Query 045581
Match_columns 107
No_of_seqs 115 out of 1042
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 99.7 5.9E-19 1.3E-23 139.3 3.3 79 3-82 238-316 (316)
2 PF03151 TPT: Triose-phosphate 99.7 3.1E-18 6.6E-23 118.8 6.1 71 2-73 83-153 (153)
3 KOG1444 Nucleotide-sugar trans 99.5 1.1E-14 2.5E-19 114.7 6.2 81 2-83 230-310 (314)
4 PTZ00343 triose or hexose phos 99.4 5.4E-13 1.2E-17 105.6 7.5 72 3-75 279-350 (350)
5 KOG1442 GDP-fucose transporter 99.3 1.3E-13 2.8E-18 108.1 -3.4 90 2-92 257-346 (347)
6 TIGR00817 tpt Tpt phosphate/ph 99.2 2.7E-11 6E-16 92.9 6.6 72 9-81 230-301 (302)
7 PF08449 UAA: UAA transporter 99.0 9.3E-10 2E-14 85.1 7.5 77 2-79 227-303 (303)
8 KOG1443 Predicted integral mem 98.9 1.7E-09 3.6E-14 85.8 6.1 71 2-73 245-315 (349)
9 COG5070 VRG4 Nucleotide-sugar 98.9 7.3E-10 1.6E-14 85.4 2.6 78 2-80 226-303 (309)
10 KOG1583 UDP-N-acetylglucosamin 98.4 5E-07 1.1E-11 71.2 5.4 77 2-79 244-320 (330)
11 PLN00411 nodulin MtN21 family 97.9 8.1E-05 1.8E-09 59.7 8.4 71 16-87 272-342 (358)
12 KOG1580 UDP-galactose transpor 97.8 5.3E-05 1.1E-09 59.2 6.4 67 4-71 245-311 (337)
13 PF04142 Nuc_sug_transp: Nucle 97.8 8.9E-05 1.9E-09 56.6 6.9 77 2-79 19-95 (244)
14 TIGR00803 nst UDP-galactose tr 97.7 1.7E-05 3.7E-10 58.5 1.4 61 10-71 162-222 (222)
15 PRK10532 threonine and homoser 97.6 0.00044 9.5E-09 53.2 8.4 65 16-81 225-289 (293)
16 PF06027 DUF914: Eukaryotic pr 97.5 0.00041 8.8E-09 55.6 7.1 66 16-82 249-314 (334)
17 KOG1581 UDP-galactose transpor 97.4 0.00017 3.6E-09 57.5 3.3 71 8-79 249-319 (327)
18 PF00892 EamA: EamA-like trans 97.3 0.00069 1.5E-08 44.1 5.6 67 5-72 58-125 (126)
19 PRK11689 aromatic amino acid e 97.0 0.0036 7.8E-08 48.1 7.0 63 10-73 225-287 (295)
20 PRK15430 putative chlorampheni 96.9 0.0038 8.2E-08 48.0 6.9 74 6-80 219-292 (296)
21 TIGR00688 rarD rarD protein. T 96.8 0.0061 1.3E-07 45.6 7.2 67 3-70 73-139 (256)
22 PLN00411 nodulin MtN21 family 96.7 0.0077 1.7E-07 48.3 7.3 70 3-73 81-156 (358)
23 TIGR00950 2A78 Carboxylate/Ami 96.7 0.0074 1.6E-07 44.6 6.7 69 4-73 51-119 (260)
24 TIGR00817 tpt Tpt phosphate/ph 96.7 0.0078 1.7E-07 46.1 7.0 68 3-71 68-135 (302)
25 PF13536 EmrE: Multidrug resis 96.6 0.018 3.9E-07 38.4 7.8 71 4-76 38-109 (113)
26 TIGR03340 phn_DUF6 phosphonate 96.6 0.011 2.3E-07 45.0 7.3 69 3-72 66-134 (281)
27 PRK15430 putative chlorampheni 96.6 0.013 2.8E-07 45.1 7.5 67 5-72 78-144 (296)
28 PRK11453 O-acetylserine/cystei 96.5 0.014 2.9E-07 44.9 7.3 57 19-76 234-290 (299)
29 TIGR00950 2A78 Carboxylate/Ami 96.5 0.01 2.2E-07 43.8 6.5 64 4-68 195-259 (260)
30 PRK11272 putative DMT superfam 96.4 0.021 4.5E-07 43.7 8.0 61 15-76 228-288 (292)
31 PF08449 UAA: UAA transporter 96.1 0.031 6.7E-07 43.2 7.4 80 4-84 68-147 (303)
32 PRK02971 4-amino-4-deoxy-L-ara 95.9 0.069 1.5E-06 37.2 7.9 68 4-73 51-122 (129)
33 TIGR03340 phn_DUF6 phosphonate 95.9 0.023 5.1E-07 43.2 5.8 64 6-70 217-280 (281)
34 PTZ00343 triose or hexose phos 95.9 0.039 8.4E-07 43.8 7.1 69 3-72 117-185 (350)
35 PRK15051 4-amino-4-deoxy-L-ara 95.8 0.062 1.3E-06 36.4 6.9 44 26-71 64-107 (111)
36 PRK09541 emrE multidrug efflux 95.6 0.037 8E-07 37.7 5.3 67 7-74 36-104 (110)
37 PRK10452 multidrug efflux syst 95.6 0.12 2.7E-06 35.8 8.0 67 8-75 37-105 (120)
38 KOG2234 Predicted UDP-galactos 95.5 0.054 1.2E-06 43.8 6.8 69 3-72 95-163 (345)
39 KOG3912 Predicted integral mem 95.5 0.01 2.3E-07 47.5 2.6 64 12-76 274-337 (372)
40 PF06027 DUF914: Eukaryotic pr 95.5 0.036 7.9E-07 44.5 5.6 70 4-74 83-152 (334)
41 COG0697 RhaT Permeases of the 95.2 0.12 2.7E-06 37.8 7.5 69 5-74 219-288 (292)
42 COG2076 EmrE Membrane transpor 95.2 0.05 1.1E-06 37.2 4.8 64 9-73 38-103 (106)
43 PRK10650 multidrug efflux syst 95.0 0.21 4.5E-06 34.1 7.4 45 26-71 62-106 (109)
44 COG2510 Predicted membrane pro 94.9 0.058 1.2E-06 38.5 4.5 69 2-71 69-137 (140)
45 PRK11431 multidrug efflux syst 94.9 0.28 6E-06 33.2 7.7 47 25-72 55-101 (105)
46 PRK11689 aromatic amino acid e 94.3 0.21 4.6E-06 38.3 6.9 67 5-72 66-136 (295)
47 COG0697 RhaT Permeases of the 94.3 0.21 4.6E-06 36.6 6.7 73 4-77 73-147 (292)
48 TIGR00776 RhaT RhaT L-rhamnose 93.5 0.26 5.5E-06 38.1 6.1 69 4-73 215-288 (290)
49 KOG2765 Predicted membrane pro 93.1 0.11 2.4E-06 42.8 3.6 74 4-78 163-236 (416)
50 KOG1582 UDP-galactose transpor 92.9 0.48 1E-05 38.1 6.8 67 9-76 269-335 (367)
51 PRK11453 O-acetylserine/cystei 92.7 0.69 1.5E-05 35.5 7.3 54 18-72 77-131 (299)
52 PRK11272 putative DMT superfam 91.8 1 2.3E-05 34.4 7.4 66 5-72 73-140 (292)
53 COG2962 RarD Predicted permeas 91.5 0.71 1.5E-05 36.7 6.2 59 23-82 234-292 (293)
54 PF04657 DUF606: Protein of un 90.2 1.6 3.5E-05 30.5 6.6 69 1-69 65-137 (138)
55 PF00893 Multi_Drug_Res: Small 90.1 1.1 2.5E-05 29.1 5.3 55 8-63 36-92 (93)
56 KOG2234 Predicted UDP-galactos 88.9 1.4 3E-05 35.8 6.0 60 18-78 268-327 (345)
57 TIGR00776 RhaT RhaT L-rhamnose 87.7 1.5 3.2E-05 33.9 5.3 62 13-75 72-138 (290)
58 KOG2766 Predicted membrane pro 86.6 0.71 1.5E-05 36.8 3.0 51 19-72 248-298 (336)
59 KOG4812 Golgi-associated prote 86.0 1.4 3.1E-05 34.3 4.4 81 2-82 162-253 (262)
60 KOG4510 Permease of the drug/m 84.4 0.53 1.1E-05 37.7 1.4 67 3-73 100-169 (346)
61 PF07857 DUF1632: CEO family ( 84.3 1.4 3.1E-05 34.2 3.7 29 53-81 114-142 (254)
62 COG5006 rhtA Threonine/homoser 78.4 7.3 0.00016 30.9 5.7 63 17-80 227-289 (292)
63 PF10639 UPF0546: Uncharacteri 76.8 2 4.2E-05 29.6 2.0 60 9-69 46-110 (113)
64 COG3238 Uncharacterized protei 67.8 21 0.00046 25.7 5.6 73 1-73 70-146 (150)
65 PRK13499 rhamnose-proton sympo 64.1 34 0.00074 27.7 6.8 52 27-80 101-160 (345)
66 KOG2765 Predicted membrane pro 63.5 16 0.00035 30.4 4.8 72 6-78 324-395 (416)
67 PF05653 Mg_trans_NIPA: Magnes 61.3 12 0.00027 29.3 3.7 56 16-72 66-121 (300)
68 COG2962 RarD Predicted permeas 58.7 13 0.00028 29.7 3.4 62 11-73 82-144 (293)
69 cd01324 cbb3_Oxidase_CcoQ Cyto 57.8 10 0.00023 22.1 2.1 26 60-85 18-43 (48)
70 PF12768 Rax2: Cortical protei 52.5 19 0.0004 28.3 3.4 37 62-98 243-281 (281)
71 PF05961 Chordopox_A13L: Chord 51.1 26 0.00057 22.1 3.2 25 56-80 5-29 (68)
72 KOG4314 Predicted carbohydrate 50.4 10 0.00022 29.4 1.6 60 14-74 67-126 (290)
73 PF06800 Sugar_transport: Suga 49.0 72 0.0016 25.1 6.1 65 5-70 200-268 (269)
74 PF07444 Ycf66_N: Ycf66 protei 47.7 24 0.00051 23.1 2.8 27 53-79 5-31 (84)
75 PF05545 FixQ: Cbb3-type cytoc 46.1 19 0.00042 20.6 2.0 25 59-83 16-40 (49)
76 PF14981 FAM165: FAM165 family 44.9 4.4 9.5E-05 24.0 -0.9 25 59-83 18-42 (51)
77 PF08507 COPI_assoc: COPI asso 42.2 63 0.0014 22.2 4.4 33 36-70 70-102 (136)
78 TIGR00806 rfc RFC reduced fola 42.1 74 0.0016 27.3 5.6 70 2-71 360-439 (511)
