Query 045581
Match_columns 107
No_of_seqs 115 out of 1042
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.3 0.00072 2.5E-08 46.7 6.6 67 7-74 36-104 (137)
2 3b5d_A Multidrug transporter E 96.7 0.011 3.8E-07 38.8 8.0 67 7-74 36-104 (110)
3 3l1l_A Arginine/agmatine antip 36.6 1.3E+02 0.0044 22.4 7.8 27 56-82 409-435 (445)
4 2l2t_A Receptor tyrosine-prote 25.7 90 0.0031 17.1 3.3 7 67-73 28-34 (44)
5 4h33_A LMO2059 protein; bilaye 11.8 3.2E+02 0.011 17.5 4.7 32 43-74 55-88 (137)
6 1l2w_I Outer membrane virulenc 10.3 52 0.0018 19.3 -0.2 20 20-39 43-62 (69)
7 1rh1_A Colicin B; FEPA, cytoto 9.8 3.3E+02 0.011 22.3 4.2 51 12-68 444-495 (511)
8 3few_X Colicin S4; cell lysis, 9.8 5.2E+02 0.018 21.0 5.3 41 22-68 439-480 (505)
9 1rh5_B Preprotein translocase 9.2 2.2E+02 0.0075 17.1 2.4 18 56-73 38-55 (74)
10 2jwa_A Receptor tyrosine-prote 8.7 2.9E+02 0.01 15.0 2.9 24 58-81 21-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.29 E-value=0.00072 Score=46.71 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhccChh--hhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581 7 CSIAVGTNLSQFICIGRFTAV--TFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 7 g~laf~lN~s~f~~i~~tSal--T~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
+++++.+.+..+...-+.-|+ .+.+...+--++.+++|+++|| |++|+.+++|+.+.++|+++-+..
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lg-E~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444433333343 4455356778899999999998 799999999999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.69 E-value=0.011 Score=38.81 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhccChhh--hhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581 7 CSIAVGTNLSQFICIGRFTAVT--FQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 7 g~laf~lN~s~f~~i~~tSalT--~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
+++++.+.+..+...-+.-|++ |.+...+--+.+.++|+++|| |++|+.+++|+.+.+.|++.-+..
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~-E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444444444444444 455456678889999999998 799999999999999999988764
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=36.64 E-value=1.3e+02 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCccc
Q 045581 56 QVILGMVIAVLGMIWYGNASSKPGGKE 82 (107)
Q Consensus 56 ~~~~G~~l~~~G~~~Ys~~k~~~~~~~ 82 (107)
....|..+.+.|..+|-+.+++.++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 356688899999999998776654433
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.70 E-value=90 Score=17.13 Aligned_cols=7 Identities=0% Similarity=-0.705 Sum_probs=2.5
Q ss_pred HHHHHhh
Q 045581 67 GMIWYGN 73 (107)
Q Consensus 67 G~~~Ys~ 73 (107)
+..+|=+
T Consensus 28 ~~~~~~~ 34 (44)
T 2l2t_A 28 LTFAVYV 34 (44)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333333
No 5
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=11.76 E-value=3.2e+02 Score=17.50 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=20.4
Q ss_pred hhhhccCC-cccchh-hHHHHHHHHHHHHHHhhh
Q 045581 43 LGFIFFGK-EGLNMQ-VILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 43 ~g~~~fg~-~~~t~~-~~~G~~l~~~G~~~Ys~~ 74 (107)
+.-+=||| .|.|.. .++.+...+.|..++++.
T Consensus 55 ~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~ 88 (137)
T 4h33_A 55 ATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMI 88 (137)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 34455776 244433 677778888888777664
No 6
>1l2w_I Outer membrane virulence protein YOPE; chaperone and virulence protein; 2.00A {Yersinia pseudotuberculosis} SCOP: d.198.1.1
Probab=10.31 E-value=52 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=14.8
Q ss_pred HHhccChhhhhhhhhhhhHH
Q 045581 20 CIGRFTAVTFQVLGHMKTIL 39 (107)
Q Consensus 20 ~i~~tSalT~sV~G~vK~v~ 39 (107)
+|.+.|++.++|+|.+.+.+
T Consensus 43 iierlssvahsvigfiqrmf 62 (69)
T 1l2w_I 43 IIERLSSVAHSVIGFIQRMF 62 (69)
T ss_dssp CEEECSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677888899988876643
No 7
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=9.81 E-value=3.3e+02 Score=22.32 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHH-HHHH
Q 045581 12 GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIA-VLGM 68 (107)
Q Consensus 12 ~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~-~~G~ 68 (107)
++-+=+..+-+..|+++..+...+ +......|| -+.|...++|++++ ++|.
T Consensus 444 fvklES~a~sg~ASaVa~~~FS~i-----lGs~l~~~G-~~~t~lGiiGIii~avVgA 495 (511)
T 1rh1_A 444 MLEVESWVISGMASAVALSLFSLT-----LGSALIAFG-LSATVVGFVGVVIAGAIGA 495 (511)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH-----HHHHHTTCC-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH-----hcchhhhcc-ccchhhHHHHHHHHHHHHH
Confidence 333334444455555555443332 111223466 57888888888543 4443
No 8
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=9.75 E-value=5.2e+02 Score=20.98 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=21.2
Q ss_pred hccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHH-HHHHHHH
Q 045581 22 GRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM-VIAVLGM 68 (107)
Q Consensus 22 ~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~-~l~~~G~ 68 (107)
+..++++..++... ...++.. .+ -|.+...++|+ +++++|.
T Consensus 439 GvAaaVALgifs~t----l~AfSli-lG-~P~taIGIaGiILmAvVgA 480 (505)
T 3few_X 439 GIASAVALGVFSAT----LGAYALS-LG-APAIAVGIVGILLAAVVGA 480 (505)
T ss_dssp TCCHHHHHHHHHHH----HHHHHHH-CC-SCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----HHHHHHH-hc-CchhHHHHHHHHHHHHHHH
Confidence 55555554443222 1222333 55 47888889885 3444444
No 9
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.21 E-value=2.2e+02 Score=17.14 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 045581 56 QVILGMVIAVLGMIWYGN 73 (107)
Q Consensus 56 ~~~~G~~l~~~G~~~Ys~ 73 (107)
....|+.+.++|.+.|-.
T Consensus 38 ak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 38 AKVTALGISLLGIIGYII 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777777777654
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.72 E-value=2.9e+02 Score=14.99 Aligned_cols=24 Identities=17% Similarity=-0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcc
Q 045581 58 ILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 58 ~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
++-..+..++.++|-..|+++++|
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHhheehhhhhccC
Done!