Query 045583
Match_columns 319
No_of_seqs 217 out of 1415
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.2E-33 4E-38 229.3 9.1 105 11-117 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 7.1E-33 2.4E-37 233.6 10.8 110 13-124 1-110 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.9E-33 9.8E-38 228.5 7.5 104 14-119 1-104 (107)
4 3osg_A MYB21; transcription-DN 100.0 7.3E-33 2.5E-37 232.3 9.1 106 8-116 5-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1E-32 3.5E-37 231.4 8.3 108 8-117 21-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.6E-30 5.4E-35 225.4 8.1 108 8-117 52-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.9E-30 1E-34 223.7 5.5 114 12-127 4-118 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 2.2E-21 7.5E-26 162.4 5.1 86 41-127 1-87 (128)
9 2dim_A Cell division cycle 5-l 99.8 1.4E-21 4.8E-26 148.1 2.4 67 8-76 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 1.9E-18 6.6E-23 158.6 5.9 107 9-116 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 3.2E-18 1.1E-22 131.5 4.2 58 55-113 10-67 (73)
12 2juh_A Telomere binding protei 99.7 7E-18 2.4E-22 141.0 3.0 84 8-92 11-103 (121)
13 2din_A Cell division cycle 5-l 99.7 4.1E-17 1.4E-21 122.0 6.0 59 61-120 2-60 (66)
14 2cu7_A KIAA1915 protein; nucle 99.7 1.2E-16 4.2E-21 121.6 6.3 58 62-119 3-60 (72)
15 2d9a_A B-MYB, MYB-related prot 99.6 3.8E-17 1.3E-21 120.0 3.1 57 9-67 3-59 (60)
16 2roh_A RTBP1, telomere binding 99.6 7E-17 2.4E-21 135.1 4.5 80 9-89 26-114 (122)
17 1gvd_A MYB proto-oncogene prot 99.6 5.9E-17 2E-21 115.7 2.9 52 12-65 1-52 (52)
18 2dim_A Cell division cycle 5-l 99.6 1.9E-16 6.6E-21 119.7 5.4 63 63-125 4-67 (70)
19 1ity_A TRF1; helix-turn-helix, 99.6 9.9E-17 3.4E-21 121.0 2.9 64 8-72 4-68 (69)
20 2d9a_A B-MYB, MYB-related prot 99.6 2.8E-16 9.6E-21 115.3 4.6 55 63-117 3-58 (60)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 9.5E-17 3.3E-21 114.5 1.9 52 12-65 1-52 (52)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 1.1E-15 3.8E-20 108.9 5.5 50 66-115 1-51 (52)
23 1gvd_A MYB proto-oncogene prot 99.6 2.1E-15 7.3E-20 107.5 5.6 50 66-115 1-51 (52)
24 3sjm_A Telomeric repeat-bindin 99.6 4.4E-16 1.5E-20 116.5 1.8 56 11-67 8-64 (64)
25 1ity_A TRF1; helix-turn-helix, 99.6 2.7E-15 9.3E-20 113.1 6.2 61 61-121 3-66 (69)
26 1w0t_A Telomeric repeat bindin 99.5 4.4E-15 1.5E-19 106.5 5.5 50 67-116 1-53 (53)
27 1x41_A Transcriptional adaptor 99.5 1.4E-15 4.7E-20 111.9 2.4 56 9-66 3-58 (60)
28 1x41_A Transcriptional adaptor 99.5 4.8E-15 1.6E-19 109.0 5.0 53 63-115 3-56 (60)
29 2yum_A ZZZ3 protein, zinc fing 99.5 3.9E-15 1.3E-19 113.8 4.4 58 63-120 3-66 (75)
30 2din_A Cell division cycle 5-l 99.5 8.5E-16 2.9E-20 114.8 -0.5 58 8-69 3-60 (66)
31 2yum_A ZZZ3 protein, zinc fing 99.5 2.2E-15 7.6E-20 115.2 0.7 62 8-70 2-67 (75)
32 1w0t_A Telomeric repeat bindin 99.5 4.1E-15 1.4E-19 106.6 1.8 50 13-63 1-51 (53)
33 3sjm_A Telomeric repeat-bindin 99.5 2.3E-14 8E-19 107.1 5.2 53 65-117 8-63 (64)
34 2elk_A SPCC24B10.08C protein; 99.5 7.6E-15 2.6E-19 107.4 2.2 52 10-62 5-56 (58)
35 2ltp_A Nuclear receptor corepr 99.2 3E-15 1E-19 118.6 0.0 56 61-116 9-64 (89)
36 2elk_A SPCC24B10.08C protein; 99.5 3.9E-14 1.3E-18 103.6 5.5 51 63-113 4-56 (58)
37 2cu7_A KIAA1915 protein; nucle 99.4 1.2E-14 4.2E-19 110.5 1.0 58 8-68 3-60 (72)
38 3osg_A MYB21; transcription-DN 99.4 1.8E-13 6.3E-18 114.2 6.1 66 63-128 6-71 (126)
39 1gv2_A C-MYB, MYB proto-oncoge 99.4 1.7E-13 5.8E-18 110.5 5.4 63 65-127 1-64 (105)
40 2aje_A Telomere repeat-binding 99.4 1.4E-13 4.9E-18 112.3 4.3 81 7-88 6-95 (105)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3.6E-13 1.2E-17 103.3 5.6 51 64-114 14-68 (73)
42 2llk_A Cyclin-D-binding MYB-li 99.4 1.3E-13 4.6E-18 105.7 2.6 58 6-68 15-72 (73)
43 2ckx_A NGTRF1, telomere bindin 99.3 4E-13 1.4E-17 105.4 4.0 69 15-85 1-79 (83)
44 3zqc_A MYB3; transcription-DNA 99.3 3.6E-13 1.2E-17 113.0 3.0 83 8-97 48-130 (131)
45 2k9n_A MYB24; R2R3 domain, DNA 99.3 9.5E-13 3.2E-17 106.8 4.8 60 68-127 1-61 (107)
46 2yus_A SWI/SNF-related matrix- 99.3 5.9E-13 2E-17 103.4 2.8 54 5-61 9-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.3 1.1E-12 3.9E-17 101.8 3.9 48 65-112 15-62 (79)
48 1x58_A Hypothetical protein 49 99.3 5.1E-12 1.7E-16 93.8 5.9 50 66-115 6-58 (62)
49 1ign_A Protein (RAP1); RAP1,ye 99.3 2.9E-12 1E-16 117.7 5.5 55 64-118 4-64 (246)
50 2ltp_A Nuclear receptor corepr 98.9 5.2E-13 1.8E-17 105.7 0.0 54 8-64 10-63 (89)
51 2ckx_A NGTRF1, telomere bindin 99.2 5.6E-12 1.9E-16 98.8 5.6 49 69-117 1-54 (83)
52 2juh_A Telomere binding protei 99.2 4.6E-12 1.6E-16 105.8 4.7 55 62-116 11-70 (121)
53 2aje_A Telomere repeat-binding 99.2 1.2E-11 4.1E-16 101.0 6.7 53 64-116 9-66 (105)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.4E-12 8.3E-17 98.6 1.7 57 6-63 10-68 (73)