79 PHA03049 IMV membrane protein; 42.0 40 0.00088 21.3 3.0 25 56-80 5-29 (68)
80 KOG3912 Predicted integral mem 41.6 61 0.0013 26.4 4.7 57 16-73 102-158 (372)
81 PF04142 Nuc_sug_transp: Nucle 40.1 55 0.0012 24.8 4.2 47 16-63 197-243 (244)
82 PF04971 Lysis_S: Lysis protei 40.0 29 0.00063 21.9 2.2 32 53-84 33-65 (68)
83 TIGR01167 LPXTG_anchor LPXTG-m 40.0 46 0.00099 17.1 2.7 16 52-67 9-24 (34)
84 PF06800 Sugar_transport: Suga 38.7 1.7E+02 0.0036 23.0 6.7 45 35-80 81-129 (269)
85 PF01102 Glycophorin_A: Glycop 37.2 15 0.00033 25.6 0.7 13 68-80 83-95 (122)
86 PF05337 CSF-1: Macrophage col 37.1 11 0.00024 29.9 0.0 26 53-78 230-255 (285)
87 KOG1581 UDP-galactose transpor 36.9 88 0.0019 25.4 5.0 67 11-78 94-160 (327)
88 PF15102 TMEM154: TMEM154 prot 32.1 42 0.00091 24.2 2.3 22 58-79 66-87 (146)
89 PRK12437 prolipoprotein diacyl 29.9 66 0.0014 24.8 3.2 24 53-76 235-258 (269)
90 PF10855 DUF2648: Protein of u 29.8 13 0.00029 20.2 -0.5 21 61-81 6-26 (33)
91 KOG2922 Uncharacterized conser 28.6 1.7E+02 0.0036 24.0 5.3 75 6-80 234-313 (335)
92 PF04799 Fzo_mitofusin: fzo-li 28.0 20 0.00043 26.5 0.0 46 40-87 33-78 (171)
93 COG4736 CcoQ Cbb3-type cytochr 27.6 44 0.00096 20.5 1.5 28 57-84 14-41 (60)
94 PRK02237 hypothetical protein; 27.0 1.4E+02 0.0031 20.5 4.1 42 28-70 61-102 (109)
95 PF02694 UPF0060: Uncharacteri 25.9 1.5E+02 0.0033 20.3 4.0 42 28-70 59-100 (107)
96 KOG2766 Predicted membrane pro 24.8 6.1 0.00013 31.6 -3.4 54 21-75 99-152 (336)
97 COG0342 SecD Preprotein transl 24.6 2.1E+02 0.0045 24.5 5.5 61 4-66 346-406 (506)
98 PF11022 DUF2611: Protein of u 24.3 93 0.002 19.7 2.6 36 44-79 4-39 (71)
99 KOG4510 Permease of the drug/m 23.7 44 0.00095 27.0 1.2 71 3-76 256-328 (346)
100 PRK13108 prolipoprotein diacyl 23.5 1.1E+02 0.0023 25.9 3.5 24 53-76 254-277 (460)
101 PF04550 Phage_holin_2: Phage 23.1 1.3E+02 0.0028 20.0 3.2 23 41-63 18-40 (89)
102 KOG4320 Uncharacterized conser 22.3 41 0.00088 26.4 0.8 25 50-74 112-136 (253)
103 PF04342 DUF486: Protein of un 22.3 85 0.0018 21.6 2.3 27 41-68 77-103 (108)
104 PF14880 COX14: Cytochrome oxi 22.1 22 0.00049 21.3 -0.5 25 52-76 15-39 (59)
105 PF02439 Adeno_E3_CR2: Adenovi 21.6 1.4E+02 0.003 16.8 2.7 25 57-81 12-36 (38)
106 PF05653 Mg_trans_NIPA: Magnes 21.3 2.7E+02 0.0059 21.8 5.3 42 37-78 251-297 (300)
107 COG5336 Uncharacterized protei 21.1 2.9E+02 0.0064 19.1 5.0 52 39-93 58-112 (116)
108 PF03083 MtN3_slv: Sugar efflu 21.1 1E+02 0.0022 19.1 2.4 50 27-77 36-85 (87)
109 PRK10532 threonine and homoser 20.9 3.4E+02 0.0073 20.5 5.7 18 57-74 146-163 (293)
110 PF15055 DUF4536: Domain of un 20.8 69 0.0015 18.8 1.4 25 59-83 9-33 (47)
111 COG3296 Uncharacterized protei 20.1 2.4E+02 0.0051 20.2 4.2 32 37-69 76-107 (143)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.74 E-value=5.9e-19 Score=139.33 Aligned_cols=79 Identities=38% Similarity=0.661 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCccc
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKE 82 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~ 82 (107)
+++..+++|++|++.|+++++|||+||+|+|++|++++++.||++|+ +|+|+.|..|++++++|.++|++.|.++++++
T Consensus 238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~-~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~ 316 (316)
T KOG1441|consen 238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFG-NPVTFLNALGYAIAILGVFLYSRAKLKEKKGK 316 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeec-CCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 34455999999999999999999999999999999999999999998 59999999999999999999999999887653
No 2
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.74 E-value=3.1e-18 Score=118.80 Aligned_cols=71 Identities=41% Similarity=0.696 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
.++++|++++++|+++|++++++||+|++|+|++|+++++++|+++|| |++|+.++.|+.+++.|+++|+|
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~-~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFG-EPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcC-CcCCHHHHHHHHHHHHHHheeeC
Confidence 578899999999999999999999999999999999999999999999 58999999999999999999986
No 3
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-14 Score=114.69 Aligned_cols=81 Identities=25% Similarity=0.538 Sum_probs=75.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
.+++||+++|.+|++.++|...+||+|++++| +|+.+.+.++++.++|.++++.+++|+.+.+.|..+|++.+.++++.
T Consensus 230 ~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 230 VMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 46899999999999999999999999999999 99999999999999889999999999999999999999999887766
Q ss_pred cc
Q 045581 82 ER 83 (107)
Q Consensus 82 ~~ 83 (107)
++
T Consensus 309 ~~ 310 (314)
T KOG1444|consen 309 PP 310 (314)
T ss_pred CC
Confidence 55
No 4
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.41 E-value=5.4e-13 Score=105.55 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhc
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNAS 75 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k 75 (107)
++.+|+.++++|.++|++++++||+|++|.+++|+++++++|+++|| |++|+.+++|.+++++|.++|++.|
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~g-e~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQ-TQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhC-CCCchHhHHHHHHHHHHHHHHhhcC
Confidence 56789999999999999999999999999999999999999999999 6999999999999999999999874
No 5
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.3e-13 Score=108.09 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=82.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
++.+||+++|.+|+.+++.|+.|||+||+|.|..|.+.+.++++.+++ |..+...+.|-.+.+.|+..|++.|..|.++
T Consensus 257 ~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~-E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 257 LMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYS-ETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHH-HHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999998 6899999999999999999999999999888
Q ss_pred cccccCCCccc
Q 045581 82 ERRSLSLPKSQ 92 (107)
Q Consensus 82 ~~~~~~~~~~~ 92 (107)
+.+++|.+..|
T Consensus 336 ~~~~~s~~~~~ 346 (347)
T KOG1442|consen 336 ASAQRSPATQK 346 (347)
T ss_pred hccCCCccccc
Confidence 77776665544
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.22 E-value=2.7e-11 Score=92.90 Aligned_cols=72 Identities=25% Similarity=0.444 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581 9 IAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 9 laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
..++.|...|.+++++||+|.++.+.+|.++.+++|++++| |++|+.+++|..+++.|.++|++.|.++++.
