Query 045581
Match_columns 107
No_of_seqs 115 out of 1042
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 05:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045581.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045581hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 53.0 6.7 0.00049 18.2 2.6 20 58-77 2-21 (27)
2 d1n1ea1 a.100.1.6 (A:198-357) 26.0 17 0.0012 23.0 2.1 24 24-47 1-24 (160)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 13.7 68 0.005 18.4 2.8 27 55-81 33-59 (100)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 11.5 34 0.0024 19.6 0.7 22 61-82 28-49 (91)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.3 1E+02 0.0074 17.8 3.1 27 54-80 38-64 (107)
6 d1txga1 a.100.1.6 (A:181-335) 11.2 59 0.0043 20.2 2.0 21 27-47 3-23 (155)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 11.0 2.3E+02 0.016 20.1 5.6 56 18-75 232-287 (472)
8 d1l2wi_ d.198.1.1 (I:) YopE ch 10.9 22 0.0016 18.9 -0.2 18 21-38 39-56 (57)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 9.2 83 0.0061 15.1 1.6 16 58-73 10-26 (34)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 7.5 1.6E+02 0.011 18.5 3.1 45 29-74 68-112 (199)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=52.97 E-value=6.7 Score=18.24 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 045581 58 ILGMVIAVLGMIWYGNASSK 77 (107)
Q Consensus 58 ~~G~~l~~~G~~~Ys~~k~~ 77 (107)
+.|+.+...|..+|...+..
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 46888877777777765543
No 2
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=26.02 E-value=17 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.0
Q ss_pred cChhhhhhhhhhhhHHHHhhhhhc
Q 045581 24 FTAVTFQVLGHMKTILVLVLGFIF 47 (107)
Q Consensus 24 tSalT~sV~G~vK~v~~i~~g~~~ 47 (107)
|.....-++|.+|++..+..|++-
T Consensus 1 tD~~GvE~~galKNi~Aia~Gi~~ 24 (160)
T d1n1ea1 1 TDTVGCEVASAVKNVLAIGSGVAN 24 (160)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999875
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.72 E-value=68 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581 55 MQVILGMVIAVLGMIWYGNASSKPGGK 81 (107)
Q Consensus 55 ~~~~~G~~l~~~G~~~Ys~~k~~~~~~ 81 (107)
..-..++.+.+.|...|...|.|.++.
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 334556677788888888888776543
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.52 E-value=34 Score=19.64 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhccCCCccc
Q 045581 61 MVIAVLGMIWYGNASSKPGGKE 82 (107)
Q Consensus 61 ~~l~~~G~~~Ys~~k~~~~~~~ 82 (107)
+.+.+.|...|...|.|+++.+
T Consensus 28 v~v~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHHHHhhheeeeccCCc
Confidence 3456778888999888876544
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.34 E-value=1e+02 Score=17.83 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhccCCCc
Q 045581 54 NMQVILGMVIAVLGMIWYGNASSKPGG 80 (107)
Q Consensus 54 t~~~~~G~~l~~~G~~~Ys~~k~~~~~ 80 (107)
...-+.++.+.+.|...|...|.|+++
T Consensus 38 v~~i~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 38 VLYIITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 334455666777888888888876553
No 6
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.16 E-value=59 Score=20.21 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhHHHHhhhhhc
Q 045581 27 VTFQVLGHMKTILVLVLGFIF 47 (107)
Q Consensus 27 lT~sV~G~vK~v~~i~~g~~~ 47 (107)
+...++|.+|++..+.+|++-
T Consensus 3 iGvEi~galKNi~Aia~Gi~~ 23 (155)
T d1txga1 3 IGTEITSALKNVYSIAIAWIR 23 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999974
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.01 E-value=2.3e+02 Score=20.08 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhc
Q 045581 18 FICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNAS 75 (107)
Q Consensus 18 f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k 75 (107)
|.|+.++ +.+.+..++=.+..++++.++....|+++.+++-+-+.+-+..-.+...
T Consensus 232 ~~~~~k~--i~~~l~~n~~~v~~~~~~~~l~~p~pl~~~qILwinli~d~lpaiaL~~ 287 (472)
T d1wpga4 232 YNNMKQF--IRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGF 287 (472)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHSCCCCSCCHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHhHHh--hhhhhhhhHHHHHHHHHHHHcCCCccccHHHHHHHHHHhHHHHHHHHhc
Confidence 3444443 4556666777778888888887767999999988877665554444433
No 8
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=10.94 E-value=22 Score=18.92 Aligned_cols=18 Identities=28% Similarity=0.659 Sum_probs=14.1
Q ss_pred HhccChhhhhhhhhhhhH
Q 045581 21 IGRFTAVTFQVLGHMKTI 38 (107)
Q Consensus 21 i~~tSalT~sV~G~vK~v 38 (107)
+.+.|++.++++|.+|+.
T Consensus 39 ~e~lss~ahs~i~fi~rm 56 (57)
T d1l2wi_ 39 IERLSSVAHSVIGFIQRM 56 (57)
T ss_dssp EEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788889998888864
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.23 E-value=83 Score=15.11 Aligned_cols=16 Identities=38% Similarity=0.970 Sum_probs=10.8
Q ss_pred HHHHH-HHHHHHHHHhh
Q 045581 58 ILGMV-IAVLGMIWYGN 73 (107)
Q Consensus 58 ~~G~~-l~~~G~~~Ys~ 73 (107)
+.|+. +.+.|.++|.-
T Consensus 10 v~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 10 VAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHhheeeeeeee
Confidence 34443 77889998864
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.52 E-value=1.6e+02 Score=18.51 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=29.5
Q ss_pred hhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581 29 FQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA 74 (107)
Q Consensus 29 ~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~ 74 (107)
.......=.+........++| .+++.....+..+.++.+.-|+..
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g-~~l~~~s~~~~~i~igi~vd~~i~ 112 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFG-FSINTLTMFGMVLAIGLLVDDAIV 112 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCC-CchHHHHHHHHHHHHHHhcccHHH
Confidence 333444444555556666777 689998888888888777665433
Done!