55 2cjj_A Radialis; plant develop 99.2 1.6E-11 5.3E-16 98.3 6.2 50 67-116 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.1 3.9E-11 1.3E-15 100.3 5.5 53 64-116 27-84 (122)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 8.6E-10 2.9E-14 81.3 5.7 48 67-114 11-58 (61)
58 3hm5_A DNA methyltransferase 1 98.9 8.6E-10 2.9E-14 88.1 5.6 66 51-120 17-87 (93)
59 2cjj_A Radialis; plant develop 98.9 3.2E-10 1.1E-14 90.6 1.8 48 14-62 8-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.2E-09 1.4E-13 80.3 5.0 50 65-115 5-58 (72)
61 2iw5_B Protein corest, REST co 98.7 9.7E-09 3.3E-13 93.7 5.5 49 67-115 132-180 (235)
62 1x58_A Hypothetical protein 49 98.7 4.1E-09 1.4E-13 78.2 1.9 50 12-64 6-58 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.2E-08 4.2E-13 75.0 2.2 52 8-62 6-57 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.5 1.2E-07 4E-12 72.6 5.0 49 67-115 7-59 (73)
65 2xag_B REST corepressor 1; ami 98.5 7.9E-08 2.7E-12 96.3 4.3 46 69-114 381-426 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.2E-08 1.1E-12 75.5 0.4 52 10-63 4-57 (72)
67 1fex_A TRF2-interacting telome 98.3 5.7E-07 2E-11 65.9 4.6 47 68-114 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 1.5E-07 5.2E-12 69.0 0.8 48 14-63 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 3.2E-07 1.1E-11 70.2 1.1 50 14-64 8-59 (73)
70 2iw5_B Protein corest, REST co 98.2 5.9E-07 2E-11 82.0 2.3 51 10-63 129-179 (235)
71 2yqk_A Arginine-glutamic acid 98.1 4.4E-06 1.5E-10 61.7 6.1 49 63-111 4-53 (63)
72 4eef_G F-HB80.4, designed hema 98.1 1.2E-06 4E-11 67.0 2.4 42 68-109 20-65 (74)
73 1ug2_A 2610100B20RIK gene prod 98.0 5.4E-06 1.8E-10 65.7 4.5 46 70-115 35-83 (95)
74 2lr8_A CAsp8-associated protei 97.1 1.6E-06 5.4E-11 65.3 0.0 44 70-114 16-62 (70)
75 4iej_A DNA methyltransferase 1 97.8 2.7E-05 9.4E-10 62.0 6.2 61 56-120 22-87 (93)
76 1ofc_X ISWI protein; nuclear p 97.8 3.1E-05 1.1E-09 73.6 7.1 99 15-115 111-275 (304)
77 4eef_G F-HB80.4, designed hema 97.8 4.5E-06 1.5E-10 63.8 0.7 45 14-59 20-66 (74)
78 4a69_C Nuclear receptor corepr 97.6 7E-05 2.4E-09 59.6 5.3 44 68-111 43-86 (94)
79 2crg_A Metastasis associated p 97.6 0.00011 3.7E-09 55.4 5.7 43 68-110 8-51 (70)
80 2yqk_A Arginine-glutamic acid 97.4 6E-05 2E-09 55.6 2.5 50 8-60 3-53 (63)
81 3hm5_A DNA methyltransferase 1 97.2 9.4E-05 3.2E-09 58.9 1.7 49 13-63 29-81 (93)
82 2xag_B REST corepressor 1; ami 97.2 0.00013 4.4E-09 73.2 2.4 49 11-62 377-425 (482)
83 1ug2_A 2610100B20RIK gene prod 97.1 0.00014 4.8E-09 57.6 1.4 52 9-61 28-80 (95)
84 2ebi_A DNA binding protein GT- 97.1 0.00027 9.3E-09 54.6 2.9 49 68-116 4-66 (86)
85 2lr8_A CAsp8-associated protei 95.8 0.00024 8.1E-09 53.5 0.0 52 10-63 10-62 (70)
86 4a69_C Nuclear receptor corepr 96.6 0.00068 2.3E-08 53.8 1.6 44 14-60 43-86 (94)
87 2crg_A Metastasis associated p 96.5 0.00088 3E-08 50.4 1.7 45 13-60 7-52 (70)
88 2y9y_A Imitation switch protei 96.4 0.0069 2.4E-07 59.0 8.1 100 15-115 124-291 (374)
89 2ebi_A DNA binding protein GT- 96.4 0.00024 8.3E-09 54.9 -2.2 51 13-63 3-64 (86)
90 4iej_A DNA methyltransferase 1 94.5 0.012 4.1E-07 46.8 1.4 49 12-62 28-80 (93)
91 4b4c_A Chromodomain-helicase-D 94.1 0.045 1.5E-06 48.2 4.6 38 5-43 125-162 (211)
92 1irz_A ARR10-B; helix-turn-hel 93.6 0.13 4.3E-06 38.1 5.4 47 67-113 6-57 (64)
93 1ofc_X ISWI protein; nuclear p 91.8 0.25 8.6E-06 46.8 6.3 46 69-114 111-157 (304)
94 4b4c_A Chromodomain-helicase-D 91.8 0.18 6.3E-06 44.2 5.0 49 67-115 6-59 (211)
95 1irz_A ARR10-B; helix-turn-hel 87.2 0.28 9.7E-06 36.2 2.1 50 11-60 4-55 (64)
96 2xb0_X Chromo domain-containin 86.9 0.55 1.9E-05 43.7 4.5 28 15-43 169-196 (270)
97 2xb0_X Chromo domain-containin 78.2 3.5 0.00012 38.3 6.2 47 68-114 3-54 (270)
98 1u78_A TC3 transposase, transp 72.2 12 0.0004 29.3 7.2 87 16-109 6-100 (141)
99 2o8x_A Probable RNA polymerase 66.2 6 0.0002 27.4 3.7 43 71-115 16-58 (70)
100 1ku3_A Sigma factor SIGA; heli 62.4 7.7 0.00026 27.7 3.8 44 71-116 11-58 (73)
101 2p7v_B Sigma-70, RNA polymeras 60.5 7.9 0.00027 27.2 3.5 40 75-115 9-52 (68)
102 2rq5_A Protein jumonji; develo 58.0 30 0.001 28.1 7.0 76 13-115 6-96 (121)
103 3hug_A RNA polymerase sigma fa 50.8 14 0.00049 27.4 3.7 40 75-115 41-80 (92)
104 3i4p_A Transcriptional regulat 49.9 11 0.00037 31.2 3.2 46 74-120 3-49 (162)
105 3cz6_A DNA-binding protein RAP 46.5 12 0.00042 32.3 3.0 25 10-34 110-142 (168)
106 2q1z_A RPOE, ECF SIGE; ECF sig 44.1 19 0.00066 29.3 3.8 29 86-115 150-178 (184)
107 2k27_A Paired box protein PAX- 43.9 80 0.0027 25.4 7.6 67 14-86 23-99 (159)
108 2y9y_A Imitation switch protei 43.3 36 0.0012 33.0 6.0 43 69-111 124-168 (374)
109 3ulq_B Transcriptional regulat 41.6 34 0.0012 25.7 4.5 47 67-116 26-72 (90)