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lg-e~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFG-TKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcC-CCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 56677889999999999999999999999999999999998 6899999999999999999999987665543
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.02 E-value=9.3e-10 Score=85.05 Aligned_cols=77 Identities=23% Similarity=0.442 Sum_probs=70.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG 79 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~ 79 (107)
.+++.++.+++-+...+.+++++||++.++++.+|+.+++++|+++|| +++++.+++|+.+.+.|..+|++.|.+++
T Consensus 227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~-~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFG-HPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcC-CcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 356778888888888899999999999999999999999999999998 79999999999999999999999988764
No 8
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.94 E-value=1.7e-09 Score=85.84 Aligned_cols=71 Identities=24% Similarity=0.444 Sum_probs=67.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
.+.+.|.++|++-+++|.+..+||.+|.+++|++|++++++++.++-+| .++..++.|..+++.|...|.+
T Consensus 245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d-~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD-QLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999999999999985 7999999999999999999933
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.90 E-value=7.3e-10 Score=85.35 Aligned_cols=78 Identities=22% Similarity=0.423 Sum_probs=73.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCc
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
.+++||++++.+.+++-||+..||+.|++++|.+++..+.+.|.++|| +|.+...+..+.+.+.....|+++|.+++|
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffd-ap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFD-APVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999997 799999999999999999999999876443
No 10
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.40 E-value=5e-07 Score=71.25 Aligned_cols=77 Identities=13% Similarity=0.304 Sum_probs=70.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG 79 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~ 79 (107)
.++.+++.-++=-=..|.+..+|++||.+++=++++.+.+++|+++|+ ||+|+..++|..+.+.|.++|+....+.+
T Consensus 244 yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~-Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 244 YLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFE-NPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred HHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEec-CCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 467777777777777888889999999999999999999999999997 89999999999999999999999887766
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.88 E-value=8.1e-05 Score=59.67 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=61.7
Q ss_pred HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcccccccC
Q 045581 16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKERRSLS 87 (107)
Q Consensus 16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~~~~~~ 87 (107)
.-++++++.+|...++...+--++.+++|++++| |++++.+++|.++.+.|..+-++.+.+|.+++..+-+
T Consensus 272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~Lg-E~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~ 342 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN-DSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFS 342 (358)
T ss_pred HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcc
Confidence 3456899999999999999999999999999999 7999999999999999999988877766555555544
No 12
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.84 E-value=5.3e-05 Score=59.23 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581 4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY 71 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y 71 (107)
.+-++.+.+=....|+.+...+|||.+|+-..++.+++++|+++|+ ||++.+|++|..+.+.|...=
T Consensus 245 ~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~-npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 245 TLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFN-NPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHhhhH
Confidence 3445556666788999999999999999999999999999999998 899999999999999887553
No 13
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.78 E-value=8.9e-05 Score=56.60 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=71.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG 79 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~ 79 (107)
.+.+.+++....|...|......+|.|++|....|-+.+.++++++++ .+++..+++++.+.+.|..+.+.......
T Consensus 19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~-r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLK-RRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHheeecCCcccc
Confidence 356789999999999999999999999999999999999999999999 58999999999999999999888766653
No 14
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.67 E-value=1.7e-05 Score=58.51 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581 10 AVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY 71 (107)
Q Consensus 10 af~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y 71 (107)
.....++..+++++.|+++.+++..++.++..++|+++|| +++++.++.|..+.+.|.++|
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~-~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFD-AKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHeeeEeC
Confidence 3334466889999999999999999999999999999998 799999999999999998877
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.61 E-value=0.00044 Score=53.15 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=57.5
Q ss_pred HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581 16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
.-+..+++.+|...++...+--++.++.|++++| |++++.+++|..+.+.|.+.++....+|.+.
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lg-E~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~ 289 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLG-ETLTLIQWLALGAIIAASMGSTLTIRREPKI 289 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3467899999999999999999999999999998 7899999999999999999998776554443
No 16
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.50 E-value=0.00041 Score=55.58 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=56.4
Q ss_pred HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCccc
Q 045581 16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKE 82 (107)
Q Consensus 16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~ 82 (107)
..-.++..+||+.+++.-..=+...++.++++|| +++++.-++|.++.+.|.++|+....++.++.
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~-~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~ 314 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFG-YKFSWLYILAFALIIIGFVVYNLAESPEEEAR 314 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcC-ccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence 3345789999999999888889999999999998 68999999999999999999998766544433
No 17
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.00017 Score=57.52 Aligned_cols=71 Identities=24% Similarity=0.351 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581 8 SIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG 79 (107)
Q Consensus 8 ~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~ 79 (107)
+++-.=.+..|..+.+-.|+|++++-..++.+.+.++.++|| +++++.|+.|..+.+.|.++=.+.|.+++
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~-h~~s~~q~~g~~iVFg~i~l~~~~k~~~~ 319 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFG-HPLSSEQWLGVLIVFGGIFLEILLKKKKN 319 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhC-CccchhhccCeeeehHHHHHHHHHHHhcc
Confidence 334444456788999999999999999999999999999998 79999999999999999988777776633
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.34 E-value=0.00069 Score=44.06 Aligned_cols=67 Identities=18% Similarity=0.442 Sum_probs=58.4
Q ss_pred hHHHH-HHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 5 LSCSI-AVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 5 lsg~l-af~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
..|++ ..+-++.-+...+++++-..++....--++..++++++++ |++++.+++|+.+.+.|.++-+
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~-e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLG-ERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 34444 4666777888899999999999999999999999999998 7899999999999999998754
No 19
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.95 E-value=0.0036 Score=48.12 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 10 AVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 10 af~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
..+--+.-+..+++.+|...++...+.=++.+++|++++| |++++.+++|..+.+.|..+-..
T Consensus 225 t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lg-E~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 225 MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLS-TPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhHHHHhh
Confidence 3333445578899999999999999999999999999998 79999999999999999866644
No 20
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.92 E-value=0.0038 Score=48.04 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCc
Q 045581 6 SCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 6 sg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
.|+.+..-.++-+..+++.+|-..+....+.-++.++.|++++| |++++.+++|..+.+.|..+.........|
T Consensus 219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~-E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~ 292 (296)
T PRK15430 219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYG-EKPGADKMVTFAFIWVALAIFVMDAIYTQR 292 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34344445567778899999999999999999999999999998 799999999999998888877766554433
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.83 E-value=0.0061 Score=45.56 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIW 70 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~ 70 (107)
+.+.|++....+.+-+..++++++-+-++....--+.+.++++++++ |+++..++.|+.+++.|+.+
T Consensus 73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~-Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLK-ERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 45567776777788888899999999999999999999999999998 79999999999999999874
No 22
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.69 E-value=0.0077 Score=48.34 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhc------cCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIF------FGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~------fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
+++.|++++..+...+.-.+++||..-++....-=+.+.++++++ ++ |+.+..+++|+++++.|..+=..
T Consensus 81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~-er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFK-ERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhc-ccccHHHHHHHHHHHHHHHHHHH
Confidence 456677776777788899999999999999999999999999999 67 79999999999999999986443
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.69 E-value=0.0074 Score=44.63 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
+++++...+.+..-|..++++++-.-++.-...-+.+.++++++++ |++++.+++|+.+++.|..+...
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~-e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGK-ERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHhhcc
Confidence 3444445566677788999998888888888999999999999998 79999999999999999988753
No 24
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.68 E-value=0.0078 Score=46.10 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY 71 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y 71 (107)
++..|++..+.+...+..++++|+-..++.-..--+++.++++++++ |+++..++.|+.++++|+.+-
T Consensus 68 ~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~-e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 68 LLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLG-QEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhhh
Confidence 34456666777788999999999999999999999999999999998 799999999999999999764
No 25
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.64 E-value=0.018 Score=38.37 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=54.2
Q ss_pred hhHHHHHH-HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581 4 ILSCSIAV-GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 4 llsg~laf-~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
++.|+++. .-+..-++-.+...+ ..++.-.+--++..++|+++|+ |+++..+++|..+++.|+++=.+...
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~-er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFK-ERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34466665 445555566666665 5557777788899999999998 79999999999999999988666543
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.61 E-value=0.011 Score=45.05 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
++++++......++.+...++.++-.-++.....-+...+++++++| |+++..+++|+.+++.|..+=.
