccccccccccC
Q 045580 533 NSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG-DIPSEIGSLSEIRALNLSHNFLSGSIP 611 (764)
Q Consensus 533 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~~p 611 (764)
+++|+.|++++|++++ .+|..++.+++|+.|+|++|++++..|
T Consensus 447 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 447 ------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp ------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 3479999999999998 489999999999999999999999999
Q ss_pred ccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCC-CCCccccCCCCCCCCCCC
Q 045580 612 QSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFA-NFDEQNYGGNSGLCGPRI 683 (764)
Q Consensus 612 ~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~-~~~~~~~~gn~~lc~~~~ 683 (764)
..++++++|+.|++++|++++.+|..+..+++|++||+++|+++. +|.. ..+. +++...+.|||..|..+.
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999999999999999999999999999994 6654 4443 467788999999997543
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-48 Score=441.74 Aligned_cols=498 Identities=21% Similarity=0.188 Sum_probs=388.2
Q ss_pred CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEE
Q 045580 72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK 151 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 151 (764)
+++++|||++|.+++..+.+|.++++|++|+|++|++++..+.+|+++++|++|++++|+++ .++...|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence 57999999999999988889999999999999999999888889999999999999999998 45557799999999999
Q ss_pred ccCCCCCCccccCCCCCCCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCC----CEEEc
Q 045580 152 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL----DTLYL 225 (764)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~L 225 (764)
+++|.+..... .....+++|++|++++|.+.. +|..+.++++|++|++++|++++..+.. ++.+++| +.|++
T Consensus 107 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEEC
T ss_pred ccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhccc
Confidence 99998743322 123455679999999999965 7899999999999999999998544443 4467777 89999
Q ss_pred cCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccccc
Q 045580 226 LNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305 (764)
Q Consensus 226 ~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 305 (764)
++|.+++.........+|+.|++++|.............++.++.+.+....+.. ...++ .
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~-----------~ 245 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLE-----------K 245 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCE-----------E
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhh-----------h
Confidence 9999887544333444788888888754432222223346777666654332221 01111 1
Q ss_pred CchhhhhCCC--CCCEEEeecc-ccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccc
Q 045580 306 LPRQFLSGCF--SLSFLSLSDN-HLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW 380 (764)
Q Consensus 306 ~p~~~~~~l~--~L~~L~l~~n-~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 380 (764)
++...+.++. .++.++++++ .+.+.. .+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~- 321 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT- 321 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-
Confidence 1111111222 2344555544 333222 4555677777777777776 466667777 8888888888887 4554
Q ss_pred ccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc--chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCc
Q 045580 381 FGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI--PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458 (764)
Q Consensus 381 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 458 (764)
..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|++++..+. +..+++|
T Consensus 322 -~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L 398 (570)
T 2z63_A 322 -LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL 398 (570)
T ss_dssp -CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred -ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence 4678888888888887766554 56788999999999887654 67888999999999999999865444 8899999
Q ss_pred cEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhh
Q 045580 459 GILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLE 537 (764)
Q Consensus 459 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (764)
++|++++|++.+..+ ..+..+++|++|++++|.+++..|..+..
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------- 443 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------------------------- 443 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------------
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc-----------------------------------
Confidence 999999999987665 56888999999999999998777765544
Q ss_pred ccccccccccCCccceEEeeccccccccccccccccEEEcccCccc-ccCCccccCccccceecccccccccccCccccC
Q 045580 538 LSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELT-GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSN 616 (764)
Q Consensus 538 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 616 (764)
+++|+.|++++|+++ +.+|..++.+++|+.|++++|++++..|..+++
T Consensus 444 -------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 444 -------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp -------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred -------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 347999999999998 679999999999999999999999988999999
Q ss_pred CCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCC
Q 045580 617 LKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQF 664 (764)
Q Consensus 617 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~ 664 (764)
+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.||..+.+
T Consensus 493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999999988889999999999999999999999986543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-47 Score=431.87 Aligned_cols=478 Identities=19% Similarity=0.196 Sum_probs=351.5
Q ss_pred ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580 64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN 143 (764)
Q Consensus 64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 143 (764)
+|..+. ++|++|+|++|.+++..|.+|.++++|++|+|++|++++..|.+|+++++|++|++++|++++ ++...+++
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~ 96 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGP 96 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTT
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhcc
Confidence 455543 799999999999998888999999999999999999999888999999999999999999984 45466888
Q ss_pred CCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEE
Q 045580 144 HSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTL 223 (764)
Q Consensus 144 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 223 (764)
+++|++|++++|.+... .+|..+..+++|++|++++|++.+.+|...+.++++|++|
T Consensus 97 l~~L~~L~Ls~n~l~~~-----------------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTL-----------------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp CTTCCEEECTTCCCSSS-----------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCcEEECCCCccccc-----------------------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 88888888877765321 1123344445555555555553334443333455555555
Q ss_pred EccCCcCccC-CCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccC--C-ccccCCCCCCEEECCC
Q 045580 224 YLLNNSLSGN-FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI--P-SSMSEMKRLESLDLSS 299 (764)
Q Consensus 224 ~L~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~-~~l~~l~~L~~L~Ls~ 299 (764)
++++|.+++. +.....+++|++|+++.|.+. .+|..+...+++|++|++++|.+++.. | .....+++|+.|++++
T Consensus 154 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred eccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence 5555555442 122235566777777777765 667766666889999999999887642 1 2234577899999999
Q ss_pred CcccccCchhh---hhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCC
Q 045580 300 NNFSGELPRQF---LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ 376 (764)
Q Consensus 300 n~l~~~~p~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 376 (764)
|.+.+..+..+ +..+++|+.+++++|.+.+...+.. .....+..+.+|+.|++.++.+...
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~----------------~~~~~~~~l~~L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP----------------SESDVVSELGKVETVTIRRLHIPQF 296 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC----------------CTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccc----------------cchhhhhhhcccccccccccccchh
Confidence 88876554433 2456777888887777654321110 0112234455666666666654421
Q ss_pred -----ccccccCCCCCCEEECcCCCCCCCCCCcc--cCCCccEEeccCCccccccch---hhcCCCCCCEEEccCCcCCC
Q 045580 377 -----IPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPG---ALRRSSSLTVLDLRDNQFSG 446 (764)
Q Consensus 377 -----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~ 446 (764)
++..+...++|+.|++++|.+. .+|..+ .+++|+.|++++|.+.+.+|. .++.+++|+.|++++|++++
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred hhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence 1222334567888888888876 445443 588888999998888876643 36788999999999999986
Q ss_pred cch--hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccc
Q 045580 447 SIP--IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRI 524 (764)
Q Consensus 447 ~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 524 (764)
..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~------------------------- 428 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC------------------------- 428 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT-------------------------
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch-------------------------
Confidence 533 56889999999999999999 688888999999999999999863 2211
Q ss_pred hhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceeccccc
Q 045580 525 STEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHN 604 (764)
Q Consensus 525 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N 604 (764)
.++.|+.||+++|++++.+ +.+++|+.|+|++|
T Consensus 429 -------------------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 429 -------------------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRN 461 (549)
T ss_dssp -------------------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred -------------------------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCC
Confidence 1237899999999999743 57899999999999
Q ss_pred ccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 605 FLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 605 ~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
+++ .+|. .+.+++|+.|||++|++++.+|..+..+++|+.|++++|++.|.||..
T Consensus 462 ~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 462 KLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp CCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred ccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 999 6776 578999999999999999999999999999999999999999999954
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-49 Score=452.10 Aligned_cols=493 Identities=17% Similarity=0.237 Sum_probs=333.0
Q ss_pred CCcccccCCccccCC---CCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCC------CC-
Q 045580 41 GSITDFSVEDSCRKT---SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQL------TG- 110 (764)
Q Consensus 41 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~- 110 (764)
.....|.....||.| .||.|... .+++.|+|+++.+.|.+|.+++++++|++|+|++|.+ .+
T Consensus 55 ~~~~~W~~~~~~c~w~~~~GV~C~~~--------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~ 126 (636)
T 4eco_A 55 QPGANWNFNKELDMWGAQPGVSLNSN--------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126 (636)
T ss_dssp ---CCCCCSSCGGGTTCCTTEEECTT--------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBST
T ss_pred ccCCCCCCCCCcccccCCCCeEEcCC--------CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccc
Confidence 344679888889999 99998521 6899999999999999999999999999999999976 22
Q ss_pred -----cchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcC--CCCCC
Q 045580 111 -----NLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR--NCSLH 183 (764)
Q Consensus 111 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~--~n~l~ 183 (764)
.+|... +.+|+ +++++|.+.+.++...-..+.++..+++....+. ......++.+.+. .|+++
T Consensus 127 ~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~ 196 (636)
T 4eco_A 127 KGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNIT 196 (636)
T ss_dssp TSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEE
T ss_pred cccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCc
Confidence 334333 45666 7888887776655321112222222222211110 0011112222222 24443
Q ss_pred CccHhhhCCCCccEEEccCCCCCCc-cchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHh
Q 045580 184 ALPSFLLHQLDLRFIDLSHNKLQGT-FPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMG 262 (764)
Q Consensus 184 ~lp~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 262 (764)
.+|..++++++|++|+|++|++++. ++... .+. +.....+.+|..++
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----------------------~~~----------~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAW----------------------ENE----------NSEYAQQYKTEDLK 244 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSC----------------------SCT----------TSHHHHHHTTSCCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccc----------------------ccc----------ccchhcccCchhhh
Confidence 3565566666666666666655542 11000 000 00000011444443
Q ss_pred -hcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCc-ccc-cCchhhhh-----CCCCCCEEEeecccccceee--
Q 045580 263 -KILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN-FSG-ELPRQFLS-----GCFSLSFLSLSDNHLQGEVV-- 332 (764)
Q Consensus 263 -~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~-----~l~~L~~L~l~~n~l~~~~~-- 332 (764)
..+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+.. .+++|++|++++|.++....
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 126667777777776666666667777777777777776 665 56655421 12666666666666664332
Q ss_pred -cCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCC-CCEEECcCCCCCCCCCCcc-c--C
Q 045580 333 -FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG-LQFLDISENQLSGSVPSSF-N--L 407 (764)
Q Consensus 333 -~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~-~--~ 407 (764)
+..+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+ . +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 5667777777777777776777 7777888888888888887 67777888888 888888888887 566655 2 3
Q ss_pred CCccEEeccCCccccccchhhc-------CCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccC-C
Q 045580 408 SSLRRLYMHMNAFNGSIPGALR-------RSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH-L 479 (764)
Q Consensus 408 ~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l 479 (764)
++|+.|++++|.+.+..|..+. .+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..... .
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 4788888888888887777777 6778888999988888443344566888889999888888 55544322 2
Q ss_pred -------CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccc
Q 045580 480 -------SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRG 552 (764)
Q Consensus 480 -------~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 552 (764)
++|+.|++++|+++ .+|..+..
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------------------------------- 509 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------------------------------------------------- 509 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------------------------------------
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhh--------------------------------------------------
Confidence 28889999999887 56654430
Q ss_pred eEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc------cccccccccCccccCCCCCCEEECc
Q 045580 553 IEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL------SHNFLSGSIPQSLSNLKMIESLDLS 626 (764)
Q Consensus 553 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~LdLs 626 (764)
..+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..++++++|+.|||+
T Consensus 510 --------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 510 --------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp --------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred --------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 014478889999999986 8888888999999988 5677888899999999999999999
Q ss_pred CCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580 627 HNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 627 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 656 (764)
+|++ +.+|..+. ++|+.||+++|++.+
T Consensus 575 ~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 575 SNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 9999 57888765 789999999998775
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-46 Score=424.76 Aligned_cols=503 Identities=21% Similarity=0.249 Sum_probs=386.5
Q ss_pred CcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEcc
Q 045580 74 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS 153 (764)
Q Consensus 74 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~ 153 (764)
.+.++.++..++ .+|..+. +++++|+|++|++++..+.+|.++++|++|++++|++++ ++...|+++++|++|+++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCc
Confidence 345777777777 4555443 579999999999998888899999999999999999984 555678888888888888
Q ss_pred CCCCC-CccccCCCCCCCCccEEEcCCCCCCCccH-hhhCCCCccEEEccCCCCCC-ccchHHhhcCCCCCEEEccCCcC
Q 045580 154 NSLVK-IETEEFPGLPEYQLKALNLRNCSLHALPS-FLLHQLDLRFIDLSHNKLQG-TFPSWLLQNNTKLDTLYLLNNSL 230 (764)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l 230 (764)
+|.+. .+...+.. +++|++|++++|++..++. .+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+
T Consensus 85 ~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 85 GNPIQSLALGAFSG--LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TCCCCEECTTTTTT--CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCC
T ss_pred CCcCCccCHhhhcC--ccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCcc
Confidence 77663 22233332 3457777777777766654 46666677777777776664 245443 3556666666555555
Q ss_pred ccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCC----cEEEcccCCCCccCCccccCCCCCCEEECCCCcccccC
Q 045580 231 SGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPEL----LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306 (764)
Q Consensus 231 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 306 (764)
++ ..+..+. .+++| +.|++++|.+++..|..+..+ +|+.|++++|......
T Consensus 162 ~~-----------------------~~~~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~ 216 (570)
T 2z63_A 162 QS-----------------------IYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216 (570)
T ss_dssp CE-----------------------ECGGGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH
T ss_pred ce-----------------------ecHHHcc-chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc
Confidence 42 2333333 25555 778888888877767666655 7888888877544332
Q ss_pred chhhhhCCCCCCEEEeeccccccee--------ecCCCC--CCceEEcccc-cCCCcccccccCCCCCCEEeCcCCccCC
Q 045580 307 PRQFLSGCFSLSFLSLSDNHLQGEV--------VFPNST--NLCWLYLNNN-HFSGKIQDGLSKATSLLELDLSNNMLYG 375 (764)
Q Consensus 307 p~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 375 (764)
....+..++.++...+....+.... .+..++ .++.++++++ .+.+..+..+..+++|+.|++++|.+.
T Consensus 217 ~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~- 295 (570)
T 2z63_A 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE- 295 (570)
T ss_dssp HHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-
T ss_pred hhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-
Confidence 2333466777776665543322110 122222 3567778777 677788889999999999999999998
Q ss_pred CccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcc--hhhhh
Q 045580 376 QIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI--PIWIN 453 (764)
Q Consensus 376 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~ 453 (764)
.+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|++++.. |..+.
T Consensus 296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 296 RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence 688888888 9999999999998 4443 3688999999999998877664 67899999999999998654 78899
Q ss_pred cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcCh-hhhcchhhcccccCCccccccccccchhhHHHhh
Q 045580 454 EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPV-CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYY 532 (764)
Q Consensus 454 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (764)
.+++|++|++++|++++..+ .+..+++|+.|++++|.+++..|. .+.+
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------ 419 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------------------ 419 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTT------------------------------
T ss_pred ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhc------------------------------
Confidence 99999999999999996444 499999999999999998865542 2222
Q ss_pred hhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccc-cccC
Q 045580 533 NSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS-GSIP 611 (764)
Q Consensus 533 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p 611 (764)
+++|+.|++++|++.+.+|..+..+++|+.|++++|+++ +.+|
T Consensus 420 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p 463 (570)
T 2z63_A 420 ------------------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463 (570)
T ss_dssp ------------------------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ------------------------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch
Confidence 458999999999999999999999999999999999998 6799
Q ss_pred ccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCCCCCC
Q 045580 612 QSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 612 ~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~ 681 (764)
..++.+++|+.|++++|++++..|..+..+++|++|++++|++++..|.. ..+..++...+.+|+..|..
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 99999999999999999999999999999999999999999999987764 56777888889999988764
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-44 Score=418.74 Aligned_cols=513 Identities=22% Similarity=0.181 Sum_probs=412.4
Q ss_pred CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEE
Q 045580 72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK 151 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 151 (764)
+++++|||++|.|++..+.+|.++++|++|||++|+|++..+.+|.++++|++|+|++|+++ .+|...|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence 48999999999999888899999999999999999999888889999999999999999998 67777899999999999
Q ss_pred ccCCCCC-CccccCCCCCCCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCC----CCCEEE
Q 045580 152 LSNSLVK-IETEEFPGLPEYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNT----KLDTLY 224 (764)
Q Consensus 152 l~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~----~L~~L~ 224 (764)
+++|.+. ++...+. .+++|++|++++|.+.. +|..+..+++|++|++++|++++..+..+ ..+. ....++
T Consensus 131 Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 131 AVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLD 207 (635)
T ss_dssp CTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEE
T ss_pred CCCCcCCCCChhhhh--cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhh
Confidence 9999884 3333343 45579999999999964 57888999999999999999996555543 2333 345789
Q ss_pred ccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCC------CccCCccccCCCCCCEEECC
Q 045580 225 LLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGF------EVRIPSSMSEMKRLESLDLS 298 (764)
Q Consensus 225 L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~l~~l~~L~~L~Ls 298 (764)
++.|.+............++.+++.+|.....++......++.++...+..+.. .......+..+..+...++.
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 999999876545556667888999998776555555556678887776654332 22233445555666666655
Q ss_pred CCcccc---cCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC
Q 045580 299 SNNFSG---ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 375 (764)
Q Consensus 299 ~n~l~~---~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 375 (764)
.+.... .++. .+....+++.+.+.++.+.....+.....++.|++.+|.+....+. .+..|+.+++..|....
T Consensus 288 ~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 288 LAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EECCCSCEEECTT-TTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC
T ss_pred hhhhcccccchhh-hhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC
Confidence 543321 1122 2356778999999999887776777788999999999988765443 46788999999998764
Q ss_pred CccccccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcch-hh
Q 045580 376 QIPHWFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IW 451 (764)
Q Consensus 376 ~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~ 451 (764)
. .....+++|+.|++++|.+.... +... .+.+|+.+++..+.... .+..+..+++|+.+++..+......+ ..
T Consensus 364 ~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 364 A--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp B--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred C--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccc
Confidence 3 34557899999999999986433 2233 67899999999998764 45567889999999999988765544 45
Q ss_pred hhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC-CcChhhhcchhhcccccCCccccccccccchhhHHH
Q 045580 452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG-PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEA 530 (764)
Q Consensus 452 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (764)
+..+++++.++++.|.+.+..+..+..++.|+.|++++|++.+ ..|..+..
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---------------------------- 492 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------------- 492 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh----------------------------
Confidence 7889999999999999998888889999999999999997543 34433332
Q ss_pred hhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceeccccccccccc
Q 045580 531 YYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSI 610 (764)
Q Consensus 531 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 610 (764)
+++|+.|||++|++++.+|..|+++++|++|+|++|+|++..
T Consensus 493 --------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 493 --------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp --------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred --------------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 458999999999999999999999999999999999999989
Q ss_pred CccccCCCCCCEEECcCCcCcccCcccccCC-CCCCeEeccCCccccCCCCC
Q 045580 611 PQSLSNLKMIESLDLSHNDLSGQIPPQLTEL-NFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 611 p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~~p~~ 661 (764)
|..++++++|++|||++|+|++.+|..+..+ ++|++|++++|+++|.|...
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 9999999999999999999999999999998 68999999999999998754
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-46 Score=418.36 Aligned_cols=458 Identities=21% Similarity=0.246 Sum_probs=297.6
Q ss_pred cEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccC
Q 045580 75 VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN 154 (764)
Q Consensus 75 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~ 154 (764)
++||+++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++..| ..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence 46788888887 4555554 788888888888887777778888888888888888774333 5577777777777666
Q ss_pred CCCCCccccCCCCCCCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCcc
Q 045580 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG 232 (764)
Q Consensus 155 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 232 (764)
|.+..-+.. .+++|++|++++|.++. +|..++.+++|++|++++|++++. .+..+++|
T Consensus 79 N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L------------ 138 (520)
T 2z7x_B 79 NKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHL------------ 138 (520)
T ss_dssp SCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTS------------
T ss_pred CceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccc------------
Confidence 655311111 34456666666666643 456666666666666666666531 12233333
Q ss_pred CCCCCCCCCCccEEEccCCCC--CCCCChhHhhcCC-CCcEEEcccCCCCccCC-ccccCCCCCCEEECCCCc-------
Q 045580 233 NFQLPSSKHDLLRIDISHNKF--SGQLPGNMGKILP-ELLSLNLSENGFEVRIP-SSMSEMKRLESLDLSSNN------- 301 (764)
Q Consensus 233 ~~~~~~~~~~L~~L~ls~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~------- 301 (764)
+|++|++++|.+ .+..|..+.. +. ....+++++|.+.+.++ ..+..+++|+.|++++|.
T Consensus 139 ---------~L~~L~l~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 139 ---------NISKVLLVLGETYGEKEDPEGLQD-FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp ---------CEEEEEEEECTTTTSSCCTTTTTT-CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred ---------eeeEEEeecccccccccccccccc-cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 114444444444 3444544332 22 23356677777665444 356667777777777775
Q ss_pred ccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccc
Q 045580 302 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF 381 (764)
Q Consensus 302 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 381 (764)
+.+.+| . +..+++|+.|++++|.+.+.. +.+.. ..+ ..++|++|++++|.+++.+|..+
T Consensus 209 ~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~-----------------~~~~~-~~~-~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 209 FLSILA-K-LQTNPKLSNLTLNNIETTWNS-----------------FIRIL-QLV-WHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp HHHHHH-G-GGGCTTCCEEEEEEEEEEHHH-----------------HHHHH-HHH-HTSSCSEEEEEEEEEESCCCCCC
T ss_pred eecchh-h-hccccchhhccccccccCHHH-----------------HHHHH-HHh-hhCcccEEEeecccccCccccch
Confidence 444444 2 356666777766666554321 00000 000 12355555555555555555554
Q ss_pred -----cCCCCCCEEECcCCCCCCCCC-Ccc-c---CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhh
Q 045580 382 -----GNLSGLQFLDISENQLSGSVP-SSF-N---LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451 (764)
Q Consensus 382 -----~~l~~L~~L~L~~n~l~~~~~-~~~-~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 451 (764)
..+++|+.+++++|.+ .+| ..+ . ..+|+.|++++|.+.+.. .+..+++|++|++++|++++..|..
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence 5556666666666665 233 111 1 145666666666654322 1246777888888888888777777
Q ss_pred hhcCCCccEEEccCCcCCc--cCCccccCCCCCCEEeCCCCcCcCCcChh-hhcchhhcccccCCccccccccccchhhH
Q 045580 452 INEFSYLGILLLRGNQLKG--NIPNQLCHLSLLNILDLSYNKFNGPIPVC-FANVTLWTLGQAAGSFVLWETTQRISTEF 528 (764)
Q Consensus 452 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (764)
++.+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +.
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~--------------------------- 396 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--------------------------- 396 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC---------------------------
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc---------------------------
Confidence 7888888888888888875 45567788888888888888887655532 11
Q ss_pred HHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceeccccccccc
Q 045580 529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSG 608 (764)
Q Consensus 529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 608 (764)
.++.|+.|++++|++++.+|..+. ++|+.|++++|+++
T Consensus 397 ---------------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 397 ---------------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK- 434 (520)
T ss_dssp ---------------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-
T ss_pred ---------------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-
Confidence 134788888888888888877765 78999999999999
Q ss_pred ccCccccCCCCCCEEECcCCcCcccCccc-ccCCCCCCeEeccCCccccCCCCC
Q 045580 609 SIPQSLSNLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 609 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
.+|..+..+++|+.|++++|+++. +|.. +..+++|++|++++|+++|.|+..
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCch
Confidence 888888899999999999999994 5655 889999999999999999988854
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.9e-46 Score=430.82 Aligned_cols=471 Identities=18% Similarity=0.279 Sum_probs=240.7
Q ss_pred CCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEEC-CCCCCCCcchhhhhCC-CCCCE-----EEC-
Q 045580 56 SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDL-SSNQLTGNLQSVIANI-KSLEY-----LSL- 127 (764)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l-~~L~~-----L~L- 127 (764)
.||.|.. -.+++.|+|++|.+.|.+|++|++|++|++|+| ++|.++|..|-..... ..+.. +..
T Consensus 315 ~GV~C~~--------~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~ 386 (876)
T 4ecn_A 315 PGVDLDN--------NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386 (876)
T ss_dssp TTEEECT--------TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTH
T ss_pred CceEecC--------CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHh
Confidence 8888753 168999999999999999999999999999999 8888876533111100 00000 000
Q ss_pred ---------cCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCC--CCCCCccHhhhCCCCcc
Q 045580 128 ---------DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRN--CSLHALPSFLLHQLDLR 196 (764)
Q Consensus 128 ---------s~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~--n~l~~lp~~l~~~~~L~ 196 (764)
....+.+.++ ..+...+.. .. ........++.+.+.. |+++.+|..++++++|+
T Consensus 387 ~~~~~l~~~~~~~~s~l~~-~~l~~~~~~-----------~~---i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~ 451 (876)
T 4ecn_A 387 YKKMFLDYDQRLNLSDLLQ-DAINRNPEM-----------KP---IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451 (876)
T ss_dssp HHHHHTCCCGGGGSCHHHH-HHHHTCTTS-----------CC---CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC
T ss_pred hhhhhhccCcchhhhHHHH-HHhhhCccc-----------cc---cccccccchhhceeccccCcccchhHHHhcCCCCC
Confidence 0000000000 000000000 00 0001111233333333 55544777777777777
Q ss_pred EEEccCCCCCCc-cchHHhhcCCCCCEEEccCCcCcc-CCCCCC--CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEE
Q 045580 197 FIDLSHNKLQGT-FPSWLLQNNTKLDTLYLLNNSLSG-NFQLPS--SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLN 272 (764)
Q Consensus 197 ~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 272 (764)
+|+|++|++++. ++.... + .+.|.+.+ .+.... .+++|++|++++|.+.+.+|..+.. +++|++|+
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~---~------~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~ 521 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWE---D------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLN 521 (876)
T ss_dssp EEEEESCCCCGGGBSSSCS---C------TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEE
T ss_pred EEECcCCcCCCCccccccc---c------cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEE
Confidence 777777777751 111000 0 00000000 011111 2334444444444444444544433 45555555
Q ss_pred cccCC-CCc-cCCccccCCC-------CCCEEECCCCcccccCch-hhhhCCCCCCEEEeecccccceeecCCCCCCceE
Q 045580 273 LSENG-FEV-RIPSSMSEMK-------RLESLDLSSNNFSGELPR-QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWL 342 (764)
Q Consensus 273 L~~n~-~~~-~~~~~l~~l~-------~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 342 (764)
+++|+ +++ .+|..++.++ +|++|++++|.+. .+|. ..+..+++|+.|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L---------------------- 578 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL---------------------- 578 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE----------------------
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE----------------------
Confidence 55554 444 4444333322 5555555555554 4444 112344444444
Q ss_pred EcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCC-CCEEECcCCCCCCCCCCcc-cC--CCccEEeccCC
Q 045580 343 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG-LQFLDISENQLSGSVPSSF-NL--SSLRRLYMHMN 418 (764)
Q Consensus 343 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~-~~--~~L~~L~l~~n 418 (764)
++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+ .+ ++|+.|++++|
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 44444444 333 4444555555555555554 44444545554 555555555554 333333 11 22555555555
Q ss_pred ccccccchh---hc--CCCCCCEEEccCCcCCCcchhhh-hcCCCccEEEccCCcCCccCCccccC--------CCCCCE
Q 045580 419 AFNGSIPGA---LR--RSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPNQLCH--------LSLLNI 484 (764)
Q Consensus 419 ~l~~~~~~~---~~--~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~ 484 (764)
.+.+.+|.. +. .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|..+.. +++|+.
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCE
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccE
Confidence 554433311 11 2235666666666665 333333 35566666666666665 44433322 126666
Q ss_pred EeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccc
Q 045580 485 LDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESY 564 (764)
Q Consensus 485 L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 564 (764)
|+|++|+++ .+|..+..
T Consensus 733 L~Ls~N~L~-~lp~~l~~-------------------------------------------------------------- 749 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRA-------------------------------------------------------------- 749 (876)
T ss_dssp EECCSSCCC-CCCGGGST--------------------------------------------------------------
T ss_pred EECCCCCCc-cchHHhhh--------------------------------------------------------------
Confidence 666666665 44433320
Q ss_pred cccccccccEEEcccCcccccCCccccCccccceecccc------cccccccCccccCCCCCCEEECcCCcCcccCcccc
Q 045580 565 KGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSH------NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQL 638 (764)
Q Consensus 565 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l 638 (764)
..+++|+.|+|++|++++ +|..++++++|+.|+|++ |++.+.+|..++++++|+.|+|++|++ +.+|..+
T Consensus 750 --~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 750 --TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp --TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred --ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 013356666666666665 566666666666666654 677777787787888888888888887 5777765
Q ss_pred cCCCCCCeEeccCCccccC
Q 045580 639 TELNFLSNFNVSYNHLSGP 657 (764)
Q Consensus 639 ~~l~~L~~L~ls~N~l~g~ 657 (764)
. ++|+.||+++|++...
T Consensus 826 ~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 826 T--PQLYILDIADNPNISI 842 (876)
T ss_dssp C--SSSCEEECCSCTTCEE
T ss_pred c--CCCCEEECCCCCCCcc
Confidence 5 5778888888877553
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.4e-45 Score=413.26 Aligned_cols=475 Identities=20% Similarity=0.212 Sum_probs=358.3
Q ss_pred EECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCC
Q 045580 77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSL 156 (764)
Q Consensus 77 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 156 (764)
.|.+++.++ .+|..+. ++|++|+|++|++++..|.+|.++++|++|++++|++++..+ ..+.++++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~---------- 75 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGS---------- 75 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTT----------
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhcccccc----------
Confidence 466778887 4555443 789999999999998888889999999999999998874332 33444443
Q ss_pred CCCccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCc-cchHHhhcCCCCCEEEccCCcCccCC
Q 045580 157 VKIETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGT-FPSWLLQNNTKLDTLYLLNNSLSGNF 234 (764)
Q Consensus 157 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~ 234 (764)
|++|++++|.++.++ ..+..+++|++|++++|++++. .|.
T Consensus 76 ---------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----------------------- 117 (549)
T 2z81_A 76 ---------------LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS----------------------- 117 (549)
T ss_dssp ---------------CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-----------------------
T ss_pred ---------------CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-----------------------
Confidence 344444444444443 3366666666666666666531 222
Q ss_pred CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCC
Q 045580 235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC 314 (764)
Q Consensus 235 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 314 (764)
....+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+
T Consensus 118 -~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l 195 (549)
T 2z81_A 118 -LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL 195 (549)
T ss_dssp -SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHST
T ss_pred -hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhc
Confidence 22344455555555555333555433345888999999999998888888999999999999998886 7777777778
Q ss_pred CCCCEEEeeccccccee-----ecCCCCCCceEEcccccCCCccc----ccccCCCCCCEEeCcCCccCCCc------cc
Q 045580 315 FSLSFLSLSDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSNNMLYGQI------PH 379 (764)
Q Consensus 315 ~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~------~~ 379 (764)
++|++|++++|.+++.. ....+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ..
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 99999999999888742 33457889999999998876443 34467889999999999877531 23
Q ss_pred cccCCCCCCEEECcCCCCCCCC-----CCcc-cCCCccEEeccCCccccccchhh-cCCCCCCEEEccCCcCCCcchh--
Q 045580 380 WFGNLSGLQFLDISENQLSGSV-----PSSF-NLSSLRRLYMHMNAFNGSIPGAL-RRSSSLTVLDLRDNQFSGSIPI-- 450 (764)
Q Consensus 380 ~~~~l~~L~~L~L~~n~l~~~~-----~~~~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~-- 450 (764)
.+..+++|+.|++.++.+.... +..+ ...+|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|.
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 354 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccch
Confidence 4567889999999999876432 1112 3578999999999987 566555 6799999999999999987754
Q ss_pred -hhhcCCCccEEEccCCcCCccCC--ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhh
Q 045580 451 -WINEFSYLGILLLRGNQLKGNIP--NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE 527 (764)
Q Consensus 451 -~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 527 (764)
.++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------- 408 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW------------------------- 408 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-------------------------
T ss_pred hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-------------------------
Confidence 37889999999999999986532 55888999999999999998 45543322
Q ss_pred HHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccc
Q 045580 528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS 607 (764)
Q Consensus 528 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 607 (764)
+++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 409 -----------------------------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 409 -----------------------------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD 444 (549)
T ss_dssp -----------------------------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCS
T ss_pred -----------------------------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChh
Confidence 347999999999998 4555443 68999999999999
Q ss_pred cccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCCCCCCC
Q 045580 608 GSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGPR 682 (764)
Q Consensus 608 ~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~~ 682 (764)
+.+ +.+++|++|||++|+++ .+|. ...+++|++||+++|++++.+|.. ..+..++...+.||+..|..+
T Consensus 445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 445 SFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 753 57899999999999999 6776 467999999999999999988864 677788888999999988643
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=405.90 Aligned_cols=443 Identities=20% Similarity=0.224 Sum_probs=337.9
Q ss_pred ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580 64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN 143 (764)
Q Consensus 64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 143 (764)
+|..+. ++|++|+|++|.+++..|.+|.++++|++|+|++|++++..|.+|+++++|++|++++|+++ .+|.. .
