BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045583
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTE 73
+GPW+ EED + V+ +GT W L K R GK CR RW N+L P++K ++TE
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTK-QW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 74 DEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
+ED +I + +G+RW+ IA LPGRTDN VKN+WN+ +K+K+
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 95.1 bits (235), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
+GPW+ EED + + V+ +G W + + LK R GK CR RW N+L P++K ++T
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 73 EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
E+ED +I + ++G+RW+ IA LPGRTDN +KN+WN+ +++K+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 95.1 bits (235), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
+GPW+ EED + + V+ +G W + + LK R GK CR RW N+L P++K ++T
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 73 EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
E+ED +I + ++G+RW+ IA LPGRTDN +KN+WN+ +++K+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
+GPW+ EED + +V+ +G W + + LK R GK CR RW N+L P++K ++T
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPK-RWSDIAK--HLKGRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 73 EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
E+ED +I + ++G+RW+ IA LPGRTDN VKN+WN+ +++K+
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
+GPW+ EED + + V+ +G W + + LK R GK CR RW N+L P++K ++T
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 73 EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
E+ED +I + ++G+RW+ IA LPGRTDN +KN+WN+ +++K+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 71 FTEDEDHVICTLYSQIGSR-WSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
+T +ED + L Q G+ W +IA+ LP RTD ++ W L +L+ G
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKG 59
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGL--KRCGKSCRLRWLNYLRPDIKHGNF 71
+GP++ ED ++ YV+ +G NW P+ R K CR RW N+L P + +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQ-NW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAW 57
Query: 72 TEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
T +ED I Y ++GS+WS+IA +PGRTDN +KN WN+ + K++
Sbjct: 58 TPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIA--LPQKAGLKRCGKSCRLRWLNYLRPDIKHGN 70
K+ ++PEED LKR V HG+ IA P R + CR RW NYL P I H
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-----NRNARQCRDRWKNYLAPSISHTP 64
Query: 71 FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNT 111
+T +ED ++ + G +W+IIA PGRTD +KN W T
Sbjct: 65 WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 67 KHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKL 113
K FT +ED ++ +Q GS W +IA+ P R ++ W L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 40/52 (76%)
Query: 66 IKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
+K ++TE+ED +I + ++G+RW+ IA LPGRTDN +KN+WN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 41/53 (77%)
Query: 65 DIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
++K ++TE+ED ++ + ++G+RW+ IA LPGRTDN +KN+WN+ +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 18 SPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDH 77
+ EED L++ V +G +WI + Q + R + CR RW NY+ P ++ ++ +ED
Sbjct: 5 TEEEDLKLQQLVMRYG-AKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDM 62
Query: 78 VICTLYSQIGSRWSIIASRLPGRTDNDVKNYW 109
++ Y++ G +W+ I+ L R+DN+++N W
Sbjct: 63 LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKH 68
++ PWSPEED L + +G N I+ K R + R RW+ R KH
Sbjct: 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKIS---KFLKNRSDNNIRNRWMMIARHRAKH 104
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPD 65
+GPW+ EED L + V+ +G W + + LK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPE 52
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 69 GNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKL 113
G +T++ED + L + G RWS+IA L GR + W+ L
Sbjct: 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPD 65
+GPW+ EED + + V+ +G W + + LK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 69 GNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKL 113
G +T++ED + L + G RWS+IA L GR + W+ L
Sbjct: 4 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPD 65
+GPW+ EED + V+ +G W + + LK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 69 GNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKL 113
G +T++ED + L + G RWS+IA L GR + W+ L
Sbjct: 4 GPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 133 SPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQLSSSPSMPLLTDHHDHIAY 191
+ ++ G PT TNH + +I+L ++E PA+PT + S ++ D +D++AY
Sbjct: 497 AEMVGGEAPTTTNHPNHGRKTINLSQTEFP----PATPT-IKSRRVAIIIADGYDNVAY 550
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 71 FTEDEDHVICTLYSQIGSR-WSIIASRLPGRTDNDVKNYWNTKL 113
+T +ED + L Q G+ W +IA+ LP RTD ++ W L
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 17 WSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65
W+ EED LK+ VE +GT +W + R C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 71 FTEDEDHVICTLYSQIGSR-WSIIASRLPGRTDNDVKNYWNTKL 113
+T +ED + L Q G+ W +IA+ LP RTD ++ W L
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 17 WSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65
W+ EED LK+ VE +GT +W + R C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 71 FTEDEDHVICTLYSQIGSR-WSIIASRLPGRTDNDVKNYW 109
+T +ED + L Q G + W +AS P RTD + W
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2GI4|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Campylobacter Jejuni
Length = 156
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 106 KNYWNTKLKKKLLAGKVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQ 165
KN+ + KL +KL L+T +N+N ++ T L ++ S SL E DP
Sbjct: 67 KNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTNTQNKVLKITDFSPSLNYDEVPDPW 126
Query: 166 YPASPTQ------LSSSPSMPLLTDHHDH 188
Y + + L+ + L+ HH H
Sbjct: 127 YSGNFDETYKILSLACKNLLVFLSKHHHH 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,286,776
Number of Sequences: 62578
Number of extensions: 494182
Number of successful extensions: 1065
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 48
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)