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~-e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLG-ETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh
Confidence 45677777778888888888888888888888889999999999998 6999999999999999987644
No 27
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.56 E-value=0.013 Score=45.07 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 5 LSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 5 lsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
++++.....+.+-|+.++++++..-++....--+.+.++++++++ |+++..+++|+.+++.|..+-.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~-E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG-ERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHH
Confidence 455556667888899999999999999999999999999999998 7999999999999999988654
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.51 E-value=0.014 Score=44.94 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=49.6
Q ss_pred HHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581 19 ICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 19 ~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
..+++..|.+.++...+-=++.++.|++++| |++++.+++|..+.+.|..+=.+.+.
T Consensus 234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lg-E~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 234 TLLGRYETWRVAPLSLLVPVVGLASAALLLD-ERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHhcchh
Confidence 4568889999999999999999999999998 78999999999999999987555443
No 29
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.51 E-value=0.01 Score=43.85 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=53.2
Q ss_pred hhHHHHHHHH-HHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHH
Q 045581 4 ILSCSIAVGT-NLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGM 68 (107)
Q Consensus 4 llsg~laf~l-N~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~ 68 (107)
+..|+++..+ ...-+..+++.++.+.++...+.-+..++++++++| |++++.+++|..+.+.|.
T Consensus 195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~-E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 195 LYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILG-ETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhc
Confidence 3344444333 334566899999999999999999999999999998 799999999999999886
No 30
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.43 E-value=0.021 Score=43.75 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=54.3
Q ss_pred HHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581 15 LSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 15 ~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
..-+..+++.++-..++...+.-+...+.|++++| |++|+.+++|..+.+.|.++-+..+.
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~-E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGG-ETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566788999999999999999999999999998 79999999999999999998876443
No 31
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.10 E-value=0.031 Score=43.18 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcccc
Q 045581 4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKER 83 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~~ 83 (107)
+.-+++-++-+..+.....+.|-=++.+.=..|-+.+.++|+++++ .+.++.++.+.++.++|.+++...+.++++...
T Consensus 68 ~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~-k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~ 146 (303)
T PF08449_consen 68 AILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILG-KRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN 146 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcC-ccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence 3456667777788889999999999999999999999999999998 589999999999999999999988766555443
Q ss_pred c
Q 045581 84 R 84 (107)
Q Consensus 84 ~ 84 (107)
.
T Consensus 147 ~ 147 (303)
T PF08449_consen 147 S 147 (303)
T ss_pred c
Confidence 3
No 32
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=95.95 E-value=0.069 Score=37.25 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHhccChhhh--hhhhhhhhHHHHhhhh--hccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 4 ILSCSIAVGTNLSQFICIGRFTAVTF--QVLGHMKTILVLVLGF--IFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~~tSalT~--sV~G~vK~v~~i~~g~--~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
+..|+.++.+.+......-+.-|++. .+.... -+...+.++ ++|| |++|+.+++|+.+.++|+++-+.
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~-~~~v~~~~~~~~~~~-E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLS-YALVYLAAMLLPWFN-ETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH-HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHhcc
Confidence 45566666666665555444444433 333222 133444555 4788 79999999999999999999764
No 33
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=95.91 E-value=0.023 Score=43.18 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 045581 6 SCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIW 70 (107)
Q Consensus 6 sg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~ 70 (107)
+++....-...-+..+++..+-..+....+--++.+++|++++| |++++.+++|..+.+.|..+
T Consensus 217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lg-E~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLN-ERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHhHHh
Confidence 33333344445556778888877777777778999999999998 79999999999999999865
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=95.86 E-value=0.039 Score=43.81 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
++.-|+++++.++..+..++.+|+-..++.-..-=+++.++++++++ |+.+..++.|+++.++|+.+=.
T Consensus 117 llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~-ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 117 FLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLK-QFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHhee
Confidence 44567777777777888889999988888888888889999999998 6999999999999999998743
No 35
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.79 E-value=0.062 Score=36.36 Aligned_cols=44 Identities=11% Similarity=0.307 Sum_probs=37.3
Q ss_pred hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581 26 AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY 71 (107)
Q Consensus 26 alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y 71 (107)
...|.+.. +--+.+.++|+++|| |++|+.+++|+.+.+.|.++=
T Consensus 64 g~Ay~~~~-l~~v~~~~~~~l~f~-E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 64 GIAYPMLS-LNFVWVTLAAVKLWH-EPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHH
Confidence 45566666 777888999999998 799999999999999998763
No 36
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.61 E-value=0.037 Score=37.72 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhccC--hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581 7 CSIAVGTNLSQFICIGRFT--AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 7 g~laf~lN~s~f~~i~~tS--alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
++..+.+++..+...-+.= .+.|++-.-+-.+.+.+.|+++|| |++|+.+++|+.+.+.|+..=+..
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~-e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444443333222 456777666778889999999998 799999999999999999987543
No 37
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.60 E-value=0.12 Score=35.76 Aligned_cols=67 Identities=12% Similarity=0.293 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhcc--ChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhc
Q 045581 8 SIAVGTNLSQFICIGRF--TAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNAS 75 (107)
Q Consensus 8 ~laf~lN~s~f~~i~~t--SalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k 75 (107)
+..+.+++..+...-+. =.+.|++-.-+-.+.+.++|+++|| |++|+.+++|+.+.+.|++.=+...
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~-E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFD-ESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34444444443333333 3456778666678889999999998 7999999999999999998865443
No 38
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.054 Score=43.84 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
+.+.+++....|.-.|....+.+|.||+|+.++|-..+.++++++.+ ++.++.|+.-+.+.++|+..=+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~-rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILR-RKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHh
Confidence 45667888899999999999999999999999999999999999998 5899999999999999998887
No 39
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.53 E-value=0.01 Score=47.48 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581 12 GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 12 ~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
+.|++...+.+..|+.|-.+.-.++..++=++++..+- |.+...++.|.++-+.|.+.|+..-.
T Consensus 274 ffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~-E~f~llqilGFliLi~Gi~lY~~il~ 337 (372)
T KOG3912|consen 274 FFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGW-EYFHLLQILGFLILIMGIILYNQILF 337 (372)
T ss_pred eeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999987 78999999999999999999997644
No 40
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.46 E-value=0.036 Score=44.45 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581 4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
++-|++=+.-|+.......+||-.+.++....--++..++|+++.+ ++.++.+++|+.++++|..+=..+
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~-~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLK-RRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhhhheeee
Confidence 3446777888999999999999999999999999999999999998 689999999999999998865444
No 41
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.25 E-value=0.12 Score=37.83 Aligned_cols=69 Identities=20% Similarity=0.371 Sum_probs=55.6
Q ss_pred hHHHHHHH-HHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581 5 LSCSIAVG-TNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 5 lsg~laf~-lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
..|+++.. --..-+...++.++...+......-+..++.+++++| |+++..+.+|..+.+.|..+....
T Consensus 219 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~-e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 219 YLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLG-EPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhcc
Confidence 33444443 3344456788889998888888888888889999998 799999999999999999998876
No 42
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.05 Score=37.21 Aligned_cols=64 Identities=17% Similarity=0.355 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhccC--hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 9 IAVGTNLSQFICIGRFT--AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 9 laf~lN~s~f~~i~~tS--alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
.++..++.-+-..-++= .+.|+|-.=+=.+.+.+.|+++|| |++++.+++|+.+.+.|...=+.
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~-E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFG-ESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcC-CcCCHHHHHHHHHHHHHHHHhhh
Confidence 34444444443333333 457888888889999999999998 79999999999999999987554
No 43
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.00 E-value=0.21 Score=34.12 Aligned_cols=45 Identities=29% Similarity=0.595 Sum_probs=40.3
Q ss_pred hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581 26 AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY 71 (107)
Q Consensus 26 alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y 71 (107)
.++|+|-.-+-.+.+.+.|+++|| |++|+.+++|+.+.+.|+..=
T Consensus 62 gvAYAvW~GiG~v~~~~ig~~~f~-e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 62 SVAYALWGGFGIAATLAAGWILFG-QRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 467888888888999999999998 799999999999999998763
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=94.87 E-value=0.058 Score=38.50 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY 71 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y 71 (107)
++.+||+.+-+--+.=|+.++.=-+=-..=.-..--++.+++|++++| |.+|..+++|+.+...|..+-
T Consensus 69 flilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~-E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 69 FLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLG-ERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhCeeeE
Confidence 467788666666666666655432221122233335678899999998 789999999999999998653
No 45
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.86 E-value=0.28 Score=33.20 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=41.9
Q ss_pred ChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 25 TAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 25 SalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
=.++|++-.-+-.+.+.++|+++|| |++|+.+++|+.+.+.|++.=+
T Consensus 55 ~gvaYAvW~GiG~v~~~lig~~~f~-e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 55 VGTAYAVWTGIGAVGAAITGIVLLG-ESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhh
Confidence 3567888888889999999999998 7999999999999999998754
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=94.32 E-value=0.21 Score=38.29 Aligned_cols=67 Identities=19% Similarity=0.382 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHh----ccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 5 LSCSIAVGTNLSQFICIG----RFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 5 lsg~laf~lN~s~f~~i~----~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
++++.....+...|+-.+ .+++..-++....--+.+.++++++++ |+++..+++|+.+++.|..+=.