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~ 88 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---P 88 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---C
T ss_pred cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---c
Confidence 455554 89999999999999988899999999999999999999988999999999999999999998 66643 8
Q ss_pred CCCCcEEEccCCCCCC-c-cccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCc--cEEEccCCCC--CCccchHHhhcC
Q 045580 144 HSKLQVFKLSNSLVKI-E-TEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDL--RFIDLSHNKL--QGTFPSWLLQNN 217 (764)
Q Consensus 144 l~~L~~L~l~~~~~~~-~-~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L--~~L~Ls~n~l--~~~~~~~~~~~l 217 (764)
+++|++|++++|.+.. . +..+. .+++|++|++++|.+.. ..+..+++| +.|++++|++ .+..|..+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l---- 160 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGL---- 160 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT----
T ss_pred cCCccEEeccCCccccccchhhhc--cCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccc----
Confidence 9999999999998854 2 23333 34579999999999965 356677777 9999999999 66666543
Q ss_pred CCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCC-------CCccCCccccCCC
Q 045580 218 TKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENG-------FEVRIPSSMSEMK 290 (764)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~l~~l~ 290 (764)
..++. ....+++++|.+.+.++......+++|+.|++++|. +.+.+| .+..++
T Consensus 161 ~~l~~-------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~ 220 (520)
T 2z7x_B 161 QDFNT-------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP 220 (520)
T ss_dssp TTCCE-------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT
T ss_pred ccccc-------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc
Confidence 22220 122345555655555665555557788888888876 555555 788899
Q ss_pred CCCEEECCCCcccccCchhhhh--CCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccc-----cCCCCC
Q 045580 291 RLESLDLSSNNFSGELPRQFLS--GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL-----SKATSL 363 (764)
Q Consensus 291 ~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L 363 (764)
+|+.|++++|.+.+..+..+.. ..++|++|++ ++|.+++.+|..+ ..+++|
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l----------------------~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI----------------------SNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE----------------------EEEEEESCCCCCCCCCCSCCCCEE
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEe----------------------ecccccCccccchhhcccccCcee
Confidence 9999999998887544333221 1234444444 4444444555555 666777
Q ss_pred CEEeCcCCccCCCcc-ccccCC---CCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580 364 LELDLSNNMLYGQIP-HWFGNL---SGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL 439 (764)
Q Consensus 364 ~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 439 (764)
+.+++++|.+ .+| ..+..+ .+|+.|++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++
T Consensus 279 ~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 279 SIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred Eeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 7777777766 334 334333 567777777777654321 125678888888888888878888888999999999
Q ss_pred cCCcCCC--cchhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccc
Q 045580 440 RDNQFSG--SIPIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFV 516 (764)
Q Consensus 440 ~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~ 516 (764)
++|++++ .+|..++.+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---------------- 419 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---------------- 419 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC----------------
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh----------------
Confidence 9999986 5667889999999999999999975665 47888999999999999986555332
Q ss_pred cccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcccc
Q 045580 517 LWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEI 596 (764)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 596 (764)
.+.|+.||+++|+++ .+|..+..+++|
T Consensus 420 ----------------------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L 446 (520)
T 2z7x_B 420 ----------------------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEAL 446 (520)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred ----------------------------------------------------cccCCEEECCCCccc-ccchhhhcCCCC
Confidence 137899999999999 899988899999
Q ss_pred ceecccccccccccCcc-ccCCCCCCEEECcCCcCcccCc
Q 045580 597 RALNLSHNFLSGSIPQS-LSNLKMIESLDLSHNDLSGQIP 635 (764)
Q Consensus 597 ~~L~Ls~N~l~~~~p~~-l~~l~~L~~LdLs~N~l~~~ip 635 (764)
+.|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 447 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999999 56665 9999999999999999997654
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-45 Score=423.63 Aligned_cols=470 Identities=16% Similarity=0.197 Sum_probs=368.9
Q ss_pred CCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEE
Q 045580 96 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL 175 (764)
Q Consensus 96 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 175 (764)
.+++.|+|++|.+.|.+|.+++++++|++|+|++|.+..... .++. ...
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~--~~~~-----------------~~~------------ 129 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER--LFGP-----------------KGI------------ 129 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCC--SBST-----------------TSB------------
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCc--cccc-----------------ccc------------
Confidence 578899999999999999999999999999999997631100 0000 000
Q ss_pred EcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEc--cCCCC
Q 045580 176 NLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI--SHNKF 253 (764)
Q Consensus 176 ~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l--s~n~l 253 (764)
...+|... +..|+ ++++.+.+.+.+|..+...+..+..+++....+.. .....++.+.+ ..|++
T Consensus 130 ------~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~l~~l~l~~~~n~l 195 (636)
T 4eco_A 130 ------SANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-----SSRITLKDTQIGQLSNNI 195 (636)
T ss_dssp ------CTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-----CCCCCCCTTTTTCCSCEE
T ss_pred ------ccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-----ccccchhhhhhccccCCC
Confidence 01233333 33455 66666666665555432222222222333222221 11122222333 35788
Q ss_pred CCCCChhHhhcCCCCcEEEcccCCCCcc-----------------CCcccc--CCCCCCEEECCCCcccccCchhhhhCC
Q 045580 254 SGQLPGNMGKILPELLSLNLSENGFEVR-----------------IPSSMS--EMKRLESLDLSSNNFSGELPRQFLSGC 314 (764)
Q Consensus 254 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l 314 (764)
++ +|..++. +++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+ ..+
T Consensus 196 ~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l 272 (636)
T 4eco_A 196 TF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KAL 272 (636)
T ss_dssp EE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTC
T ss_pred cc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcC
Confidence 87 8998865 99999999999999986 999999 99999999999999999999765 789
Q ss_pred CCCCEEEeeccc-ccc-ee--ecCC------CCCCceEEcccccCCCcccc--cccCCCCCCEEeCcCCccCCCcccccc
Q 045580 315 FSLSFLSLSDNH-LQG-EV--VFPN------STNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFG 382 (764)
Q Consensus 315 ~~L~~L~l~~n~-l~~-~~--~~~~------~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~ 382 (764)
++|++|++++|+ +++ .. .+.. +++|++|++++|.++ .+|. .++.+++|++|++++|.++|.+| .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 876 32 3444 489999999999999 7888 89999999999999999998888 899
Q ss_pred CCCCCCEEECcCCCCCCCCCCcc-cCCC-ccEEeccCCccccccchhhcCCC--CCCEEEccCCcCCCcchhhhh-----
Q 045580 383 NLSGLQFLDISENQLSGSVPSSF-NLSS-LRRLYMHMNAFNGSIPGALRRSS--SLTVLDLRDNQFSGSIPIWIN----- 453 (764)
Q Consensus 383 ~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~----- 453 (764)
.+++|++|++++|+++ .+|..+ .+++ |+.|++++|.++ .+|..+..++ +|+.|++++|++++..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 9999999999999999 666666 8888 999999999998 7787777655 899999999999999998888
Q ss_pred --cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHh
Q 045580 454 --EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAY 531 (764)
Q Consensus 454 --~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (764)
.+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|.........
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~------------------------- 482 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE------------------------- 482 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-------------------------
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-------------------------
Confidence 7889999999999999444444567999999999999998 565433211000
Q ss_pred hhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc--Cccccceecccccccccc
Q 045580 532 YNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG--SLSEIRALNLSHNFLSGS 609 (764)
Q Consensus 532 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l~~~ 609 (764)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++
T Consensus 483 ---------------------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 483 ---------------------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp ---------------------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred ---------------------------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence 0012448999999999999 7999887 99999999999999997
Q ss_pred cCccccCCCCCCEEEC------cCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCC
Q 045580 610 IPQSLSNLKMIESLDL------SHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG 680 (764)
Q Consensus 610 ~p~~l~~l~~L~~LdL------s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~ 680 (764)
+|..++++++|+.|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|... +..++...+.+|+..|-
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 9999999999999999 56889999999999999999999999999 7888763 36778888899998764
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-42 Score=395.04 Aligned_cols=461 Identities=20% Similarity=0.204 Sum_probs=295.3
Q ss_pred CCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEc
Q 045580 73 KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL 152 (764)
Q Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l 152 (764)
..+++|+++|.+++ +|..+. ++|++|+|++|.+++..+.+|.++++|++|++++|++++. ++..|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEEC
Confidence 44889999999995 565554 8999999999999988888999999999999999998843 3356777777777666
Q ss_pred cCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCC-ccchHHhhcCCCCCEEEccCCcCc
Q 045580 153 SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQG-TFPSWLLQNNTKLDTLYLLNNSLS 231 (764)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~ 231 (764)
++|.+. .+|.. .+++|++|++++|++++ .+|.. +.++++|++|++++|.++
T Consensus 108 s~N~l~-------------------------~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 108 SHNRLQ-------------------------NISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TTSCCC-------------------------EECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCC
T ss_pred CCCcCC-------------------------ccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccc
Confidence 666543 33332 34445555555554442 11222 234445555555444443
Q ss_pred cCCCCCCCCCC--ccEEEccCCCC--CCCCChhHhhcCC-CCcEEEcccCCCCccCCc-cccCCCCCCEEECCCCc----
Q 045580 232 GNFQLPSSKHD--LLRIDISHNKF--SGQLPGNMGKILP-ELLSLNLSENGFEVRIPS-SMSEMKRLESLDLSSNN---- 301 (764)
Q Consensus 232 ~~~~~~~~~~~--L~~L~ls~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~---- 301 (764)
+. ....+++ |++|++++|.+ ++..|..+.. +. ..-.++++.|.+.+.++. .+..+++|+.+++++|.
T Consensus 160 ~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 160 QL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp TT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred cC--chhhhhhceeeEEEeecccccccccCcccccc-cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 21 1111222 25555555555 4444444322 21 111445666665554432 34456666666666663
Q ss_pred -ccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccc
Q 045580 302 -FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW 380 (764)
Q Consensus 302 -l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 380 (764)
+.+.++ . +..+++|+.++++++.+.+.. +.+ .+.. ...++|++|++++|.+++.+|..
T Consensus 237 ~l~~~~~-~-l~~l~~L~~L~L~~~~l~~~~-----------------~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~ 295 (562)
T 3a79_B 237 RLMTFLS-E-LTRGPTLLNVTLQHIETTWKC-----------------SVK-LFQF-FWPRPVEYLNIYNLTITERIDRE 295 (562)
T ss_dssp HHHHHHH-H-HHSCSSCEEEEEEEEEECHHH-----------------HHH-HHHH-HTTSSEEEEEEEEEEECSCCCCC
T ss_pred hHHHHHH-H-HhccCcceEEEecCCcCcHHH-----------------HHH-HHHh-hhcccccEEEEeccEeeccccch
Confidence 111111 1 345555555555554443211 110 0111 11235566666666665555555
Q ss_pred c-----cCCCCCCEEECcCCCCCCCCCCc-c----cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchh
Q 045580 381 F-----GNLSGLQFLDISENQLSGSVPSS-F----NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI 450 (764)
Q Consensus 381 ~-----~~l~~L~~L~L~~n~l~~~~~~~-~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 450 (764)
+ ..++.|+.+++..+.+ .+|.. + ...+|+.|++++|.+.... ....+++|++|++++|++++..|.
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~ 371 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ 371 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred hhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh
Confidence 4 4455555555555554 23311 1 2245777777777665322 125677888888888888887888
Q ss_pred hhhcCCCccEEEccCCcCCc--cCCccccCCCCCCEEeCCCCcCcCCcChh-hhcchhhcccccCCccccccccccchhh
Q 045580 451 WINEFSYLGILLLRGNQLKG--NIPNQLCHLSLLNILDLSYNKFNGPIPVC-FANVTLWTLGQAAGSFVLWETTQRISTE 527 (764)
Q Consensus 451 ~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 527 (764)
.++.+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-------------------------- 425 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-------------------------- 425 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--------------------------
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--------------------------
Confidence 88888888888888888885 33566788889999999999888755542 21
Q ss_pred HHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccc
Q 045580 528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS 607 (764)
Q Consensus 528 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 607 (764)
.+++|+.|++++|++++.+|..+. ++|+.|+|++|+++
T Consensus 426 ----------------------------------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 426 ----------------------------------------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp ----------------------------------------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred ----------------------------------------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 134788999999999888877665 78999999999998
Q ss_pred cccCccccCCCCCCEEECcCCcCcccCccc-ccCCCCCCeEeccCCccccCCCCCCC
Q 045580 608 GSIPQSLSNLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNAGQ 663 (764)
Q Consensus 608 ~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~~~~ 663 (764)
.+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++.|.||..+.
T Consensus 464 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 464 -SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp -CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 788888899999999999999994 6665 99999999999999999999986543
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-42 Score=404.43 Aligned_cols=357 Identities=18% Similarity=0.250 Sum_probs=302.5
Q ss_pred CCCCCCCChhHhhcCCCCcEEEcccCCCCc-----------------cCCcccc--CCCCCCEEECCCCcccccCchhhh
Q 045580 251 NKFSGQLPGNMGKILPELLSLNLSENGFEV-----------------RIPSSMS--EMKRLESLDLSSNNFSGELPRQFL 311 (764)
Q Consensus 251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~ 311 (764)
|++++ +|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l- 511 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL- 511 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-
Confidence 77776 8888765 9999999999999998 3888887 99999999999999998999765
Q ss_pred hCCCCCCEEEeeccc-ccc-ee---------ecCCCCCCceEEcccccCCCcccc--cccCCCCCCEEeCcCCccCCCcc
Q 045580 312 SGCFSLSFLSLSDNH-LQG-EV---------VFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIP 378 (764)
Q Consensus 312 ~~l~~L~~L~l~~n~-l~~-~~---------~~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~ 378 (764)
..+++|+.|++++|+ +++ .. .+..+++|+.|++++|.++ .+|. .+.++++|+.|++++|.++ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 789999999999998 776 22 2345569999999999999 7888 8999999999999999998 788
Q ss_pred ccccCCCCCCEEECcCCCCCCCCCCcc-cCCC-ccEEeccCCccccccchhhcCCCC--CCEEEccCCcCCCcchhh---
Q 045580 379 HWFGNLSGLQFLDISENQLSGSVPSSF-NLSS-LRRLYMHMNAFNGSIPGALRRSSS--LTVLDLRDNQFSGSIPIW--- 451 (764)
Q Consensus 379 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~--- 451 (764)
.|..+++|+.|++++|.++ .+|..+ .+++ |+.|++++|.++ .+|..+..++. |+.|++++|++++.+|..
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 8999999999999999999 677666 7888 999999999998 77877777654 999999999999876632
Q ss_pred hh--cCCCccEEEccCCcCCccCCccc-cCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhH
Q 045580 452 IN--EFSYLGILLLRGNQLKGNIPNQL-CHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEF 528 (764)
Q Consensus 452 ~~--~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (764)
+. .+++|+.|++++|+++ .+|..+ ..+++|+.|++++|+++ .+|..+......
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~---------------------- 722 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG---------------------- 722 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS----------------------
T ss_pred hccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc----------------------
Confidence 23 3458999999999999 566554 58999999999999998 666544321100
Q ss_pred HHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc--Cccccceeccccccc
Q 045580 529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG--SLSEIRALNLSHNFL 606 (764)
Q Consensus 529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l 606 (764)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++
T Consensus 723 ------------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 723 ------------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp ------------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC
Confidence 0012458999999999999 7899987 999999999999999
Q ss_pred ccccCccccCCCCCCEEECcC------CcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCC
Q 045580 607 SGSIPQSLSNLKMIESLDLSH------NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC 679 (764)
Q Consensus 607 ~~~~p~~l~~l~~L~~LdLs~------N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc 679 (764)
++ +|..++++++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|... +..++...+.+|+...
T Consensus 766 ~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp SS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred Cc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 97 899999999999999977 889999999999999999999999999 8899863 3577778888888643
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.7e-41 Score=386.54 Aligned_cols=525 Identities=21% Similarity=0.190 Sum_probs=379.5
Q ss_pred EEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCC
Q 045580 76 ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS 155 (764)
Q Consensus 76 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~ 155 (764)
+.+-++-.++ .+|..+. +++++|||++|+|++..+.+|.++++|++|+|++|+++ .++...|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence 3455555666 4565443 57999999999999888889999999999999999998 566678999999999999998
Q ss_pred CCC-CccccCCCCCCCCccEEEcCCCCCCCccH-hhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccC
Q 045580 156 LVK-IETEEFPGLPEYQLKALNLRNCSLHALPS-FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN 233 (764)
Q Consensus 156 ~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 233 (764)
.+. ++...|.. +++|++|++++|+++.+|. .++++++|++|++++|++++......+..+++|++|++++|.+++.
T Consensus 111 ~l~~l~~~~f~~--L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 111 PIQSLALGAFSG--LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCEECGGGGTT--CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCCCCCHHHhcC--CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 874 34444444 3468899999888887764 4778888899999888887432233345788888888888888754
Q ss_pred CCCC-----CCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCcc-CCccccCCCCCCEEECCCCcccc---
Q 045580 234 FQLP-----SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR-IPSSMSEMKRLESLDLSSNNFSG--- 304 (764)
Q Consensus 234 ~~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~--- 304 (764)
.... ........++++.|.+. .++...+. ...++.+++.+|..... .+..+..+..++...+..+....
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 2111 01123446777777776 44444433 34566677777654422 23345566666655543322111
Q ss_pred --cCchhhhhCCCCCCEEEeeccccccee-----ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc
Q 045580 305 --ELPRQFLSGCFSLSFLSLSDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI 377 (764)
Q Consensus 305 --~~p~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 377 (764)
......+.....+....+..+...... .+....+++.+.+..+.+.... .+.....++.|++.+|.+.+..
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcC
Confidence 111112233445555555444332211 3445667888888877765432 3556778888998888887543
Q ss_pred cccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccc--ccchhhcCCCCCCEEEccCCcCCCcchhhhhcC
Q 045580 378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNG--SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEF 455 (764)
Q Consensus 378 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 455 (764)
+. .+..|+.+++..|..... +....+++|+.++++.|.+.. ..+..+..+.+|+.+++..|.... .+..+..+
T Consensus 345 ~~---~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l 419 (635)
T 4g8a_A 345 TL---KLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL 419 (635)
T ss_dssp CC---BCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred cc---cchhhhhcccccccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence 32 456788888888876643 333378889999999887753 345666778889999998887763 45567788
Q ss_pred CCccEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhh
Q 045580 456 SYLGILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNS 534 (764)
Q Consensus 456 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (764)
++|+.+++.+|......+ ..+..+++++.++++.|.+.+..|..+..
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------- 467 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------- 467 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------
T ss_pred ccccchhhhhcccccccccccccccccccccccccccccccccccccc--------------------------------
Confidence 889999998887665543 45677888999999999887666554432
Q ss_pred hhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcc-cccCCccccCccccceecccccccccccCcc
Q 045580 535 TLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNEL-TGDIPSEIGSLSEIRALNLSHNFLSGSIPQS 613 (764)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~ 613 (764)
++.++.|++++|++ .+.+|..+..+++|+.|+|++|++++.+|..
T Consensus 468 ----------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 468 ----------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp ----------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ----------------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 34789999999985 4568889999999999999999999999999
Q ss_pred ccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCC-CCCCccccCCCCCCCCC
Q 045580 614 LSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQF-ANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 614 l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~-~~~~~~~~~gn~~lc~~ 681 (764)
|+++++|++|+|++|+|++..|..|..+++|++||+++|++++..|.. ..+ .+++...+.|||+.|..
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999999999999999999999999999999999999998875 233 56777889999999964
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.2e-41 Score=380.76 Aligned_cols=442 Identities=21% Similarity=0.230 Sum_probs=325.5
Q ss_pred ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580 64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN 143 (764)
Q Consensus 64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 143 (764)
+|..+. ++|++|+|++|.+++..+.+|.++++|++|+|++|++++..|.+|.++++|++|++++|+++ .+|.. .
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~ 119 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---P 119 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---C
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---c
Confidence 455443 89999999999999988899999999999999999999988999999999999999999998 56632 4
Q ss_pred CCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCc--cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCC-
Q 045580 144 HSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL--PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL- 220 (764)
Q Consensus 144 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~l--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L- 220 (764)
+++ |++|++++|+++.+ |..+.++++|++|++++|++++.. +..+++|
T Consensus 120 l~~-------------------------L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~ 170 (562)
T 3a79_B 120 MAS-------------------------LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLH 170 (562)
T ss_dssp CTT-------------------------CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSC
T ss_pred ccc-------------------------CCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhce
Confidence 444 55555555555443 467777888888888888876421 2344555
Q ss_pred -CEEEccCCcC--ccCCCCCCCCCCc----cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC----ccCCccccCC
Q 045580 221 -DTLYLLNNSL--SGNFQLPSSKHDL----LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE----VRIPSSMSEM 289 (764)
Q Consensus 221 -~~L~L~~n~l--~~~~~~~~~~~~L----~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~----~~~~~~l~~l 289 (764)
++|++++|.+ ++. .+..+..+ ..+++++|.+.+.++......+++|+.|++++|... ......+..+
T Consensus 171 L~~L~L~~n~l~~~~~--~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 171 LSCILLDLVSYHIKGG--ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp EEEEEEEESSCCCCSS--SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred eeEEEeeccccccccc--CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 8888888877 432 22222222 256788888887777766666889999999988521 1123457788
Q ss_pred CCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccc-----cCCCCCC
Q 045580 290 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL-----SKATSLL 364 (764)
Q Consensus 290 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~ 364 (764)
++|+.++++++.+.+.....+.. ....++|++|++++|.+++.+|..+ ..++.|+
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~--------------------~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQ--------------------FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHH--------------------HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred CcceEEEecCCcCcHHHHHHHHH--------------------hhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 89999999888776432221110 0011245555555555555555554 4555555
Q ss_pred EEeCcCCccCCCcc-ccccC---CCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEcc
Q 045580 365 ELDLSNNMLYGQIP-HWFGN---LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440 (764)
Q Consensus 365 ~L~L~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 440 (764)
.+++..+.+ .+| ..+.. ..+|++|++++|.+..... ...+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 309 ~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 309 IEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp EEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred hhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 555555555 233 22221 2568888888887753321 1257788889999998888888888999999999999
Q ss_pred CCcCCC--cchhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccc
Q 045580 441 DNQFSG--SIPIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVL 517 (764)
Q Consensus 441 ~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~ 517 (764)
+|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+.
T Consensus 386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---------------- 449 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---------------- 449 (562)
T ss_dssp SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC----------------
T ss_pred CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc----------------
Confidence 999986 3456788999999999999999975654 578899999999999999865553221
Q ss_pred ccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc
Q 045580 518 WETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR 597 (764)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 597 (764)
+.|+.|+|++|+++ .+|..+..+++|+
T Consensus 450 ----------------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~ 476 (562)
T 3a79_B 450 ----------------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476 (562)
T ss_dssp ----------------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred ----------------------------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence 37899999999999 7888888999999
Q ss_pred eecccccccccccCcc-ccCCCCCCEEECcCCcCcccCc
Q 045580 598 ALNLSHNFLSGSIPQS-LSNLKMIESLDLSHNDLSGQIP 635 (764)
Q Consensus 598 ~L~Ls~N~l~~~~p~~-l~~l~~L~~LdLs~N~l~~~ip 635 (764)
.|+|++|+++ .+|.. ++.+++|+.|++++|++.+..|
T Consensus 477 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 477 ELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999999 56665 9999999999999999997665
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-41 Score=370.95 Aligned_cols=321 Identities=24% Similarity=0.256 Sum_probs=153.8
Q ss_pred CCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcE
Q 045580 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQV 149 (764)
Q Consensus 70 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 149 (764)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.++|.+|..++++++|+++++.+|..
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------------- 70 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------------- 70 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------------
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------------
Confidence 346666666666666 45666666666666666666666666666666555554444433310
Q ss_pred EEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCc
Q 045580 150 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS 229 (764)
Q Consensus 150 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 229 (764)
.++++|++++|.++.+|.. .++|++|++++|++++ +|. ..++|++|++++|.
T Consensus 71 --------------------~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 71 --------------------RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNN 122 (454)
T ss_dssp --------------------HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSC
T ss_pred --------------------cCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCc
Confidence 1366666677766666652 3567788888887774 554 24667777777777
Q ss_pred CccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchh
Q 045580 230 LSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309 (764)
Q Consensus 230 l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 309 (764)
+++.... .++|++|++++|+++ .+|. +. .+++|++|++++|++++ +|..+ ++|++|++++|.+.+ +|.
T Consensus 123 l~~l~~~---~~~L~~L~L~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~- 190 (454)
T 1jl5_A 123 LKALSDL---PPLLEYLGVSNNQLE-KLPE-LQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPE- 190 (454)
T ss_dssp CSCCCSC---CTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCC-
T ss_pred cCcccCC---CCCCCEEECcCCCCC-CCcc-cC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Ccc-
Confidence 6643221 245666666666665 3552 32 36666666666666653 44332 356666666666653 442
Q ss_pred hhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCE
Q 045580 310 FLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQF 389 (764)
Q Consensus 310 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 389 (764)
+..+++|+.|++++|.+++.... .++|++|++++|.++ .+|. +..+++|++
T Consensus 191 -~~~l~~L~~L~l~~N~l~~l~~~--------------------------~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~ 241 (454)
T 1jl5_A 191 -LQNLPFLTAIYADNNSLKKLPDL--------------------------PLSLESIVAGNNILE-ELPE-LQNLPFLTT 241 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSSCCCC--------------------------CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred -ccCCCCCCEEECCCCcCCcCCCC--------------------------cCcccEEECcCCcCC-cccc-cCCCCCCCE
Confidence 34555555555555555432211 124444555544444 3332 444445555
Q ss_pred EECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCC
Q 045580 390 LDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK 469 (764)
Q Consensus 390 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 469 (764)
|++++|++++ +|.. .++|+.|++++|++++ +|.. +++|+.|++++|++++ +|. -.++|++|++++|+++
T Consensus 242 L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 242 IYADNNLLKT-LPDL--PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIR 310 (454)
T ss_dssp EECCSSCCSS-CCSC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCS
T ss_pred EECCCCcCCc-cccc--ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCC
Confidence 5555554443 1211 2445555555554443 2221 2455555555555553 111 0135555555555555
Q ss_pred ccCCccccCC-CCCCEEeCCCCcCc
Q 045580 470 GNIPNQLCHL-SLLNILDLSYNKFN 493 (764)
Q Consensus 470 ~~~~~~~~~l-~~L~~L~Ls~n~l~ 493 (764)
+ ++ .+ ++|++|++++|+++
T Consensus 311 ~-i~----~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 311 S-LC----DLPPSLEELNVSNNKLI 330 (454)
T ss_dssp E-EC----CCCTTCCEEECCSSCCS
T ss_pred c-cc----CCcCcCCEEECCCCccc
Confidence 3 11 12 35555565555554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-39 Score=357.59 Aligned_cols=374 Identities=20% Similarity=0.175 Sum_probs=316.2
Q ss_pred CCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccC-CccccCCCCCCEEECC
Q 045580 220 LDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI-PSSMSEMKRLESLDLS 298 (764)
Q Consensus 220 L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls 298 (764)
-+.++.+++.++..+. -.++|++|++++|.+.+..|..+. .+++|++|++++|.+.+.+ +..|..+++|++|+++
T Consensus 12 ~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3467777887776544 447899999999999865566665 4999999999999987554 5679999999999999
Q ss_pred CCcccccCchhhhhCCCCCCEEEeeccccccee----ecCCCCCCceEEcccccCCCccccc-ccCCCCCCEEeCcCCcc
Q 045580 299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNML 373 (764)
Q Consensus 299 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l 373 (764)
+|.+.+..|.. +.++++|++|++++|.+++.. .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99998555655 478999999999999998733 3888999999999999999887776 88999999999999999
Q ss_pred CCCccccccCC--CCCCEEECcCCCCCCCCCCcc---------cCCCccEEeccCCccccccchhhcCC---CCCCEEEc
Q 045580 374 YGQIPHWFGNL--SGLQFLDISENQLSGSVPSSF---------NLSSLRRLYMHMNAFNGSIPGALRRS---SSLTVLDL 439 (764)
Q Consensus 374 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~L 439 (764)
.+..+..+..+ .+|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98888888776 789999999999987655432 45789999999999998888776543 89999999
Q ss_pred cCCcCCCcc----------hhhhhc--CCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhc
Q 045580 440 RDNQFSGSI----------PIWINE--FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT 507 (764)
Q Consensus 440 ~~n~l~~~~----------p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~ 507 (764)
++|.+.+.. +..+.. .++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----- 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence 998655421 122222 368999999999999988999999999999999999998776766544
Q ss_pred ccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCC
Q 045580 508 LGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIP 587 (764)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 587 (764)
+++|+.|+|++|++++..|
T Consensus 322 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 322 -------------------------------------------------------------LTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred -------------------------------------------------------------cccCCEEECCCCccCCcCh
Confidence 3479999999999998889
Q ss_pred ccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCC
Q 045580 588 SEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQF 664 (764)
Q Consensus 588 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~ 664 (764)
..++.+++|+.|+|++|++++..|..++++++|++|+|++|++++..+..+..+++|++|++++|+++|.||....+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 99999999999999999999888999999999999999999999877778899999999999999999999975433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-38 Score=348.86 Aligned_cols=378 Identities=21% Similarity=0.212 Sum_probs=239.1
Q ss_pred EEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCC--CCCCCCCCccEEEccCC
Q 045580 174 ALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRIDISHN 251 (764)
Q Consensus 174 ~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~ls~n 251 (764)
.++.+++.++.+|. + .++|++|++++|++++..|.. +.++++|++|++++|.+.+.. .....+++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 44555555555554 1 245666666666665333332 235555555555555543221 11223444455555555
Q ss_pred CCCCCCChhHhhcCCCCcEEEcccCCCCccCCcc--ccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580 252 KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSS--MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329 (764)
Q Consensus 252 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 329 (764)
++.+..|..+.. +++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+
T Consensus 90 ~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 444333433332 555555555555555433322 55555555555555555544444444455555555555555544
Q ss_pred ee--ecCCC--CCCceEEcccccCCCccccc--------ccCCCCCCEEeCcCCccCCCccccccCC---CCCCEEECcC
Q 045580 330 EV--VFPNS--TNLCWLYLNNNHFSGKIQDG--------LSKATSLLELDLSNNMLYGQIPHWFGNL---SGLQFLDISE 394 (764)
Q Consensus 330 ~~--~~~~~--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~ 394 (764)
.. .+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 32 12221 45555666665555433322 2244566666666666655555544332 5566666666
Q ss_pred CCCCCCCCCcccCCCccEEeccCCccccccchhhc--CCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccC
Q 045580 395 NQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALR--RSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNI 472 (764)
Q Consensus 395 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 472 (764)
|...+..... +.+.+..+..+. ..++|+.|++++|++++..|..++.+++|++|++++|++++..
T Consensus 249 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 249 SYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp CTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccccch-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 6544322111 111111122222 2468999999999999888999999999999999999999888
Q ss_pred CccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccc
Q 045580 473 PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRG 552 (764)
Q Consensus 473 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 552 (764)
|..+..+++|++|++++|.+++..|..+..