110 1or7_A Sigma-24, RNA polymeras 41.3 29 0.00099 28.3 4.5 30 85-115 154-183 (194)
111 1tty_A Sigma-A, RNA polymerase 40.6 27 0.00091 25.8 3.8 40 75-115 22-65 (87)
112 2yqf_A Ankyrin-1; death domain 40.3 26 0.0009 27.5 3.9 35 72-107 14-48 (111)
113 1x3u_A Transcriptional regulat 40.2 37 0.0012 23.9 4.4 42 71-115 17-58 (79)
114 2li6_A SWI/SNF chromatin-remod 38.4 16 0.00054 29.2 2.3 38 78-115 53-98 (116)
115 2rq5_A Protein jumonji; develo 37.9 9.1 0.00031 31.2 0.8 58 24-84 46-113 (121)
116 1k78_A Paired box protein PAX5 37.1 57 0.002 25.9 5.6 67 14-86 30-106 (149)
117 2lm1_A Lysine-specific demethy 35.4 38 0.0013 26.3 4.1 39 77-115 47-97 (107)
118 1hlv_A CENP-B, major centromer 35.3 1.3E+02 0.0043 23.2 7.2 91 13-115 4-110 (131)
119 2of5_H Leucine-rich repeat and 34.8 28 0.00095 27.8 3.2 31 76-107 13-43 (118)
120 2jrz_A Histone demethylase jar 34.7 34 0.0012 27.3 3.7 39 77-115 43-93 (117)
121 1xsv_A Hypothetical UPF0122 pr 34.1 48 0.0016 25.9 4.5 40 75-115 29-68 (113)
122 1fse_A GERE; helix-turn-helix 34.0 57 0.002 22.4 4.5 44 69-115 10-53 (74)
123 1kkx_A Transcription regulator 33.3 21 0.00071 29.0 2.2 39 78-116 52-98 (123)
124 2jpc_A SSRB; DNA binding prote 33.3 52 0.0018 21.9 4.1 38 76-115 3-40 (61)
125 1je8_A Nitrate/nitrite respons 32.9 45 0.0015 24.3 3.9 43 70-115 21-63 (82)
126 3c57_A Two component transcrip 32.9 41 0.0014 25.2 3.8 44 70-116 27-70 (95)
127 2of5_A Death domain-containing 32.7 35 0.0012 27.2 3.5 38 66-107 17-54 (114)
128 1wxp_A THO complex subunit 1; 32.6 43 0.0015 26.2 4.0 31 76-107 18-48 (110)
129 3mzy_A RNA polymerase sigma-H 32.3 38 0.0013 26.5 3.7 30 85-115 122-151 (164)
130 2eqy_A RBP2 like, jumonji, at 31.5 42 0.0014 27.0 3.8 39 77-115 45-95 (122)
131 1rp3_A RNA polymerase sigma fa 31.4 49 0.0017 27.7 4.4 38 77-115 193-230 (239)
132 2cxy_A BAF250B subunit, HBAF25 31.3 43 0.0015 26.9 3.9 39 77-115 54-104 (125)
133 2e1c_A Putative HTH-type trans 31.0 34 0.0012 28.7 3.3 45 74-119 27-72 (171)
134 2li6_A SWI/SNF chromatin-remod 30.6 11 0.00038 30.2 0.1 40 24-64 53-98 (116)
135 2o71_A Death domain-containing 30.5 37 0.0013 27.2 3.3 29 78-107 26-54 (115)
136 2dbb_A Putative HTH-type trans 30.0 40 0.0014 27.0 3.5 45 74-119 9-54 (151)
137 1tc3_C Protein (TC3 transposas 27.0 97 0.0033 18.8 4.4 38 70-109 5-42 (51)
138 2rnj_A Response regulator prot 27.0 48 0.0017 24.4 3.2 42 71-115 30-71 (91)
139 1p4w_A RCSB; solution structur 26.5 78 0.0027 24.2 4.4 46 68-116 32-77 (99)
140 2cyy_A Putative HTH-type trans 26.2 50 0.0017 26.5 3.4 45 74-119 7-52 (151)
141 1c20_A DEAD ringer protein; DN 25.3 64 0.0022 26.0 3.9 39 77-115 55-106 (128)
142 2kk0_A AT-rich interactive dom 24.0 23 0.00079 29.5 0.9 61 24-84 68-140 (145)
143 2jxj_A Histone demethylase jar 23.6 29 0.00098 26.5 1.4 38 78-115 40-89 (96)
144 2kk0_A AT-rich interactive dom 23.1 71 0.0024 26.4 3.8 39 77-115 67-118 (145)
145 1s7o_A Hypothetical UPF0122 pr 22.4 82 0.0028 24.6 3.9 42 71-114 23-64 (113)
146 1ig6_A MRF-2, modulator recogn 20.9 39 0.0013 26.3 1.7 39 77-115 36-87 (107)
147 2pn6_A ST1022, 150AA long hypo 20.1 69 0.0024 25.5 3.1 45 74-119 3-48 (150)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.2e-33 Score=229.25 Aligned_cols=105 Identities=40% Similarity=0.853 Sum_probs=99.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCch
Q 045583 11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRW 90 (319)
Q Consensus 11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW 90 (319)
.+++|+||+|||++|+++|++||. .+|..||+.++ +|+++||++||.++|+|.+++++||+|||++|++++.+||.+|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence 478999999999999999999998 58999999997 9999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583 91 SIIASRLPGRTDNDVKNYWNTKLKKKL 117 (319)
Q Consensus 91 s~IA~~lpgRT~~qcKnRW~~~lkkkl 117 (319)
+.||+.|||||+++||+||+.++++++
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998764
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=7.1e-33 Score=233.61 Aligned_cols=110 Identities=36% Similarity=0.748 Sum_probs=104.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhh
Q 045583 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSI 92 (319)
Q Consensus 13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~ 92 (319)
.||+||+|||++|+++|.+||. ++|..||..++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 78 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSV 78 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHH
Confidence 3799999999999999999997 58999999998 999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHhhhHHhcCCCcc
Q 045583 93 IASRLPGRTDNDVKNYWNTKLKKKLLAGKVSL 124 (319)
Q Consensus 93 IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~ 124 (319)
||+.|||||+++||+||+.++++++..+.+..