T Consensus 66 ~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~-e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 66 AGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNG-QKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhHhhee
Confidence 334433334444444333 445555567777778888899999997 7999999999999999987654
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.31 E-value=0.21 Score=36.60 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=56.3
Q ss_pred hhHHHHHH-HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhh-hccCCcccchhhHHHHHHHHHHHHHHhhhccC
Q 045581 4 ILSCSIAV-GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGF-IFFGKEGLNMQVILGMVIAVLGMIWYGNASSK 77 (107)
Q Consensus 4 llsg~laf-~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~-~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~ 77 (107)
++.+.+.. ..+..-|..++++++-..++....--+...++++ ++++ |+++..++.|..+.+.|.++-......
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 73 LLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLG-ERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 34444444 4445555558889998888888888999999997 5557 689999999999999999887765443
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=93.53 E-value=0.26 Score=38.12 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHHh-ccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhH----HHHHHHHHHHHHHhh
Q 045581 4 ILSCSIAVGTNLSQFICIG-RFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVI----LGMVIAVLGMIWYGN 73 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~-~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~----~G~~l~~~G~~~Ys~ 73 (107)
++.|++...-+..-+.-.. +..+-+.++...+--++.++.++++++ |+.++.+. +|..+.+.|..+=..
T Consensus 215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~-E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILG-EKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhc-cCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 3467774333444445556 889999999999999999999999998 79999999 999999999887544
No 49
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.10 E-value=0.11 Score=42.79 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCC
Q 045581 4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKP 78 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~ 78 (107)
+.=|.+=|+-|+..-..+..||.-..++....-..+++.+|.++-+ |++|+..+++..++++|+++=+....+.
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~-e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPV-ERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCc-chhhHHHHHHHHHhhccEEEEEeccccc
Confidence 4457888999999999999999999999999999999999999998 6899999999999999999877765544
No 50
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.91 E-value=0.48 Score=38.06 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581 9 IAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 9 laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
.+|+=-.+..-+|+...|++...+-..++.+++++|+++|. .|+|.+-.-|.++.+.|.++--+.|.
T Consensus 269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFs-KPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFS-KPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHc-CchHHHHhhhhHHHHHHHHhhcccCC
Confidence 34444445566788899999999999999999999999998 59999999999999999998777763
No 51
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=92.69 E-value=0.69 Score=35.47 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=40.0
Q ss_pred HHHHhcc-ChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 18 FICIGRF-TAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 18 f~~i~~t-SalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
|....++ ++-.-++.-..--+.+.++++++++ |+++..+++|..+++.|..+=.
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~-e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFG-ERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHhHHHhc
Confidence 4444553 3333344455567888999999998 7999999999999999987654
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=91.79 E-value=1 Score=34.36 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=45.3
Q ss_pred hHHHHHHH-HHHHHHHHH-hccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 5 LSCSIAVG-TNLSQFICI-GRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 5 lsg~laf~-lN~s~f~~i-~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
+.|.+.+. .+...++.. ..+++-.-++.-..--+.+.+++++ ++ |+++..+++|+.+++.|.++=.
T Consensus 73 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~-e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 73 LIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FG-IRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hc-ccCchhHHHHHHHHHHhHHHHh
Confidence 34444332 233444444 5566555566666677777888875 77 7999999999999999987754
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=91.49 E-value=0.71 Score=36.72 Aligned_cols=59 Identities=17% Similarity=0.335 Sum_probs=47.6
Q ss_pred ccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCccc
Q 045581 23 RFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKE 82 (107)
Q Consensus 23 ~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~ 82 (107)
+.+=-+..+..-+--..+.++++++|| |+++..+.+.....-.|.++|+....++.+|+
T Consensus 234 ~lpls~~G~lqYi~Ptl~fllav~i~~-E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~ 292 (293)
T COG2962 234 RLPLSTLGFLQYIEPTLMFLLAVLIFG-EPFDSDQLVTFAFIWLALALFSIDGLYTARKK 292 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555556667788899999998 79999999999999999999999988766654
No 54
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.24 E-value=1.6 Score=30.53 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=51.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhh--cc--CCcccchhhHHHHHHHHHHHH
Q 045581 1 FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFI--FF--GKEGLNMQVILGMVIAVLGMI 69 (107)
Q Consensus 1 ~~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~--~f--g~~~~t~~~~~G~~l~~~G~~ 69 (107)
|+..+.|+++.++-.+....+.+..+....+.-..=+++.-++=-- +| ..+++++.++.|..+.+.|.+
T Consensus 65 ~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 65 WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4567799999999999999999988887776665554443332222 12 335899999999999999986
No 55
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=90.10 E-value=1.1 Score=29.07 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhccC--hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHH
Q 045581 8 SIAVGTNLSQFICIGRFT--AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVI 63 (107)
Q Consensus 8 ~laf~lN~s~f~~i~~tS--alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l 63 (107)
+.++.+++.-+...-+.= .+.|.+-.-+-.+.+.+.|+++|| |++|+.+++|+.+
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~-E~~s~~~~~gi~l 92 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFG-ESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHhheee
Confidence 345555554444443333 455667666677899999999998 7999999999876
No 56
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=88.85 E-value=1.4 Score=35.82 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=50.5
Q ss_pred HHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCC
Q 045581 18 FICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKP 78 (107)
Q Consensus 18 f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~ 78 (107)
-+++++.+.+.-.-+-.+--++..++|+.+|| .++|..=.+|..+.+....+|+..+.++
T Consensus 268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~-~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 268 SLVMKYADNILKGFSTSVAIILTTVASIALFD-FQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 35677777777777777778888999999997 6899999999999999999999666665
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=87.69 E-value=1.5 Score=33.85 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=42.5
Q ss_pred HHHHHHHHHhccChhhh-hhhhhhhhHHHHhhhhhccCCcccchhh----HHHHHHHHHHHHHHhhhc
Q 045581 13 TNLSQFICIGRFTAVTF-QVLGHMKTILVLVLGFIFFGKEGLNMQV----ILGMVIAVLGMIWYGNAS 75 (107)
Q Consensus 13 lN~s~f~~i~~tSalT~-sV~G~vK~v~~i~~g~~~fg~~~~t~~~----~~G~~l~~~G~~~Ys~~k 75 (107)
-|++-|..+++++.-+- .+....--+...+.|.++|+ |+.+..+ ++|+.+++.|.++....+
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~-e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFG-EWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 34556666665443222 11133444577789999998 6888888 999999999999986654
No 58
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=86.56 E-value=0.71 Score=36.80 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=43.4
Q ss_pred HHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 19 ICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 19 ~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
.+++.+|+..+++.-..-|.-.+++ -.|| -+++|.-.+..+++..|.+.|+
T Consensus 248 il~k~~~aT~~nlslLTsDmwsl~i--~~Fg-Yhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFG-YHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HheecCCceEEEhhHhHHHHHHHHH--HHHh-cchhhhhHHHHHHHHHhhEEee
Confidence 4678899999998877777777776 6677 5799999999999999999993
No 59
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=86.05 E-value=1.4 Score=34.34 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhcc---CC---cccchhhHHHHHHHHHHHHH-----
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFF---GK---EGLNMQVILGMVIAVLGMIW----- 70 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~f---g~---~~~t~~~~~G~~l~~~G~~~----- 70 (107)
.++++-++||+.|+..|++....+-.--.=-|..-..-..++.|++- .| ...+-+.+++-+++++|.++
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~~ 241 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRGF 241 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999998764433322233333344444444432 11 13444455666666666553
Q ss_pred HhhhccCCCccc
Q 045581 71 YGNASSKPGGKE 82 (107)
Q Consensus 71 Ys~~k~~~~~~~ 82 (107)
|+|.|.|+..++
T Consensus 242 i~YikVrrm~~~ 253 (262)
T KOG4812|consen 242 INYIKVRRMEEK 253 (262)
T ss_pred HhHHHHhhHHHH
Confidence 455555554443
No 60
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=84.43 E-value=0.53 Score=37.69 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=45.7
Q ss_pred hhhHHHHHH---HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 3 MILSCSIAV---GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 3 lllsg~laf---~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
+++=|++++ +..+-+++-+....|+ |.--.--+++++++|++.+ |+.|..+..|..+++.|+++-..
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~---vItFssPvft~ifaw~~Lk-E~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAV---VITFSSPVFTIIFAWAFLK-EPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheE---EEEecChHHHHHHHHHHHc-CCCcHHHHHHHHHhhheEEEEec
Confidence 344444444 4444444444444443 3334456788999999998 79999999999999999976543
No 61
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=84.28 E-value=1.4 Score=34.20 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=24.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581 53 LNMQVILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 53 ~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
-.+.+++|+++.++|..+|...|..+++.