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------- 345 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-------------------------------------------------- 345 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------------------------------
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------------------------------
Confidence 889999999999999999998766655543
Q ss_pred eEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580 553 IEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632 (764)
Q Consensus 553 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 632 (764)
+++|+.|+|++|++++..|..++.+++|+.|+|++|++++..+..++.+++|+.|++++|++++
T Consensus 346 ----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 346 ----------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp ----------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 3479999999999998889999999999999999999998777788999999999999999999
Q ss_pred cCc
Q 045580 633 QIP 635 (764)
Q Consensus 633 ~ip 635 (764)
.+|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 887
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.9e-38 Score=345.62 Aligned_cols=378 Identities=22% Similarity=0.260 Sum_probs=264.3
Q ss_pred CCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCC-------------CCEEEccCCcCccCCC
Q 045580 169 EYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTK-------------LDTLYLLNNSLSGNFQ 235 (764)
Q Consensus 169 ~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~ 235 (764)
.++|++|++++|.++.+|..++++++|++|++++|++.|.+|..+. ++++ +++|++++|.+++.+.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 3569999999999999999999999999999999999888887654 4544 5999999999887543
Q ss_pred CCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCC
Q 045580 236 LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF 315 (764)
Q Consensus 236 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~ 315 (764)
..++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|.+. .+|. +..++
T Consensus 89 ---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~ 153 (454)
T 1jl5_A 89 ---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNSS 153 (454)
T ss_dssp ---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTCT
T ss_pred ---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCCC
Confidence 34789999999999985 7753 5789999999998885 3322 268999999999998 4883 57899
Q ss_pred CCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCC
Q 045580 316 SLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395 (764)
Q Consensus 316 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 395 (764)
+|++|++++|++++.... .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 154 ~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN 225 (454)
T ss_dssp TCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred CCCEEECCCCcCcccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence 999999999998875432 3589999999999986 45 58899999999999999885 4443 258999999999
Q ss_pred CCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcc
Q 045580 396 QLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQ 475 (764)
Q Consensus 396 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 475 (764)
.++ .+|....+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|.. .++|++|++++|++++ +|..
T Consensus 226 ~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~ 295 (454)
T 1jl5_A 226 ILE-ELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL 295 (454)
T ss_dssp CCS-SCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC
T ss_pred cCC-cccccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc
Confidence 988 56653388999999999999885 443 24789999999999885 5543 3789999999999886 2221
Q ss_pred ccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEE
Q 045580 476 LCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEF 555 (764)
Q Consensus 476 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 555 (764)
.++|+.|++++|++++ ++.
T Consensus 296 ---~~~L~~L~l~~N~l~~-i~~--------------------------------------------------------- 314 (454)
T 1jl5_A 296 ---PPNLYYLNASSNEIRS-LCD--------------------------------------------------------- 314 (454)
T ss_dssp ---CTTCCEEECCSSCCSE-ECC---------------------------------------------------------
T ss_pred ---CCcCCEEECcCCcCCc-ccC---------------------------------------------------------
Confidence 2688999999998864 110
Q ss_pred eeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc--c
Q 045580 556 MTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG--Q 633 (764)
Q Consensus 556 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~--~ 633 (764)
..++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .
T Consensus 315 ------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 315 ------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp ------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred ------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCC
Confidence 02368899999999986 6664 578999999999998 5776 47899999999999998 7
Q ss_pred CcccccCC-------------CCCCeEeccCCcccc--CCCCC
Q 045580 634 IPPQLTEL-------------NFLSNFNVSYNHLSG--PTPNA 661 (764)
Q Consensus 634 ip~~l~~l-------------~~L~~L~ls~N~l~g--~~p~~ 661 (764)
+|.++..+ ++|++||+++|+++| .+|..
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp CCTTCCEEECCC-------------------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 88888887 889999999999998 77754
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=340.28 Aligned_cols=346 Identities=19% Similarity=0.208 Sum_probs=256.3
Q ss_pred cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEee
Q 045580 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323 (764)
Q Consensus 244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~ 323 (764)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.+..|.. +.++++|++|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L- 87 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGL- 87 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEC-
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEEC-
Confidence 35666666666 667654 357788888888887777777888888888888888777433433 344554444444
Q ss_pred cccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCC
Q 045580 324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS 403 (764)
Q Consensus 324 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 403 (764)
++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus 88 ---------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 88 ---------------------RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp ---------------------CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred ---------------------CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence 44444444444566666677777777766666666666777777777777777666665
Q ss_pred cc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580 404 SF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482 (764)
Q Consensus 404 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 482 (764)
.+ .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 55 66777777777777776666677888888888888888887767778888888888888888777777766666788
Q ss_pred CEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc
Q 045580 483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE 562 (764)
Q Consensus 483 ~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 562 (764)
+.|++++|++++..+..+..
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~------------------------------------------------------------ 246 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRH------------------------------------------------------------ 246 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTT------------------------------------------------------------
T ss_pred cEEECcCCcccccCHHHhcC------------------------------------------------------------
Confidence 99999988887433233332
Q ss_pred cccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC
Q 045580 563 SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN 642 (764)
Q Consensus 563 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 642 (764)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..|..++
T Consensus 247 ------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 247 ------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320 (477)
T ss_dssp ------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG
T ss_pred ------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc
Confidence 34788899999999888888889999999999999999988899999999999999999999988778888999
Q ss_pred CCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 045580 643 FLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR 682 (764)
Q Consensus 643 ~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~ 682 (764)
+|+.|++++|++.|.++..+.+.......+.++...|..|
T Consensus 321 ~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 321 NLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred ccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999999999999988765544444445567777778654
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.2e-36 Score=329.07 Aligned_cols=289 Identities=18% Similarity=0.123 Sum_probs=171.4
Q ss_pred CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 344 (764)
Q Consensus 265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L 344 (764)
+++|++|++++|.+++ +| ++.+++|++|++++|++.+ ++ +..+++|++|++++|...+...+..+++|++|++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 4444444444444443 22 4444455555555554442 22 2344455555555553333334445555555555
Q ss_pred ccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc
Q 045580 345 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424 (764)
Q Consensus 345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 424 (764)
++|.+++. + +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| ...+++|+.|++++|++++..
T Consensus 178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC
Confidence 55555542 2 45556666666666666543 25556666666666666665 23 225566666666666666532
Q ss_pred chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580 425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504 (764)
Q Consensus 425 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 504 (764)
+..+++|+.|++++| +|+.|++++|++.+.+| +..+++|+.|++++|...+.+|.....+.
T Consensus 250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce
Confidence 234556666666554 24455666666665555 34566677777777766665553222111
Q ss_pred hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580 505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG 584 (764)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 584 (764)
... -..++.|+.|++++|++++
T Consensus 311 ~L~----------------------------------------------------------l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 311 ELD----------------------------------------------------------LSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CCC----------------------------------------------------------CTTCTTCCEEECTTCCCSC
T ss_pred Eec----------------------------------------------------------hhhcccCCEEECCCCcccc
Confidence 000 0113478889999999997
Q ss_pred cCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 585 DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 585 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
++ ++++++|+.|++++|++++ ++.|+.|++++|.++|. ..+..|..+++++|+++|.+|..
T Consensus 333 -l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 333 -LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 43 8899999999999999985 24667788999999886 24456788899999999999975
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.9e-35 Score=324.87 Aligned_cols=344 Identities=26% Similarity=0.339 Sum_probs=251.2
Q ss_pred CCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECC
Q 045580 219 KLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS 298 (764)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 298 (764)
+++.|++.++.+.... ....+++|++|++++|.+. .++. + ..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCccCc-chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 3444444444443321 1123444555555555554 3333 3 336777777777777764433 6777777777777
Q ss_pred CCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcc
Q 045580 299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP 378 (764)
Q Consensus 299 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 378 (764)
+|.+. .++. +..+++|++|++++|.+.+...+..+++|+.|+++ |.+.+.. .+.++++|++|++++|.+.+.
T Consensus 121 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~-- 192 (466)
T 1o6v_A 121 NNQIT-DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI-- 192 (466)
T ss_dssp SSCCC-CCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--
T ss_pred CCCCC-CChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--
Confidence 77776 3443 46677777777777777766667777777777775 3444332 277788888888888887643
Q ss_pred ccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCc
Q 045580 379 HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458 (764)
Q Consensus 379 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 458 (764)
..+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+.+. ..+..+++|+.|++++|++++..+ +..+++|
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence 347778888888888888876655 23678888888888888754 357788899999999999986655 7888999
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhc
Q 045580 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLEL 538 (764)
Q Consensus 459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (764)
++|++++|++++..+ +..+++|+.|++++|++++..| +.
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------------------------------------- 306 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------------------------------------- 306 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-------------------------------------
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-------------------------------------
Confidence 999999999986444 7888999999999998875433 21
Q ss_pred cccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCC
Q 045580 539 SEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLK 618 (764)
Q Consensus 539 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 618 (764)
.+++|+.|++++|++++..| ++.+++|+.|++++|++++. ..+++++
T Consensus 307 -----------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 307 -----------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp -----------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred -----------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence 14578999999999997665 78999999999999999865 4788999
Q ss_pred CCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580 619 MIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP 657 (764)
Q Consensus 619 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 657 (764)
+|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999999999998777 88999999999999999983
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-35 Score=324.95 Aligned_cols=368 Identities=19% Similarity=0.190 Sum_probs=253.0
Q ss_pred cccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccc
Q 045580 83 NLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETE 162 (764)
Q Consensus 83 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 162 (764)
...+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++ ++ ++.+++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~---------------- 86 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTN---------------- 86 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTT----------------
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCC----------------
Confidence 34445556778888899999998888864 4 68888888888888888774 22 333333
Q ss_pred cCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCC
Q 045580 163 EFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 242 (764)
Q Consensus 163 ~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 242 (764)
|++|++++|.++.+| +..+++|++|++++|++++ +| +..+++|++|++++|.+++. ....
T Consensus 87 ---------L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l--~l~~--- 146 (457)
T 3bz5_A 87 ---------LTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI--DVSH--- 146 (457)
T ss_dssp ---------CSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC--CCTT---
T ss_pred ---------CCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee--cccc---
Confidence 555555556665554 6677888888888888874 44 45777777777777777653 1233
Q ss_pred ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580 243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 322 (764)
Q Consensus 243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l 322 (764)
+++|++|++++|...+.+ .+..+++|++|++++|++. .+| +..+++|+.|++
T Consensus 147 ----------------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l 198 (457)
T 3bz5_A 147 ----------------------NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNC 198 (457)
T ss_dssp ----------------------CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEEC
T ss_pred ----------------------CCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec---cccCCCCCEEEC
Confidence 444555555555333222 2445555555555555555 244 245555566666
Q ss_pred ecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC
Q 045580 323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP 402 (764)
Q Consensus 323 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 402 (764)
++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++.. +..+++|+.|++++|+
T Consensus 199 ~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~------ 265 (457)
T 3bz5_A 199 DTNNITKL-DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD------ 265 (457)
T ss_dssp CSSCCSCC-CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC------
T ss_pred cCCcCCee-ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC------
Confidence 65555544 35566777777777777776 34 677788888888888887643 4567778888877653
Q ss_pred CcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580 403 SSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482 (764)
Q Consensus 403 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 482 (764)
|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ..++|+.|++++| ++|
T Consensus 266 -------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L 320 (457)
T 3bz5_A 266 -------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKL 320 (457)
T ss_dssp -------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTC
T ss_pred -------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccC
Confidence 5667788888777776 46788899999999988777774 3355665555544 688
Q ss_pred CEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc
Q 045580 483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE 562 (764)
Q Consensus 483 ~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 562 (764)
+.|++++|++++. + +++
T Consensus 321 ~~L~L~~N~l~~l-~--l~~------------------------------------------------------------ 337 (457)
T 3bz5_A 321 VYLYLNNTELTEL-D--VSH------------------------------------------------------------ 337 (457)
T ss_dssp CEEECTTCCCSCC-C--CTT------------------------------------------------------------
T ss_pred CEEECCCCccccc-c--ccc------------------------------------------------------------
Confidence 9999999998862 2 222
Q ss_pred cccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccC
Q 045580 563 SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE 640 (764)
Q Consensus 563 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 640 (764)
++.|+.||+++|++++ ++.|..|++++|+++|. +.+..|+.+++++|+++|.+|..+..
T Consensus 338 ------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 338 ------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ------CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 4478899999999985 35677888999999876 35667888999999999999976544
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-35 Score=322.96 Aligned_cols=343 Identities=29% Similarity=0.361 Sum_probs=239.8
Q ss_pred CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccC
Q 045580 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH 250 (764)
Q Consensus 171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~ 250 (764)
+++.|++.++.+..+|. +..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+.
T Consensus 47 ~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~----------------- 105 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADI----------------- 105 (466)
T ss_dssp TCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC-----------------
T ss_pred cccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccC-----------------
Confidence 46666666666666653 5566677777777777663 333 34666666666666665533
Q ss_pred CCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce
Q 045580 251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330 (764)
Q Consensus 251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 330 (764)
+. + ..+++|++|++++|.+++.. .+..+++|++|++++|.+. .++. +..+++|+.|+++ +.+.+.
T Consensus 106 -------~~-~-~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~ 170 (466)
T 1o6v_A 106 -------TP-L-ANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL 170 (466)
T ss_dssp -------GG-G-TTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC
T ss_pred -------hh-h-cCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc
Confidence 22 2 22555666666666555332 2556666666666666655 3332 3556666666664 344444
Q ss_pred eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCc
Q 045580 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL 410 (764)
Q Consensus 331 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L 410 (764)
..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. +....+++|
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 245 (466)
T 1o6v_A 171 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNL 245 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCC
Confidence 4566667777777777776643 236777788888888887776544 66677888888888877753 332367888
Q ss_pred cEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCC
Q 045580 411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN 490 (764)
Q Consensus 411 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 490 (764)
+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred CEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC
Confidence 888888888876654 7788889999999998886544 7788899999999999886544 778899999999999
Q ss_pred cCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccc
Q 045580 491 KFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN 570 (764)
Q Consensus 491 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 570 (764)
++++..| +.. ++
T Consensus 320 ~l~~~~~--~~~------------------------------------------------------------------l~ 331 (466)
T 1o6v_A 320 NISDISP--VSS------------------------------------------------------------------LT 331 (466)
T ss_dssp CCSCCGG--GGG------------------------------------------------------------------CT
T ss_pred cCCCchh--hcc------------------------------------------------------------------Cc
Confidence 8876544 211 45
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 632 (764)
+|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 788999999999864 468899999999999999998877 8899999999999999986
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.2e-35 Score=304.97 Aligned_cols=258 Identities=34% Similarity=0.575 Sum_probs=219.8
Q ss_pred CCCCEEeCcCCccCC--CccccccCCCCCCEEECcC-CCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCE
Q 045580 361 TSLLELDLSNNMLYG--QIPHWFGNLSGLQFLDISE-NQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTV 436 (764)
Q Consensus 361 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 436 (764)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+ .+++|++|++++|.+++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666666666 5666667777777777773 66666666666 6777777777777777777888888889999
Q ss_pred EEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCC-CCCEEeCCCCcCcCCcChhhhcchhhcccccCCcc
Q 045580 437 LDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS-LLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSF 515 (764)
Q Consensus 437 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~ 515 (764)
|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~------------- 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------------- 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------
Confidence 99999998888888899999999999999999888898898887 9999999999998888776643
Q ss_pred ccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccc
Q 045580 516 VLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSE 595 (764)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 595 (764)
+ .|+.|++++|++++.+|..++.+++
T Consensus 197 -----------------------------------------------------l-~L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 197 -----------------------------------------------------L-NLAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp -----------------------------------------------------C-CCSEEECCSSEEEECCGGGCCTTSC
T ss_pred -----------------------------------------------------C-cccEEECcCCcccCcCCHHHhcCCC
Confidence 2 2888999999999999999999999
Q ss_pred cceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCC
Q 045580 596 IRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN 675 (764)
Q Consensus 596 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn 675 (764)
|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..++...+.||
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence 99999999999977776 88999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCCCCCCCCCC
Q 045580 676 SGLCGPRINKSC 687 (764)
Q Consensus 676 ~~lc~~~~~~~c 687 (764)
+++||.|+. .|
T Consensus 302 ~~lc~~p~~-~C 312 (313)
T 1ogq_A 302 KCLCGSPLP-AC 312 (313)
T ss_dssp SEEESTTSS-CC
T ss_pred CCccCCCCC-CC
Confidence 999998765 46
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-33 Score=305.92 Aligned_cols=334 Identities=22% Similarity=0.228 Sum_probs=220.0
Q ss_pred CCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCE
Q 045580 240 KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 319 (764)
Q Consensus 240 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 319 (764)
+.+++.|++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 456677777777766 677776666888888888888888777778888888888888888887 444444456666666
Q ss_pred EEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCC
Q 045580 320 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 320 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
|++++|.++... +..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 122 L~L~~n~l~~l~----------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 122 LVLERNDLSSLP----------------------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred EECCCCccCcCC----------------------HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 666666555333 2333444455555555555544444444555555555555555443
Q ss_pred CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479 (764)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 479 (764)
.. ...+++|+.|++++|.+.+ +...++|+.|++++|+++.. |. ...++|+.|++++|++++. ..+..+
T Consensus 180 ~~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 180 VD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp CC--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred cc--cccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCC
Confidence 21 1134555555555555442 12334666666666666532 32 2235677777777777643 456677
Q ss_pred CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580 480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK 559 (764)
Q Consensus 480 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 559 (764)
++|++|++++|.+++..|..+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------------------------- 270 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVK--------------------------------------------------------- 270 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTT---------------------------------------------------------
T ss_pred CCccEEECCCCcCCCcChhHccc---------------------------------------------------------
Confidence 77777777777777655554433
Q ss_pred ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580 560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT 639 (764)
Q Consensus 560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~ 639 (764)
+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+++|+.|++++|+++.. | +.
T Consensus 271 ---------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~ 336 (390)
T 3o6n_A 271 ---------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS 336 (390)
T ss_dssp ---------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred ---------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence 3367778888887774 5666778889999999999998 6777788899999999999999854 3 67
Q ss_pred CCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q 045580 640 ELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 640 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~ 681 (764)
.+++|+.|++++|++.|.+... .+..+....+.+++..|..
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCT
T ss_pred hhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceecc
Confidence 8889999999999999865432 2444555556677766753
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=312.22 Aligned_cols=328 Identities=21% Similarity=0.216 Sum_probs=193.9
Q ss_pred CCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEE
Q 045580 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL 320 (764)
Q Consensus 241 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 320 (764)
++++.|++++|++++..+..+ ..+++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|...+.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 356666666666663334444 34888999999999988888888999999999999999887 6776655667777777
Q ss_pred Eeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCC
Q 045580 321 SLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS 398 (764)
Q Consensus 321 ~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 398 (764)
++++|.+.+.. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 76666665433 3445555555555555555555555555555555555555555444444555555555555555554
Q ss_pred CCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccC
Q 045580 399 GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478 (764)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 478 (764)
+. .+..|..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..
T Consensus 190 ~~-----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 190 AI-----------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp EE-----------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred Ee-----------------------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 43 3344444555555555555544444444444445555555555555333344555
Q ss_pred CCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeec
Q 045580 479 LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTK 558 (764)
Q Consensus 479 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 558 (764)
+++|+.|++++|++++..+..+..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------------------- 270 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHE-------------------------------------------------------- 270 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTT--------------------------------------------------------
T ss_pred ccccCeeECCCCcCCccChhhccc--------------------------------------------------------
Confidence 556666666666555433322221
Q ss_pred cccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccc
Q 045580 559 KRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQL 638 (764)
Q Consensus 559 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l 638 (764)
++.|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..+. .
T Consensus 271 ----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~ 339 (477)
T 2id5_A 271 ----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-L 339 (477)
T ss_dssp ----------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-H
T ss_pred ----------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-H
Confidence 23566666666666666666666677777777777777665555666677777777777776643221 1
Q ss_pred cCCCCCCeEeccCCccccCCCC
Q 045580 639 TELNFLSNFNVSYNHLSGPTPN 660 (764)
Q Consensus 639 ~~l~~L~~L~ls~N~l~g~~p~ 660 (764)
.-......+++.++...|..|.
T Consensus 340 ~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 340 WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp HHHTTTTSSCCTTCCCBEEESG
T ss_pred hHHhhhhccccCccCceeCCch
Confidence 1112233445555655555553
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-33 Score=321.14 Aligned_cols=335 Identities=22% Similarity=0.226 Sum_probs=234.7
Q ss_pred CCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCE
Q 045580 240 KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 319 (764)
Q Consensus 240 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 319 (764)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+.+++|++|++++|.+.+ +|...+..+++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence 455666777777666 6777766668888888888888887777788888888888888888874 44444455666655
Q ss_pred EEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCC
Q 045580 320 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 320 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
|++++|.++ +..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++
T Consensus 128 L~L~~n~l~----------------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 128 LVLERNDLS----------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEeeCCCCC----------------------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 555555554 3333344555555566666555555555555556666666666665554
Q ss_pred CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479 (764)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 479 (764)
... ..+++|+.|++++|.+.+ +...++|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+..+
T Consensus 186 ~~~--~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 186 VDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp CCG--GGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred cCh--hhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccC
Confidence 321 134556666666665553 23345677777777777633 2221 2577788888887775 3567777
Q ss_pred CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580 480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK 559 (764)
Q Consensus 480 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 559 (764)
++|+.|++++|.+++..|..+..
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------------------- 276 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVK--------------------------------------------------------- 276 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTT---------------------------------------------------------
T ss_pred CCCCEEECCCCccCCCCHHHhcC---------------------------------------------------------
Confidence 88888888888887766665543
Q ss_pred ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580 560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT 639 (764)
Q Consensus 560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~ 639 (764)
+++|+.|+|++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. | +.
T Consensus 277 ---------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~ 342 (597)
T 3oja_B 277 ---------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS 342 (597)
T ss_dssp ---------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred ---------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hh
Confidence 3367888888888875 6777788899999999999998 6888889999999999999999865 3 67
Q ss_pred CCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 045580 640 ELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR 682 (764)
Q Consensus 640 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~ 682 (764)
.++.|+.|++++|+++|.++.. .+..+....+.+++..|+.+
T Consensus 343 ~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred hcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 7889999999999999876543 35566667788888889853
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-32 Score=291.02 Aligned_cols=304 Identities=24% Similarity=0.359 Sum_probs=220.5
Q ss_pred CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 344 (764)
Q Consensus 265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L 344 (764)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+++...+..+++|++|++
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 5566666666666653 23 3566666666666666665 3443 4566666666666666665556666777777777
Q ss_pred ccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc
Q 045580 345 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424 (764)
Q Consensus 345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 424 (764)
++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+.+..
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence 7777765433 6777788888888775554433 37777888888888887775444 236778888888888877543
Q ss_pred chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580 425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504 (764)
Q Consensus 425 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 504 (764)
+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. + .+.
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~--- 262 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVK--- 262 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGT---
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHh---
Confidence 3 7778888888888888886544 7788888888888888885433 77888899999998887642 1 111
Q ss_pred hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580 505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG 584 (764)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 584 (764)
.+++|+.|++++|++++
T Consensus 263 ---------------------------------------------------------------~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 263 ---------------------------------------------------------------DLTKLKMLNVGSNQISD 279 (347)
T ss_dssp ---------------------------------------------------------------TCTTCCEEECCSSCCCC
T ss_pred ---------------------------------------------------------------cCCCcCEEEccCCccCC
Confidence 14578889999998885
Q ss_pred cCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccc
Q 045580 585 DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655 (764)
Q Consensus 585 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 655 (764)
. +.+..+++|+.|++++|++++..|..++.+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 3 458888999999999999998888889999999999999999987666 888999999999999875
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-31 Score=285.56 Aligned_cols=282 Identities=24% Similarity=0.342 Sum_probs=213.4
Q ss_pred CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 344 (764)
Q Consensus 265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L 344 (764)
+++|++|++++|.+++. +. +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+...+..+++|+.|++
T Consensus 65 ~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISPLANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCCEEECcCCcccCchhhccCCceeEEEC
Confidence 66666666666666532 22 666666777777766665 3442 4566677777777776666555667777777777
Q ss_pred ccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc
Q 045580 345 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424 (764)
Q Consensus 345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 424 (764)
++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ ...+++|+.+++++|.+.+..
T Consensus 140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence 7775554433 37788888888888888875433 7788888888888888875443 337888888999888887655
Q ss_pred chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580 425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504 (764)
Q Consensus 425 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 504 (764)
+ +..+++|++|++++|++++..+ +..+++|++|++++|++++. +.+..+++|+.|++++|++++. | .+.
T Consensus 216 ~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~--- 284 (347)
T 4fmz_A 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN--- 284 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG---
T ss_pred h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc---
Confidence 4 7788999999999999986544 88899999999999998853 4688899999999999988753 2 111
Q ss_pred hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580 505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG 584 (764)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 584 (764)
.+++|+.|++++|++++
T Consensus 285 ---------------------------------------------------------------~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 285 ---------------------------------------------------------------NLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp ---------------------------------------------------------------GCTTCSEEECCSSCCCG
T ss_pred ---------------------------------------------------------------CCCCCCEEECcCCcCCC
Confidence 14579999999999998
Q ss_pred cCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580 585 DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631 (764)
Q Consensus 585 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 631 (764)
..|..++.+++|+.|++++|++++..| ++.+++|+.||+++|.++
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 889999999999999999999997766 889999999999999986
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.3e-32 Score=290.85 Aligned_cols=310 Identities=21% Similarity=0.222 Sum_probs=178.6
Q ss_pred CCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcE
Q 045580 70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQV 149 (764)
Q Consensus 70 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 149 (764)
.++++++|++++|.++...+..|..+++|++|+|++|.+++..+..|+++++|++|++++|++++. +...++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCE
Confidence 468899999999998877667788899999999999999887778899999999999999988743 3344555555444
Q ss_pred EEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHh-hhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCC
Q 045580 150 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF-LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228 (764)
Q Consensus 150 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 228 (764)
|+ +++|.++.+|.. +..+++|++|++++|++++ ++...+..+++|++|++++|
T Consensus 122 L~-------------------------L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 122 LV-------------------------LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp EE-------------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSS
T ss_pred EE-------------------------CCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCC
Confidence 44 444445555544 3566677777777777763 33323345566666666555
Q ss_pred cCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCch
Q 045580 229 SLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308 (764)
Q Consensus 229 ~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 308 (764)
.+++. +. ..+++|+.|++++|.+++ +...++|++|++++|.+. .+|.
T Consensus 176 ~l~~~------------------------~~---~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~ 222 (390)
T 3o6n_A 176 RLTHV------------------------DL---SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRG 222 (390)
T ss_dssp CCSBC------------------------CG---GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC-EEEC
T ss_pred cCCcc------------------------cc---ccccccceeecccccccc-----cCCCCcceEEECCCCeee-eccc
Confidence 55432 11 124556666666665542 223345666666666665 3333
Q ss_pred hhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCC
Q 045580 309 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQ 388 (764)
Q Consensus 309 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 388 (764)
. ..++|+.|++++|.+++...+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|+
T Consensus 223 ~---~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 298 (390)
T 3o6n_A 223 P---VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK 298 (390)
T ss_dssp C---CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCC
T ss_pred c---ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCC
Confidence 2 234455555555544443334444445555555555544444455555555555555555542 333334444444
Q ss_pred EEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcC
Q 045580 389 FLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL 468 (764)
Q Consensus 389 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 468 (764)
+|++++|+++ .+|..+..+++|+.|++++|++++. + +..+++|+.|++++|++
T Consensus 299 ~L~L~~n~l~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 299 VLDLSHNHLL------------------------HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EEECCSSCCC------------------------CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred EEECCCCcce------------------------ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCc
Confidence 4444444444 2333344455555555555555432 2 44455555566655555
Q ss_pred Cc
Q 045580 469 KG 470 (764)
Q Consensus 469 ~~ 470 (764)
.+
T Consensus 352 ~~ 353 (390)
T 3o6n_A 352 DC 353 (390)
T ss_dssp EH
T ss_pred cc
Confidence 53
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-33 Score=290.96 Aligned_cols=251 Identities=28% Similarity=0.460 Sum_probs=229.9
Q ss_pred CCCceEEcccccCCC--cccccccCCCCCCEEeCcC-CccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccE
Q 045580 337 TNLCWLYLNNNHFSG--KIQDGLSKATSLLELDLSN-NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRR 412 (764)
Q Consensus 337 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~ 412 (764)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 468888899999988 7888999999999999995 89998999999999999999999999998888877 8999999
Q ss_pred EeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCC-CccEEEccCCcCCccCCccccCCCCCCEEeCCCCc
Q 045580 413 LYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFS-YLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491 (764)
Q Consensus 413 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 491 (764)
|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999887 9999999999
Q ss_pred CcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccccc
Q 045580 492 FNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNY 571 (764)
Q Consensus 492 l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 571 (764)
+++.+|..+.. +++
T Consensus 209 l~~~~~~~~~~------------------------------------------------------------------l~~ 222 (313)
T 1ogq_A 209 LEGDASVLFGS------------------------------------------------------------------DKN 222 (313)
T ss_dssp EEECCGGGCCT------------------------------------------------------------------TSC
T ss_pred ccCcCCHHHhc------------------------------------------------------------------CCC
Confidence 98877765543 347
Q ss_pred ccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccC
Q 045580 572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSY 651 (764)
Q Consensus 572 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 651 (764)
|+.|+|++|++++.+|. +..+++|+.|+|++|++++.+|..++.+++|+.|+|++|+++|.+|.. ..+++|+.+++++
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence 99999999999977766 889999999999999999999999999999999999999999999987 8899999999999
Q ss_pred Cc-ccc
Q 045580 652 NH-LSG 656 (764)
Q Consensus 652 N~-l~g 656 (764)
|+ ++|
T Consensus 301 N~~lc~ 306 (313)
T 1ogq_A 301 NKCLCG 306 (313)
T ss_dssp SSEEES
T ss_pred CCCccC
Confidence 98 565
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=4.1e-31 Score=301.61 Aligned_cols=308 Identities=20% Similarity=0.205 Sum_probs=261.2
Q ss_pred CCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580 289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366 (764)
Q Consensus 289 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 366 (764)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+.. .+..+++|++|++++|.+++..+..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456777777777776 677776677788888888888777655 67788899999999999998888889999999999
Q ss_pred eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCC
Q 045580 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445 (764)
Q Consensus 367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 445 (764)
++++|.+++..+..|..+++|++|++++|.+++..|..+ .+++|+.|++++|.+++.. +..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 999999997766778999999999999999999888877 8999999999999998653 456789999999999987
Q ss_pred CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccch
Q 045580 446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIS 525 (764)
Q Consensus 446 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 525 (764)
+ +...++|+.|++++|.+... +..+ .++|+.|++++|.+++. ..+..
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~----------------------- 252 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLN----------------------- 252 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred c-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence 4 23457899999999999844 3332 36899999999999862 22221
Q ss_pred hhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccc
Q 045580 526 TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNF 605 (764)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 605 (764)
+++|+.|+|++|.+++.+|..++.+++|+.|+|++|+
T Consensus 253 -------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 253 -------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp -------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred -------------------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 4589999999999999999999999999999999999
Q ss_pred cccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCC
Q 045580 606 LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG 680 (764)
Q Consensus 606 l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~ 680 (764)
+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++.. ...+..+....+.||+..|.
T Consensus 290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 995 6878888999999999999999 68888999999999999999998753 34467778888999998774
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.9e-34 Score=315.74 Aligned_cols=359 Identities=21% Similarity=0.193 Sum_probs=185.0
Q ss_pred CccEEEcCCCCCCCcc--HhhhCCCCccEEEccCCCCCCc----cchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCcc
Q 045580 171 QLKALNLRNCSLHALP--SFLLHQLDLRFIDLSHNKLQGT----FPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244 (764)
Q Consensus 171 ~L~~L~L~~n~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~ 244 (764)
+|++|++++|+++..+ ..+..+++|++|++++|++++. ++.. +..+++|++|++++|.+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l-------------- 68 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNEL-------------- 68 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCC--------------
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcC--------------
Confidence 3566666666664432 2245556666666666665532 1222 22444555555444444
Q ss_pred EEEccCCCCCCCCChhHhhcCC----CCcEEEcccCCCCc----cCCccccCCCCCCEEECCCCcccccCchhhhh----
Q 045580 245 RIDISHNKFSGQLPGNMGKILP----ELLSLNLSENGFEV----RIPSSMSEMKRLESLDLSSNNFSGELPRQFLS---- 312 (764)
Q Consensus 245 ~L~ls~n~l~~~~~~~~~~~l~----~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---- 312 (764)
.+..+..+...++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+..