T Consensus 79 Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 79 IAKLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp HTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999999999999999999999988766544
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=2.9e-33 Score=228.45 Aligned_cols=104 Identities=28% Similarity=0.614 Sum_probs=99.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhh
Q 045583 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSII 93 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~I 93 (319)
||+||+|||++|+++|++||. .+|..||..++ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|+.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence 689999999999999999997 58999999998 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583 94 ASRLPGRTDNDVKNYWNTKLKKKLLA 119 (319)
Q Consensus 94 A~~lpgRT~~qcKnRW~~~lkkkl~~ 119 (319)
|+.|||||+++||+||+.++++....
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 99999999999999999998886543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=7.3e-33 Score=232.28 Aligned_cols=106 Identities=39% Similarity=0.726 Sum_probs=101.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG 87 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G 87 (319)
.++.++||+||+|||++|+++|.+||. +|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|++++.+||
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999997 8999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 88 SRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 88 ~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
.+|+.||+.|||||+++||+||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888773
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=1e-32 Score=231.45 Aligned_cols=108 Identities=40% Similarity=0.816 Sum_probs=102.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG 87 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G 87 (319)
.+|++++|+||+|||++|+++|++||. .+|..||..++ +|+++||++||.++|+|.+++++||+|||++|++++.+||
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 468999999999999999999999997 58999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583 88 SRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117 (319)
Q Consensus 88 ~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl 117 (319)
++|+.||+.|||||+++||+||+.++++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999988764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.6e-30 Score=225.37 Aligned_cols=108 Identities=39% Similarity=0.821 Sum_probs=102.4
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG 87 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G 87 (319)
.+|.+++++||+|||++|+++|.+||. .+|..||..++ +|+++||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 468899999999999999999999997 48999999997 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583 88 SRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117 (319)
Q Consensus 88 ~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl 117 (319)
++|+.||+.|||||+++||+||+.++++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999988764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.9e-30 Score=223.68 Aligned_cols=114 Identities=29% Similarity=0.631 Sum_probs=70.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCC-ch
Q 045583 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGS-RW 90 (319)
Q Consensus 12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kW 90 (319)
+++++||+|||++|+++|++||. ++|..||+.++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 67999999999999999999997 58999999998 99999999999999999999999999999999999999996 79
Q ss_pred hhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccccc
Q 045583 91 SIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTS 127 (319)
Q Consensus 91 s~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~ 127 (319)
..||+.|||||+.||++||..++.+.+.++.|+....
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 118 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHH
Confidence 9999999999999999999999999888888876543
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=2.2e-21 Score=162.42 Aligned_cols=86 Identities=24% Similarity=0.524 Sum_probs=61.1
Q ss_pred ccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583 41 LPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119 (319)
Q Consensus 41 IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~ 119 (319)
||+.++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||..+|.+.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 677787 99999999999999999999999999999999999999996 6999999999999999999999999999888
Q ss_pred CCCccccc
Q 045583 120 GKVSLLTS 127 (319)
Q Consensus 120 ~k~s~~~~ 127 (319)
+.|+....