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~~~ 142 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEEKEP 142 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCCCCc
Confidence 45789999999999999999988877443
No 62
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=78.36 E-value=7.3 Score=30.93 Aligned_cols=63 Identities=25% Similarity=0.369 Sum_probs=53.4
Q ss_pred HHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCc
Q 045581 17 QFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 17 ~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
+.....+.++=+|++.=.+.-.+-.+.|+++.| |..|+.|+.|+...+.++..-+..-+++.+
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~-e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~ 289 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLG-ETLTLIQWLAIAAVIAASAGSTLTARKPAV 289 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence 456678889999999999999999999999998 789999999999999998776665555443
No 63
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=76.81 E-value=2 Score=29.62 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=43.3
Q ss_pred HHHHHHHHH---HHHHhccC--hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHH
Q 045581 9 IAVGTNLSQ---FICIGRFT--AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMI 69 (107)
Q Consensus 9 laf~lN~s~---f~~i~~tS--alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~ 69 (107)
..|++|.+. |+..-... +++.-+++.+--+++.+.|+++.+ +..+...++|+.+.+.|+.
T Consensus 46 ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge-~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 46 IPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGE-EVISRRTWLGMALILAGVA 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcC-cccchhHHHHHHHHHcCee
Confidence 466777765 22222223 345556778888899999988886 5788899999999999975
No 64
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.79 E-value=21 Score=25.75 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=50.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHh----hhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 1 FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLV----LGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 1 ~~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~----~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
|+-.+.|+++-++=.++-....+..+.+..++...-..+.-+ .||.-....++++..+.|+++.++|.++-+.
T Consensus 70 wW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 70 WWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 455678888888888888888888777776665544333322 2333333358999999999999999655443
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=64.11 E-value=34 Score=27.74 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=34.3
Q ss_pred hhhhhhhhhhhHHHHhhhhhccCCcccc--------hhhHHHHHHHHHHHHHHhhhccCCCc
Q 045581 27 VTFQVLGHMKTILVLVLGFIFFGKEGLN--------MQVILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 27 lT~sV~G~vK~v~~i~~g~~~fg~~~~t--------~~~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
+++.+.-=+--+.-++.+.++|| | ++ ....+|+++.++|.++=+++-.++.+
T Consensus 101 ~~~pIs~Gl~lv~gtL~~~i~~g-e-w~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~ 160 (345)
T PRK13499 101 LGIGIAIGITLIVGTLMPPIING-N-FDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKER 160 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcc-c-cccccccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 34444444444555677778887 3 33 45788999999999998886554443
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=63.47 E-value=16 Score=30.44 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCC
Q 045581 6 SCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKP 78 (107)
Q Consensus 6 sg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~ 78 (107)
+++--++--+.=.+....||||+-++.=.+ .+....++-++++..+.|+..++|-...++|.+.=++.....
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSl-tIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSL-TIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeE-eeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 344444445556677888999999887777 455555555556336899999999999999999888865543
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=61.31 E-value=12 Score=29.33 Aligned_cols=56 Identities=27% Similarity=0.441 Sum_probs=42.2
Q ss_pred HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581 16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG 72 (107)
Q Consensus 16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys 72 (107)
.+|...+...+...+=.|.+--+...+++..+.+ |+++...+.|..+++.|..+--
T Consensus 66 ~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~-e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 66 LNFVALGFAPASLVAPLGALSLVFNAVLARFFLG-EKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhc-ccchHhHHhhHHHHHhhheeeE
Confidence 3344444444444555677777788899999998 7999999999999999997654
No 68
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=58.74 E-value=13 Score=29.72 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=43.9
Q ss_pred HHHHHHHHHH-HhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 11 VGTNLSQFIC-IGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 11 f~lN~s~f~~-i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
...|...|.= +..-..+--+.-=-++-.+.+++|.++++ |+++..|++-+.++.+|+..=.+
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflk-Erls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLK-ERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHH
Confidence 4455555532 23334444444445677888999999998 78999999999999999876444
No 69
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=57.81 E-value=10 Score=22.08 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhccCCCcccccc
Q 045581 60 GMVIAVLGMIWYGNASSKPGGKERRS 85 (107)
Q Consensus 60 G~~l~~~G~~~Ys~~k~~~~~~~~~~ 85 (107)
-..+.++|+++|.+.+.++++-++++
T Consensus 18 ~~~~~Figiv~wa~~p~~k~~f~eaa 43 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKKAFDEAA 43 (48)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 34688999999999977665544443
No 70
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.54 E-value=19 Score=28.28 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhccCCCccccccc--CCCcccCCCCCC
Q 045581 62 VIAVLGMIWYGNASSKPGGKERRSL--SLPKSQKQSVPE 98 (107)
Q Consensus 62 ~l~~~G~~~Ys~~k~~~~~~~~~~~--~~~~~~~~~~~~ 98 (107)
++.++|.+++-..|++++...++.. -+...-.+|+||
T Consensus 243 ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~~~~~~vpP 281 (281)
T PF12768_consen 243 LLVLIGIILAYIRRRRQGYVPAPTSPRIDEDEMMQRVPP 281 (281)
T ss_pred HHHHHHHHHHHHHhhhccCcCCCcccccCcccccccCCC
Confidence 3667788888777776665555443 334444468887
No 71
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=51.05 E-value=26 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCc
Q 045581 56 QVILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 56 ~~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
.-.+|+.+++.|.++|.....+...
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 3467999999999999987665443
No 72
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=50.43 E-value=10 Score=29.42 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=49.0
Q ss_pred HHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581 14 NLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 14 N~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
|+--....++.||.--+-.-.-+..++-+++|++.|| .+....++...+++.|..+-+|.
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D-~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGD-RFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhcc-chhhhhHHHHHHHhCcEEEEEec
Confidence 4444566778888877777778888999999999996 79989999999999998877654
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=48.98 E-value=72 Score=25.06 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchh----hHHHHHHHHHHHHH
Q 045581 5 LSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQ----VILGMVIAVLGMIW 70 (107)
Q Consensus 5 lsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~----~~~G~~l~~~G~~~ 70 (107)
++|++=-.=|++-+.-..+...-+-=..+.+--++..+.|+++++ |+-+.+ -.+|..+.+.|.++
T Consensus 200 l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~-E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 200 LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILK-EKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEE-ecCchhhHHHHHHHHHHHHHhhhc
Confidence 455555555666666666666656566677778899999999998 566655 45677777777653
No 74
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=47.66 E-value=24 Score=23.13 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581 53 LNMQVILGMVIAVLGMIWYGNASSKPG 79 (107)
Q Consensus 53 ~t~~~~~G~~l~~~G~~~Ys~~k~~~~ 79 (107)
.++..++|+.+.++|..+|..++.+++
T Consensus 5 ~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 5 FGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 678899999999999999987666554
No 75
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=46.08 E-value=19 Score=20.57 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccc
Q 045581 59 LGMVIAVLGMIWYGNASSKPGGKER 83 (107)
Q Consensus 59 ~G~~l~~~G~~~Ys~~k~~~~~~~~ 83 (107)
+-..+.+.|.++|.+.+.++++-++
T Consensus 16 v~~~~~F~gi~~w~~~~~~k~~~e~ 40 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRNKKRFEE 40 (49)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHH
Confidence 3445778899999997765443333
No 76
>PF14981 FAM165: FAM165 family
Probab=44.89 E-value=4.4 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccc
Q 045581 59 LGMVIAVLGMIWYGNASSKPGGKER 83 (107)
Q Consensus 59 ~G~~l~~~G~~~Ys~~k~~~~~~~~ 83 (107)
+=+.++++|+=+|+..+..++.++.
T Consensus 18 lilClaFAgvK~yQ~krlEak~~k~ 42 (51)
T PF14981_consen 18 LILCLAFAGVKMYQRKRLEAKLKKL 42 (51)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3466889999999988776655543
No 77
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=42.23 E-value=63 Score=22.18 Aligned_cols=33 Identities=21% Similarity=0.692 Sum_probs=23.6
Q ss_pred hhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 045581 36 KTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIW 70 (107)
Q Consensus 36 K~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~ 70 (107)
|.++.+.+|.+.++ . -....+.|..+.+.|.+.
T Consensus 70 RGlfyif~G~l~~~-~-~~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 70 RGLFYIFLGTLCLG-Q-SILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHH
Confidence 67778888888887 3 344567788877777653
No 78
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=42.14 E-value=74 Score=27.31 Aligned_cols=70 Identities=10% Similarity=0.234 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhccC----hhhhhhhhhhhhHHHHhhhhhccCCcc----cc--hhhHHHHHHHHHHHHHH
Q 045581 2 FMILSCSIAVGTNLSQFICIGRFT----AVTFQVLGHMKTILVLVLGFIFFGKEG----LN--MQVILGMVIAVLGMIWY 71 (107)
Q Consensus 2 ~lllsg~laf~lN~s~f~~i~~tS----alT~sV~G~vK~v~~i~~g~~~fg~~~----~t--~~~~~G~~l~~~G~~~Y 71 (107)
+++..++..|++.+.++-+-+..| +|.+.+-.-+--+++.++-.++.++.. +. ..-+.|+.+.++..++.