T Consensus 69 ---------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 69 ---------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp ---------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred ---------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 3233444444454 58888888887763 34667777888888888888776433333221
Q ss_pred CCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccccc-----CCCCC
Q 045580 313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFG-----NLSGL 387 (764)
Q Consensus 313 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L 387 (764)
..++|++|++++|.+++... ..++..+..+++|++|++++|.+.+..+..+. ..++|
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L 201 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASC------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGH------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred CCCcceEEECCCCCCCHHHH------------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc
Confidence 23345555555554443210 01123334445555555555554432222221 23455
Q ss_pred CEEECcCCCCCCC----CCCcc-cCCCccEEeccCCcccccc-----chhhcCCCCCCEEEccCCcCCCc----chhhhh
Q 045580 388 QFLDISENQLSGS----VPSSF-NLSSLRRLYMHMNAFNGSI-----PGALRRSSSLTVLDLRDNQFSGS----IPIWIN 453 (764)
Q Consensus 388 ~~L~L~~n~l~~~----~~~~~-~~~~L~~L~l~~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~ 453 (764)
++|++++|.+++. ++..+ .+++|++|++++|.+.+.. +..+..+++|+.|++++|++++. ++..+.
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 5555555555432 12222 3455555555555544321 12222456666666666666643 455555
Q ss_pred cCCCccEEEccCCcCCccCCcccc-----CCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhH
Q 045580 454 EFSYLGILLLRGNQLKGNIPNQLC-----HLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEF 528 (764)
Q Consensus 454 ~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (764)
.+++|++|++++|.+++..+..+. ..++|+.|++++|.+++.....+...-
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l------------------------ 337 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL------------------------ 337 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH------------------------
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH------------------------
Confidence 566666666666666543332222 124666666666666543211111000
Q ss_pred HHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccC-----ccccceecccc
Q 045580 529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGS-----LSEIRALNLSH 603 (764)
Q Consensus 529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-----l~~L~~L~Ls~ 603 (764)
..++.|+.||+++|++++..+..+.. .++|+.|+|++
T Consensus 338 --------------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 338 --------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp --------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred --------------------------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 01235666666666666544443332 45666777777
Q ss_pred ccccc----ccCccccCCCCCCEEECcCCcCccc
Q 045580 604 NFLSG----SIPQSLSNLKMIESLDLSHNDLSGQ 633 (764)
Q Consensus 604 N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~ 633 (764)
|++++ .+|..+..+++|++||+++|++++.
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 76665 5666666667777777777766643
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-33 Score=313.14 Aligned_cols=357 Identities=18% Similarity=0.161 Sum_probs=283.9
Q ss_pred CCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCc----cCCccccCCCCCCEEECCCCcccccCchhhhhCCC
Q 045580 240 KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEV----RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF 315 (764)
Q Consensus 240 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~ 315 (764)
.++|++|++++|+++......++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35678888888888744444445568999999999999875 34667888899999999999988655556656666
Q ss_pred ----CCCEEEeecccccce------eecCCCCCCceEEcccccCCCccccccc-----CCCCCCEEeCcCCccCCCc---
Q 045580 316 ----SLSFLSLSDNHLQGE------VVFPNSTNLCWLYLNNNHFSGKIQDGLS-----KATSLLELDLSNNMLYGQI--- 377 (764)
Q Consensus 316 ----~L~~L~l~~n~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~--- 377 (764)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 799999999998852 1678899999999999998765444332 3568999999999998643
Q ss_pred -cccccCCCCCCEEECcCCCCCCCCCCcc------cCCCccEEeccCCccccc----cchhhcCCCCCCEEEccCCcCCC
Q 045580 378 -PHWFGNLSGLQFLDISENQLSGSVPSSF------NLSSLRRLYMHMNAFNGS----IPGALRRSSSLTVLDLRDNQFSG 446 (764)
Q Consensus 378 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~ 446 (764)
+..+..+++|++|++++|.+++..+..+ ..++|+.|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 5667778999999999999876544333 256999999999999874 57778889999999999999876
Q ss_pred cch-----hhhhcCCCccEEEccCCcCCcc----CCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccc
Q 045580 447 SIP-----IWINEFSYLGILLLRGNQLKGN----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVL 517 (764)
Q Consensus 447 ~~p-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~ 517 (764)
... ..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++..+..+...-
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l------------- 308 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL------------- 308 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-------------
Confidence 432 2234689999999999999864 577777899999999999998754433332210
Q ss_pred ccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccccc----CCccccCc
Q 045580 518 WETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD----IPSEIGSL 593 (764)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip~~l~~l 593 (764)
....+.|+.|++++|.+++. +|..+..+
T Consensus 309 ------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 309 ------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp ------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred ------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 01124799999999999875 56777888
Q ss_pred cccceecccccccccccCccccC-----CCCCCEEECcCCcCcc----cCcccccCCCCCCeEeccCCccccC
Q 045580 594 SEIRALNLSHNFLSGSIPQSLSN-----LKMIESLDLSHNDLSG----QIPPQLTELNFLSNFNVSYNHLSGP 657 (764)
Q Consensus 594 ~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~ 657 (764)
++|+.|++++|++++..+..+.. .++|+.|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99999999999999776666653 6799999999999996 7899999999999999999999763
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.8e-30 Score=270.89 Aligned_cols=285 Identities=21% Similarity=0.249 Sum_probs=190.9
Q ss_pred CCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeC
Q 045580 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 368 (764)
Q Consensus 291 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 368 (764)
+++.++++++.+. .+|..+ .++++.|++++|.+.+.. .+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3445555555444 444332 234455555555544432 3455566666666666666566666667777777777
Q ss_pred cCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCcccc--ccchhhcCCCCCCEEEccCCcCC
Q 045580 369 SNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNG--SIPGALRRSSSLTVLDLRDNQFS 445 (764)
Q Consensus 369 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~ 445 (764)
++|.++ .+|..+. ++|++|++++|.+++..+..+ .+++|+.|++++|.++. ..+..+..+ +|+.|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777666 3444333 567777777777765555545 66777777777776642 455666666 7778888888777
Q ss_pred CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccch
Q 045580 446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIS 525 (764)
Q Consensus 446 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 525 (764)
+ +|..+. ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------- 239 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF----------------------- 239 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----------------------
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-----------------------
Confidence 4 454433 67888888888888777777888888888888888887655544433
Q ss_pred hhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccc
Q 045580 526 TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNF 605 (764)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 605 (764)
+++|+.|++++|+++ .+|..++.+++|+.|++++|+
T Consensus 240 -------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 240 -------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred -------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 346788888888887 678888888888888888888
Q ss_pred cccccCccccCC------CCCCEEECcCCcCc--ccCcccccCCCCCCeEeccCCc
Q 045580 606 LSGSIPQSLSNL------KMIESLDLSHNDLS--GQIPPQLTELNFLSNFNVSYNH 653 (764)
Q Consensus 606 l~~~~p~~l~~l------~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~ 653 (764)
+++..+..+... .+|+.|++++|.+. +..|..+..++.|+.+++++|+
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 887666666543 56888888888887 6677888888888888888874
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.4e-30 Score=268.85 Aligned_cols=247 Identities=22% Similarity=0.245 Sum_probs=130.9
Q ss_pred CCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccE
Q 045580 334 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRR 412 (764)
Q Consensus 334 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~ 412 (764)
..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+ .+++|+.
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence 33444444444445554444555555555555555555554 3333322 455555555555554444333 4555555
Q ss_pred EeccCCcccc--ccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCC
Q 045580 413 LYMHMNAFNG--SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN 490 (764)
Q Consensus 413 L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 490 (764)
|++++|.+.. ..+..+..+++|+.|++++|+++. +|..+. ++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 5555555532 344455556666666666666552 333322 55666666666666555555666666666666666
Q ss_pred cCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccc
Q 045580 491 KFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN 570 (764)
Q Consensus 491 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 570 (764)
.+++..+..+.. ++
T Consensus 227 ~l~~~~~~~~~~------------------------------------------------------------------l~ 240 (330)
T 1xku_A 227 SISAVDNGSLAN------------------------------------------------------------------TP 240 (330)
T ss_dssp CCCEECTTTGGG------------------------------------------------------------------ST
T ss_pred cCceeChhhccC------------------------------------------------------------------CC
Confidence 655433333222 23
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccC------CCCCCEEECcCCcCcc--cCcccccCCC
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSN------LKMIESLDLSHNDLSG--QIPPQLTELN 642 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~LdLs~N~l~~--~ip~~l~~l~ 642 (764)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+.. ...|+.|++++|.+.. ..|..+..+.
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 5566666666665 55666666666666666666666544444432 2556666666666642 4455666666
Q ss_pred CCCeEeccCCc
Q 045580 643 FLSNFNVSYNH 653 (764)
Q Consensus 643 ~L~~L~ls~N~ 653 (764)
.++.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 66666666653
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-29 Score=266.28 Aligned_cols=249 Identities=24% Similarity=0.241 Sum_probs=170.7
Q ss_pred CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 321 (764)
Q Consensus 242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 321 (764)
+++.++++++.+. .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+.+..|.. +..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEE
Confidence 4555666666655 566544 356777777777777666667777777777777777776333433 35667777777
Q ss_pred eecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC--CccccccCCCCCCEEECcCCCCCC
Q 045580 322 LSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG--QIPHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 322 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
+++|.++...... .++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++
T Consensus 109 L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 7777666433111 1677777777777776666667778888888888887752 556666666 78888888887775
Q ss_pred CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479 (764)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 479 (764)
. |..+ .++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 187 l-~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 I-PKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp C-CSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred c-Cccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 3 3322 257777777777777766677777777888888888777766667777777888888877777 667677777
Q ss_pred CCCCEEeCCCCcCcCCcChhh
Q 045580 480 SLLNILDLSYNKFNGPIPVCF 500 (764)
Q Consensus 480 ~~L~~L~Ls~n~l~~~~p~~~ 500 (764)
++|+.|++++|++++..+..+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSS
T ss_pred ccCCEEECCCCCCCccChhHc
Confidence 777777777777765444433
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.3e-29 Score=263.44 Aligned_cols=250 Identities=20% Similarity=0.230 Sum_probs=176.7
Q ss_pred CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 321 (764)
Q Consensus 242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 321 (764)
+++.++++++.+. .+|..+ .+.+++|++++|.+++..+..|.++++|++|++++|.+.+..|.. +..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEE
Confidence 4455555555554 455433 245666666666666555555666666666666666666333433 35566666666
Q ss_pred eecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC--CccccccCCCCCCEEECcCCCCCC
Q 045580 322 LSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG--QIPHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 322 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
+++|.++.... .-.++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 107 Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 107 LSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCcCCccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66666554331 112577788888888877777778888888888888888753 566778888888888888888875
Q ss_pred CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479 (764)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 479 (764)
. |... .++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 186 l-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 I-PQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp C-CSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred C-Cccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 3 3332 277888888888888777788888888999999988888777778888888888999888888 677788888
Q ss_pred CCCCEEeCCCCcCcCCcChhh
Q 045580 480 SLLNILDLSYNKFNGPIPVCF 500 (764)
Q Consensus 480 ~~L~~L~Ls~n~l~~~~p~~~ 500 (764)
++|++|++++|++++..+..+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSS
T ss_pred CCcCEEECCCCcCCccChhhc
Confidence 888888888888876554444
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.1e-31 Score=301.82 Aligned_cols=439 Identities=13% Similarity=0.121 Sum_probs=244.3
Q ss_pred CCCCcccccccCCCC-Cccccc-CCccccCCCCcce----e--------eeccccccCCCCCcEEECcCCccc---ccCc
Q 045580 27 IKKPQELWHKFFPKG-SITDFS-VEDSCRKTSGVPL----T--------VFVNTGICELKKLVELDLSKNNLY---GHLS 89 (764)
Q Consensus 27 ~~~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~--------~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~ 89 (764)
..+|+++|..++.+- ...+.. ....|+.|.++.. . ..++..+..+++|++|+|+++... +.+|
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 468999998887654 333332 3345766755421 1 112233557888999999875421 2222
Q ss_pred h------------hhcCCCCCCEEECCCCCCCCcchhhhhCC--CCCCEEECcCCC-CCCCCChhhhccCCCCcEEEccC
Q 045580 90 P------------CLSNLTHIKVLDLSSNQLTGNLQSVIANI--KSLEYLSLDDNN-FEGSFSFNSLKNHSKLQVFKLSN 154 (764)
Q Consensus 90 ~------------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~ 154 (764)
. ....+++|++|+|++|.+++..+..+... .+|++|++++|. +..........++++|++|++++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 2 22378899999999998887777767663 349999998886 21000012234788899999988
Q ss_pred CCCCCcccc-C--CCCCCCCccEEEcCCCCCC-----CccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEcc
Q 045580 155 SLVKIETEE-F--PGLPEYQLKALNLRNCSLH-----ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL 226 (764)
Q Consensus 155 ~~~~~~~~~-~--~~~~~~~L~~L~L~~n~l~-----~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 226 (764)
|.+...... + .....++|++|++++|.++ .++..+..+++|++|++++|.+. .+|.. +..+++|++|+++
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGG 251 (592)
T ss_dssp CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEEC
T ss_pred ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhccc
Confidence 865322100 0 0012356888888888875 24455667888888888888876 35544 4578888888887
Q ss_pred CCcCc----cCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCC-ccccCCCCCCEEECCCCc
Q 045580 227 NNSLS----GNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIP-SSMSEMKRLESLDLSSNN 301 (764)
Q Consensus 227 ~n~l~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~ 301 (764)
..... ........+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+++ +.
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~ 328 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NV 328 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GG
T ss_pred ccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc
Confidence 53221 11112235567777777765333 4554443 36677777777776554332 234667777777776 33
Q ss_pred ccccCchhhhhCCCCCCEEEeec-----------cccccee---ecCCCCCCceEEcccccCCCcccccccC-CCCCCEE
Q 045580 302 FSGELPRQFLSGCFSLSFLSLSD-----------NHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSK-ATSLLEL 366 (764)
Q Consensus 302 l~~~~p~~~~~~l~~L~~L~l~~-----------n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L 366 (764)
+.+.....+...+++|++|++++ +.+++.. ....+++|++|+++.|.+++..+..+.. +++|+.|
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEE
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEE
Confidence 33233333345566777777772 3444321 1233566666666666665544444443 5566666
Q ss_pred eCc----CCccCCC-----ccccccCCCCCCEEECcCCC--CCCCCCCcc--cCCCccEEeccCCccccc-cchhhcCCC
Q 045580 367 DLS----NNMLYGQ-----IPHWFGNLSGLQFLDISENQ--LSGSVPSSF--NLSSLRRLYMHMNAFNGS-IPGALRRSS 432 (764)
Q Consensus 367 ~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~~ 432 (764)
+++ .|.+++. ++..+.++++|++|++++|. +++..+..+ .+++|+.|++++|.+++. ++..+..++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 664 3444432 22234445566666665332 332222222 245555555555555432 233334455
Q ss_pred CCCEEEccCCcCCCc-chhhhhcCCCccEEEccCCcCCc
Q 045580 433 SLTVLDLRDNQFSGS-IPIWINEFSYLGILLLRGNQLKG 470 (764)
Q Consensus 433 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~ 470 (764)
+|+.|++++|.+++. ++.....+++|++|++++|++++
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 555555555554433 22233445555555555555543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=263.12 Aligned_cols=278 Identities=22% Similarity=0.228 Sum_probs=164.8
Q ss_pred CCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580 289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366 (764)
Q Consensus 289 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 366 (764)
|+.....+.+++.++ .+|..+ .++|++|++++|.+++.. .+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 334444566666665 555533 235555555555555433 34556666666666666666666667777777777
Q ss_pred eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC-Ccc-cCCCccEEeccCC-ccccccchhhcCCCCCCEEEccCCc
Q 045580 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP-SSF-NLSSLRRLYMHMN-AFNGSIPGALRRSSSLTVLDLRDNQ 443 (764)
Q Consensus 367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~ 443 (764)
++++|.+++..+..+..+++|++|++++|++++..+ ..+ .+++|+.|++++| .+.+..+..+..+++|++|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 777777765444456677777777777777664333 233 5566666666665 2443344455555555555555555
Q ss_pred CCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccccc
Q 045580 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQR 523 (764)
Q Consensus 444 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 523 (764)
+++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~------------------------------ 235 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD------------------------------ 235 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT------------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc------------------------------
Confidence 55555555555555555555555554222222233455555555555544
Q ss_pred chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc---Cccccceec
Q 045580 524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG---SLSEIRALN 600 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~ 600 (764)
+..+..+. ....++.++
T Consensus 236 ------------------------------------------------------------~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 236 ------------------------------------------------------------TFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp ------------------------------------------------------------TCCCC------CCCCCCEEE
T ss_pred ------------------------------------------------------------cccccccccccccchhhccc
Confidence 33222221 223344444
Q ss_pred cccccccc----ccCccccCCCCCCEEECcCCcCcccCccc-ccCCCCCCeEeccCCccccCCCCC
Q 045580 601 LSHNFLSG----SIPQSLSNLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 601 Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
|+++.+++ .+|..++.+++|+.||+++|+++ .+|.. +..+++|++|++++|++.|.+|..
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 44444443 47788888999999999999998 45555 588999999999999999988843
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.1e-28 Score=252.29 Aligned_cols=252 Identities=23% Similarity=0.247 Sum_probs=206.8
Q ss_pred ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEecc
Q 045580 340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMH 416 (764)
Q Consensus 340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~ 416 (764)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..|..+++|++|++++|.++... +..+ .+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666666 344433 257888888888887555556788888888888888887432 3333 67888899998
Q ss_pred CCccccccchhhcCCCCCCEEEccCCcCCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC-
Q 045580 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG- 494 (764)
Q Consensus 417 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~- 494 (764)
+|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 88887 456678889999999999999986554 578889999999999999998888889999999999999999875
Q ss_pred CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccE
Q 045580 495 PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG 574 (764)
Q Consensus 495 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 574 (764)
.+|..+.. +++|+.
T Consensus 166 ~~~~~~~~------------------------------------------------------------------l~~L~~ 179 (306)
T 2z66_A 166 FLPDIFTE------------------------------------------------------------------LRNLTF 179 (306)
T ss_dssp EECSCCTT------------------------------------------------------------------CTTCCE
T ss_pred cchhHHhh------------------------------------------------------------------CcCCCE
Confidence 34544332 447999
Q ss_pred EEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC-CCCeEeccCCc
Q 045580 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN-FLSNFNVSYNH 653 (764)
Q Consensus 575 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~ 653 (764)
|++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999988899999999999999999999988888899999999999999999999999999984 99999999999
Q ss_pred cccCCCCC
Q 045580 654 LSGPTPNA 661 (764)
Q Consensus 654 l~g~~p~~ 661 (764)
++|.++..
T Consensus 260 ~~~~c~~~ 267 (306)
T 2z66_A 260 FACTCEHQ 267 (306)
T ss_dssp EECSGGGH
T ss_pred eecccChH
Confidence 99987643
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.3e-27 Score=258.49 Aligned_cols=251 Identities=22% Similarity=0.204 Sum_probs=197.4
Q ss_pred ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580 340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN 418 (764)
Q Consensus 340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n 418 (764)
..++.++..++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+ .+++|+.|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 44555555555 3444332 567777777777776667777777778888888877777666666 6777888888888
Q ss_pred ccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCc-CCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ-LKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497 (764)
Q Consensus 419 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 497 (764)
.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|. +....+..+..+++|+.|++++|++++. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 8776666677888888888888888886666678888888888888844 4433345688889999999999988742 2
Q ss_pred hhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEc
Q 045580 498 VCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDF 577 (764)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 577 (764)
. +. .+++|+.|+|
T Consensus 213 ~-~~------------------------------------------------------------------~l~~L~~L~L 225 (452)
T 3zyi_A 213 N-LT------------------------------------------------------------------PLVGLEELEM 225 (452)
T ss_dssp C-CT------------------------------------------------------------------TCTTCCEEEC
T ss_pred c-cc------------------------------------------------------------------ccccccEEEC
Confidence 1 11 1457899999
Q ss_pred ccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580 578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP 657 (764)
Q Consensus 578 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 657 (764)
++|++++..|..|.++++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99999988899999999999999999999988899999999999999999999988888889999999999999999998
Q ss_pred CCCC
Q 045580 658 TPNA 661 (764)
Q Consensus 658 ~p~~ 661 (764)
|...
T Consensus 306 C~~~ 309 (452)
T 3zyi_A 306 CDIL 309 (452)
T ss_dssp TTTH
T ss_pred CCch
Confidence 7643
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2e-27 Score=249.51 Aligned_cols=224 Identities=19% Similarity=0.255 Sum_probs=152.8
Q ss_pred CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL 439 (764)
Q Consensus 361 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 439 (764)
++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ .+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 33444444444444444444444 333333 4444444444444444 34445555555555555
Q ss_pred cCCcCCCcchhhhh---------cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccc
Q 045580 440 RDNQFSGSIPIWIN---------EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQ 510 (764)
Q Consensus 440 ~~n~l~~~~p~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~ 510 (764)
++|++.+.+|..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~-------- 227 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH-------- 227 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG--------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc--------
Confidence 55555555554443 4788888888888887 677778888888888888888874 4433332
Q ss_pred cCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccc
Q 045580 511 AAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI 590 (764)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l 590 (764)
+++|+.|++++|++.+.+|..+
T Consensus 228 ----------------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 228 ----------------------------------------------------------LPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp ----------------------------------------------------------CTTCCEEECTTCTTCCBCCCCT
T ss_pred ----------------------------------------------------------CCCCCEEECcCCcchhhhHHHh
Confidence 3478888888888888888888
Q ss_pred cCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccc
Q 045580 591 GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655 (764)
Q Consensus 591 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 655 (764)
+.+++|+.|+|++|++.+.+|..++++++|+.|+|++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 89999999999999888889988999999999999999999999999999999999988877554
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.5e-29 Score=289.77 Aligned_cols=243 Identities=14% Similarity=0.074 Sum_probs=133.4
Q ss_pred ChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCC--CCccHhhhCCCCccEEEccCCCCCCccchHHh
Q 045580 137 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL--HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLL 214 (764)
Q Consensus 137 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~ 214 (764)
+...+..+++|++|+++++....... ..+. ..... ..++.....+++|++|+|++|.+++..+.++.
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~--------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 133 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFN---LIPE--------NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGT---CSCT--------TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcc---cccc--------cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHH
Confidence 44566788889999998754311110 0000 00001 11233344788899999998888766666655
Q ss_pred hcCCC-CCEEEccCCcCcc---CCCCCCCCCCccEEEccCCCCCCCCCh---hHhhcCCCCcEEEcccCCCC----ccCC
Q 045580 215 QNNTK-LDTLYLLNNSLSG---NFQLPSSKHDLLRIDISHNKFSGQLPG---NMGKILPELLSLNLSENGFE----VRIP 283 (764)
Q Consensus 215 ~~l~~-L~~L~L~~n~l~~---~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~~l~~L~~L~L~~n~~~----~~~~ 283 (764)
..+++ |++|++++|.-.. .......+++|++|++++|.+++.... .+...+++|++|++++|.++ ..++
T Consensus 134 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 213 (592)
T 3ogk_B 134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213 (592)
T ss_dssp HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence 43445 8888888876211 111112567788888888876644322 13334788888888888776 2344
Q ss_pred ccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc-----eeecCCCCCCceEEcccccCCCccccccc
Q 045580 284 SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-----EVVFPNSTNLCWLYLNNNHFSGKIQDGLS 358 (764)
Q Consensus 284 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 358 (764)
..+.++++|++|++++|.+. .+|.. +..+++|+.|+++...... ...+..+++|+.|+++++.. ..++..+.
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~ 290 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP 290 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG
T ss_pred HHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh
Confidence 45567788888888888777 45543 4677788887776532110 01333444455555544321 23333444
Q ss_pred CCCCCCEEeCcCCccCCCcc-ccccCCCCCCEEECc
Q 045580 359 KATSLLELDLSNNMLYGQIP-HWFGNLSGLQFLDIS 393 (764)
Q Consensus 359 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 393 (764)
.+++|++|++++|.+++... ..+..+++|++|+++
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 44445555555444332211 223444444444444
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.1e-27 Score=256.53 Aligned_cols=251 Identities=23% Similarity=0.231 Sum_probs=192.3
Q ss_pred ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580 340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN 418 (764)
Q Consensus 340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n 418 (764)
..++.++..++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..+ .+++|+.|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34555555555 3444332 566777777777776666667777777777777777776665666 6777777777777
Q ss_pred ccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCc-CCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ-LKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497 (764)
Q Consensus 419 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 497 (764)
++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|+ +....+..|..+++|++|++++|+++. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 7776666667778888888888888876666677888888888888754 443334467888889999999888762 33
Q ss_pred hhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEc
Q 045580 498 VCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDF 577 (764)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 577 (764)
. +. .+++|+.|+|
T Consensus 202 ~-~~------------------------------------------------------------------~l~~L~~L~L 214 (440)
T 3zyj_A 202 N-LT------------------------------------------------------------------PLIKLDELDL 214 (440)
T ss_dssp C-CT------------------------------------------------------------------TCSSCCEEEC
T ss_pred c-cC------------------------------------------------------------------CCcccCEEEC
Confidence 1 11 1457899999
Q ss_pred ccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580 578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP 657 (764)
Q Consensus 578 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 657 (764)
++|++++..|..|.++++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 99999988899999999999999999999988899999999999999999999988888889999999999999999998
Q ss_pred CCCC
Q 045580 658 TPNA 661 (764)
Q Consensus 658 ~p~~ 661 (764)
|...
T Consensus 295 C~l~ 298 (440)
T 3zyj_A 295 CDIL 298 (440)
T ss_dssp STTH
T ss_pred CCch
Confidence 8643
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-27 Score=245.68 Aligned_cols=229 Identities=21% Similarity=0.202 Sum_probs=163.9
Q ss_pred CEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCC
Q 045580 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442 (764)
Q Consensus 364 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 442 (764)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555554 233322 3456666666666665554444 5666666666666666555666777777777777777
Q ss_pred c-CCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccc
Q 045580 443 Q-FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETT 521 (764)
Q Consensus 443 ~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 521 (764)
+ ++...|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 6 66555667777777777777777777666777777778888888888776544433332
Q ss_pred ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc
Q 045580 522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL 601 (764)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L 601 (764)
+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 152 -----------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 152 -----------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 346778888888888666667888888888888
Q ss_pred cccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 602 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
++|++++..|..++++++|+.|++++|++++..+..+..+++|++|++++|++.|.++..
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 888888888888888888999999999888877777888888999999999988877754
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.8e-27 Score=246.64 Aligned_cols=233 Identities=18% Similarity=0.170 Sum_probs=163.2
Q ss_pred CCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECc
Q 045580 315 FSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDIS 393 (764)
Q Consensus 315 ~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 393 (764)
+.++.|++++|.++... .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 45555555555554333 3334445555555555544 44444444455555555555444 344444444455555554
Q ss_pred CCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCC
Q 045580 394 ENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP 473 (764)
Q Consensus 394 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 473 (764)
+|++.+.+|..+.- . ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|++++ +|
T Consensus 159 ~n~~~~~~p~~~~~-----~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~ 222 (328)
T 4fcg_A 159 ACPELTELPEPLAS-----T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG 222 (328)
T ss_dssp EETTCCCCCSCSEE-----E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CC
T ss_pred CCCCccccChhHhh-----c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cc
Confidence 44444444432210 0 01122445889999999999998 788889999999999999999984 66
Q ss_pred ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccce
Q 045580 474 NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGI 553 (764)
Q Consensus 474 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 553 (764)
..+..+++|++|++++|++.+.+|..+..
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--------------------------------------------------- 251 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGG--------------------------------------------------- 251 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTC---------------------------------------------------
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcC---------------------------------------------------
Confidence 67888999999999999998888876654
Q ss_pred EEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580 554 EFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631 (764)
Q Consensus 554 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 631 (764)
+++|+.|+|++|++.+.+|..++++++|+.|+|++|++.+.+|+.++++++|+.+++..|.+.
T Consensus 252 ---------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 252 ---------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ---------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ---------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 347899999999999999999999999999999999999999999999999999999987765
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.3e-26 Score=241.57 Aligned_cols=247 Identities=23% Similarity=0.256 Sum_probs=175.6
Q ss_pred cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccc--cCchhhhhCCCCCCEEE
Q 045580 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG--ELPRQFLSGCFSLSFLS 321 (764)
Q Consensus 244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~ 321 (764)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.+.. ..+..+ ..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence 45666666666 666644 3578888888888875444457788888888888887762 124443 4677888888
Q ss_pred eeccccccee-ecCCCCCCceEEcccccCCCccc-ccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCC
Q 045580 322 LSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 322 l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
+++|.+.... .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 8888777544 46667777777777777775544 467777777788887777776677777777777777777777765
Q ss_pred -CCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc
Q 045580 400 -SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC 477 (764)
Q Consensus 400 -~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 477 (764)
..|..+ .+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 455555 677777777777777766677777777777777777777766666677777777777777777777777777
Q ss_pred CCC-CCCEEeCCCCcCcCC
Q 045580 478 HLS-LLNILDLSYNKFNGP 495 (764)
Q Consensus 478 ~l~-~L~~L~Ls~n~l~~~ 495 (764)
.++ +|+.|++++|++++.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 663 777777777777654
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4e-27 Score=242.80 Aligned_cols=252 Identities=19% Similarity=0.196 Sum_probs=193.3
Q ss_pred ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580 340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN 418 (764)
Q Consensus 340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n 418 (764)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 455666666653 33322 3577777787777776666677777788888888887777666666 6778888888888
Q ss_pred c-cccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580 419 A-FNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497 (764)
Q Consensus 419 ~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 497 (764)
. +....+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665667778888888888888888887778888888889999999998887666778888999999999998875444
Q ss_pred hhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEc
Q 045580 498 VCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDF 577 (764)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 577 (764)
..+.. +++|+.|++
T Consensus 171 ~~~~~------------------------------------------------------------------l~~L~~L~l 184 (285)
T 1ozn_A 171 RAFRG------------------------------------------------------------------LHSLDRLLL 184 (285)
T ss_dssp TTTTT------------------------------------------------------------------CTTCCEEEC
T ss_pred HHhcC------------------------------------------------------------------ccccCEEEC
Confidence 33332 347889999
Q ss_pred ccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580 578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP 657 (764)
Q Consensus 578 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 657 (764)
++|++++..|..++.+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+.. .....++.+..+.|.+.|.
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEE
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccC
Confidence 999999888999999999999999999999877778999999999999999998654421 1223455666788888888
Q ss_pred CCCC
Q 045580 658 TPNA 661 (764)
Q Consensus 658 ~p~~ 661 (764)
.|..
T Consensus 264 ~p~~ 267 (285)
T 1ozn_A 264 LPQR 267 (285)
T ss_dssp ESGG
T ss_pred CchH
Confidence 8864
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=246.61 Aligned_cols=253 Identities=23% Similarity=0.257 Sum_probs=192.5
Q ss_pred CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 321 (764)
Q Consensus 242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 321 (764)
+|++|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 4555555555555 344432334778888888888887766777888888888888888887 66666567788888888
Q ss_pred eeccccccee---ecCCCCCCceEEcccc-cCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCC
Q 045580 322 LSDNHLQGEV---VFPNSTNLCWLYLNNN-HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQL 397 (764)
Q Consensus 322 l~~n~l~~~~---~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 397 (764)
+++|++++.. .+..+++|++|++++| .+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 8888777654 3677888888888888 46666667788888888888888888877788888888888888888887
Q ss_pred CCCCCCcc-cCCCccEEeccCCccccccchhh---cCCCCCCEEEccCCcCCC----cchhhhhcCCCccEEEccCCcCC
Q 045580 398 SGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL---RRSSSLTVLDLRDNQFSG----SIPIWINEFSYLGILLLRGNQLK 469 (764)
Q Consensus 398 ~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 469 (764)
.......+ .+++|+.|++++|.+++..+..+ .....++.++++++.+++ .+|.++..+++|++|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 64333333 57888888888888876554333 346778999999999886 46888999999999999999999
Q ss_pred ccCCcc-ccCCCCCCEEeCCCCcCcCCcC
Q 045580 470 GNIPNQ-LCHLSLLNILDLSYNKFNGPIP 497 (764)
Q Consensus 470 ~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p 497 (764)
.+|.. +..+++|++|++++|++++..|
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 56655 5899999999999999998766
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.8e-28 Score=252.83 Aligned_cols=249 Identities=22% Similarity=0.267 Sum_probs=181.9
Q ss_pred CCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccC-CCcccccc-------CCCCCCEEECcCCCCCCCCCCcc-
Q 045580 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY-GQIPHWFG-------NLSGLQFLDISENQLSGSVPSSF- 405 (764)
Q Consensus 335 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~- 405 (764)
..++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 345667777777777 445544433 777777777773 34454444 57777777777777777666643
Q ss_pred --cCCCccEEeccCCccccccchhhcCC-----CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCcc--CCccc
Q 045580 406 --NLSSLRRLYMHMNAFNGSIPGALRRS-----SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN--IPNQL 476 (764)
Q Consensus 406 --~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~ 476 (764)
.+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 577777777777777766 6666555 7888888888888877778888888888888888887764 23344
Q ss_pred --cCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceE
Q 045580 477 --CHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIE 554 (764)
Q Consensus 477 --~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 554 (764)
..+++|++|++++|++++. +.....+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~-------------------------------------------------- 224 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETP-SGVCSALA-------------------------------------------------- 224 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCH-HHHHHHHH--------------------------------------------------
T ss_pred HhccCCCCCEEECCCCcCcch-HHHHHHHH--------------------------------------------------
Confidence 7788999999999988631 11000000
Q ss_pred EeeccccccccccccccccEEEcccCcccccCC-ccccCccccceecccccccccccCccccCCCCCCEEECcCCcCccc
Q 045580 555 FMTKKRYESYKGDILNYMTGLDFSCNELTGDIP-SEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ 633 (764)
Q Consensus 555 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 633 (764)
..+++|+.||+++|++++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|||++|++++.