T Consensus 80 ~~WT~eEd 87 (128)
T 1h8a_C 80 TSWTEEED 87 (128)
T ss_dssp SCCCHHHH
T ss_pred ccCCHHHH
Confidence 88886543
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-21 Score=148.05 Aligned_cols=67 Identities=27% Similarity=0.586 Sum_probs=63.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHH
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDED 76 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED 76 (319)
..+.+++|+||+|||++|+++|.+||. .+|..||+.++ +|+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 357899999999999999999999996 59999999998 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.73 E-value=1.9e-18 Score=158.62 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=92.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCC----CcccccccccCcccccccccccccccCCCCC-----------------
Q 045583 9 KANVKRGPWSPEEDATLKRYVETHGTGG----NWIALPQKAGLKRCGKSCRLRWLNYLRPDIK----------------- 67 (319)
Q Consensus 9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~----~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lk----------------- 67 (319)
.+.++|++||+|||++|+++|.++|... .|..||+.|+ +||+.|||.||..+|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4568899999999999999999998721 2999999998 99999999999999999996
Q ss_pred ------------CCCCCHHHHHHHHHHHhh-h--------------------------------CC--------------
Q 045583 68 ------------HGNFTEDEDHVICTLYSQ-I--------------------------------GS-------------- 88 (319)
Q Consensus 68 ------------rg~WT~EED~~Ll~lv~~-~--------------------------------G~-------------- 88 (319)
+..||.|||-.|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999998876 1 11
Q ss_pred -----------chhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 89 -----------RWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 89 -----------kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
.|..||+.+|+||.+.+|+||+..++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999888765
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-18 Score=131.45 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=47.1
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHh
Q 045583 55 RLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKL 113 (319)
Q Consensus 55 r~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~l 113 (319)
--||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999997643
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=7e-18 Score=141.03 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=77.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc---CcccccccccccccccC-----CCCCCC-CCCHHHHHH
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG---LKRCGKSCRLRWLNYLR-----PDIKHG-NFTEDEDHV 78 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg---~~Rt~kQCr~Rw~n~L~-----p~lkrg-~WT~EED~~ 78 (319)
.++..++++||+|||+.|+++|++||. ++|..|++.+. .+||+.+|++||.++|+ |.++++ +|++||+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 457889999999999999999999998 69999998852 48999999999999998 999999 999999999
Q ss_pred HHHHHhhhCCchhh
Q 045583 79 ICTLYSQIGSRWSI 92 (319)
Q Consensus 79 Ll~lv~~~G~kWs~ 92 (319)
|++++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=122.04 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=56.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcC
Q 045583 61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120 (319)
Q Consensus 61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~ 120 (319)
+|+|.+++++||+|||++|+++++++|.+|..||+ ++|||+.|||+||+.++++.+.++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999988765
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.2e-16 Score=121.57 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=55.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583 62 LRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119 (319)
Q Consensus 62 L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~ 119 (319)
++|.+++++||+|||++|++++.+||.+|..||++|||||++|||+||+.++++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998665
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=3.8e-17 Score=119.95 Aligned_cols=57 Identities=26% Similarity=0.556 Sum_probs=53.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCC
Q 045583 9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIK 67 (319)
Q Consensus 9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lk 67 (319)
.|.+++++||+|||++|+++|.+||. .+|..||+.++ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 57899999999999999999999996 48999999998 99999999999999999876
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=7e-17 Score=135.14 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc---Cccccccccccccccc-----CCCCCCCCCCHHH-HHHH
Q 045583 9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPDIKHGNFTEDE-DHVI 79 (319)
Q Consensus 9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg---~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EE-D~~L 79 (319)
+...++++||+|||+.|+++|++||. ++|..|++... .+||+.||++||.|++ +|.++++.|+++| +++|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 45678999999999999999999998 69999998641 4899999999999999 8999999999999 8999
Q ss_pred HHHHhhhCCc
Q 045583 80 CTLYSQIGSR 89 (319)
Q Consensus 80 l~lv~~~G~k 89 (319)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999985
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=5.9e-17 Score=115.70 Aligned_cols=52 Identities=38% Similarity=0.841 Sum_probs=49.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCC
Q 045583 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65 (319)
Q Consensus 12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~ 65 (319)
+++|+||+|||++|+++|.+||. .+|..||+.++ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999997 58999999998 999999999999999984
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=119.66 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=59.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccc
Q 045583 63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLL 125 (319)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~ 125 (319)
.|.+++++||+|||++|+++|.+|| .+|..||.+|+|||+.|||+||+.+|++.+.++.|+..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e 67 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP 67 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence 4688999999999999999999999 79999999999999999999999999999999999864
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=9.9e-17 Score=121.05 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=58.6
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccC-cccccccccccccccCCCCCCCCCC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLRPDIKHGNFT 72 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~-~Rt~kQCr~Rw~n~L~p~lkrg~WT 72 (319)
.++..++++||+|||++|+++|++||. ++|..||+.++. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 467789999999999999999999997 599999999875 8999999999999999999988764
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=2.8e-16 Score=115.28 Aligned_cols=55 Identities=27% Similarity=0.480 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583 63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117 (319)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl 117 (319)
.|.+++++||+|||++|+++|.+|| .+|..||+.|+|||+.|||+||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 599999999999999999999999987754
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=9.5e-17 Score=114.48 Aligned_cols=52 Identities=33% Similarity=0.738 Sum_probs=47.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCC
Q 045583 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65 (319)
Q Consensus 12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~ 65 (319)
+++++||+|||++|+++|++||. ++|..||+.++ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998 58999999998 999999999999999984
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=1.1e-15 Score=108.93 Aligned_cols=50 Identities=32% Similarity=0.617 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 66 IKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999998864
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.57 E-value=2.1e-15 Score=107.53 Aligned_cols=50 Identities=32% Similarity=0.713 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 66 IKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 699999999999999999999988764
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.57 E-value=4.4e-16 Score=116.46 Aligned_cols=56 Identities=27% Similarity=0.477 Sum_probs=49.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc-CcccccccccccccccCCCCC
Q 045583 11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG-LKRCGKSCRLRWLNYLRPDIK 67 (319)
Q Consensus 11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg-~~Rt~kQCr~Rw~n~L~p~lk 67 (319)
..+|++||+|||++|+++|++||. ++|..||+.++ .+|++.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 357899999999999999999998 58999998764 379999999999999999874
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=2.7e-15 Score=113.12 Aligned_cols=61 Identities=25% Similarity=0.310 Sum_probs=55.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhHHhcCC
Q 045583 61 YLRPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP--GRTDNDVKNYWNTKLKKKLLAGK 121 (319)
Q Consensus 61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcKnRW~~~lkkkl~~~k 121 (319)
...+..++++||+|||++|+++|.+|| .+|+.||..|+ |||+.|||+||+.+|++.+.++.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 345678899999999999999999999 59999999999 99999999999999999876543
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=4.4e-15 Score=106.50 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhH
Q 045583 67 KHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP--GRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcKnRW~~~lkkk 116 (319)
++++||+|||++|+++|.+|| .+|+.||..|+ |||+.||++||+.+++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 578999999999999999999 59999999999 999999999999988753