T Consensus 360 yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~ 439 (511)
T TIGR00806 360 YVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSVYFLVLSIICFF 439 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhhHHHHHHHHHHH
Confidence 467888999999999999998888 788887777777788888877765311 11 22344555555544433
No 79
>PHA03049 IMV membrane protein; Provisional
Probab=41.98 E-value=40 Score=21.28 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCc
Q 045581 56 QVILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 56 ~~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
.-.+++.+++.|.++|...+.+...
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 3467899999999999987665433
No 80
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=41.57 E-value=61 Score=26.42 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=42.4
Q ss_pred HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581 16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~ 73 (107)
--|.-...|||-.+++.-=.--+++-+.+..+.+ ..++..++.|+.....|...-..
T Consensus 102 lm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln-~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 102 LMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLN-RTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHh-cccchhhHHHHHHHHhhhheeee
Confidence 3344556788888887644445666677788888 57999999999999999875433
No 81
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=40.11 E-value=55 Score=24.81 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=40.4
Q ss_pred HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHH
Q 045581 16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVI 63 (107)
Q Consensus 16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l 63 (107)
..-+++++.+.+.-..+..+--++..++++++|| .++|..-.+|..+
T Consensus 197 lva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~-~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 197 LVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFG-FPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHhhheec
Confidence 3445889999999999999999999999999998 6899988888653
No 82
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=40.01 E-value=29 Score=21.93 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=20.4
Q ss_pred cchhhHHH-HHHHHHHHHHHhhhccCCCccccc
Q 045581 53 LNMQVILG-MVIAVLGMIWYGNASSKPGGKERR 84 (107)
Q Consensus 53 ~t~~~~~G-~~l~~~G~~~Ys~~k~~~~~~~~~ 84 (107)
+....++| +++++++.+.--|.|.++.+++++
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhh
Confidence 33334444 667777777777777777666554
No 83
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=40.01 E-value=46 Score=17.10 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=9.1
Q ss_pred ccchhhHHHHHHHHHH
Q 045581 52 GLNMQVILGMVIAVLG 67 (107)
Q Consensus 52 ~~t~~~~~G~~l~~~G 67 (107)
.-++..++|+++..++
T Consensus 9 ~~~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 9 GNSLLLLLGLLLLGLG 24 (34)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3456677787444443
No 84
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=38.69 E-value=1.7e+02 Score=23.01 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=28.3
Q ss_pred hhhHHHHhhhhhccCCcccchh----hHHHHHHHHHHHHHHhhhccCCCc
Q 045581 35 MKTILVLVLGFIFFGKEGLNMQ----VILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 35 vK~v~~i~~g~~~fg~~~~t~~----~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
+-=+...+.|+++|| |--+.. ...++++.+.|.++=++...++.+
T Consensus 81 ~QLvg~sl~gv~~fg-EW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 81 LQLVGTSLIGVLFFG-EWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHHHhhcC-CCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 334556789999998 523322 345667888888776665544443
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.23 E-value=15 Score=25.59 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=5.8
Q ss_pred HHHHhhhccCCCc
Q 045581 68 MIWYGNASSKPGG 80 (107)
Q Consensus 68 ~~~Ys~~k~~~~~ 80 (107)
.++|-..|++++.
T Consensus 83 li~y~irR~~Kk~ 95 (122)
T PF01102_consen 83 LISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHS---
T ss_pred HHHHHHHHHhccC
Confidence 4556665555543
No 86
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=37.10 E-value=11 Score=29.89 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCC
Q 045581 53 LNMQVILGMVIAVLGMIWYGNASSKP 78 (107)
Q Consensus 53 ~t~~~~~G~~l~~~G~~~Ys~~k~~~ 78 (107)
+..-.++.++++++|..+|.+.++..
T Consensus 230 lLVPSiILVLLaVGGLLfYr~rrRs~ 255 (285)
T PF05337_consen 230 LLVPSIILVLLAVGGLLFYRRRRRSH 255 (285)
T ss_dssp --------------------------
T ss_pred ccccchhhhhhhccceeeeccccccc
Confidence 34457889999999999998876543
No 87
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=36.95 E-value=88 Score=25.41 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCC
Q 045581 11 VGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKP 78 (107)
Q Consensus 11 f~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~ 78 (107)
..-..+.|-.+++.|=-|+.++=.-|-+.+.+.|.++++ .+.++..++-..+.-+|+..+...+..+
T Consensus 94 ~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~-~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 94 TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYG-RKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhc-CccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 334456778889999999999999999999999999998 5899999999999999999998876555
No 88
>PF15102 TMEM154: TMEM154 protein family
Probab=32.07 E-value=42 Score=24.20 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCC
Q 045581 58 ILGMVIAVLGMIWYGNASSKPG 79 (107)
Q Consensus 58 ~~G~~l~~~G~~~Ys~~k~~~~ 79 (107)
+++.++.+..++++.+.|+++.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 5566666777787777755544
No 89
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.89 E-value=66 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=18.9
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcc
Q 045581 53 LNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 53 ~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
+|..|++++.+.+.|..++-+.+.
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~~ 258 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRRK 258 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 688899999999999877655443
No 90
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=29.82 E-value=13 Score=20.21 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhccCCCcc
Q 045581 61 MVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 61 ~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
+++++.|..+|.+-|.++...
T Consensus 6 i~L~l~ga~f~~fKKyQ~~vn 26 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNHVN 26 (33)
T ss_pred ehhhhhhHHHHHHHHHHHHHh
Confidence 458889999999988876443
No 91
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=1.7e+02 Score=23.96 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCC-cccchh----hHHHHHHHHHHHHHHhhhccCCCc
Q 045581 6 SCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGK-EGLNMQ----VILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 6 sg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~-~~~t~~----~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
-.+..+-+|+-+=.+=-..+++...|--.+=..+.|..|.++|.| +..+.. ...|....+.|+++-...|..+.+
T Consensus 234 ~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~ 313 (335)
T KOG2922|consen 234 ATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEIS 313 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccccc
Confidence 334444455555444455566777777777788899999999974 233433 455777888888877554444433
No 92
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.01 E-value=20 Score=26.51 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcccccccC
Q 045581 40 VLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKERRSLS 87 (107)
Q Consensus 40 ~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~~~~~~ 87 (107)
++++|-+++. ++.|.-+.+.+..-+|.++|-+.+.-.+.||+.=+.
T Consensus 33 ~liv~gvv~r--tvGWrvIa~~~~~Yg~lYlYERLtWT~~AKER~fK~ 78 (171)
T PF04799_consen 33 VLIVGGVVWR--TVGWRVIAVSGSLYGGLYLYERLTWTNKAKERAFKR 78 (171)
T ss_dssp ------------------------------------------------
T ss_pred hhhhhhHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3455556674 699999999999999999999888877777765443
No 93
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=44 Score=20.53 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCccccc
Q 045581 57 VILGMVIAVLGMIWYGNASSKPGGKERR 84 (107)
Q Consensus 57 ~~~G~~l~~~G~~~Ys~~k~~~~~~~~~ 84 (107)
..+=+.+++.|+++|.+.+.++.+-.++
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~K~~~d~a 41 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGKKGEFDEA 41 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 3445668889999999977765544333
No 94
>PRK02237 hypothetical protein; Provisional
Probab=26.97 E-value=1.4e+02 Score=20.50 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=32.1
Q ss_pred hhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 045581 28 TFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIW 70 (107)
Q Consensus 28 T~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~ 70 (107)
+|+.-|=+=-+..++-++.+-| .+.+....+|..+++.|+..
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg-~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDG-VRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-cCCChhHHHhHHHHHHhHHH
Confidence 4555565555566666777777 68999999999999999854
No 95
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=25.87 E-value=1.5e+02 Score=20.30 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=31.8
Q ss_pred hhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 045581 28 TFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIW 70 (107)
Q Consensus 28 T~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~ 70 (107)
+|+.-|=+=-+..++=++.+-| .+.+....+|..+++.|...