T Consensus 225 ------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 225 ------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp ------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred ------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 113578899999999988775 55677889999999999998 7888776 8899999999999976
Q ss_pred CcccccCCCCCCeEeccCCcccc
Q 045580 634 IPPQLTELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 634 ip~~l~~l~~L~~L~ls~N~l~g 656 (764)
|. +..+++|++|++++|++++
T Consensus 290 -p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 290 -PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CC-TTTSCEEEEEECTTCTTTC
T ss_pred -hh-HhhCCCCCEEeccCCCCCC
Confidence 66 8889999999999999886
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-28 Score=252.86 Aligned_cols=247 Identities=22% Similarity=0.204 Sum_probs=190.8
Q ss_pred CCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEe
Q 045580 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLY 414 (764)
Q Consensus 335 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 414 (764)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 34566777777777776666677777778888888777765443 777778888888887776433 236788888
Q ss_pred ccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc-CCCCCCEEeCCCCcCc
Q 045580 415 MHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC-HLSLLNILDLSYNKFN 493 (764)
Q Consensus 415 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~ 493 (764)
+++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 888887765543 356788999999988877777888888999999999998877666663 6889999999999886
Q ss_pred CCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccccccc
Q 045580 494 GPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMT 573 (764)
Q Consensus 494 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 573 (764)
+. |.. ..+++|+
T Consensus 183 ~~-~~~-------------------------------------------------------------------~~l~~L~ 194 (317)
T 3o53_A 183 DV-KGQ-------------------------------------------------------------------VVFAKLK 194 (317)
T ss_dssp EE-ECC-------------------------------------------------------------------CCCTTCC
T ss_pred cc-ccc-------------------------------------------------------------------cccccCC
Confidence 42 100 0145789
Q ss_pred EEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc-ccCcccccCCCCCCeEeccCC
Q 045580 574 GLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS-GQIPPQLTELNFLSNFNVSYN 652 (764)
Q Consensus 574 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls~N 652 (764)
.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++++|
T Consensus 195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 99999999985 5556889999999999999998 57888999999999999999998 788889999999999999954
Q ss_pred -ccccCCCC
Q 045580 653 -HLSGPTPN 660 (764)
Q Consensus 653 -~l~g~~p~ 660 (764)
.+.|..|.
T Consensus 273 ~~l~~~~~~ 281 (317)
T 3o53_A 273 KKLTGQNEE 281 (317)
T ss_dssp HHHHSSSSC
T ss_pred hhccCCchh
Confidence 67775554
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.8e-29 Score=289.13 Aligned_cols=490 Identities=15% Similarity=0.102 Sum_probs=244.0
Q ss_pred CCCCCcccccccCCCCC-ccccc-CCccccCCCCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEEC
Q 045580 26 IIKKPQELWHKFFPKGS-ITDFS-VEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDL 103 (764)
Q Consensus 26 ~~~~p~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 103 (764)
+..+|+++|..++.+=. ..++. ....|+.|.++.. ...+.++++.+... .....+..+++|++|+|
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~-----------~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L 73 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER-----------WCRRKVFIGNCYAV-SPATVIRRFPKVRSVEL 73 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHH-----------HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEE
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh-----------hhceEEeecccccc-CHHHHHhhCCCceEEec
Confidence 35789999998875544 44432 3445777876621 11234555543322 22344566777777777
Q ss_pred CCCCCCCc---------------chhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCC
Q 045580 104 SSNQLTGN---------------LQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLP 168 (764)
Q Consensus 104 s~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 168 (764)
+++..... ++.....+++|++|++++|.+++..+......+++|++|++++|.
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~------------ 141 (594)
T 2p1m_B 74 KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE------------ 141 (594)
T ss_dssp ECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE------------
T ss_pred cCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC------------
Confidence 77642110 111223455555555555554422221111123333333332221
Q ss_pred CCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEE
Q 045580 169 EYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI 246 (764)
Q Consensus 169 ~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 246 (764)
.++. ++.....+++|++|++++|.+++..+.++. .....+++|++|
T Consensus 142 ------------~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~--------------------~~~~~~~~L~~L 189 (594)
T 2p1m_B 142 ------------GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS--------------------HFPDTYTSLVSL 189 (594)
T ss_dssp ------------EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG--------------------GSCTTCCCCCEE
T ss_pred ------------CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH--------------------HHhhcCCcCcEE
Confidence 1111 233333455555555555544432222211 122344555555
Q ss_pred EccCCC--CCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCc-------ccccCchhhhhCCCCC
Q 045580 247 DISHNK--FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN-------FSGELPRQFLSGCFSL 317 (764)
Q Consensus 247 ~ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-------l~~~~p~~~~~~l~~L 317 (764)
++++|. +.......+...+++|++|++++|.....++..+..+++|++|+++.+. +. .++.. +.++++|
T Consensus 190 ~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~-l~~~~~L 267 (594)
T 2p1m_B 190 NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA-LSGCKEL 267 (594)
T ss_dssp ECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH-HHTCTTC
T ss_pred EecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHH-HhcCCCc
Confidence 555554 1111111222235777777777763222355566667777777754442 22 23332 3566666
Q ss_pred CEE-Eeeccccccee-ecCCCCCCceEEcccccCCCccc-ccccCCCCCCEEeCcCCccCCC-ccccccCCCCCCEEECc
Q 045580 318 SFL-SLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFLDIS 393 (764)
Q Consensus 318 ~~L-~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 393 (764)
+.+ .+.+....... .+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++|++|++.
T Consensus 268 ~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp CEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 666 22221111111 11133445555555554432211 11334455555555544 2211 11112234445555443
Q ss_pred CCCCCCCCCCcccCCCccEEeccCCccccccchhh-cCCCCCCEEEccCCcCCCcchhhhh-cCCCccEEEcc--C----
Q 045580 394 ENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGAL-RRSSSLTVLDLRDNQFSGSIPIWIN-EFSYLGILLLR--G---- 465 (764)
Q Consensus 394 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~--~---- 465 (764)
++.-.| ....+.+++.....+ ..+++|+.|++..|.+++..+..+. .+++|+.|+++ +
T Consensus 347 ~~~~~g--------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 347 PSEPFV--------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp CSCTTC--------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred cCcccc--------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 321000 001223333222222 2467788887777777765555554 57888888887 3
Q ss_pred CcCCcc-----CCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccc
Q 045580 466 NQLKGN-----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSE 540 (764)
Q Consensus 466 n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (764)
+.+++. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-------------------------------------- 453 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-------------------------------------- 453 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--------------------------------------
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--------------------------------------
Confidence 455521 122255678888888866 554322221111
Q ss_pred cccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccc-cCccccceecccccccccccCc-cccCCC
Q 045580 541 VKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQ-SLSNLK 618 (764)
Q Consensus 541 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~ 618 (764)
.+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..++
T Consensus 454 ---------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 454 ---------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp ---------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred ---------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 13478888998888876655555 6688899999999988755444 445688
Q ss_pred CCCEEECcCCcCcccCcccc-cCCCCCCeEeccCCcc
Q 045580 619 MIESLDLSHNDLSGQIPPQL-TELNFLSNFNVSYNHL 654 (764)
Q Consensus 619 ~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N~l 654 (764)
+|+.|++++|+++......+ ..++.++...+..+.-
T Consensus 507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 99999999998865444444 4567776666665543
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.9e-25 Score=252.14 Aligned_cols=268 Identities=29% Similarity=0.357 Sum_probs=141.6
Q ss_pred CCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEccc
Q 045580 267 ELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN 346 (764)
Q Consensus 267 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~ 346 (764)
+++.|++++|.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|++++... .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence 3455555555554 3444333 45555555555554 3443 23445555555444443222 334555555555
Q ss_pred ccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccch
Q 045580 347 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPG 426 (764)
Q Consensus 347 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 426 (764)
|.+++. |. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++. |. .+.+|+.|++++|.+++ +|
T Consensus 111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~--~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA--LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CC-
T ss_pred CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC--ccCCCCEEECCCCCCCC-Cc-
Confidence 555532 22 34566666666666653 3332 35666666666666542 22 23456666666666653 33
Q ss_pred hhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhh
Q 045580 427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLW 506 (764)
Q Consensus 427 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~ 506 (764)
..+++|+.|++++|++++ +|. ..++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|.
T Consensus 178 --~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~-------- 238 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV-------- 238 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC--------
T ss_pred --ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC--------
Confidence 334566666666666653 332 2355666666666666 33322 3556666666666653 220
Q ss_pred cccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccC
Q 045580 507 TLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDI 586 (764)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i 586 (764)
.+++|+.|+|++|+++ .+
T Consensus 239 -------------------------------------------------------------~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 239 -------------------------------------------------------------LPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp -------------------------------------------------------------CCTTCCEEECCSSCCS-CC
T ss_pred -------------------------------------------------------------CCCcCcEEECCCCCCC-cC
Confidence 0224566666666666 34
Q ss_pred CccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC
Q 045580 587 PSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN 642 (764)
Q Consensus 587 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 642 (764)
|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus 257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 44 4455666666666666 5566666666666666666666666665555443
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3e-25 Score=243.57 Aligned_cols=246 Identities=23% Similarity=0.247 Sum_probs=212.5
Q ss_pred ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580 243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 322 (764)
Q Consensus 243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l 322 (764)
.+.++.++..++ .+|..+ .++++.|+|++|.++...+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 456777777777 778765 468889999999998877888999999999999999988 556555678899999999
Q ss_pred eccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCC-ccccccCCCCCCEEECcCCCCCC
Q 045580 323 SDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 323 ~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
++|.++... .+..+++|++|++++|.++...+..|..+++|++|++++|...+. .+..|.++++|++|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 999888765 578889999999999999987778899999999999999544434 4457899999999999999998
Q ss_pred CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479 (764)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 479 (764)
.+|....+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..+
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 45555588999999999999998889999999999999999999998888999999999999999999998777888999
Q ss_pred CCCCEEeCCCCcCcC
Q 045580 480 SLLNILDLSYNKFNG 494 (764)
Q Consensus 480 ~~L~~L~Ls~n~l~~ 494 (764)
++|+.|++++|++..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 999999999999864
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3e-25 Score=244.51 Aligned_cols=247 Identities=25% Similarity=0.267 Sum_probs=205.1
Q ss_pred ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580 243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 322 (764)
Q Consensus 243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l 322 (764)
...++.++..++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 345666666666 677654 367888888888888777788888888888888888887 444444577888888888
Q ss_pred eccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc-cccccCCCCCCEEECcCCCCCC
Q 045580 323 SDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI-PHWFGNLSGLQFLDISENQLSG 399 (764)
Q Consensus 323 ~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 399 (764)
++|.++... .+..+++|++|++++|.++...+..|..+++|++|++++|...+.+ +..|..+++|++|++++|.+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 888887655 4777888999999999988777778899999999999985443344 4568899999999999999985
Q ss_pred CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479 (764)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 479 (764)
. |....+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+
T Consensus 211 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 554488999999999999999889999999999999999999998889999999999999999999997777888999
Q ss_pred CCCCEEeCCCCcCcCC
Q 045580 480 SLLNILDLSYNKFNGP 495 (764)
Q Consensus 480 ~~L~~L~Ls~n~l~~~ 495 (764)
++|+.|++++|++...
T Consensus 290 ~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEccCCCcCCC
Confidence 9999999999998643
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=7e-25 Score=247.47 Aligned_cols=264 Identities=28% Similarity=0.302 Sum_probs=220.4
Q ss_pred CCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCc
Q 045580 290 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 369 (764)
Q Consensus 290 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 369 (764)
.+++.|++++|.+. .+|..+. ++|+.|++++|.++.... .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 36899999999998 8887653 799999999999986554 57899999999999985 444 67999999999
Q ss_pred CCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcch
Q 045580 370 NNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449 (764)
Q Consensus 370 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 449 (764)
+|.+++ +|. .+++|+.|++++|++++ +|.. +++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~--l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC--CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc
Confidence 999985 444 57899999999999986 3432 4899999999999985 343 35789999999999985 55
Q ss_pred hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHH
Q 045580 450 IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFE 529 (764)
Q Consensus 450 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (764)
..+++|+.|++++|++++ +|.. +++|+.|++++|.++. +|..
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~------------------------------ 219 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL------------------------------ 219 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC------------------------------
T ss_pred ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC------------------------------
Confidence 567899999999999985 5543 4789999999998873 2211
Q ss_pred HhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccc
Q 045580 530 AYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGS 609 (764)
Q Consensus 530 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 609 (764)
+++|+.|++++|++++ +| ..+++|+.|+|++|+|+ .
T Consensus 220 ---------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~ 255 (622)
T 3g06_A 220 ---------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-S 255 (622)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-C
T ss_pred ---------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-c
Confidence 2478999999999995 66 56689999999999999 5
Q ss_pred cCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 610 IPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 610 ~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 676 6789999999999999 78999999999999999999999987753
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1e-26 Score=257.42 Aligned_cols=236 Identities=22% Similarity=0.198 Sum_probs=169.2
Q ss_pred CCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEec
Q 045580 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYM 415 (764)
Q Consensus 336 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 415 (764)
+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 4567777777777777777777778888888888887775544 7777888888888887764332 367777777
Q ss_pred cCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc-CCCCCCEEeCCCCcCcC
Q 045580 416 HMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC-HLSLLNILDLSYNKFNG 494 (764)
Q Consensus 416 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 494 (764)
++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77777765543 346778888888888777777777777888888888888776676665 67778888888887764
Q ss_pred CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccE
Q 045580 495 PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG 574 (764)
Q Consensus 495 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 574 (764)
..+. ..++.|+.
T Consensus 184 ~~~~--------------------------------------------------------------------~~l~~L~~ 195 (487)
T 3oja_A 184 VKGQ--------------------------------------------------------------------VVFAKLKT 195 (487)
T ss_dssp EECC--------------------------------------------------------------------CCCTTCCE
T ss_pred cccc--------------------------------------------------------------------ccCCCCCE
Confidence 3110 01346777
Q ss_pred EEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc-ccCcccccCCCCCCeEecc
Q 045580 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS-GQIPPQLTELNFLSNFNVS 650 (764)
Q Consensus 575 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls 650 (764)
|+|++|++++ +|..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 196 L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 196 LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8888888775 44447777778888888887774 6767777777888888888777 6667777777777777765
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.7e-28 Score=279.33 Aligned_cols=375 Identities=15% Similarity=0.126 Sum_probs=232.8
Q ss_pred cCCCCCEEEccCCcCccCC--CCCCCCCCccEEEccCC-CCCCCCChhHhhcCCCCcEEEcccCCCCccCCcccc----C
Q 045580 216 NNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRIDISHN-KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMS----E 288 (764)
Q Consensus 216 ~l~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~----~ 288 (764)
.+++|++|+|++|.+++.. .+...+++|++|++++| .+.......+...+++|++|++++|.+++..+.++. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4445555555555443210 00012445555555555 332221223333467777777777765544333332 5
Q ss_pred CCCCCEEECCCCc--ccccCchhhhhCCCCCCEEEeecc-ccccee-ecCCCCCCceEEccccc-------CCCcccccc
Q 045580 289 MKRLESLDLSSNN--FSGELPRQFLSGCFSLSFLSLSDN-HLQGEV-VFPNSTNLCWLYLNNNH-------FSGKIQDGL 357 (764)
Q Consensus 289 l~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~~L~~L~L~~n~-------l~~~~~~~l 357 (764)
+++|++|++++|. +.......+...+++|+.|++++| .+.+.. .+..+++|+.|++..+. +.+ ++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence 5677777777765 211111222344677777777776 333322 34456677777755443 232 33467
Q ss_pred cCCCCCCEE-eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc--cCCCccEEeccCCccccc-cchhhcCCCC
Q 045580 358 SKATSLLEL-DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGS-IPGALRRSSS 433 (764)
Q Consensus 358 ~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~~~ 433 (764)
.++++|+.+ .+.+... +.++..+..+++|++|++++|.+++.....+ .+++|+.|++++| +... ++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 788888888 4444332 2455555678899999999988664333222 6788999999888 3322 3333345889
Q ss_pred CCEEEcc---------CCcCCCcchhhh-hcCCCccEEEccCCcCCccCCcccc-CCCCCCEEeCC--C----CcCcCCc
Q 045580 434 LTVLDLR---------DNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPNQLC-HLSLLNILDLS--Y----NKFNGPI 496 (764)
Q Consensus 434 L~~L~L~---------~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~~ 496 (764)
|++|++. .+.+++.....+ ..+++|+.|.+..|.+++..+..+. .+++|+.|+++ + +.+++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 9999984 345554433334 3589999999999998876666554 58899999998 3 3333111
Q ss_pred Ch-hhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEE
Q 045580 497 PV-CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGL 575 (764)
Q Consensus 497 p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 575 (764)
.. .+..+ ...+++|+.|
T Consensus 420 ~~~~~~~l--------------------------------------------------------------~~~~~~L~~L 437 (594)
T 2p1m_B 420 LDIGFGAI--------------------------------------------------------------VEHCKDLRRL 437 (594)
T ss_dssp THHHHHHH--------------------------------------------------------------HHHCTTCCEE
T ss_pred hhhHHHHH--------------------------------------------------------------HhhCCCccEE
Confidence 00 00000 0125589999
Q ss_pred EcccCcccccCCccccC-ccccceecccccccccccCccc-cCCCCCCEEECcCCcCcccCcc-cccCCCCCCeEeccCC
Q 045580 576 DFSCNELTGDIPSEIGS-LSEIRALNLSHNFLSGSIPQSL-SNLKMIESLDLSHNDLSGQIPP-QLTELNFLSNFNVSYN 652 (764)
Q Consensus 576 dLs~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N 652 (764)
++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|++|++++|
T Consensus 438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 9987 777766666665 8999999999999987766665 6789999999999999765544 4455899999999999
Q ss_pred cccc
Q 045580 653 HLSG 656 (764)
Q Consensus 653 ~l~g 656 (764)
+++.
T Consensus 517 ~~~~ 520 (594)
T 2p1m_B 517 SVSF 520 (594)
T ss_dssp CCBH
T ss_pred CCCH
Confidence 8843
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-26 Score=240.68 Aligned_cols=250 Identities=22% Similarity=0.229 Sum_probs=147.7
Q ss_pred ccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCccccccc-------
Q 045580 286 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS------- 358 (764)
Q Consensus 286 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~------- 358 (764)
++..++|+.|++++|.+ .+|..+... |+.|++++|.+... .++..+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~---------------------~~~~~~~~~~~~~~ 92 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAA---------------------RIPSRILFGALRVL 92 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEE---------------------ECBHHHHHHHHHHH
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCC---------------------CcCHHHHHHHHHhc
Confidence 45556777778888777 667655432 56666666655321 1111111
Q ss_pred CCCCCCEEeCcCCccCCCccccc--cCCCCCCEEECcCCCCCCCCCCcc-cC-----CCccEEeccCCccccccchhhcC
Q 045580 359 KATSLLELDLSNNMLYGQIPHWF--GNLSGLQFLDISENQLSGSVPSSF-NL-----SSLRRLYMHMNAFNGSIPGALRR 430 (764)
Q Consensus 359 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~-~~-----~~L~~L~l~~n~l~~~~~~~~~~ 430 (764)
++++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+ .+ ++|++|++++|++.+..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 34444445555554444444433 4455555555555555544 3333 22 55566666666665555556666
Q ss_pred CCCCCEEEccCCcCCCc--chhhh--hcCCCccEEEccCCcCCc--cCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcc
Q 045580 431 SSSLTVLDLRDNQFSGS--IPIWI--NEFSYLGILLLRGNQLKG--NIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANV 503 (764)
Q Consensus 431 ~~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 503 (764)
+++|++|++++|++.+. .|..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..|....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-- 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC--
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh--
Confidence 66666666666666544 23333 566677777777776662 112 2334567777777777777654431110
Q ss_pred hhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccc
Q 045580 504 TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELT 583 (764)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 583 (764)
..+++|+.|+|++|+++
T Consensus 250 ---------------------------------------------------------------~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 250 ---------------------------------------------------------------DWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp ---------------------------------------------------------------CCCTTCCEEECTTSCCS
T ss_pred ---------------------------------------------------------------hhcCCCCEEECCCCccC
Confidence 01346777888888877
Q ss_pred ccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580 584 GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632 (764)
Q Consensus 584 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 632 (764)
.+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|++++
T Consensus 267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 -QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6777666 7788888888888855 55 7888888888888888875
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=240.84 Aligned_cols=237 Identities=22% Similarity=0.179 Sum_probs=138.4
Q ss_pred ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580 243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 322 (764)
Q Consensus 243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l 322 (764)
++..+++.+.+. ..+..++..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 344555555554 4444555556678888888888877666777888888888888888774433 466777777777
Q ss_pred ecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC
Q 045580 323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP 402 (764)
Q Consensus 323 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 402 (764)
++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 88 s~n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 88 NNNYVQELL---VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp CSSEEEEEE---ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred cCCcccccc---CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 777766443 2356667777777666544332 4556666666666665555556666666666666666655444
Q ss_pred Ccc--cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCC
Q 045580 403 SSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS 480 (764)
Q Consensus 403 ~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 480 (764)
..+ .+++|+.|++++|.+++..+ ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 433 34555555555555543311 1234555555555555553 2333445555555555555555 3444444455
Q ss_pred CCCEEeCCCCcCc
Q 045580 481 LLNILDLSYNKFN 493 (764)
Q Consensus 481 ~L~~L~Ls~n~l~ 493 (764)
+|+.|++++|+++
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 5555555555444
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.4e-24 Score=222.67 Aligned_cols=210 Identities=22% Similarity=0.218 Sum_probs=143.1
Q ss_pred CCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEcc
Q 045580 386 GLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR 464 (764)
Q Consensus 386 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 464 (764)
+|++|++++|.+++..+..+ .+++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444333 45555555555555554445556666666666776666665555666666777777777
Q ss_pred CCcCCccCCccccCCCCCCEEeCCCCcCcCC-cChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccc
Q 045580 465 GNQLKGNIPNQLCHLSLLNILDLSYNKFNGP-IPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH 543 (764)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 543 (764)
+|++++..+..+..+++|++|++++|.+++. +|..+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 7776655555666777777777777777642 3544433
Q ss_pred ccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc----eecccccccccccCccccCCCC
Q 045580 544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR----ALNLSHNFLSGSIPQSLSNLKM 619 (764)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~ 619 (764)
+++|+.|++++|++++..+..+..+++|+ .|++++|++++..+..+. ..+
T Consensus 148 -------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~ 201 (276)
T 2z62_A 148 -------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIR 201 (276)
T ss_dssp -------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCC
T ss_pred -------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCc
Confidence 23677777777777766666777666666 788899988865555444 458
Q ss_pred CCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCC
Q 045580 620 IESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAG 662 (764)
Q Consensus 620 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~ 662 (764)
|+.|++++|++++..+..+..+++|+.|++++|+++|.+|...
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 9999999999997777778899999999999999999998653
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.6e-26 Score=252.29 Aligned_cols=220 Identities=21% Similarity=0.155 Sum_probs=191.6
Q ss_pred CCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEE
Q 045580 359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLD 438 (764)
Q Consensus 359 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 438 (764)
.+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| ...+++|+.|++++|.+++..+ .++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 34589999999999998888999999999999999999997766 3389999999999999986443 38999999
Q ss_pred ccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccc
Q 045580 439 LRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLW 518 (764)
Q Consensus 439 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 518 (764)
+++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------- 166 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------- 166 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence 999999976554 4689999999999999988989999999999999999999877665531
Q ss_pred cccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccce
Q 045580 519 ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRA 598 (764)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 598 (764)
.++.|+.|+|++|.+++. | .+..+++|+.
T Consensus 167 -------------------------------------------------~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~ 195 (487)
T 3oja_A 167 -------------------------------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT 195 (487)
T ss_dssp -------------------------------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred -------------------------------------------------hCCcccEEecCCCccccc-c-ccccCCCCCE
Confidence 145899999999999976 3 2446999999
Q ss_pred ecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580 599 LNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 599 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 656 (764)
|+|++|++++ +|..++.+++|+.|||++|.+++ +|..+..+++|+.|++++|++.|
T Consensus 196 L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 196 LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp EECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred EECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 9999999996 55559999999999999999996 78889999999999999999984
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.1e-23 Score=211.59 Aligned_cols=207 Identities=22% Similarity=0.259 Sum_probs=155.8
Q ss_pred CCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCC
Q 045580 387 LQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466 (764)
Q Consensus 387 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 466 (764)
.+.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|+++...+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4555555555553 332221 45666666666666555556777777777777777777554555677777888888888
Q ss_pred cCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccc
Q 045580 467 QLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYK 546 (764)
Q Consensus 467 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 546 (764)
++++..+..+..+++|++|++++|++++..|..+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------- 131 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------- 131 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence 777655666777888888888888877655544432
Q ss_pred cCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECc
Q 045580 547 ASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626 (764)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 626 (764)
+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 132 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 132 ----------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp ----------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 3478888888888886666678899999999999999997777789999999999999
Q ss_pred CCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 627 HNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 627 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
+|++++..+..+..+++|+.|++++|++.|.++..
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 99999877778999999999999999999988753
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.1e-23 Score=213.80 Aligned_cols=226 Identities=24% Similarity=0.232 Sum_probs=178.4
Q ss_pred EcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccc
Q 045580 343 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421 (764)
Q Consensus 343 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~ 421 (764)
+..+..+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|+.|++++|.++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33344444 3444332 568888888888886666678888888888888888887766666 7888888888888888
Q ss_pred cccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCcc-CCccccCCCCCCEEeCCCCcCcCCcChhh
Q 045580 422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN-IPNQLCHLSLLNILDLSYNKFNGPIPVCF 500 (764)
Q Consensus 422 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 500 (764)
+..+..+.++++|++|++++|++++..+..++.+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 77778888999999999999999877666788999999999999999864 58889999999999999999987655555
Q ss_pred hcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccccccc-EEEccc
Q 045580 501 ANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMT-GLDFSC 579 (764)
Q Consensus 501 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~ 579 (764)
..+. .++.+. .|++++
T Consensus 170 ~~l~---------------------------------------------------------------~L~~l~l~L~ls~ 186 (276)
T 2z62_A 170 RVLH---------------------------------------------------------------QMPLLNLSLDLSL 186 (276)
T ss_dssp HHHH---------------------------------------------------------------TCTTCCEEEECCS
T ss_pred hhhh---------------------------------------------------------------hccccceeeecCC
Confidence 4432 012233 799999
Q ss_pred CcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCc
Q 045580 580 NELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP 635 (764)
Q Consensus 580 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 635 (764)
|++++..+..+ ...+|+.|++++|++++..+..++.+++|+.|++++|++++..|
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99996555544 44589999999999997777778999999999999999997654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.6e-23 Score=211.44 Aligned_cols=207 Identities=21% Similarity=0.208 Sum_probs=162.4
Q ss_pred ccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccE
Q 045580 381 FGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGI 460 (764)
Q Consensus 381 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 460 (764)
+.+++++++++++++.++.. |..+ .+.++.|++++|.+++..+..|..+++|+.|++++|++++..+ . +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcC-CCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence 44556666666666666633 3222 2567777777777777777778888888888888888875433 2 67888888
Q ss_pred EEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccc
Q 045580 461 LLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSE 540 (764)
Q Consensus 461 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (764)
|++++|+++ .+|..+..+++|++|++++|++++..|..|..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 888888888 67777888888999999999888655555543
Q ss_pred cccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCC
Q 045580 541 VKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI 620 (764)
Q Consensus 541 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 620 (764)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|
T Consensus 123 ----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 123 ----------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp ----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 3478889999999987777778899999999999999996666677889999
Q ss_pred CEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCC
Q 045580 621 ESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659 (764)
Q Consensus 621 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 659 (764)
+.|+|++|+++ .+|..+..+..|+.+++++|++.|.|.
T Consensus 175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 99999999998 688888888999999999999998764
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.9e-23 Score=212.00 Aligned_cols=87 Identities=24% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeC
Q 045580 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDL 487 (764)
Q Consensus 408 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 487 (764)
++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 33333333333333333333333444444444444444333333344444444444444444333333344444444444
Q ss_pred CCCcCcC
Q 045580 488 SYNKFNG 494 (764)
Q Consensus 488 s~n~l~~ 494 (764)
++|++++
T Consensus 189 ~~N~l~~ 195 (272)
T 3rfs_A 189 YQNQLKS 195 (272)
T ss_dssp CSSCCSC
T ss_pred CCCcCCc
Confidence 4444443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7e-23 Score=209.14 Aligned_cols=210 Identities=20% Similarity=0.204 Sum_probs=160.3
Q ss_pred cCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEE
Q 045580 358 SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVL 437 (764)
Q Consensus 358 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 437 (764)
..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. +....+++|++|++++|.+++..+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345556666666665542 2 2355666666666666666642 222266777777777777776666678888999999
Q ss_pred EccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccc
Q 045580 438 DLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVL 517 (764)
Q Consensus 438 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~ 517 (764)
++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 179 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------------- 179 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC---------------
Confidence 99999999777777888999999999999999777777888999999999999988655544433
Q ss_pred ccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc
Q 045580 518 WETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR 597 (764)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 597 (764)
+++|+.|++++|++++..|..++.+++|+
T Consensus 180 ---------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 180 ---------------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp ---------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---------------------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 34788999999999988887889999999
Q ss_pred eecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCC
Q 045580 598 ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNF 643 (764)
Q Consensus 598 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 643 (764)
.|++++|.+.+. +++|+.|+++.|.++|.+|..++.+..
T Consensus 209 ~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 209 YIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp EEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 999999988754 446888999999999999988877654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6.7e-22 Score=201.70 Aligned_cols=203 Identities=25% Similarity=0.309 Sum_probs=139.3
Q ss_pred CCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD 441 (764)
Q Consensus 363 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 441 (764)
.+.++++++.++ .+|..+. +++++|++++|++++..+..+ .+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555554 2333332 345555555555554444444 555666666666666544445556677777777777
Q ss_pred CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccc
Q 045580 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETT 521 (764)
Q Consensus 442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 521 (764)
|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------- 155 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------------------- 155 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-------------------
Confidence 7777555566677777777777777777666666777788888888888777544333332
Q ss_pred ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc
Q 045580 522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL 601 (764)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L 601 (764)
+++|+.|++++|++++..+..+..+++|+.|+|
T Consensus 156 -----------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 156 -----------------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 346788888888888766677888999999999
Q ss_pred cccccccccCccccCCCCCCEEECcCCcCcccC
Q 045580 602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634 (764)
Q Consensus 602 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i 634 (764)
++|++++..+..+..+++|+.|+|++|++....