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.4e-15 Score=111.95 Aligned_cols=56 Identities=18% Similarity=0.457 Sum_probs=51.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCC
Q 045583 9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDI 66 (319)
Q Consensus 9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~l 66 (319)
.+++++++||+|||++|+++|++||. ++|..||+.++ +|+++||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 46899999999999999999999996 59999999998 9999999999999998653
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=4.8e-15 Score=109.03 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.+.+.+++||+|||++|+++|.+|| .+|..||++|+|||+.|||+||+.++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3678999999999999999999999 7999999999999999999999988753
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-15 Score=113.82 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhC------CchhhhcccCCCCCHHHHHHHHHHHhhhHHhcC
Q 045583 63 RPDIKHGNFTEDEDHVICTLYSQIG------SRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120 (319)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G------~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~ 120 (319)
+|.+.+++||+|||++|++++.+|| .+|..||++|+|||+.||++||+.+|++.++.|
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999 799999999999999999999999998876655
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.5e-16 Score=114.84 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=53.3
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHG 69 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg 69 (319)
..|.+++++||+|||++|+++|++||. +|..||+ +. +|+++||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 578999999999999999999999997 8999999 55 6999999999999999877654
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-15 Score=115.17 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCC----CCcccccccccCcccccccccccccccCCCCCCCC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGN 70 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~----~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~ 70 (319)
.+|.+++++||+|||++|+++|.+||.. .+|..||+.++ +||++||+.||.++|.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999941 38999999998 99999999999999998777664
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=4.1e-15 Score=106.62 Aligned_cols=50 Identities=30% Similarity=0.499 Sum_probs=46.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCcccccccccC-cccccccccccccccC
Q 045583 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLR 63 (319)
Q Consensus 13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~-~Rt~kQCr~Rw~n~L~ 63 (319)
++++||+|||++|+++|++||. ++|..||..++. +|++.||++||.++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999997 599999999875 6999999999999875
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.48 E-value=2.3e-14 Score=107.08 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCC--CCCHHHHHHHHHHHhhhHH
Q 045583 65 DIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLP--GRTDNDVKNYWNTKLKKKL 117 (319)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lp--gRT~~qcKnRW~~~lkkkl 117 (319)
..++++||+|||++|+++|.+||. +|+.||+.++ |||+.|||+||++++|..+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 357899999999999999999995 8999999865 9999999999999887643
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=7.6e-15 Score=107.42 Aligned_cols=52 Identities=27% Similarity=0.493 Sum_probs=47.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583 10 ANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62 (319)
Q Consensus 10 p~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L 62 (319)
..+.+++||+|||++|+++|++||. ++|..||+.++.+|+++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999997 599999999987899999999999875
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=3e-15 Score=118.65 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
.+.|.+++++||+|||++|++++.+||.+|+.||.+|+|||++|||+||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999988774
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=3.9e-14 Score=103.60 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=46.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCC-CCCHHHHHHHHHHHh
Q 045583 63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP-GRTDNDVKNYWNTKL 113 (319)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp-gRT~~qcKnRW~~~l 113 (319)
...+.+++||+|||++|+++|.+|| .+|..||++|+ |||+.||++||..++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3457789999999999999999999 79999999999 999999999998764
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=1.2e-14 Score=110.47 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=54.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKH 68 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkr 68 (319)
..|.+++++||+|||++|+++|++||. +|..||+.++ +|++.||+.||.++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999998 8999999998 999999999999999877665
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.41 E-value=1.8e-13 Score=114.20 Aligned_cols=66 Identities=23% Similarity=0.417 Sum_probs=60.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCcccccC
Q 045583 63 RPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSN 128 (319)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~~ 128 (319)
.+..++++||+|||++|+++|.+||.+|..||+.|+|||..||+.||..+|...+.++.|+.....
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~ 71 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDA 71 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999876543
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.40 E-value=1.7e-13 Score=110.47 Aligned_cols=63 Identities=25% Similarity=0.546 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccccc
Q 045583 65 DIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTS 127 (319)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~ 127 (319)
++++++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.+.++.|+....
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd 64 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 64 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHH
Confidence 478999999999999999999997 799999999999999999999999999888888886543
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.39 E-value=1.4e-13 Score=112.35 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc---Cccccccccccccccc-----CCCCCCCCCCHHHHHH
Q 045583 7 CDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPDIKHGNFTEDEDHV 78 (319)
Q Consensus 7 c~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg---~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EED~~ 78 (319)
-.+...++++||+|||+.|+++|++||. ++|..|++.+. .+||+.+|++||.+++ +|.++++.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 3567889999999999999999999998 69999998652 4899999999999999 6899999888877666
Q ss_pred -HHHHHhhhCC
Q 045583 79 -ICTLYSQIGS 88 (319)
Q Consensus 79 -Ll~lv~~~G~ 88 (319)
+++|+..+|+
T Consensus 85 rv~~~~~~~~~ 95 (105)
T 2aje_A 85 RVLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7777766543
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=3.6e-13 Score=103.25 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhC----CchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583 64 PDIKHGNFTEDEDHVICTLYSQIG----SRWSIIASRLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 64 p~lkrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcKnRW~~~lk 114 (319)
+.+.+++||.|||++|++++.+|| .+|.+||++|||||+.||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567889999999999999999999 689999999999999999999987764
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-13 Score=105.67 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCC
Q 045583 6 CCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKH 68 (319)
Q Consensus 6 cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkr 68 (319)
-...|.+++++||+|||++|+++|++||. +|..||+.+ +|++.||+.||.. |....+.
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 34679999999999999999999999998 699999998 7999999999974 5544443
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=4e-13 Score=105.40 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccc----ccCccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHh
Q 045583 15 GPWSPEEDATLKRYVETHGTGGNWIALPQK----AGLKRCGKSCRLRWLNYL-----RPDIKHG-NFTEDEDHVICTLYS 84 (319)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~~----lg~~Rt~kQCr~Rw~n~L-----~p~lkrg-~WT~EED~~Ll~lv~ 84 (319)
++||+|||+.|+++|++||. ++|..|++. +. +||+.+|++||.++| +|.++++ +..+++..+++.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998 699999985 55 899999999999998 5776665 677777788888876
Q ss_pred h
Q 045583 85 Q 85 (319)
Q Consensus 85 ~ 85 (319)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.33 E-value=3.6e-13 Score=113.01 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=61.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG 87 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G 87 (319)
..|.+++|+||+|||++|+++|.+||. +|..||+.++ +|++.||+.||.++|++.+..++|+.+- +......+
T Consensus 48 l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk 120 (131)
T 3zqc_A 48 LDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK 120 (131)
T ss_dssp TSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence 458899999999999999999999997 8999999998 9999999999999999999999988753 11122334
Q ss_pred CchhhhcccC
Q 045583 88 SRWSIIASRL 97 (319)
Q Consensus 88 ~kWs~IA~~l 97 (319)
.+|+.|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 5788888765
No 45
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.32 E-value=9.5e-13 Score=106.84 Aligned_cols=60 Identities=23% Similarity=0.358 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccccc
Q 045583 68 HGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTS 127 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~ 127 (319)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.+.++.|+....