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg-~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDG-VRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcC-cCCChHHHHhHHHHHHhHHh
Confidence 3555555555666666777777 68999999999999999865
No 96
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=24.77 E-value=6.1 Score=31.63 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=44.8
Q ss_pred HhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhc
Q 045581 21 IGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNAS 75 (107)
Q Consensus 21 i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k 75 (107)
-++||-++-+..-.--..++.+++|++.+ .+--+.++.|..+|++|+.+--.+-
T Consensus 99 yQyTsmtSi~lLDcwaip~v~~lsw~fLk-trYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 99 YQYTSMTSIMLLDCWAIPCVLVLSWFFLK-TRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred hhhcchHHHHHHHHhhhHHHHHHHHHHHH-HHHhhheeeeEEeEecceEEEEEee
Confidence 45677777788888888899999999998 6788999999999999997765543
No 97
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=24.61 E-value=2.1e+02 Score=24.45 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHH
Q 045581 4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVL 66 (107)
Q Consensus 4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~ 66 (107)
+..|++|+.+-..-..+-++ -+-..+....+=..+.++...-++| -.+|.-.+.|+.++++
T Consensus 346 i~Agl~g~~~V~vfm~~~Yr-~~Gvia~ial~~n~~lil~vls~lg-atLtLpgIAGiILtIG 406 (506)
T COG0342 346 LIAGLIGLALVAVFMLLYYR-LAGVIAAIALGLNGVLILAVLSLLG-ATLTLPGIAGIILTIG 406 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhHHHHhhh
Confidence 34566666655444444444 3333333333336666777777777 5899999999988764
No 98
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=24.31 E-value=93 Score=19.71 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=23.5
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581 44 GFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG 79 (107)
Q Consensus 44 g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~ 79 (107)
.+-+||+..-+=.-.+|.+-+++|+++|.....+..
T Consensus 4 ~Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~~~g~k~~ 39 (71)
T PF11022_consen 4 AYTIFGRQVQSHYLAIATLGTVFGGVYLATSGSKKP 39 (71)
T ss_pred eeeecccccccchhHHHHHHHHHHHheeccCCCCCC
Confidence 345677644444566788888888888876655433
No 99
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=23.71 E-value=44 Score=27.02 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHH--HHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581 3 MILSCSIAVGTNLSQFI--CIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 3 lllsg~laf~lN~s~f~--~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
++.=|+++|.-.+.--+ .+.+..|.. +.-...-+...+--+++|+ |-.|+..+.|.++.+....+-...|.
T Consensus 256 ~~~lGvfgfigQIllTm~lQiErAGpva--im~~~dvvfAf~wqv~ff~-~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 256 FVNLGVFGFIGQILLTMGLQIERAGPVA--IMTYTDVVFAFFWQVLFFG-HWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred EEEehhhhhHHHHHHHHHhhhhccCCee--hhhHHHHHHHHHHHHHHhc-CCChHHHhhceeeeehhHHHHHHHHH
Confidence 34446666655544433 344555543 3344445556666677898 78999999999887766666554443
No 100
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.54 E-value=1.1e+02 Score=25.91 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=19.5
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcc
Q 045581 53 LNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 53 ~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
++..|++.+.+.++|.+++-+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 678899999999999887766554
No 101
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.14 E-value=1.3e+02 Score=19.96 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=15.2
Q ss_pred HhhhhhccCCcccchhhHHHHHH
Q 045581 41 LVLGFIFFGKEGLNMQVILGMVI 63 (107)
Q Consensus 41 i~~g~~~fg~~~~t~~~~~G~~l 63 (107)
|.+|-+.-++||+|++-++|-.+
T Consensus 18 Ialgk~L~s~Epit~RL~iGR~i 40 (89)
T PF04550_consen 18 IALGKVLASNEPITLRLFIGRVI 40 (89)
T ss_pred HHHHHHHccCCCCchhHHhHHHH
Confidence 56666666667888876666543
No 102
>KOG4320 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=41 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=18.3
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhh
Q 045581 50 KEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 50 ~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
+..+.....+|..+++.++.+|.+.
T Consensus 112 et~i~~VH~~ga~laF~~g~LY~~~ 136 (253)
T KOG4320|consen 112 ETAIRIVHDIGAVLAFGAGLLYMWF 136 (253)
T ss_pred cccchhhhhhhhhHHhcchHHHHHH
Confidence 3456666778888888888888765
No 103
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=22.31 E-value=85 Score=21.55 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=20.3
Q ss_pred HhhhhhccCCcccchhhHHHHHHHHHHH
Q 045581 41 LVLGFIFFGKEGLNMQVILGMVIAVLGM 68 (107)
Q Consensus 41 i~~g~~~fg~~~~t~~~~~G~~l~~~G~ 68 (107)
+..++++.+ |++++....|....++++
T Consensus 77 ~~Fsv~~l~-E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 77 APFSVFYLG-EPLKWNYLWAFLCILGAV 103 (108)
T ss_pred HHHHHHHhC-CCccHHHHHHHHHHHHhh
Confidence 345677787 799999998887765554
No 104
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=22.08 E-value=22 Score=21.33 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=19.9
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhcc
Q 045581 52 GLNMQVILGMVIAVLGMIWYGNASS 76 (107)
Q Consensus 52 ~~t~~~~~G~~l~~~G~~~Ys~~k~ 76 (107)
..+...++|..+...|.+.|+....
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~ 39 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSY 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888898888888888877654
No 105
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=21.61 E-value=1.4e+02 Score=16.79 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCcc
Q 045581 57 VILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 57 ~~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
-.+|+++...-.++|.....|.+++
T Consensus 12 V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 12 VVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccc
Confidence 3568888888888998876665533
No 106
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=21.30 E-value=2.7e+02 Score=21.78 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=27.8
Q ss_pred hHHHHhhhhhccCC-cccchh----hHHHHHHHHHHHHHHhhhccCC
Q 045581 37 TILVLVLGFIFFGK-EGLNMQ----VILGMVIAVLGMIWYGNASSKP 78 (107)
Q Consensus 37 ~v~~i~~g~~~fg~-~~~t~~----~~~G~~l~~~G~~~Ys~~k~~~ 78 (107)
....++.|.++|+| +..++. -..|..+.+.|+++=+..|..+
T Consensus 251 t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~ 297 (300)
T PF05653_consen 251 TLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKE 297 (300)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchh
Confidence 45678889999974 245553 4567778888887766554433
No 107
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=2.9e+02 Score=19.13 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=28.6
Q ss_pred HHHhhhhhc---cCCcccchhhHHHHHHHHHHHHHHhhhccCCCcccccccCCCcccC
Q 045581 39 LVLVLGFIF---FGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKERRSLSLPKSQK 93 (107)
Q Consensus 39 ~~i~~g~~~---fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~~~~~~~~~~~~ 93 (107)
+-..+||+. +| .-.|-.++++++.+ |.-..+..|.....+++.+.+.+..++
T Consensus 58 VGa~iG~llD~~ag--TsPwglIv~lllGf-~AG~lnv~Rsag~va~~~~~~~~s~~~ 112 (116)
T COG5336 58 VGAGIGWLLDKFAG--TSPWGLIVFLLLGF-GAGVLNVLRSAGKVAEQGQAPKSSGND 112 (116)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHH-HHHHHHHHHHhccccccccCCCCCccc
Confidence 445566664 44 23344444444444 444556666767777777766655543
No 108
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=21.13 E-value=1e+02 Score=19.07 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccC
Q 045581 27 VTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSK 77 (107)
Q Consensus 27 lT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~ 77 (107)
....+.+.+..++-+.-|++.-+ .++-..+.+|..+...=...|-....+
T Consensus 36 ~~~~~~~~~~~~~W~~YG~l~~d-~~i~~~N~~g~~~~~~~~~~~~~y~~~ 85 (87)
T PF03083_consen 36 FPPFLAMFFNCVLWLIYGILIND-WPIIVPNVFGLVLSIIYLVVYYIYPSK 85 (87)
T ss_pred eehhHHHhhhccHhhhhhhhcCC-eeEEeeHHHHHHHHHHHHhheEEeCCC
Confidence 44556777888888888888865 578888999998887777666554443
No 109
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=20.91 E-value=3.4e+02 Score=20.51 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 045581 57 VILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 57 ~~~G~~l~~~G~~~Ys~~ 74 (107)
+..|..+.+.+.+.|...
T Consensus 146 ~~~G~ll~l~aa~~~a~~ 163 (293)
T PRK10532 146 DLTGAALALGAGACWAIY 163 (293)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 345777777777666654
No 110
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=20.79 E-value=69 Score=18.76 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccc
Q 045581 59 LGMVIAVLGMIWYGNASSKPGGKER 83 (107)
Q Consensus 59 ~G~~l~~~G~~~Ys~~k~~~~~~~~ 83 (107)
-|..+.=+|.++|..+|.+.++-++
T Consensus 9 SG~GLig~G~Yv~~~ark~~k~~~~ 33 (47)
T PF15055_consen 9 SGGGLIGAGAYVYAQARKRMKPGGP 33 (47)
T ss_pred cccchHHHHHHHHHHHhhcccCCCC
Confidence 3555666788889888877655443
No 111
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.05 E-value=2.4e+02 Score=20.22 Aligned_cols=32 Identities=13% Similarity=0.614 Sum_probs=25.0
Q ss_pred hHHHHhhhhhccCCcccchhhHHHHHHHHHHHH
Q 045581 37 TILVLVLGFIFFGKEGLNMQVILGMVIAVLGMI 69 (107)
Q Consensus 37 ~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~ 69 (107)
..+.+..|+.+-+ ...+....+|..+++.|.+
T Consensus 76 s~vLil~g~~la~-t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 76 SFVLILAGVFLAA-TDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHH
Confidence 4566677777766 4678889999999988887
Done!