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 999999766677889999999999999987543
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7e-24 Score=226.24 Aligned_cols=254 Identities=22% Similarity=0.210 Sum_probs=152.1
Q ss_pred EEcccccCCCcccccccCCCCCCEEeCcCCccCCCcc----ccccCCC-CCCEEECcCCCCCCCCCCcc-cC-----CCc
Q 045580 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP----HWFGNLS-GLQFLDISENQLSGSVPSSF-NL-----SSL 410 (764)
Q Consensus 342 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~-~~-----~~L 410 (764)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+ .+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666666666655555557777777776665544 5556666 67777777776665555444 22 667
Q ss_pred cEEeccCCccccccchh----hcCC-CCCCEEEccCCcCCCcchhhhh----c-CCCccEEEccCCcCCccCC----ccc
Q 045580 411 RRLYMHMNAFNGSIPGA----LRRS-SSLTVLDLRDNQFSGSIPIWIN----E-FSYLGILLLRGNQLKGNIP----NQL 476 (764)
Q Consensus 411 ~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~L~~n~l~~~~p~~~~----~-l~~L~~L~L~~n~l~~~~~----~~~ 476 (764)
++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+. . .++|++|++++|++++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777766555443 3333 6777777777777655554432 2 2477777777777764332 333
Q ss_pred cCCC-CCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEE
Q 045580 477 CHLS-LLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEF 555 (764)
Q Consensus 477 ~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 555 (764)
..++ +|++|++++|++++..+..+...-
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------------------------- 191 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------------------------- 191 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------------------
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHH---------------------------------------------------
Confidence 4444 777777777777655544433210
Q ss_pred eecccccccccccc-ccccEEEcccCccccc----CCccccCc-cccceecccccccccccC----ccccCCCCCCEEEC
Q 045580 556 MTKKRYESYKGDIL-NYMTGLDFSCNELTGD----IPSEIGSL-SEIRALNLSHNFLSGSIP----QSLSNLKMIESLDL 625 (764)
Q Consensus 556 ~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~LdL 625 (764)
... ++|+.|||++|++++. ++..+..+ ++|+.|+|++|++++..+ ..+..+++|+.|+|
T Consensus 192 -----------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 192 -----------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp -----------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred -----------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 001 2577777777777652 44444443 467777777777765433 33455677777777
Q ss_pred cCCcCccc-------CcccccCCCCCCeEeccCCccccC
Q 045580 626 SHNDLSGQ-------IPPQLTELNFLSNFNVSYNHLSGP 657 (764)
Q Consensus 626 s~N~l~~~-------ip~~l~~l~~L~~L~ls~N~l~g~ 657 (764)
++|.+.+. ++..+..+++|+.||+++|++.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 77774432 233556667777777777777654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.6e-22 Score=202.58 Aligned_cols=204 Identities=24% Similarity=0.223 Sum_probs=173.9
Q ss_pred cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEE
Q 045580 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL 485 (764)
Q Consensus 406 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 485 (764)
.+++++.++++++.++ .+|..+ .++++.|++++|++++..+..+..+++|++|++++|++++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 6788999999999998 455444 36899999999999988889999999999999999999964332 789999999
Q ss_pred eCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580 486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565 (764)
Q Consensus 486 ~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 565 (764)
++++|+++ .+|..+..
T Consensus 83 ~Ls~N~l~-~l~~~~~~--------------------------------------------------------------- 98 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQT--------------------------------------------------------------- 98 (290)
T ss_dssp ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence 99999997 44543322
Q ss_pred ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCC
Q 045580 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645 (764)
Q Consensus 566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 645 (764)
+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+
T Consensus 99 ---l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 99 ---LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp ---CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred ---CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 45799999999999987788999999999999999999987778889999999999999999977777789999999
Q ss_pred eEeccCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q 045580 646 NFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 646 ~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~ 681 (764)
+|++++|+++...+.......+....+.|||+.|..
T Consensus 176 ~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp EEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred EEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 999999999954333355556777888999999863
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.5e-24 Score=230.93 Aligned_cols=240 Identities=18% Similarity=0.232 Sum_probs=158.8
Q ss_pred cccccCCCCCCEEeCcCCccCCCcc----ccccCCCCCCEEECcCCCC---CCCCCCcc--------cCCCccEEeccCC
Q 045580 354 QDGLSKATSLLELDLSNNMLYGQIP----HWFGNLSGLQFLDISENQL---SGSVPSSF--------NLSSLRRLYMHMN 418 (764)
Q Consensus 354 ~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~~--------~~~~L~~L~l~~n 418 (764)
+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+ ++.+|..+ .+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3444555666666666666554322 2344566666666666432 22333221 4566677777777
Q ss_pred cccc----ccchhhcCCCCCCEEEccCCcCCCcchhhh----hcC---------CCccEEEccCCcCC-ccCC---cccc
Q 045580 419 AFNG----SIPGALRRSSSLTVLDLRDNQFSGSIPIWI----NEF---------SYLGILLLRGNQLK-GNIP---NQLC 477 (764)
Q Consensus 419 ~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~----~~l---------~~L~~L~L~~n~l~-~~~~---~~~~ 477 (764)
.+.+ .++..+..+++|+.|+|++|.+++..+..+ ..+ ++|++|++++|+++ +.++ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6665 356667777788888888887764433333 333 78888888888876 3333 3566
Q ss_pred CCCCCCEEeCCCCcCcCC-----cChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccc
Q 045580 478 HLSLLNILDLSYNKFNGP-----IPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRG 552 (764)
Q Consensus 478 ~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 552 (764)
.+++|+.|++++|+++.. +|..+
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l---------------------------------------------------- 212 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGL---------------------------------------------------- 212 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTG----------------------------------------------------
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHh----------------------------------------------------
Confidence 677888888888877521 00011
Q ss_pred eEEeeccccccccccccccccEEEcccCccc----ccCCccccCccccceecccccccccc----cCcccc--CCCCCCE
Q 045580 553 IEFMTKKRYESYKGDILNYMTGLDFSCNELT----GDIPSEIGSLSEIRALNLSHNFLSGS----IPQSLS--NLKMIES 622 (764)
Q Consensus 553 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~ 622 (764)
..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..+. .+++|+.
T Consensus 213 --------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 213 --------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp --------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred --------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence 11457888888888885 56778888888888888888888866 566663 3888899
Q ss_pred EECcCCcCcc----cCcccc-cCCCCCCeEeccCCccccCCC
Q 045580 623 LDLSHNDLSG----QIPPQL-TELNFLSNFNVSYNHLSGPTP 659 (764)
Q Consensus 623 LdLs~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~~p 659 (764)
|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999998887 477777 558888999999998887664
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.6e-21 Score=196.56 Aligned_cols=184 Identities=19% Similarity=0.211 Sum_probs=146.0
Q ss_pred CccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCC
Q 045580 409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488 (764)
Q Consensus 409 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 488 (764)
..+.++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666665 3443332 577888888888887777777888888888888888887777777888888888888
Q ss_pred CCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccc
Q 045580 489 YNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDI 568 (764)
Q Consensus 489 ~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (764)
+|++++..+..+..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 88887555444432
Q ss_pred cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648 (764)
Q Consensus 569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 648 (764)
+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..+..+++|++|+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 34788888999988876677788999999999999999977777899999999999999999988888899999999999
Q ss_pred ccCCccccCCCCC
Q 045580 649 VSYNHLSGPTPNA 661 (764)
Q Consensus 649 ls~N~l~g~~p~~ 661 (764)
+++|+++|.++..
T Consensus 186 l~~N~~~c~~~~~ 198 (251)
T 3m19_A 186 LFGNQFDCSRCEI 198 (251)
T ss_dssp CCSCCBCTTSTTH
T ss_pred eeCCceeCCcccc
Confidence 9999999875543
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.1e-23 Score=217.56 Aligned_cols=250 Identities=17% Similarity=0.205 Sum_probs=183.0
Q ss_pred CCceEEcccccCCCcccccccCC--CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCC-CCCcc-cCCCccEE
Q 045580 338 NLCWLYLNNNHFSGKIQDGLSKA--TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS-VPSSF-NLSSLRRL 413 (764)
Q Consensus 338 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~L~~L 413 (764)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+ .+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666654 3344455 6777888888877765554 45677888888888877654 44444 67788888
Q ss_pred eccCCccccccchhhcCCCCCCEEEccCC-cCCCc-chhhhhcCCCccEEEccCC-cCCcc-CCccccCCC-CCCEEeCC
Q 045580 414 YMHMNAFNGSIPGALRRSSSLTVLDLRDN-QFSGS-IPIWINEFSYLGILLLRGN-QLKGN-IPNQLCHLS-LLNILDLS 488 (764)
Q Consensus 414 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls 488 (764)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888887777778888899999999998 67753 6677888899999999999 88754 566677888 99999999
Q ss_pred CCc--Cc-CCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580 489 YNK--FN-GPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565 (764)
Q Consensus 489 ~n~--l~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 565 (764)
+|. ++ +.+|..+.
T Consensus 204 ~~~~~~~~~~l~~~~~---------------------------------------------------------------- 219 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVR---------------------------------------------------------------- 219 (336)
T ss_dssp SCGGGSCHHHHHHHHH----------------------------------------------------------------
T ss_pred CCcccCCHHHHHHHHh----------------------------------------------------------------
Confidence 984 43 22222221
Q ss_pred ccccccccEEEcccCc-ccccCCccccCccccceecccccc-cccccCccccCCCCCCEEECcCCcCcccCcccccCC-C
Q 045580 566 GDILNYMTGLDFSCNE-LTGDIPSEIGSLSEIRALNLSHNF-LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTEL-N 642 (764)
Q Consensus 566 ~~~l~~L~~LdLs~N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~ 642 (764)
.+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++. ..+..+ .
T Consensus 220 --~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~ 293 (336)
T 2ast_B 220 --RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKE 293 (336)
T ss_dssp --HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHH
T ss_pred --hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHh
Confidence 14578999999998 777888889999999999999995 43333336888999999999999 442 233444 3
Q ss_pred CCCeEeccCCccccCCCCC
Q 045580 643 FLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 643 ~L~~L~ls~N~l~g~~p~~ 661 (764)
.+..|++++|++++..|..
T Consensus 294 ~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 294 ALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp HSTTSEESCCCSCCTTCSS
T ss_pred hCcceEEecccCccccCCc
Confidence 4777889999999988754
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=209.06 Aligned_cols=204 Identities=21% Similarity=0.197 Sum_probs=140.2
Q ss_pred CCCCEEECcCCCCCCCCCCcc---cCCCccEEeccCCccccccc----hhhcCCCCCCEEEccCCcCCCcchhhhhcCCC
Q 045580 385 SGLQFLDISENQLSGSVPSSF---NLSSLRRLYMHMNAFNGSIP----GALRRSSSLTVLDLRDNQFSGSIPIWINEFSY 457 (764)
Q Consensus 385 ~~L~~L~L~~n~l~~~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 457 (764)
++|++|++++|.+++..|..+ .+++|++|++++|.+.+..+ ..+..+++|++|++++|++++..+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 335555555555544444432 34455555555555544332 23446777888888888887777777777888
Q ss_pred ccEEEccCCcCCcc--C--CccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhh
Q 045580 458 LGILLLRGNQLKGN--I--PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYN 533 (764)
Q Consensus 458 L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (764)
|++|++++|++.+. + +..+..+++|++|++++|+++. +|.....+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~----------------------------- 220 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALA----------------------------- 220 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHH-----------------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHH-----------------------------
Confidence 88888888877642 2 2234677889999999988852 221100000
Q ss_pred hhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc---cccceeccccccccccc
Q 045580 534 STLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL---SEIRALNLSHNFLSGSI 610 (764)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~~ 610 (764)
..+++|++|||++|++++.+|..++.+ ++|+.|+|++|+++ .+
T Consensus 221 ---------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l 266 (310)
T 4glp_A 221 ---------------------------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV 266 (310)
T ss_dssp ---------------------------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC
T ss_pred ---------------------------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-ch
Confidence 114578889999999998878888777 69999999999999 67
Q ss_pred CccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580 611 PQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 611 p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 656 (764)
|..+. ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 267 p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 267 PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 87775 7999999999999964 43 6788999999999999874
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=7.4e-23 Score=218.29 Aligned_cols=42 Identities=5% Similarity=0.036 Sum_probs=21.6
Q ss_pred cccEEEcccCccccc-------CCccccCccccceecccccccccccCc
Q 045580 571 YMTGLDFSCNELTGD-------IPSEIGSLSEIRALNLSHNFLSGSIPQ 612 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~-------ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 612 (764)
.|+.|+|++|.+.+. ++..+..+++|+.||+++|++.+..+.
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 455555555553221 233445555666666666666554443
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.9e-23 Score=225.19 Aligned_cols=247 Identities=16% Similarity=0.184 Sum_probs=149.3
Q ss_pred cCchhhhhCCCCCCEEEeeccccccee------ecCCCCCCceEEcccccC---CCcccccccCCCCCCEEeCcCCccCC
Q 045580 305 ELPRQFLSGCFSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHF---SGKIQDGLSKATSLLELDLSNNMLYG 375 (764)
Q Consensus 305 ~~p~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~L~~n~l~~ 375 (764)
.++..+ ..+++|+.|++++|.+++.. .+..+++|++|++++|.+ ++.+|..+.
T Consensus 23 ~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~----------------- 84 (386)
T 2ca6_A 23 SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------- 84 (386)
T ss_dssp TTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------
T ss_pred HHHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------
Confidence 344433 45666777777766665432 244555555555555432 222232220
Q ss_pred CccccccCCCCCCEEECcCCCCCCC----CCCcc-cCCCccEEeccCCccccccchh----hcCC---------CCCCEE
Q 045580 376 QIPHWFGNLSGLQFLDISENQLSGS----VPSSF-NLSSLRRLYMHMNAFNGSIPGA----LRRS---------SSLTVL 437 (764)
Q Consensus 376 ~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~-~~~~L~~L~l~~n~l~~~~~~~----~~~~---------~~L~~L 437 (764)
.+...+..+++|++|+|++|.+++. ++..+ .+++|+.|++++|.+.+..+.. +..+ ++|++|
T Consensus 85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 0001123445555555555554431 22222 4455555555555554322222 2222 678888
Q ss_pred EccCCcCC-Ccch---hhhhcCCCccEEEccCCcCCc-----cCCccccCCCCCCEEeCCCCcCc----CCcChhhhcch
Q 045580 438 DLRDNQFS-GSIP---IWINEFSYLGILLLRGNQLKG-----NIPNQLCHLSLLNILDLSYNKFN----GPIPVCFANVT 504 (764)
Q Consensus 438 ~L~~n~l~-~~~p---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~ 504 (764)
++++|+++ +.++ ..+..+++|++|++++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-- 242 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-- 242 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--
Confidence 88888876 3344 456677888888888888772 23436777888888888888875 222322221
Q ss_pred hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580 505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG 584 (764)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 584 (764)
+++|+.|+|++|++++
T Consensus 243 ----------------------------------------------------------------~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 243 ----------------------------------------------------------------WPNLRELGLNDCLLSA 258 (386)
T ss_dssp ----------------------------------------------------------------CTTCCEEECTTCCCCH
T ss_pred ----------------------------------------------------------------CCCcCEEECCCCCCch
Confidence 3468888888888876
Q ss_pred c----CCccc--cCccccceeccccccccc----ccCccc-cCCCCCCEEECcCCcCcccCc
Q 045580 585 D----IPSEI--GSLSEIRALNLSHNFLSG----SIPQSL-SNLKMIESLDLSHNDLSGQIP 635 (764)
Q Consensus 585 ~----ip~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~LdLs~N~l~~~ip 635 (764)
. +|..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5 56666 448899999999999997 488777 668999999999999997764
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=204.27 Aligned_cols=157 Identities=23% Similarity=0.260 Sum_probs=97.4
Q ss_pred CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCc--ch--hhhhcCCCccEEEccCCcCCccCCc----cccC
Q 045580 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS--IP--IWINEFSYLGILLLRGNQLKGNIPN----QLCH 478 (764)
Q Consensus 407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 478 (764)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 44555555555555544555555566666666666665432 11 223456666666666666652 222 2355
Q ss_pred CCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeec
Q 045580 479 LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTK 558 (764)
Q Consensus 479 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 558 (764)
+++|++||+++|++++..|..+..+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~------------------------------------------------------ 248 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCM------------------------------------------------------ 248 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCC------------------------------------------------------
T ss_pred CCCCCEEECCCCCCCccchhhHHhcc------------------------------------------------------
Confidence 67777777777777766554443221
Q ss_pred cccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580 559 KRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632 (764)
Q Consensus 559 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 632 (764)
.+++|+.|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus 249 ---------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 ---------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ---------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ---------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 0236777888888887 6677664 6888888888888853 43 5777888888888888874
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.2e-21 Score=191.33 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=44.4
Q ss_pred ccc-EEEcccCcccccCCccccCccccceecccccc-cccccCccccCC-CCCCEEECcCCcCcccCcccccCCCCCCeE
Q 045580 571 YMT-GLDFSCNELTGDIPSEIGSLSEIRALNLSHNF-LSGSIPQSLSNL-KMIESLDLSHNDLSGQIPPQLTELNFLSNF 647 (764)
Q Consensus 571 ~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 647 (764)
.|+ .|++++|+++ .+|......++|+.|++++|+ +++..+..++++ ++|+.||+++|++++ +|.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 455 5666666665 344333233566666666663 664445556666 666666666666663 3332 45566666
Q ss_pred eccCC
Q 045580 648 NVSYN 652 (764)
Q Consensus 648 ~ls~N 652 (764)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66654
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9.8e-21 Score=196.72 Aligned_cols=192 Identities=22% Similarity=0.309 Sum_probs=117.0
Q ss_pred CCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEc
Q 045580 384 LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLL 463 (764)
Q Consensus 384 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 463 (764)
+++|++|++++|.++. ++....+++|+.|++++|.+.+..+ +..+++|+.|++++|++++. + .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 3444444444444442 2221244455555555555543332 55666666666666666532 2 4566666666666
Q ss_pred cCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccc
Q 045580 464 RGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH 543 (764)
Q Consensus 464 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 543 (764)
++|++++ ++. +..+++|+.|++++|.+++..+ +..
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~----------------------------------------- 149 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAG----------------------------------------- 149 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGG-----------------------------------------
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccC-----------------------------------------
Confidence 6666664 232 6666777777777776654322 111
Q ss_pred ccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEE
Q 045580 544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESL 623 (764)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 623 (764)
+++|+.|++++|++++. +. +..+++|+.|++++|++++..+ +..+++|+.|
T Consensus 150 -------------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 150 -------------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEV 200 (308)
T ss_dssp -------------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred -------------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEE
Confidence 34677777777777743 33 7777778888888887775443 6777888888
Q ss_pred ECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580 624 DLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 624 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 656 (764)
++++|++++..| +..+++|+.|++++|++++
T Consensus 201 ~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred EccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 888888875443 6777888888888888766
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1e-21 Score=207.45 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=84.4
Q ss_pred CCEEECCCCcccccCchhhhhCC--CCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCc-ccccccCCCCCCEEe
Q 045580 292 LESLDLSSNNFSGELPRQFLSGC--FSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGK-IQDGLSKATSLLELD 367 (764)
Q Consensus 292 L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 367 (764)
++.++++++.+. + ..+..+ +.++.|++++|.+.+.. .+..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555555443 1 112222 44444544444444322 223344455555555544433 444445555555555
Q ss_pred CcCCccCCCccccccCCCCCCEEECcCC-CCCCC-CCCcc-cCCCccEEeccCC-ccccc-cchhhcCCC-CCCEEEccC
Q 045580 368 LSNNMLYGQIPHWFGNLSGLQFLDISEN-QLSGS-VPSSF-NLSSLRRLYMHMN-AFNGS-IPGALRRSS-SLTVLDLRD 441 (764)
Q Consensus 368 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~-~~~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~L~~ 441 (764)
+++|.+++..+..+..+++|++|++++| .+++. ++..+ .+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 5555554444445555555555555555 33321 22212 3344444444444 33322 233334444 444444444
Q ss_pred C--cCC-CcchhhhhcCCCccEEEccCCc-CCccCCccccCCCCCCEEeCCCC
Q 045580 442 N--QFS-GSIPIWINEFSYLGILLLRGNQ-LKGNIPNQLCHLSLLNILDLSYN 490 (764)
Q Consensus 442 n--~l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 490 (764)
| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4 222 2233333444444444444444 33333334444444444444444
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.9e-21 Score=190.94 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=158.0
Q ss_pred CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCC-CCCCCCCcc-cCCCccEEeccC-CccccccchhhcCCCCCCEE
Q 045580 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ-LSGSVPSSF-NLSSLRRLYMHM-NAFNGSIPGALRRSSSLTVL 437 (764)
Q Consensus 361 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L 437 (764)
++|++|++++|.+++..+..|.++++|++|++++|+ +++..+..+ .+++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378888888888886666678888888888888886 776666566 788888888887 88887667788889999999
Q ss_pred EccCCcCCCcchhhhhcCCCcc---EEEccCC-cCCccCCccccCCCCCC-EEeCCCCcCcCCcChhhhcchhhcccccC
Q 045580 438 DLRDNQFSGSIPIWINEFSYLG---ILLLRGN-QLKGNIPNQLCHLSLLN-ILDLSYNKFNGPIPVCFANVTLWTLGQAA 512 (764)
Q Consensus 438 ~L~~n~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~ 512 (764)
++++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ .|++++|+++ .+|.....
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~---------- 177 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN---------- 177 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT----------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC----------
Confidence 999999885 665 77888888 9999999 88876677788999999 9999999987 44432111
Q ss_pred CccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCc-ccccCCcccc
Q 045580 513 GSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNE-LTGDIPSEIG 591 (764)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~ip~~l~ 591 (764)
.++|+.|++++|+ +++..+..+.
T Consensus 178 --------------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 178 --------------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp --------------------------------------------------------TCEEEEEECTTCTTCCEECTTTTT
T ss_pred --------------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhh
Confidence 1368899999995 9877778899
Q ss_pred Cc-cccceecccccccccccCccccCCCCCCEEECcCCc
Q 045580 592 SL-SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHND 629 (764)
Q Consensus 592 ~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 629 (764)
.+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 202 ~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred ccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 99 999999999999994 5544 67899999998864
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.4e-20 Score=187.85 Aligned_cols=180 Identities=23% Similarity=0.272 Sum_probs=137.3
Q ss_pred CCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccC
Q 045580 386 GLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRG 465 (764)
Q Consensus 386 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 465 (764)
+.++++++++.++. +|..+. +.++.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccc-cCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34555666655553 232221 4566777777777666666777778888888888888877777778888888888888
Q ss_pred CcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccccc
Q 045580 466 NQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFY 545 (764)
Q Consensus 466 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 545 (764)
|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------- 129 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------- 129 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence 8888666677788888888888888887554443332
Q ss_pred ccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEEC
Q 045580 546 KASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDL 625 (764)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL 625 (764)
+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..+..+++|+.|+|
T Consensus 130 -----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 130 -----------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp -----------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred -----------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 347888999999998777778999999999999999999888888999999999999
Q ss_pred cCCcCccc
Q 045580 626 SHNDLSGQ 633 (764)
Q Consensus 626 s~N~l~~~ 633 (764)
++|++++.
T Consensus 187 ~~N~~~c~ 194 (251)
T 3m19_A 187 FGNQFDCS 194 (251)
T ss_dssp CSCCBCTT
T ss_pred eCCceeCC
Confidence 99999876
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.9e-20 Score=194.47 Aligned_cols=161 Identities=22% Similarity=0.283 Sum_probs=103.1
Q ss_pred ecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC
Q 045580 323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP 402 (764)
Q Consensus 323 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 402 (764)
..+.+.+......+++|+.|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +
T Consensus 27 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~ 101 (308)
T 1h6u_A 27 GKSNVTDTVTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S 101 (308)
T ss_dssp TCSSTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G
T ss_pred CCCCcCceecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h
Confidence 334444444444556677777777766642 3 46677777777777777765433 77777777777777777643 3
Q ss_pred CcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580 403 SSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482 (764)
Q Consensus 403 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 482 (764)
....+++|+.|++++|.+++. + .+..+++|+.|++++|++++..+ +..+++|++|++++|++++. +. +..+++|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L 175 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKL 175 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCC
Confidence 222666777777777776643 2 26667777777777777764433 66677777777777777643 22 6667777
Q ss_pred CEEeCCCCcCcC
Q 045580 483 NILDLSYNKFNG 494 (764)
Q Consensus 483 ~~L~Ls~n~l~~ 494 (764)
+.|++++|++++
T Consensus 176 ~~L~l~~n~l~~ 187 (308)
T 1h6u_A 176 TTLKADDNKISD 187 (308)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCccCc
Confidence 777777776654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.9e-19 Score=190.74 Aligned_cols=239 Identities=19% Similarity=0.185 Sum_probs=187.5
Q ss_pred cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCE-EEe
Q 045580 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF-LSL 322 (764)
Q Consensus 244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~-L~l 322 (764)
+.++.++++++ ++|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46777888887 888765 4689999999999986556689999999999999999877788877788888775 556
Q ss_pred eccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcC-CccCCCccccccCCC-CCCEEECcCCCCC
Q 045580 323 SDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN-NMLYGQIPHWFGNLS-GLQFLDISENQLS 398 (764)
Q Consensus 323 ~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 398 (764)
..|+++... .+..+++|++|++++|.++...+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 678888764 688899999999999999877777777778888899866 566655555676664 6889999999999
Q ss_pred CCCCCcccCCCccEEeccC-CccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc
Q 045580 399 GSVPSSFNLSSLRRLYMHM-NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC 477 (764)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 477 (764)
...+..+...+|+.+++.+ |.++...+..|.++++|++||+++|+++. +|. ..+.+|+.|.+.++.-...+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-Cch
Confidence 7777777778899999986 56664445678999999999999999994 443 234566666665554444666 478
Q ss_pred CCCCCCEEeCCCC
Q 045580 478 HLSLLNILDLSYN 490 (764)
Q Consensus 478 ~l~~L~~L~Ls~n 490 (764)
.+++|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 8999999999765
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.5e-19 Score=173.89 Aligned_cols=131 Identities=26% Similarity=0.238 Sum_probs=59.0
Q ss_pred CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL 439 (764)
Q Consensus 361 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 439 (764)
++|++|++++|.+++..+..|..+++|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 355555555555554444445555555555555555554333333 3444444444444444333333444444444444
Q ss_pred cCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCc
Q 045580 440 RDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491 (764)
Q Consensus 440 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 491 (764)
++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 4444443333333444444444444444443333333334444444444443
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=182.18 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=127.2
Q ss_pred CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC
Q 045580 435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG 513 (764)
Q Consensus 435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 513 (764)
+.+++++|.++ .+|..+. +.+++|++++|++++..+ ..+..+++|+.|++++|++++..|..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46777777776 3554432 346777788887776544 34677888888888888887655544443
Q ss_pred ccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc
Q 045580 514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL 593 (764)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 593 (764)
+++|+.|+|++|++++..|..|+.+
T Consensus 80 -------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 80 -------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred -------------------------------------------------------CCCCCEEECCCCccCccCHhHhcCC
Confidence 3478888888888887777889999
Q ss_pred cccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 594 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.++..
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 99999999999999888999999999999999999999988999999999999999999999988854
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.8e-19 Score=188.44 Aligned_cols=239 Identities=18% Similarity=0.163 Sum_probs=147.8
Q ss_pred ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCC-cc-cCCCccE-Eecc
Q 045580 340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS-SF-NLSSLRR-LYMH 416 (764)
Q Consensus 340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~~~L~~-L~l~ 416 (764)
++++.+++.++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.++. .| +++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555556665 344433 24677777777777644445677777777777777776655443 34 5666554 4555
Q ss_pred CCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccC-CcCCccCCccccCCC-CCCEEeCCCCcCcC
Q 045580 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRG-NQLKGNIPNQLCHLS-LLNILDLSYNKFNG 494 (764)
Q Consensus 417 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 494 (764)
.|+++...|..|..+++|+.|++++|++++..+..+....++..+++.+ +++....+..+..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766677777777788888888777755555555556677777755 455544444555553 57778888887763
Q ss_pred CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccE
Q 045580 495 PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG 574 (764)
Q Consensus 495 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 574 (764)
..+..+. ..+++.
T Consensus 169 i~~~~f~-------------------------------------------------------------------~~~L~~ 181 (350)
T 4ay9_X 169 IHNSAFN-------------------------------------------------------------------GTQLDE 181 (350)
T ss_dssp ECTTSST-------------------------------------------------------------------TEEEEE
T ss_pred CChhhcc-------------------------------------------------------------------ccchhH
Confidence 2222211 124667
Q ss_pred EEccc-CcccccCC-ccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCC
Q 045580 575 LDFSC-NELTGDIP-SEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN 652 (764)
Q Consensus 575 LdLs~-N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 652 (764)
|++++ |.++ .+| ..|+.+++|+.|+|++|+|+...+.. +.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 182 l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 182 LNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp EECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 77764 4555 444 45678888888888888887433333 3455555554444334566 3677788888888765
Q ss_pred c
Q 045580 653 H 653 (764)
Q Consensus 653 ~ 653 (764)
.
T Consensus 257 ~ 257 (350)
T 4ay9_X 257 S 257 (350)
T ss_dssp H
T ss_pred c
Confidence 4
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.4e-19 Score=199.80 Aligned_cols=134 Identities=29% Similarity=0.442 Sum_probs=68.3
Q ss_pred CCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccC
Q 045580 338 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM 417 (764)
Q Consensus 338 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 417 (764)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 56666666666664 34333 255666666666665 344 334566666666666654 333 21 1555555555
Q ss_pred CccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCc
Q 045580 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493 (764)
Q Consensus 418 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 493 (764)
|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 55554 332 34555555555555553 332 33455555555555543 333 32 44555555555444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.9e-19 Score=199.05 Aligned_cols=189 Identities=26% Similarity=0.343 Sum_probs=146.7
Q ss_pred CCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD 441 (764)
Q Consensus 362 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 441 (764)
+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| -.+++|+.|++++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 89999999999986 66655 378999999999988 455 346888999999998886 665 554 889999999
Q ss_pred CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccc
Q 045580 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETT 521 (764)
Q Consensus 442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 521 (764)
|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------- 179 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------- 179 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence 98886 565 67888999999998885 555 46788889998888875 443 21
Q ss_pred ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcccc-----
Q 045580 522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEI----- 596 (764)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L----- 596 (764)
++|+.|+|++|+|+ .+|. +.. +|
T Consensus 180 ------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 180 ------------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE 207 (571)
T ss_dssp ------------------------------------------------TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred ------------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence 26788888888888 6776 654 67
Q ss_pred --ceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCC
Q 045580 597 --RALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNF 643 (764)
Q Consensus 597 --~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 643 (764)
+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888888888 67888888888888888888888888887776543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=7.5e-19 Score=171.52 Aligned_cols=128 Identities=24% Similarity=0.284 Sum_probs=70.2
Q ss_pred CEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCC
Q 045580 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442 (764)
Q Consensus 364 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 442 (764)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+ .+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555555 333332 3466666666666665544444 5566666666666665444444555556666666666
Q ss_pred cCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580 443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494 (764)
Q Consensus 443 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 494 (764)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 5554444445555555555555555554444445555555555555555543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1e-19 Score=178.88 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=123.3
Q ss_pred CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCc
Q 045580 435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGS 514 (764)
Q Consensus 435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~ 514 (764)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|+.|++++|++++..|..|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 45666666666 4454333 56777777777777666667777778888888888777655555543
Q ss_pred cccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcc
Q 045580 515 FVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLS 594 (764)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 594 (764)
+++|+.|+|++|++++..+..|..++
T Consensus 79 ------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 79 ------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp ------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCCC
Confidence 33678888888888865556678899
Q ss_pred ccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 595 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
+|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.++-.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 9999999999999888899999999999999999999888888999999999999999999877643
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.4e-18 Score=170.35 Aligned_cols=158 Identities=24% Similarity=0.259 Sum_probs=121.3
Q ss_pred CCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC
Q 045580 434 LTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG 513 (764)
Q Consensus 434 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 513 (764)
-+.++.++++++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 345666666665 4444332 66777777777777666777777777777777777775433333322
Q ss_pred ccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc
Q 045580 514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL 593 (764)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 593 (764)
+++|+.|+|++|++++..+..+..+
T Consensus 87 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 87 -------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------------------------------------CCCcCEEECCCCcCCccChhHhCcc
Confidence 3467888888888886666778889
Q ss_pred cccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580 594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661 (764)
Q Consensus 594 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 661 (764)
++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++..