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd 61 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEED 61 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHH
Confidence 579999999999999999997 899999999999999999999999999999999886543
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=5.9e-13 Score=103.40 Aligned_cols=54 Identities=20% Similarity=0.402 Sum_probs=49.7
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccc
Q 045583 5 PCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61 (319)
Q Consensus 5 ~cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~ 61 (319)
..+.++...+++||+|||++|+++|++||. +|..||+.++ +|++.||+.||.++
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 9 LAKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cCCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345677888999999999999999999994 9999999999 89999999999998
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=101.82 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045583 65 DIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTK 112 (319)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~ 112 (319)
...+++||+|||++|++++.+||.+|..||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999644
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=5.1e-12 Score=93.81 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCchhhhc---ccCCCCCHHHHHHHHHHHhhh
Q 045583 66 IKHGNFTEDEDHVICTLYSQIGSRWSIIA---SRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~kWs~IA---~~lpgRT~~qcKnRW~~~lkk 115 (319)
-++.+||+|||+.|+++|++||.+|+.|+ ..+++||+.++|+||+.++|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 577999999999999888765
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.26 E-value=2.9e-12 Score=117.70 Aligned_cols=55 Identities=25% Similarity=0.481 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCc------hhhhcccCCCCCHHHHHHHHHHHhhhHHh
Q 045583 64 PDIKHGNFTEDEDHVICTLYSQIGSR------WSIIASRLPGRTDNDVKNYWNTKLKKKLL 118 (319)
Q Consensus 64 p~lkrg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~lpgRT~~qcKnRW~~~lkkkl~ 118 (319)
+.+++++||+|||++|+++|+++|++ |..||+.|||||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45788999999999999999999885 99999999999999999999999999876
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.91 E-value=5.2e-13 Score=105.72 Aligned_cols=54 Identities=28% Similarity=0.545 Sum_probs=50.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCC
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p 64 (319)
..|.+++|+||+|||++|+++|.+||. +|..||..++ +||+.||+.||.++|+.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 468899999999999999999999998 7999999998 99999999999999864
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=5.6e-12 Score=98.85 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhHH
Q 045583 69 GNFTEDEDHVICTLYSQIGS-RWSIIASR----LPGRTDNDVKNYWNTKLKKKL 117 (319)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcKnRW~~~lkkkl 117 (319)
.+||+|||++|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999998 99999996 899999999999999997653
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.24 E-value=4.6e-12 Score=105.85 Aligned_cols=55 Identities=24% Similarity=0.394 Sum_probs=50.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhH
Q 045583 62 LRPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASR----LPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 62 L~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcKnRW~~~lkkk 116 (319)
+.+..++++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456788999999999999999999998 99999998 49999999999999999853
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.23 E-value=1.2e-11 Score=100.99 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccC----CCCCHHHHHHHHHHHhhhH
Q 045583 64 PDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRL----PGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 64 p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l----pgRT~~qcKnRW~~~lkkk 116 (319)
+..++++||+|||++|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4678899999999999999999998 999999975 8999999999999998754
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.21 E-value=2.4e-12 Score=98.63 Aligned_cols=57 Identities=14% Similarity=0.343 Sum_probs=50.8
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCC--CCcccccccccCcccccccccccccccC
Q 045583 6 CCDKANVKRGPWSPEEDATLKRYVETHGTG--GNWIALPQKAGLKRCGKSCRLRWLNYLR 63 (319)
Q Consensus 6 cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~--~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~ 63 (319)
...++...+++||+|||++|++++.+||.. .+|..||+.|+ +||.+||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456788899999999999999999999831 37999999998 9999999999998765
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.21 E-value=1.6e-11 Score=98.27 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhC----CchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 67 KHGNFTEDEDHVICTLYSQIG----SRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
.+++||.|||++|++++.+|| ++|.+||++|||||+++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999887663
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.13 E-value=3.9e-11 Score=100.33 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhH
Q 045583 64 PDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASR----LPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 64 p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcKnRW~~~lkkk 116 (319)
...++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999998 99999986 48999999999999999754
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=8.6e-10 Score=81.25 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583 67 KHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lk 114 (319)
..++||+||++++++++.+||.+|..||..||+||..+|..+|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999966543
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.94 E-value=8.6e-10 Score=88.13 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=59.5
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccC-----CCCCHHHHHHHHHHHhhhHHhcC
Q 045583 51 GKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRL-----PGRTDNDVKNYWNTKLKKKLLAG 120 (319)
Q Consensus 51 ~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~l-----pgRT~~qcKnRW~~~lkkkl~~~ 120 (319)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+.++ ++||..++|+||..+.++.+..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678999999976 89999999999999999999999999999 58999999999999888876654
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.90 E-value=3.2e-10 Score=90.60 Aligned_cols=48 Identities=15% Similarity=0.387 Sum_probs=43.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC--CCcccccccccCccccccccccccccc
Q 045583 14 RGPWSPEEDATLKRYVETHGTG--GNWIALPQKAGLKRCGKSCRLRWLNYL 62 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~G~~--~~W~~IA~~lg~~Rt~kQCr~Rw~n~L 62 (319)
+++||+|||++|.+++.+||.+ ..|..||+.++ +||.+||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 6789999999999999999742 47999999998 999999999998875
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.80 E-value=4.2e-09 Score=80.34 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhC----CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 65 DIKHGNFTEDEDHVICTLYSQIG----SRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
..+.+.||.||+++|.+++.+|+ .+|.+||..| |||..+|++||..+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 6899999998 99999999999877654
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.72 E-value=9.7e-09 Score=93.72 Aligned_cols=49 Identities=14% Similarity=0.294 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 67 KHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
...+||+||++++++++.+||++|..||+.|++||..|||++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999877665
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.69 E-value=4.1e-09 Score=78.16 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCccccc---ccccCcccccccccccccccCC