T Consensus 112 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 99999999999998 78889999999999999999999877788999999999999999999988743
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=8.2e-19 Score=186.69 Aligned_cols=180 Identities=23% Similarity=0.241 Sum_probs=120.8
Q ss_pred cEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhh-cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580 411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWIN-EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY 489 (764)
Q Consensus 411 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 489 (764)
+.++++++.++ .+|..+ .+.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35555555555 234333 23466777777777655555555 677777777777777765566677777777777777
Q ss_pred CcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccc
Q 045580 490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDIL 569 (764)
Q Consensus 490 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 569 (764)
|++++..+..|.. +
T Consensus 98 N~l~~~~~~~~~~------------------------------------------------------------------l 111 (361)
T 2xot_A 98 NHLHTLDEFLFSD------------------------------------------------------------------L 111 (361)
T ss_dssp SCCCEECTTTTTT------------------------------------------------------------------C
T ss_pred CcCCcCCHHHhCC------------------------------------------------------------------C
Confidence 7776444433332 3
Q ss_pred ccccEEEcccCcccccCCccccCccccceecccccccccccCccc---cCCCCCCEEECcCCcCcccCcccccCCCC--C
Q 045580 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSL---SNLKMIESLDLSHNDLSGQIPPQLTELNF--L 644 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~LdLs~N~l~~~ip~~l~~l~~--L 644 (764)
++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+ ..+++|+.|||++|+|++..+..+..++. +
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 367777777777777777778888888888888888875433444 56788888888888888666667777776 3
Q ss_pred CeEeccCCccccCCC
Q 045580 645 SNFNVSYNHLSGPTP 659 (764)
Q Consensus 645 ~~L~ls~N~l~g~~p 659 (764)
+.|++++|++.|.|.
T Consensus 192 ~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 192 NGLYLHNNPLECDCK 206 (361)
T ss_dssp TTEECCSSCEECCHH
T ss_pred ceEEecCCCccCCcC
Confidence 778888888887664
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.8e-18 Score=173.17 Aligned_cols=170 Identities=23% Similarity=0.336 Sum_probs=102.1
Q ss_pred CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486 (764)
Q Consensus 407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 486 (764)
+++|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 33444444444444322 2 24455566666666666654333 5556666666666666653 22 256666666666
Q ss_pred CCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccc
Q 045580 487 LSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG 566 (764)
Q Consensus 487 Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (764)
+++|++++. + .+.
T Consensus 119 L~~n~i~~~-~-~l~----------------------------------------------------------------- 131 (291)
T 1h6t_A 119 LEHNGISDI-N-GLV----------------------------------------------------------------- 131 (291)
T ss_dssp CTTSCCCCC-G-GGG-----------------------------------------------------------------
T ss_pred CCCCcCCCC-h-hhc-----------------------------------------------------------------
Confidence 666666531 1 111
Q ss_pred cccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCe
Q 045580 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSN 646 (764)
Q Consensus 567 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 646 (764)
.+++|+.|++++|++++. ..++.+++|+.|++++|++++..| ++.+++|+.|++++|++++ +| .+..+++|+.
T Consensus 132 -~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~ 204 (291)
T 1h6t_A 132 -HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV 204 (291)
T ss_dssp -GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred -CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 133566777777777643 456777777777777777775544 7777777777777777774 34 3777777777
Q ss_pred EeccCCcccc
Q 045580 647 FNVSYNHLSG 656 (764)
Q Consensus 647 L~ls~N~l~g 656 (764)
|++++|+++.
T Consensus 205 L~l~~n~i~~ 214 (291)
T 1h6t_A 205 LELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEC
T ss_pred EECcCCcccC
Confidence 7777777765
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=164.43 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=123.5
Q ss_pred cEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580 411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY 489 (764)
Q Consensus 411 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 489 (764)
+.+++++|.++. +|..+ ...++.|++++|++++..+ ..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 466666666653 44433 2356788888888876544 4577888888888888888877777888888889999998
Q ss_pred CcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccc
Q 045580 490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDIL 569 (764)
Q Consensus 490 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 569 (764)
|++++..|..+.. +
T Consensus 91 N~l~~~~~~~~~~------------------------------------------------------------------l 104 (220)
T 2v70_A 91 NRLENVQHKMFKG------------------------------------------------------------------L 104 (220)
T ss_dssp SCCCCCCGGGGTT------------------------------------------------------------------C
T ss_pred CccCccCHhHhcC------------------------------------------------------------------C
Confidence 8888666655543 3
Q ss_pred ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCc
Q 045580 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP 635 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 635 (764)
++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 478889999999998888999999999999999999998889999999999999999999987654
No 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.9e-18 Score=164.73 Aligned_cols=114 Identities=24% Similarity=0.341 Sum_probs=92.3
Q ss_pred cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648 (764)
Q Consensus 569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 648 (764)
+++|+.|+|++|++++..|..|+++++|+.|+|++|+|++..|..++++++|+.|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 34788889999999888888999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 045580 649 VSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR 682 (764)
Q Consensus 649 ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~ 682 (764)
+++|+++|.++..+....+....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999988754322222233445555567644
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.6e-17 Score=169.28 Aligned_cols=189 Identities=22% Similarity=0.329 Sum_probs=100.5
Q ss_pred CcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccc
Q 045580 268 LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN 347 (764)
Q Consensus 268 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n 347 (764)
+..+.+..+.++... .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+++...+..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC
Confidence 334455555555332 3456677888888887776 4443 3556666666666666655444555555555555555
Q ss_pred cCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchh
Q 045580 348 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGA 427 (764)
Q Consensus 348 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 427 (764)
.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++ . ..
T Consensus 101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-----------------------~--~~ 151 (291)
T 1h6t_A 101 KVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-----------------------I--TV 151 (291)
T ss_dssp CCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-----------------------C--GG
T ss_pred cCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-----------------------c--hh
Confidence 55432 1244555555555555555432 234445555555555554443 2 23
Q ss_pred hcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580 428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494 (764)
Q Consensus 428 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 494 (764)
+..+++|+.|++++|++++..+ +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4455555555555555554333 5555555555555555553 22 25555555555555555543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.7e-17 Score=182.80 Aligned_cols=189 Identities=22% Similarity=0.271 Sum_probs=123.5
Q ss_pred CCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCC
Q 045580 292 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN 371 (764)
Q Consensus 292 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 371 (764)
+..+.+..+.+.+.++ ...+++|+.|++++|.+.....+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 4445555555553333 24566777777777777666566667777777777777775544 667777777777777
Q ss_pred ccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhh
Q 045580 372 MLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451 (764)
Q Consensus 372 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 451 (764)
.+.+ ++ .+..+++|+.|+|++|.+.+. +....+++|+.|++++|.+++. ..+..+++|+.|+|++|++++..|
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 7764 22 566777777777777777642 3333667777777777777654 456667777777777777765544
Q ss_pred hhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580 452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494 (764)
Q Consensus 452 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 494 (764)
+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66677777777777777642 346667777777777776654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.7e-17 Score=185.37 Aligned_cols=193 Identities=20% Similarity=0.256 Sum_probs=165.2
Q ss_pred CCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEccc
Q 045580 267 ELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN 346 (764)
Q Consensus 267 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~ 346 (764)
.+..+.+..+.+.... .+..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+...+..+++|+.|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcC
Confidence 4556677777776544 3678899999999999998 6664 578999999999999999887889999999999999
Q ss_pred ccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccch
Q 045580 347 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPG 426 (764)
Q Consensus 347 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 426 (764)
|.+++. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. +....+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence 999863 3689999999999999999863 4588999999999999999976 333389999999999999998766
Q ss_pred hhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCC
Q 045580 427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP 473 (764)
Q Consensus 427 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 473 (764)
+..+++|+.|+|++|++++. | .+..+++|+.|+|++|++.+...
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCC
T ss_pred -hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCcc
Confidence 88999999999999999964 4 58999999999999999985433
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.8e-17 Score=159.95 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=106.3
Q ss_pred cCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcc
Q 045580 429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508 (764)
Q Consensus 429 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~ 508 (764)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 44556777777777776 444 4666777777777777554 2335667777777777777776544444332
Q ss_pred cccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCc
Q 045580 509 GQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPS 588 (764)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~ 588 (764)
+++|+.|++++|++++..|.
T Consensus 111 ------------------------------------------------------------l~~L~~L~Ls~n~i~~~~~~ 130 (197)
T 4ezg_A 111 ------------------------------------------------------------LTSLTLLDISHSAHDDSILT 130 (197)
T ss_dssp ------------------------------------------------------------CTTCCEEECCSSBCBGGGHH
T ss_pred ------------------------------------------------------------CCCCCEEEecCCccCcHhHH
Confidence 33677777777777777777
Q ss_pred cccCccccceecccccc-cccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580 589 EIGSLSEIRALNLSHNF-LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 589 ~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 656 (764)
.++.+++|+.|++++|+ ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 78888888888888887 54 455 57888888888888888875 34 67788888888888888754
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1e-16 Score=157.50 Aligned_cols=152 Identities=22% Similarity=0.250 Sum_probs=124.6
Q ss_pred ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580 340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN 418 (764)
Q Consensus 340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n 418 (764)
+.++++++.++. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..|..+ .+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666776663 444332 578888888888886666678888888888888888887777777 7888888888888
Q ss_pred ccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494 (764)
Q Consensus 419 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 494 (764)
.++...+..|..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8886666678889999999999999998888889999999999999999997777788899999999999999874
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.8e-17 Score=167.57 Aligned_cols=171 Identities=19% Similarity=0.230 Sum_probs=136.0
Q ss_pred cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEE
Q 045580 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL 485 (764)
Q Consensus 406 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 485 (764)
.+.++..++++++.+++.. .+..+++|+.|++++|+++ .++ .+..+++|++|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556677778888777443 4677888889999988887 445 67888899999999998885444 8888999999
Q ss_pred eCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580 486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565 (764)
Q Consensus 486 ~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 565 (764)
++++|++++ +|...
T Consensus 91 ~L~~N~l~~-l~~~~----------------------------------------------------------------- 104 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIP----------------------------------------------------------------- 104 (263)
T ss_dssp ECCSSCCSC-CTTCC-----------------------------------------------------------------
T ss_pred ECCCCccCC-cCccc-----------------------------------------------------------------
Confidence 999998874 22100
Q ss_pred ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCC
Q 045580 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645 (764)
Q Consensus 566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 645 (764)
.++|+.|++++|++++ ++ .++.+++|+.|++++|++++. | .++.+++|+.|++++|++++. ..+..+++|+
T Consensus 105 ---~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 105 ---SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp ---CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred ---cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 0368889999999985 33 588999999999999999864 4 688999999999999999976 6788899999
Q ss_pred eEeccCCccccC
Q 045580 646 NFNVSYNHLSGP 657 (764)
Q Consensus 646 ~L~ls~N~l~g~ 657 (764)
.|++++|++++.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 999999999875
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=6.1e-20 Score=205.82 Aligned_cols=86 Identities=27% Similarity=0.330 Sum_probs=47.8
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccC-cccccCCCCCCeEec
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI-PPQLTELNFLSNFNV 649 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~l 649 (764)
+|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+|++|++++.+ |..+..+++|+.|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 4555555555555 455555555555555555555553 44 5555555555555555555544 555555555555555
Q ss_pred cCCccccCCC
Q 045580 650 SYNHLSGPTP 659 (764)
Q Consensus 650 s~N~l~g~~p 659 (764)
++|++++.+|
T Consensus 541 ~~N~l~~~~~ 550 (567)
T 1dce_A 541 QGNSLCQEEG 550 (567)
T ss_dssp TTSGGGGSSS
T ss_pred cCCcCCCCcc
Confidence 5555555444
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=4.1e-17 Score=173.55 Aligned_cols=128 Identities=26% Similarity=0.247 Sum_probs=95.7
Q ss_pred CEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc--cCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD 441 (764)
Q Consensus 364 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 441 (764)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+ .+++|+.|++++|++++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888877 4565443 357888888888887666655 677788888888888776667777778888888888
Q ss_pred CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494 (764)
Q Consensus 442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 494 (764)
|++++..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 88776666667777788888888888776667777777777777777777764
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.5e-16 Score=155.73 Aligned_cols=156 Identities=23% Similarity=0.196 Sum_probs=133.0
Q ss_pred CCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEecc
Q 045580 338 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMH 416 (764)
Q Consensus 338 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~ 416 (764)
..+.++.+++.++ .+|..+ .++|++|++++|.+++..|..|..+++|++|++++|++++..+..+ .+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3556777777776 444433 3789999999999998888888899999999999999987666666 78999999999
Q ss_pred CCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCc
Q 045580 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI 496 (764)
Q Consensus 417 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 496 (764)
+|++++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99998777777899999999999999999 77888999999999999999999776778899999999999999998655
Q ss_pred C
Q 045580 497 P 497 (764)
Q Consensus 497 p 497 (764)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 4
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.5e-17 Score=157.11 Aligned_cols=177 Identities=20% Similarity=0.233 Sum_probs=118.5
Q ss_pred CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC
Q 045580 435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG 513 (764)
Q Consensus 435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 513 (764)
+.+++++|+++ .+|..+. .+|++|++++|++++..+. .+..+++|++|++++|++++..|..+.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56677777765 4554443 2677777777777755543 3677788888888888887766655543
Q ss_pred ccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc
Q 045580 514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL 593 (764)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 593 (764)
+++|+.|+|++|++++..|..|+++
T Consensus 77 -------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 77 -------------------------------------------------------ASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp -------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTTC
T ss_pred -------------------------------------------------------cccCCEEECCCCcCCccCHHHhcCC
Confidence 3367888888888887777788889
Q ss_pred cccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccC
Q 045580 594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYG 673 (764)
Q Consensus 594 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~ 673 (764)
++|+.|+|++|++++.+|..++.+++|+.|+|++|++++..+-.. -...++...+..+...|.-|.. +....-..+.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~ 178 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLP 178 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSC
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChH--HcCCChhhCc
Confidence 999999999999998888899999999999999999987655210 0112233345556666655643 2222223344
Q ss_pred CCCCCCCCCC
Q 045580 674 GNSGLCGPRI 683 (764)
Q Consensus 674 gn~~lc~~~~ 683 (764)
.+...|..+.
T Consensus 179 ~~~~~C~~~~ 188 (192)
T 1w8a_A 179 HSEFKCSSEN 188 (192)
T ss_dssp TTTCCCCCC-
T ss_pred HhhcCcCCCC
Confidence 4555565443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.2e-18 Score=195.30 Aligned_cols=195 Identities=22% Similarity=0.208 Sum_probs=152.6
Q ss_pred cCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCc-------------cccccchhhcCCCCCCEEE-ccCCcCCC
Q 045580 382 GNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNA-------------FNGSIPGALRRSSSLTVLD-LRDNQFSG 446 (764)
Q Consensus 382 ~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~-------------l~~~~~~~~~~~~~L~~L~-L~~n~l~~ 446 (764)
..+++|+.|+|++|+++ .+|..+ .+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56788999999999987 566666 78899999987764 5566777788888888888 56654431
Q ss_pred cchh------hhhc--CCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccc
Q 045580 447 SIPI------WINE--FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLW 518 (764)
Q Consensus 447 ~~p~------~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 518 (764)
++. .+.. ...|+.|++++|++++ +|. +..+++|+.|++++|.++ .+|..+++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------- 484 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------- 484 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------
Confidence 111 1111 1358899999999985 666 888999999999999998 67766654
Q ss_pred cccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccce
Q 045580 519 ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRA 598 (764)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 598 (764)
+++|+.|+|++|++++ +| .++.+++|+.
T Consensus 485 --------------------------------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~ 512 (567)
T 1dce_A 485 --------------------------------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQE 512 (567)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred --------------------------------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence 3478999999999996 67 8999999999
Q ss_pred eccccccccccc-CccccCCCCCCEEECcCCcCcccCccc---ccCCCCCCeEec
Q 045580 599 LNLSHNFLSGSI-PQSLSNLKMIESLDLSHNDLSGQIPPQ---LTELNFLSNFNV 649 (764)
Q Consensus 599 L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~L~l 649 (764)
|+|++|+|++.+ |..++.+++|+.|+|++|++++.+|.. +..+++|+.||+
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999877 999999999999999999999765532 334788888874
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.9e-17 Score=191.64 Aligned_cols=133 Identities=22% Similarity=0.273 Sum_probs=104.0
Q ss_pred eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCC
Q 045580 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG 446 (764)
Q Consensus 367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 446 (764)
+++.|.+. ..+..+..++.|+.|+|++|.+....+..+.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 34445444 5577888899999999999998844444558899999999999998 78888999999999999999999
Q ss_pred cchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcc
Q 045580 447 SIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANV 503 (764)
Q Consensus 447 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 503 (764)
.+|..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 77999999999999999999998 778889999999999999999999888777553
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.7e-17 Score=191.88 Aligned_cols=191 Identities=21% Similarity=0.175 Sum_probs=122.1
Q ss_pred CcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCc
Q 045580 392 ISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKG 470 (764)
Q Consensus 392 L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 470 (764)
++.|.+. ..+..+ .+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..++.+++|++|+|++|+|+
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3344444 445555 7889999999999998 66666778999999999999999 88888999999999999999999
Q ss_pred cCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCc
Q 045580 471 NIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQ 550 (764)
Q Consensus 471 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 550 (764)
.+|..+..+++|++|+|++|.++ .+|..+++
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~------------------------------------------------ 314 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN------------------------------------------------ 314 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS------------------------------------------------
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhc------------------------------------------------
Confidence 78999999999999999999986 66765544
Q ss_pred cceEEeeccccccccccccccccEEEcccCcccccCCccccCccc-cceecccccccccccCccccCCCCCCEEECcCC-
Q 045580 551 RGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSE-IRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN- 628 (764)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N- 628 (764)
+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|.. |+.|++++|
T Consensus 315 ------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~ 370 (727)
T 4b8c_D 315 ------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDG 370 (727)
T ss_dssp ------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------
T ss_pred ------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccc
Confidence 347899999999999999988876543 235889999999988864 556777777
Q ss_pred -------cCcccCcccccCCCCCCeEeccCCccccCCC
Q 045580 629 -------DLSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659 (764)
Q Consensus 629 -------~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 659 (764)
.+.+.++..+..+..+....+++|-+.+...
T Consensus 371 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 371 EPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp -------------------------------CCCGGGC
T ss_pred ccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 4555555666677777888899998875444
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=2e-16 Score=159.89 Aligned_cols=169 Identities=22% Similarity=0.291 Sum_probs=126.5
Q ss_pred CCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcC
Q 045580 315 FSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394 (764)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 394 (764)
.++..++++++.+++...+..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 34445555666666555555667777777777777643 3 57778888888888888875444 77888888888888
Q ss_pred CCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCc
Q 045580 395 NQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN 474 (764)
Q Consensus 395 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 474 (764)
|++++..+ ... ++|+.|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|++|++++|++++. .
T Consensus 95 N~l~~l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 95 NRLKNLNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp SCCSCCTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred CccCCcCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 88876432 223 7888888888888764 3 578888999999999998854 4 688889999999999999865 6
Q ss_pred cccCCCCCCEEeCCCCcCcCC
Q 045580 475 QLCHLSLLNILDLSYNKFNGP 495 (764)
Q Consensus 475 ~~~~l~~L~~L~Ls~n~l~~~ 495 (764)
.+..+++|+.|++++|++++.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 688889999999999988765
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3e-16 Score=151.42 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=87.1
Q ss_pred cCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580 287 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366 (764)
Q Consensus 287 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 366 (764)
..+++|++|++++|.+. .+| . +..+++|++|++++|.+.....+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45566666666666665 555 2 35566666666666655544455566666666666666666566666777777777
Q ss_pred eCcCCccCCCccccccCCCCCCEEECcCCC-CCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcC
Q 045580 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQ-LSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444 (764)
Q Consensus 367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 444 (764)
++++|.+++..+..+..+++|++|++++|. ++ .++....+++|+.|++++|.+++. + .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 777777766566666667777777777666 33 223211444444444444444431 1 334444444444444443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=151.75 Aligned_cols=93 Identities=24% Similarity=0.255 Sum_probs=83.5
Q ss_pred cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648 (764)
Q Consensus 569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 648 (764)
+++|+.|+|++|++++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 34788899999999887788899999999999999999988888999999999999999999977777899999999999
Q ss_pred ccCCccccCCCCC
Q 045580 649 VSYNHLSGPTPNA 661 (764)
Q Consensus 649 ls~N~l~g~~p~~ 661 (764)
+++|++.|.++..
T Consensus 133 L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 133 IGANPLYCDCNMQ 145 (193)
T ss_dssp CCSSCEECSGGGH
T ss_pred eCCCCeecCCcCH
Confidence 9999999987643
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.4e-16 Score=167.13 Aligned_cols=282 Identities=13% Similarity=0.068 Sum_probs=169.2
Q ss_pred CCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhc-------
Q 045580 192 QLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKI------- 264 (764)
Q Consensus 192 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~------- 264 (764)
+.+++.|.++++ +...-...+...+++|++|+|++|.+.........++.++.+.+..+ .+|...+..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 346777777764 22111223332377788888888887621111222233444555544 455566666
Q ss_pred -CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccc----c--ceeecCCCC
Q 045580 265 -LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL----Q--GEVVFPNST 337 (764)
Q Consensus 265 -l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l----~--~~~~~~~~~ 337 (764)
+++|+.|++.+ .++...+.+|..|++|+.+++++|.+. .++...|.++.++..+....+.. . +...+..+.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 78888888888 777666778888888888888888877 67776677766666665544221 1 011333444
Q ss_pred CCc-eEEcccccCCCcccccc----cCCCCCCEEeCcCCccCCCccccc-cCCCCCCEEECcCCCCCCCCCCcc-cCCCc
Q 045580 338 NLC-WLYLNNNHFSGKIQDGL----SKATSLLELDLSNNMLYGQIPHWF-GNLSGLQFLDISENQLSGSVPSSF-NLSSL 410 (764)
Q Consensus 338 ~L~-~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L 410 (764)
.|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+ ..+++|+.+++++|+++......| ++.+|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 444 33332211 111111 12334445554443111 111111 236777777777777776666666 67777
Q ss_pred cEEeccCCccccccchhhcCCCCCC-EEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580 411 RRLYMHMNAFNGSIPGALRRSSSLT-VLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486 (764)
Q Consensus 411 ~~L~l~~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 486 (764)
+.+++.+| +....+.+|.+|++|+ .+++.+ .++..-+.+|.+|++|+.+++++|+++...+..|.++++|+.+.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77777776 6655667778888887 888877 66655567778888888888888888766666788888887775
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.6e-15 Score=142.25 Aligned_cols=65 Identities=28% Similarity=0.280 Sum_probs=37.8
Q ss_pred CCCCCEEEccCCcCC-CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580 431 SSSLTVLDLRDNQFS-GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497 (764)
Q Consensus 431 ~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 497 (764)
.++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH
Confidence 355666666666665 45555556666666666666666543 445555566666666665554444
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.6e-15 Score=141.09 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=78.5
Q ss_pred ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV 649 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 649 (764)
++|+.|++++|++++..+..++.+++|+.|++++|++++..+..++.+++|+.|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 46788888888888666667888999999999999999777777899999999999999999776666788999999999
Q ss_pred cCCccccCCCCC
Q 045580 650 SYNHLSGPTPNA 661 (764)
Q Consensus 650 s~N~l~g~~p~~ 661 (764)
++|++.|.+|..
T Consensus 132 ~~N~~~~~~~~l 143 (177)
T 2o6r_A 132 HTNPWDCSCPRI 143 (177)
T ss_dssp CSSCBCCCHHHH
T ss_pred cCCCeeccCccH
Confidence 999999988743
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.4e-15 Score=157.77 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=131.0
Q ss_pred CCCCcEEECcCCccc--------------------ccCchhhcC--------CCCCCEEECCCCCCCCcchhhhhCCCCC
Q 045580 71 LKKLVELDLSKNNLY--------------------GHLSPCLSN--------LTHIKVLDLSSNQLTGNLQSVIANIKSL 122 (764)
Q Consensus 71 l~~L~~L~Ls~n~l~--------------------~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 122 (764)
+++|++|||++|.+. .+.+.+|.+ +++|+.|+|++ .++...+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 789999999999988 233456667 88888888887 7776667778888888
Q ss_pred CEEECcCCCCCCCCChhhhccCCCCcEEEccCCCC-----CCccccCCCCCCCCcc-EEEcCCCCCCCccHhhh----CC
Q 045580 123 EYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLV-----KIETEEFPGLPEYQLK-ALNLRNCSLHALPSFLL----HQ 192 (764)
Q Consensus 123 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~-~L~L~~n~l~~lp~~l~----~~ 192 (764)
++|++++|.+. .++...|..+.++..+....... .+...+|. .+..|+ .+.+.. .+.++..+. ..
T Consensus 127 ~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~--~~~~L~~~i~~~~--~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 127 KICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI--EGEPLETTIQVGA--MGKLEDEIMKAGLQP 201 (329)
T ss_dssp CEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE--ESCCCEEEEEECT--TCCHHHHHHHTTCCG
T ss_pred ceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc--cccccceeEEecC--CCcHHHHHhhcccCc
Confidence 88888888776 56666777777777666654211 12222221 222344 344432 234444332 23
Q ss_pred CCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCC-CCCCCCccEEEccCCCCCCCCChhHhhcCCCCc-E
Q 045580 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQL-PSSKHDLLRIDISHNKFSGQLPGNMGKILPELL-S 270 (764)
Q Consensus 193 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~-~ 270 (764)
.+++.+.+.++-.. .....+...+++|+.+++++|.++..... ...+.+|+.+++.+| +. .++...+..+++|+ .
T Consensus 202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEE
T ss_pred cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEE
Confidence 45677777665322 22233333477777777777766532211 123344444444443 32 34444444444554 5
Q ss_pred EEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEE
Q 045580 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL 320 (764)
Q Consensus 271 L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 320 (764)
+++.+ .++...+.+|.+|++|+.+++++|.+. .++...|.++++|+.+
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhh
Confidence 55544 344334444555555555555444444 4444444444444444
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.6e-15 Score=137.63 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=44.4
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccc-cCccccCCCCCCEEECcCCcCcccCc---ccccCCCCCCe
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGS-IPQSLSNLKMIESLDLSHNDLSGQIP---PQLTELNFLSN 646 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~ 646 (764)
+|+.|++++|++++.+|..++.+++|+.|++++|++++. .|..++.+++|+.|++++|++++..+ ..+..+++|++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 455555555555544555555555555566666655542 23555666666666666666665444 35556666666
Q ss_pred Eecc
Q 045580 647 FNVS 650 (764)
Q Consensus 647 L~ls 650 (764)
||++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 6654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=136.97 Aligned_cols=129 Identities=26% Similarity=0.340 Sum_probs=96.8
Q ss_pred CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCc
Q 045580 435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGS 514 (764)
Q Consensus 435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~ 514 (764)
+.+++++|+++ .+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..|.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 45666666666 4454332 46777777777776 56677777777888888888777655544443
Q ss_pred cccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcc
Q 045580 515 FVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLS 594 (764)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 594 (764)
+++|+.|+|++|++++..|..|..++
T Consensus 77 ------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 77 ------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDGLK 102 (193)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred ------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCCCC
Confidence 33678888888888877777888999
Q ss_pred ccceecccccccccccCccccCCCCCCEEECcCCcCccc
Q 045580 595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ 633 (764)
Q Consensus 595 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 633 (764)
+|+.|+|++|+|++..+..+..+++|+.|+|++|.+.+.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 999999999999966666788999999999999998753
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=2.5e-14 Score=134.02 Aligned_cols=131 Identities=21% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCCEEeCcCCccC-CCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEcc
Q 045580 362 SLLELDLSNNMLY-GQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440 (764)
Q Consensus 362 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 440 (764)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. .....+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 3444444444443 33344444444444444444444433 111144444444444444444444444445555555555
Q ss_pred CCcCCCcc-hhhhhcCCCccEEEccCCcCCccCC---ccccCCCCCCEEeCCCCcCc
Q 045580 441 DNQFSGSI-PIWINEFSYLGILLLRGNQLKGNIP---NQLCHLSLLNILDLSYNKFN 493 (764)
Q Consensus 441 ~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~ 493 (764)
+|++++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555321 1445555555555555555553333 24555556666666555544
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.7e-14 Score=132.21 Aligned_cols=127 Identities=21% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCCCEEeCcCCccC-CCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580 361 TSLLELDLSNNMLY-GQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL 439 (764)
Q Consensus 361 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 439 (764)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. +....+++|+.|++++|.+++.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 44555555555555 44555555566666666666665544 22225566666666666666556666666777777777
Q ss_pred cCCcCCCc-chhhhhcCCCccEEEccCCcCCccCC---ccccCCCCCCEEeCC
Q 045580 440 RDNQFSGS-IPIWINEFSYLGILLLRGNQLKGNIP---NQLCHLSLLNILDLS 488 (764)
Q Consensus 440 ~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls 488 (764)
++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777653 23666777777777777777775444 356667777777765
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.5e-13 Score=147.86 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=76.6
Q ss_pred ccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCcccc
Q 045580 84 LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEE 163 (764)
Q Consensus 84 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 163 (764)
++.+-..+|.++++|+.++|..+ ++.....+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+...+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeeccee
Confidence 44445567777777777777643 55555667777777777777654 33 45556677777777766665544444444
Q ss_pred CCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCC
Q 045580 164 FPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228 (764)
Q Consensus 164 ~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 228 (764)
|.... +........ ...+ ...+..+.+|+.+.+..+. . .++...|.++++|+.+.+..+
T Consensus 136 F~~~~---~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 136 FKGCD---FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTCC---CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT
T ss_pred eeccc---ccccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC
Confidence 44332 222222211 1122 2345566667777665442 2 455555556666666655443
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=5.4e-13 Score=142.81 Aligned_cols=263 Identities=13% Similarity=0.190 Sum_probs=147.0
Q ss_pred CCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccE
Q 045580 95 LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKA 174 (764)
Q Consensus 95 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 174 (764)
+..++.+.+.++ ++.....+|.++ +|+.+++..+ ++ .++...|.++ +|+.+.+.++...+...+|... .+|+.
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c--~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYC--YNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCTTCCEECSSTTTTC--TTCCE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCCCccEehHHHhhCc--ccCCe
Confidence 456666666553 554555666664 5777777655 43 4555556553 5666666654444554444433 34677
Q ss_pred EEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCC
Q 045580 175 LNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFS 254 (764)
Q Consensus 175 L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~ 254 (764)
+++.+|++..++...+.+.+|+.+.+..+ ++ .++...|.++++|+.+.+..+ ++
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~----------------------- 238 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VS----------------------- 238 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CC-----------------------
T ss_pred eecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-cc-----------------------
Confidence 77766666666655555667777777643 44 566666666666776666553 22
Q ss_pred CCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccc----ccCchhhhhCCCCCCEEEeecccccce
Q 045580 255 GQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS----GELPRQFLSGCFSLSFLSLSDNHLQGE 330 (764)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~~l~~L~~L~l~~n~l~~~ 330 (764)
.++...+.. .+|+.+.+. +.++.....+|.+|++|+.+++.++.+. ..++...|.+|++|+.+++.+ .+...
T Consensus 239 -~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 239 -TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp -EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred -Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence 233333332 345555552 2333334445555555555555554332 124444555566666666653 23322
Q ss_pred e--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC-CCCEEECcCCC
Q 045580 331 V--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS-GLQFLDISENQ 396 (764)
Q Consensus 331 ~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~ 396 (764)
. .|.++++|+.+.+..+ ++.....+|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 2 5556666666666443 444555667777 777777777766655555666663 56667665543
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=6.1e-13 Score=142.39 Aligned_cols=164 Identities=12% Similarity=0.114 Sum_probs=84.9
Q ss_pred CChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCC
Q 045580 257 LPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS 336 (764)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 336 (764)
++...+..+++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+. .++...|.+|++|+.+++.++.+..
T Consensus 217 I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~------- 285 (401)
T 4fdw_A 217 IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFND------- 285 (401)
T ss_dssp ECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCC-------
T ss_pred ehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccC-------
Confidence 33333344555555555443 33333334444 445555552 2233 3444444445555555444443320
Q ss_pred CCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEec
Q 045580 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYM 415 (764)
Q Consensus 337 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l 415 (764)
+........+|.++++|+.+++.+ .++......|.++++|+.+.|..+ ++......| ++ +|+.+++
T Consensus 286 ----------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 286 ----------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp ----------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred ----------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence 001123445566666677766663 344444556666677777777443 554445555 55 6777777
Q ss_pred cCCccccccchhhcCCC-CCCEEEccCCcC
Q 045580 416 HMNAFNGSIPGALRRSS-SLTVLDLRDNQF 444 (764)
Q Consensus 416 ~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l 444 (764)
.+|......+..|.+++ .++.|.+..+.+
T Consensus 353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 353 EGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 77766655555666663 667777766543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=3.2e-16 Score=151.36 Aligned_cols=155 Identities=22% Similarity=0.257 Sum_probs=107.9
Q ss_pred hcCCCCCCEEEccCCcCCCcchh------hhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhh
Q 045580 428 LRRSSSLTVLDLRDNQFSGSIPI------WINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFA 501 (764)
Q Consensus 428 ~~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 501 (764)
+.....++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 33445556666666666655554 77778888888888888775 55 6777788888888888776 3443322
Q ss_pred cchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCc
Q 045580 502 NVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNE 581 (764)
Q Consensus 502 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 581 (764)
. +++|+.|++++|+
T Consensus 91 ~------------------------------------------------------------------~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 91 V------------------------------------------------------------------ADTLEELWISYNQ 104 (198)
T ss_dssp H------------------------------------------------------------------HHHCSEEEEEEEE
T ss_pred c------------------------------------------------------------------CCcCCEEECcCCc
Confidence 2 2367788888888
Q ss_pred ccccCCccccCccccceecccccccccccC-ccccCCCCCCEEECcCCcCcccCccc----------ccCCCCCCeEecc
Q 045580 582 LTGDIPSEIGSLSEIRALNLSHNFLSGSIP-QSLSNLKMIESLDLSHNDLSGQIPPQ----------LTELNFLSNFNVS 650 (764)
Q Consensus 582 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls 650 (764)
+++ +| .++.+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|+.||
T Consensus 105 l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld-- 180 (198)
T 1ds9_A 105 IAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD-- 180 (198)
T ss_dssp CCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--
T ss_pred CCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--
Confidence 875 44 57778888888888888874332 46778888888888888887766653 67778888776
Q ss_pred CCccc
Q 045580 651 YNHLS 655 (764)
Q Consensus 651 ~N~l~ 655 (764)
+|+++
T Consensus 181 ~~~i~ 185 (198)
T 1ds9_A 181 GMPVD 185 (198)
T ss_dssp CGGGT
T ss_pred CcccC
Confidence 55554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2.1e-13 Score=128.92 Aligned_cols=132 Identities=23% Similarity=0.263 Sum_probs=97.1
Q ss_pred CCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD 441 (764)
Q Consensus 363 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 441 (764)
.+.++++++.++ .+|..+ .++|++|++++|++++..+..+ .+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345666666655 333322 2466777777777665555554 567777777777777766666678888899999999
Q ss_pred CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497 (764)
Q Consensus 442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 497 (764)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 98887767777888999999999999986666667889999999999999987665
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=1.3e-12 Score=140.62 Aligned_cols=291 Identities=14% Similarity=0.170 Sum_probs=165.3
Q ss_pred eeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhh
Q 045580 62 VFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSL 141 (764)
Q Consensus 62 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l 141 (764)
..-..+|.++++|+.+.|.. .++.+...+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+ +. .+....|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceee
Confidence 33456788999999999975 477677789999999999999866 66566778999999999888755 32 4455567
Q ss_pred ccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCC
Q 045580 142 KNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL 220 (764)
Q Consensus 142 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 220 (764)
.++..++.. .......+...+|.. +.+|+.+.+.++ +..++ ..+..+.+|+.+++..+ ++ .++...+.++..|
T Consensus 137 ~~~~~~~~~-~~~~~~~i~~~aF~~--c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L 210 (394)
T 4fs7_A 137 KGCDFKEIT-IPEGVTVIGDEAFAT--CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILL 210 (394)
T ss_dssp TTCCCSEEE-CCTTCCEECTTTTTT--CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTC
T ss_pred ecccccccc-cCccccccchhhhcc--cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce-EeCchhhcccccc
Confidence 776544443 333333444444443 456999999765 44454 45677899999999876 44 6777777788888
Q ss_pred CEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCC
Q 045580 221 DTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300 (764)
Q Consensus 221 ~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 300 (764)
+.+.+..+...-. ..... ...|+.+.+... ++......+..+..|+.+.+..+
T Consensus 211 ~~i~~~~~~~~i~-~~~~~-------------------------~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 211 ENMEFPNSLYYLG-DFALS-------------------------KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CBCCCCTTCCEEC-TTTTT-------------------------TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred ceeecCCCceEee-hhhcc-------------------------cCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 8777665433210 01112 234444444322 12222334455555555555444
Q ss_pred cccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccc
Q 045580 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW 380 (764)
Q Consensus 301 ~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 380 (764)
.. .++...+..+..++.+......+. ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+
T Consensus 264 ~~--~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 264 KL--RIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp TC--EECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred cc--eeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 22 233333344455554444332211 113334444444444332 23233344555555555555432 33222344
Q ss_pred ccCCCCCCEEECcC
Q 045580 381 FGNLSGLQFLDISE 394 (764)
Q Consensus 381 ~~~l~~L~~L~L~~ 394 (764)
|.++.+|+.+.+..
T Consensus 339 F~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 339 FRGCTSLSNINFPL 352 (394)
T ss_dssp TTTCTTCCEECCCT
T ss_pred ccCCCCCCEEEECc
Confidence 55555555555443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.1e-13 Score=129.66 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=85.4
Q ss_pred ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV 649 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 649 (764)
+.++.|+|++|++++..|..|+.+++|+.|+|++|+|++..|..+.++++|+.|+|++|+|++..|..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 36889999999999888999999999999999999999777778899999999999999999887778999999999999
Q ss_pred cCCccccCCCCC
Q 045580 650 SYNHLSGPTPNA 661 (764)
Q Consensus 650 s~N~l~g~~p~~ 661 (764)
++|+++|.++..
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999999988754
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=8.4e-14 Score=131.45 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=49.3
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCc--cccCCCCCCEEECcCCcCcccCccc----ccCCCCC
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQ--SLSNLKMIESLDLSHNDLSGQIPPQ----LTELNFL 644 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L 644 (764)
+|+.|++++|++++..|..++.+++|+.|++++|+++ .+|. .++.+++|+.|++++|+++ .+|.. +..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 4555555555555333333356666666666666664 3444 5666666677777777666 34443 6666777
Q ss_pred CeEeccCCcccc
Q 045580 645 SNFNVSYNHLSG 656 (764)
Q Consensus 645 ~~L~ls~N~l~g 656 (764)
+.||+++|....
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 777777666543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.7e-15 Score=144.75 Aligned_cols=151 Identities=23% Similarity=0.244 Sum_probs=112.5
Q ss_pred CccEEeccCCccccccc------hhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580 409 SLRRLYMHMNAFNGSIP------GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482 (764)
Q Consensus 409 ~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 482 (764)
.++.++++.+.+.+..| ..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 34444444444444443 377888888888888888885 56 7888888888999888888 567777777889
Q ss_pred CEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc
Q 045580 483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE 562 (764)
Q Consensus 483 ~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 562 (764)
++|++++|++++ +| .+..
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~------------------------------------------------------------ 113 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEK------------------------------------------------------------ 113 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHH------------------------------------------------------------
T ss_pred CEEECcCCcCCc-CC-cccc------------------------------------------------------------
Confidence 999999998875 33 2222
Q ss_pred cccccccccccEEEcccCcccccCC-ccccCccccceecccccccccccCcc----------ccCCCCCCEEECcCCcCc
Q 045580 563 SYKGDILNYMTGLDFSCNELTGDIP-SEIGSLSEIRALNLSHNFLSGSIPQS----------LSNLKMIESLDLSHNDLS 631 (764)
Q Consensus 563 ~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~LdLs~N~l~ 631 (764)
+++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|+.|| +|.++
T Consensus 114 ------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 114 ------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3478889999999985332 47888999999999999998776653 88899999997 77776
Q ss_pred c
Q 045580 632 G 632 (764)
Q Consensus 632 ~ 632 (764)
.
T Consensus 186 ~ 186 (198)
T 1ds9_A 186 V 186 (198)
T ss_dssp T
T ss_pred H
Confidence 3
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=3.6e-13 Score=126.52 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=83.9
Q ss_pred ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580 570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV 649 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 649 (764)
+.|+.|+|++|++++..|..|+++++|+.|+|++|+|++..+..++++++|+.|||++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 37899999999999888999999999999999999999766667899999999999999999777777999999999999
Q ss_pred cCCccccCCCCC
Q 045580 650 SYNHLSGPTPNA 661 (764)
Q Consensus 650 s~N~l~g~~p~~ 661 (764)
++|++.+.++..
T Consensus 113 ~~N~~~c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWDCECRDI 124 (174)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCcccccccH
Confidence 999999987744
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=5.7e-13 Score=125.68 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=87.5
Q ss_pred ccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCE
Q 045580 357 LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTV 436 (764)
Q Consensus 357 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 436 (764)
+.++.+|+.|++++|.++. ++......++|++|++++|.+++. +....+++|+.|++++|.+++..+..+..+++|+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3445566666666666652 333222223666666666666654 22225667777777777776554455577788888
Q ss_pred EEccCCcCCCcchh--hhhcCCCccEEEccCCcCCccCCcc----ccCCCCCCEEeCCCCcCc
Q 045580 437 LDLRDNQFSGSIPI--WINEFSYLGILLLRGNQLKGNIPNQ----LCHLSLLNILDLSYNKFN 493 (764)
Q Consensus 437 L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~ 493 (764)
|++++|+++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.||+++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888886 4554 6778888888888888887 45553 778888999998888754
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=3.3e-12 Score=119.53 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=96.1
Q ss_pred cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS 650 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 650 (764)
..+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..++++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999998 5887764 889999999999998889999999999999999999998888888999999999999
Q ss_pred CCccccCCCC-CCCCCCCCccccCCCCCCCCC
Q 045580 651 YNHLSGPTPN-AGQFANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 651 ~N~l~g~~p~-~~~~~~~~~~~~~gn~~lc~~ 681 (764)
+|+|++..|. ...+..++...+.+|+..|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999987765 356778888899999998864
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=4.8e-12 Score=118.76 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=94.7
Q ss_pred ccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccC
Q 045580 572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSY 651 (764)
Q Consensus 572 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 651 (764)
-+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..++++++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367999999997 7888775 8999999999999998899999999999999999999987777789999999999999
Q ss_pred CccccCCCC-CCCCCCCCccccCCCCCCCCC
Q 045580 652 NHLSGPTPN-AGQFANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 652 N~l~g~~p~-~~~~~~~~~~~~~gn~~lc~~ 681 (764)
|+|++..|. ...+..++...+.+|+..|.+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999986665 456778888889999988864
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=2.2e-10 Score=123.07 Aligned_cols=326 Identities=13% Similarity=0.144 Sum_probs=165.3
Q ss_pred cccccCCC-CCcEEECcCCcccccCchhhcCCCCCCEEECCCCC---CCCcchhhhhCCCCCCEEECcCCCCCCCCChhh
Q 045580 65 NTGICELK-KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ---LTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNS 140 (764)
Q Consensus 65 ~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 140 (764)
..+|.+.+ .|+.+.+-.+ ++.+-..+|.++++|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++ .++...
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence 34455553 4777777643 565666777788888888776653 45445567777777777776554 22 455556
Q ss_pred hccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCC
Q 045580 141 LKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL 220 (764)
Q Consensus 141 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 220 (764)
|..+.+|+.+.+..+...+....|... ..|+.+.+..+ +..+....+...+|+.+.+..+-. .+....+..+.++
T Consensus 133 F~~c~~L~~i~lp~~~~~I~~~~F~~c--~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGVTSVADGMFSYC--YSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--RIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--EECTTTTTTCTTC
T ss_pred hhhhcccccccccceeeeecccceecc--cccccccccce-eeEeccccccccceeEEEECCccc--ccccchhhhcccc
Confidence 777777777777665555555444433 34777776543 455554444455677777665432 3333445566666
Q ss_pred CEEEccCCcCccCCCCCC-CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCC
Q 045580 221 DTLYLLNNSLSGNFQLPS-SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSS 299 (764)
Q Consensus 221 ~~L~L~~n~l~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 299 (764)
+......+.......... ........... .+ ....+..+.+.. .++.....+|..+..|+.+.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIR-------YP-----SQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEE-------CC-----TTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT
T ss_pred ceecccccccccccceeecccccccccccc-------cc-----cccccceEEcCC-cceEcccceeeecccccEEeccc
Confidence 666555443321100000 00000000000 00 011222222221 12222334555666666666654
Q ss_pred CcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc
Q 045580 300 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI 377 (764)
Q Consensus 300 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 377 (764)
+.. .+....+.+++.|+.+.+.. .+.... .|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++...
T Consensus 275 ~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 275 SVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp TCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred ccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence 322 34444455666666666642 222222 5566666666666543 44344556666777777776543 44344
Q ss_pred cccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCC
Q 045580 378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMN 418 (764)
Q Consensus 378 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 418 (764)
..+|.+|++|+.+++.++.... ...+.+.+|+.+.+..+
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred HhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 4566677777777766654321 11224556666655544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.4e-13 Score=144.17 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=29.0
Q ss_pred cccEEEcccCccccc----CCccccCccccceecccccccccc----cCccccCCCCCCEEECcCCcCccc
Q 045580 571 YMTGLDFSCNELTGD----IPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDLSHNDLSGQ 633 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~ 633 (764)
.|++|||++|.+++. ++..+...++|+.|+|++|.|++. ++..+...++|++|||++|.|+..
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 345555555554431 233334444555555555555432 223333445555555555555533
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=5.5e-13 Score=141.36 Aligned_cols=165 Identities=19% Similarity=0.138 Sum_probs=117.6
Q ss_pred CCCCCEEEccCCcCCCcchhhhhc-----CCCccEEEccCCcCCccCCccc-cCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580 431 SSSLTVLDLRDNQFSGSIPIWINE-----FSYLGILLLRGNQLKGNIPNQL-CHLSLLNILDLSYNKFNGPIPVCFANVT 504 (764)
Q Consensus 431 ~~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 504 (764)
++.|+.|++++|.++......+.. .++|++|+|++|.+++.....+ ..+++|+.|+|++|.++......+...-
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356788888888877544333322 2688888888888765433333 2356789999999988643322222100
Q ss_pred hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580 505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG 584 (764)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 584 (764)
....+.|+.|+|++|.++.
T Consensus 151 -------------------------------------------------------------~~~~~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 151 -------------------------------------------------------------LHDQCQITTLRLSNNPLTA 169 (372)
T ss_dssp -------------------------------------------------------------HSTTCCCCEEECCSSCCHH
T ss_pred -------------------------------------------------------------HhcCCccceeeCCCCCCCh
Confidence 0012478999999999875
Q ss_pred ----cCCccccCccccceecccccccccc----cCccccCCCCCCEEECcCCcCccc----CcccccCCCCCCeEeccCC
Q 045580 585 ----DIPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDLSHNDLSGQ----IPPQLTELNFLSNFNVSYN 652 (764)
Q Consensus 585 ----~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~ls~N 652 (764)
.++..+...++|++|+|++|.|++. ++..+...++|+.|||++|.|+.. ++..+...+.|++||+++|
T Consensus 170 ~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 2455567889999999999999864 366778889999999999999853 4555667789999999999
Q ss_pred cccc
Q 045580 653 HLSG 656 (764)
Q Consensus 653 ~l~g 656 (764)
+++.
T Consensus 250 ~i~~ 253 (372)
T 3un9_A 250 ELSS 253 (372)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 9875
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=4.9e-10 Score=120.31 Aligned_cols=321 Identities=12% Similarity=0.155 Sum_probs=169.1
Q ss_pred ccccCchhhcCCC-CCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCC---CCCCCChhhhccCCCCcEEEccCCCCCC
Q 045580 84 LYGHLSPCLSNLT-HIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN---FEGSFSFNSLKNHSKLQVFKLSNSLVKI 159 (764)
Q Consensus 84 l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~l~~l~~L~~L~l~~~~~~~ 159 (764)
++.+-..+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++ .++...|.++.+|+.+.+..+...+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDSVTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTTCSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCcccee
Confidence 4445567888884 6999999865 776778899999999999998764 33 5666778888888888777665555
Q ss_pred ccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCC
Q 045580 160 ETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 238 (764)
Q Consensus 160 ~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 238 (764)
...+|... .+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++ .+....| ....|+.+.+..+...
T Consensus 129 ~~~aF~~c--~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF-~~~~l~~i~ip~~~~~------- 195 (394)
T 4gt6_A 129 DSEAFHHC--EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF-TGTALTQIHIPAKVTR------- 195 (394)
T ss_dssp CTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT-TTCCCSEEEECTTCCE-------
T ss_pred hhhhhhhh--cccccccccce-eeeecccceecccccccccccce-ee-Eeccccc-cccceeEEEECCcccc-------
Confidence 55444433 34666666532 33332 34455566666666543 22 3444444 2344555555443222
Q ss_pred CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCc-------------cccCCCCCCEEECCCCccccc
Q 045580 239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPS-------------SMSEMKRLESLDLSSNNFSGE 305 (764)
Q Consensus 239 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~ 305 (764)
+....+..+..++.............-. .+.....+..+.+... +. .
T Consensus 196 ------------------i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~ 255 (394)
T 4gt6_A 196 ------------------IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-R 255 (394)
T ss_dssp ------------------ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-E
T ss_pred ------------------cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce-E
Confidence 1112222234444444333322110000 0111122222222211 11 2
Q ss_pred CchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC
Q 045580 306 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS 385 (764)
Q Consensus 306 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 385 (764)
+... .|..+..|+.+.+..+... ....+|.++++|+.+.+.. .++......|.++.
T Consensus 256 i~~~----------------------aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~ 311 (394)
T 4gt6_A 256 IETH----------------------AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCI 311 (394)
T ss_dssp ECTT----------------------TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred cccc----------------------eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCC
Confidence 2222 3444555555555433222 3344566666666666643 33333345666667
Q ss_pred CCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEcc
Q 045580 386 GLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR 464 (764)
Q Consensus 386 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 464 (764)
+|+.+.|..+ ++.....+| ++.+|+.+.+..+ ++..-..+|.+|++|+.+++.++... ...+..+.+|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeC
Confidence 7777776543 444444555 6677777777543 44455567888888888888776532 2345666777777776
Q ss_pred CCcC
Q 045580 465 GNQL 468 (764)
Q Consensus 465 ~n~l 468 (764)
.+.+
T Consensus 387 ~~~~ 390 (394)
T 4gt6_A 387 PGSI 390 (394)
T ss_dssp ----
T ss_pred CCCE
Confidence 5543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=7.7e-12 Score=132.12 Aligned_cols=90 Identities=21% Similarity=0.187 Sum_probs=82.2
Q ss_pred ccccEEEccc-CcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580 570 NYMTGLDFSC-NELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648 (764)
Q Consensus 570 ~~L~~LdLs~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 648 (764)
++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 4799999996 999988889999999999999999999999999999999999999999999987777777776 99999
Q ss_pred ccCCccccCCCC
Q 045580 649 VSYNHLSGPTPN 660 (764)
Q Consensus 649 ls~N~l~g~~p~ 660 (764)
+++|++.|.++.
T Consensus 110 l~~N~~~c~c~l 121 (347)
T 2ifg_A 110 LSGNPLHCSCAL 121 (347)
T ss_dssp CCSSCCCCCGGG
T ss_pred eeCCCccCCCcc
Confidence 999999997763
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=5.1e-11 Score=125.77 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=94.1
Q ss_pred cEEEcccC-cccccCCccccCccccceecccc-cccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580 573 TGLDFSCN-ELTGDIPSEIGSLSEIRALNLSH-NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS 650 (764)
Q Consensus 573 ~~LdLs~N-~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 650 (764)
..++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|..|++|++|||+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45799998 898 5888 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCccccCCCCCCCCC
Q 045580 651 YNHLSGPTPNAGQFANFDEQNYGGNSGLCGP 681 (764)
Q Consensus 651 ~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~ 681 (764)
+|+|++..|.......+....+.+|+..|..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999986665544444777888899988854
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2.2e-08 Score=106.78 Aligned_cols=308 Identities=12% Similarity=0.151 Sum_probs=167.4
Q ss_pred ccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCC
Q 045580 68 ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKL 147 (764)
Q Consensus 68 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 147 (764)
+....+|+.+.+.. .++.+-..+|.++++|+.++|..+ ++.....+|.++ +|+.+.+..+ +. .++...|... +|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cc
Confidence 33445666666653 355555667888888888887654 555556677776 5666666543 32 3444445443 57
Q ss_pred cEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEcc
Q 045580 148 QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL 226 (764)
Q Consensus 148 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 226 (764)
+.+.+..+...+...+|... +++.+.+..+ +..+ ...+..+.+++.+.+..+........... .......
T Consensus 116 ~~i~lp~~~~~i~~~~F~~~---~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~--- 186 (379)
T 4h09_A 116 DDFEFPGATTEIGNYIFYNS---SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL--YNKNKTI--- 186 (379)
T ss_dssp SEEECCTTCCEECTTTTTTC---CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE--EETTSSE---
T ss_pred ccccCCCccccccccccccc---eeeeeeccce-eeccccchhcccccccccccccccceeeccccee--cccccce---
Confidence 77777655444444443322 3444444332 2222 12344455555555554432211000000 0000000
Q ss_pred CCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccC
Q 045580 227 NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306 (764)
Q Consensus 227 ~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 306 (764)
.........+..+.+..... .+....+.....|+.+.+..+ +......++..+..|+.+.+..+ +. .+
T Consensus 187 -------~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I 254 (379)
T 4h09_A 187 -------LESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SI 254 (379)
T ss_dssp -------EEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EE
T ss_pred -------ecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-Ee
Confidence 00011222333333332211 122222233566777776544 33344556777777877777655 43 56
Q ss_pred chhhhhCCCCCCEEEeecccccce--eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCC
Q 045580 307 PRQFLSGCFSLSFLSLSDNHLQGE--VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNL 384 (764)
Q Consensus 307 p~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 384 (764)
....+.++.+|+.+.+..+ +... ..|..+++|+.+.+.++.++.....+|.++.+|+.++|..+ ++.....+|.++
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 6666677777888777543 3222 26777788888888777777666777888888888888654 443445678888
Q ss_pred CCCCEEECcCCCCCCCCCCcc
Q 045580 385 SGLQFLDISENQLSGSVPSSF 405 (764)
Q Consensus 385 ~~L~~L~L~~n~l~~~~~~~~ 405 (764)
.+|+.+.+..+ ++.....+|
T Consensus 333 ~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 333 KALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp TTCCCCCCCTT-CCEECTTTT
T ss_pred CCCCEEEECCc-cCEEchhHh
Confidence 88888887654 444444555
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=2.3e-08 Score=106.68 Aligned_cols=316 Identities=14% Similarity=0.138 Sum_probs=206.9
Q ss_pred hhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCC
Q 045580 90 PCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE 169 (764)
Q Consensus 90 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 169 (764)
+++....+|+.+.+... ++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+...+...+|..
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~l~~I~~~aF~~--- 112 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMERVKKFGDYVFQG--- 112 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTTCCEECTTTTTT---
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCceeeEeccceecc---
Confidence 34666778899888754 66566778999999999999754 44 5666778777 677777776655566555543
Q ss_pred CCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEcc
Q 045580 170 YQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS 249 (764)
Q Consensus 170 ~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls 249 (764)
.+|+.+.+..+ +..+....+...+++.+.+..+ ++ .+....+..+..++...+..+......... ....
T Consensus 113 ~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~--------~~~~ 181 (379)
T 4h09_A 113 TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENY--------VLYN 181 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETT--------EEEE
T ss_pred CCcccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeecccc--------eecc
Confidence 35788887654 3444433333345666655543 22 344444556666766666544322110000 0000
Q ss_pred CCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329 (764)
Q Consensus 250 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 329 (764)
... .....+ .....+..+.+.... .......+..+.+|+.+.+..+ +. .++...+.++..|+.+.+..+ ++.
T Consensus 182 ~~~---~~~~~~-~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~ 253 (379)
T 4h09_A 182 KNK---TILESY-PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTS 253 (379)
T ss_dssp TTS---SEEEEC-CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCE
T ss_pred ccc---ceeccc-cccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccE
Confidence 000 111111 113455566554432 2345567788899999998765 33 566666788999999999775 433
Q ss_pred e--eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-c
Q 045580 330 E--VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-N 406 (764)
Q Consensus 330 ~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~ 406 (764)
. ..+.++.+|+.+.+..+ +......+|.++.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.....+| +
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 331 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN 331 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence 2 37888999999999754 55466678999999999999998887666788999999999999754 665556677 8
Q ss_pred CCCccEEeccCCccccccchhhcCCCCC
Q 045580 407 LSSLRRLYMHMNAFNGSIPGALRRSSSL 434 (764)
Q Consensus 407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L 434 (764)
+.+|+.+.+..+ ++..-..+|.++..+
T Consensus 332 C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 332 CKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 999999999765 554556778877544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=3.8e-09 Score=110.77 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=56.7
Q ss_pred cccccEEEcccCcccccCCccc---cCccccceecccccccccc----cCccccCCCCCCEEECcCCcCcccCcccccC-
Q 045580 569 LNYMTGLDFSCNELTGDIPSEI---GSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDLSHNDLSGQIPPQLTE- 640 (764)
Q Consensus 569 l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~- 640 (764)
+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4578888888888775443333 2577888888888888764 4445567788899999888887543333433
Q ss_pred CCCCCeEeccCCc
Q 045580 641 LNFLSNFNVSYNH 653 (764)
Q Consensus 641 l~~L~~L~ls~N~ 653 (764)
+ ...++++.|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3557777775
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=5.4e-09 Score=109.60 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=62.6
Q ss_pred cccccEEEccc--Cccccc-----CCccc--cCccccceecccccccccccCcccc---CCCCCCEEECcCCcCccc---
Q 045580 569 LNYMTGLDFSC--NELTGD-----IPSEI--GSLSEIRALNLSHNFLSGSIPQSLS---NLKMIESLDLSHNDLSGQ--- 633 (764)
Q Consensus 569 l~~L~~LdLs~--N~l~~~-----ip~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~LdLs~N~l~~~--- 633 (764)
+++|+.|+|+. |...+. +...+ ..+++|+.|+|++|.+++..+..+. .+++|++|||+.|.+++.
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~ 297 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence 45777787753 221111 11222 3578999999999999865544443 578999999999999864
Q ss_pred -CcccccCCCCCCeEeccCCcccc
Q 045580 634 -IPPQLTELNFLSNFNVSYNHLSG 656 (764)
Q Consensus 634 -ip~~l~~l~~L~~L~ls~N~l~g 656 (764)
++..+..+++|+.|++++|.++.
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHhhcccCCcceEEECCCCcCCH
Confidence 45555668999999999998764
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=7.8e-08 Score=90.82 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=29.4
Q ss_pred cccEEEcccCccccc----CCccccCccccceecc--cccccccc----cCccccCCCCCCEEECcCCcCc
Q 045580 571 YMTGLDFSCNELTGD----IPSEIGSLSEIRALNL--SHNFLSGS----IPQSLSNLKMIESLDLSHNDLS 631 (764)
Q Consensus 571 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~ 631 (764)
.|++|+|++|.++.. +...+...++|++|+| ++|.|+.. +...+...++|+.|+|++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 455555555555432 2333444445555555 44555433 2233344455555555555553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=7.8e-08 Score=90.84 Aligned_cols=86 Identities=17% Similarity=0.322 Sum_probs=67.2
Q ss_pred ccccEEEcccCccccc----CCccccCccccceecccccccccc----cCccccCCCCCCEEEC--cCCcCccc----Cc
Q 045580 570 NYMTGLDFSCNELTGD----IPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDL--SHNDLSGQ----IP 635 (764)
Q Consensus 570 ~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdL--s~N~l~~~----ip 635 (764)
+.|++|||++|++... +...+...++|++|+|++|.|+.. +...+...++|++|+| ++|.++.. +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3567777777777542 344455668899999999999865 5677888899999999 88999854 44
Q ss_pred ccccCCCCCCeEeccCCccc
Q 045580 636 PQLTELNFLSNFNVSYNHLS 655 (764)
Q Consensus 636 ~~l~~l~~L~~L~ls~N~l~ 655 (764)
+.+...+.|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 56666789999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=2.8e-07 Score=91.37 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=34.4
Q ss_pred Cccccceeccccccccc--ccCccccCCCCCCEEECcCCcCcccCcccccCCC--CCCeEeccCCccccCCC
Q 045580 592 SLSEIRALNLSHNFLSG--SIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN--FLSNFNVSYNHLSGPTP 659 (764)
Q Consensus 592 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~~p 659 (764)
++++|+.|+||+|+|++ .+|..++.+++|+.|+|++|+|++. ..+..+. .|+.|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 44555555555555554 2344445555555555555555543 2223333 55566666666555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=7.6e-07 Score=88.28 Aligned_cols=80 Identities=31% Similarity=0.471 Sum_probs=39.9
Q ss_pred CCCCCcEEECcCCcccc--cCchhhcCCCCCCEEECCCCCCCCcchhhhhCCC--CCCEEECcCCCCCCCCCh------h
Q 045580 70 ELKKLVELDLSKNNLYG--HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK--SLEYLSLDDNNFEGSFSF------N 139 (764)
Q Consensus 70 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~------~ 139 (764)
++++|++|+|++|.|++ .++..+..+++|++|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555555555555554 2334445555555555555555543 1222222 555555555555543331 2
Q ss_pred hhccCCCCcEEE
Q 045580 140 SLKNHSKLQVFK 151 (764)
Q Consensus 140 ~l~~l~~L~~L~ 151 (764)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244555555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=4.8e-06 Score=76.36 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=63.8
Q ss_pred CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCC-CCCcchhhhhCC----CCCCEEECcCCC-CCCCCChhhhccCC
Q 045580 72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ-LTGNLQSVIANI----KSLEYLSLDDNN-FEGSFSFNSLKNHS 145 (764)
Q Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~l~~l~ 145 (764)
-+|++||++++.+++.--..+..+++|++|+|++|. +++.--..++.+ ++|++|+|++|. ++ .-....+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHhcCC
Confidence 479999999999887766678899999999999994 876656667765 479999999985 55 22334566677
Q ss_pred CCcEEEccCCC
Q 045580 146 KLQVFKLSNSL 156 (764)
Q Consensus 146 ~L~~L~l~~~~ 156 (764)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777776654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=1.8e-05 Score=72.50 Aligned_cols=84 Identities=8% Similarity=-0.048 Sum_probs=60.7
Q ss_pred CCccEEeccCCccccccchhhcCCCCCCEEEccCCc-CCCcchhhhhcC----CCccEEEccCCc-CCccCCccccCCCC
Q 045580 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ-FSGSIPIWINEF----SYLGILLLRGNQ-LKGNIPNQLCHLSL 481 (764)
Q Consensus 408 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 481 (764)
..|+.||+++|.++..--..+..+++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356677777776665544556778888888888884 665544555553 478899998874 77655566778899
Q ss_pred CCEEeCCCCc
Q 045580 482 LNILDLSYNK 491 (764)
Q Consensus 482 L~~L~Ls~n~ 491 (764)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999885
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.33 E-value=0.00027 Score=61.74 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=42.6
Q ss_pred eecccccccc-cccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 045580 598 ALNLSHNFLS-GSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN 660 (764)
Q Consensus 598 ~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~ 660 (764)
.++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|+.|+|++|++.+.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 4555555554 23454332 4578888888888876677778888888888888888886653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.04 E-value=0.0002 Score=66.87 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=20.3
Q ss_pred hcCCCccEEEccCC-cCCcc----CCccccCCCCCCEEeCCCCcCc
Q 045580 453 NEFSYLGILLLRGN-QLKGN----IPNQLCHLSLLNILDLSYNKFN 493 (764)
Q Consensus 453 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 493 (764)
..-+.|+.|+|++| ++... +.+.+..-..|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 33455666666553 44421 2333444455555555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.001 Score=62.05 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=46.6
Q ss_pred cCCCCCcEEECcCC-ccccc----CchhhcCCCCCCEEECCCCCCCCc----chhhhhCCCCCCEEECcCCCCC
Q 045580 69 CELKKLVELDLSKN-NLYGH----LSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYLSLDDNNFE 133 (764)
Q Consensus 69 ~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 133 (764)
.+-+.|++|+|++| .|... +..++..-+.|+.|+|++|+|... +..++..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34567888888875 66532 456677778888888888888743 3445566778888888888775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.003 Score=54.96 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=47.7
Q ss_pred cEEEcccCccc-ccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580 573 TGLDFSCNELT-GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631 (764)
Q Consensus 573 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 631 (764)
..+|.++++++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 45776543 36899999999999766778899999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.17 E-value=11 Score=30.43 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=24.8
Q ss_pred ccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcC
Q 045580 84 LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129 (764)
Q Consensus 84 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 129 (764)
++.+-..+|.++++|+.+.+..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455666666666666554 3334445566666666665544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.16 E-value=47 Score=26.51 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=23.2
Q ss_pred CCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcC
Q 045580 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394 (764)
Q Consensus 350 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 394 (764)
+.....+|.++.+|+.+.|..+ ++..-...|.+|.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344455666666666666543 2223344566666666665544
Done!