Q 045583 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALP---QKAGLKRCGKSCRLRWLNYLRP 64 (319)
Q Consensus 12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA---~~lg~~Rt~kQCr~Rw~n~L~p 64 (319)
..+.+||+|||+.|+++|++||. +|..|+ ..+. +|+...+++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 46899999999999999999997 899999 4544 89999999999998653
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.2e-08 Score=74.99 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L 62 (319)
.+.....++||+||++++.+++.+||. +|..||..++ +|+..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 445566799999999999999999996 8999999998 999999999996654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=1.2e-07 Score=72.63 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhCC----chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 67 KHGNFTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
....||.+|+++|.+++..|+. +|..||..+||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999974 799999999999999999999876544
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.46 E-value=7.9e-08 Score=96.32 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583 69 GNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lk 114 (319)
..||+||.+++++++.+||.+|..||+.+.+||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999975443
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=3.2e-08 Score=75.48 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=44.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC--CCCcccccccccCcccccccccccccccC
Q 045583 10 ANVKRGPWSPEEDATLKRYVETHGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLR 63 (319)
Q Consensus 10 p~lkkg~WT~EEDe~L~~lV~k~G~--~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~ 63 (319)
+..+++.||+|||++|.+++.+|+. .+.|..||+.+| |+.++|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 4456789999999999999999973 247999999975 999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.30 E-value=5.7e-07 Score=65.92 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHhhh--------CC-chhhhcc-cCCCCCHHHHHHHHHHHhh
Q 045583 68 HGNFTEDEDHVICTLYSQI--------GS-RWSIIAS-RLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~--------G~-kWs~IA~-~lpgRT~~qcKnRW~~~lk 114 (319)
+.+||+|||.+|++.|.++ |+ -|..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 55 4999999 8999999999999987764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.26 E-value=1.5e-07 Score=69.01 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=42.3
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCcccccc-cccCcccccccccccccccC
Q 045583 14 RGPWSPEEDATLKRYVETH--------GTGGNWIALPQ-KAGLKRCGKSCRLRWLNYLR 63 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~--------G~~~~W~~IA~-~lg~~Rt~kQCr~Rw~n~L~ 63 (319)
|.+||+|||+.|+++|.+| |. .-|..+++ .++ .++..+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 43 36999999 676 9999999999999875
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.19 E-value=3.2e-07 Score=70.20 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCCcccccccccCcccccccccccccccCC
Q 045583 14 RGPWSPEEDATLKRYVETHGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~G~--~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p 64 (319)
...||+||+++|.+++..|+. .++|..||..++ +|+..+|+.||...++-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 467999999999999999964 257999999999 89999999999887653
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.15 E-value=5.9e-07 Score=82.03 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=46.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccC
Q 045583 10 ANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR 63 (319)
Q Consensus 10 p~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~ 63 (319)
......+||+||++++++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3455789999999999999999997 8999999999 9999999999988764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=4.4e-06 Score=61.73 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=44.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 045583 63 RPDIKHGNFTEDEDHVICTLYSQIGSRWSIIAS-RLPGRTDNDVKNYWNT 111 (319)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcKnRW~~ 111 (319)
.|.++...||+||.++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 467888999999999999999999999999999 5899999999998853
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.09 E-value=1.2e-06 Score=67.00 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhhCC----chhhhcccCCCCCHHHHHHHH
Q 045583 68 HGNFTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYW 109 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcKnRW 109 (319)
...||.||+++|.+++..|+. +|.+||..|||||..+|+.+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 457999999999999999975 899999999999999999988
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.98 E-value=5.4e-06 Score=65.66 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHhhhCC---chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 70 NFTEDEDHVICTLYSQIGS---RWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.||.|||+.|+...++-|. .|..||+.|.+|+.+||++||+.+++=
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999987 899999999999999999999887754
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.12 E-value=1.6e-06 Score=65.26 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHhhhCC---chhhhcccCCCCCHHHHHHHHHHHhh
Q 045583 70 NFTEDEDHVICTLYSQIGS---RWSIIASRLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcKnRW~~~lk 114 (319)
.||.|||+.|+..+.+-|. .|..||+.| +||++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999998 899999999 9999999999987764
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.84 E-value=2.7e-05 Score=61.99 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=51.8
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCC-----CCCHHHHHHHHHHHhhhHHhcC
Q 045583 56 LRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLP-----GRTDNDVKNYWNTKLKKKLLAG 120 (319)
Q Consensus 56 ~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lp-----gRT~~qcKnRW~~~lkkkl~~~ 120 (319)
+.|..+|. ...||.||...|++|+++|+-+|..|+.++. .||-.++|.||..+.++.+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555554 3689999999999999999999999999873 7999999999999888876644
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.80 E-value=3.1e-05 Score=73.64 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccc-------cc-----------------------------
Q 045583 15 GPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRL-------RW----------------------------- 58 (319)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~-------Rw----------------------------- 58 (319)
+.||..+...++.++.+||. .+|..||..++ +++...++. ||
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999998 69999999997 777644432 11
Q ss_pred ------------cc--ccCCCCCCCCCCHHHHHHHHHHHhhhCC----chhhhcc------------cCCCCCHHHHHHH
Q 045583 59 ------------LN--YLRPDIKHGNFTEDEDHVICTLYSQIGS----RWSIIAS------------RLPGRTDNDVKNY 108 (319)
Q Consensus 59 ------------~n--~L~p~lkrg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~lpgRT~~qcKnR 108 (319)
.. ...+..+...||++||..|+-.+.+||- .|..|.. .+..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 00 0012234568999999999999999996 6999962 3467999999999
Q ss_pred HHHHhhh
Q 045583 109 WNTKLKK 115 (319)
Q Consensus 109 W~~~lkk 115 (319)
.+++++-
T Consensus 269 c~tLi~~ 275 (304)
T 1ofc_X 269 CNTLITL 275 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888754
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.77 E-value=4.5e-06 Score=63.75 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCCcccccccccCcccccccccccc
Q 045583 14 RGPWSPEEDATLKRYVETHGT--GGNWIALPQKAGLKRCGKSCRLRWL 59 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~G~--~~~W~~IA~~lg~~Rt~kQCr~Rw~ 59 (319)
...||.||+++|.+++.+|+. ...|..||+.++ +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 457999999999999999954 347999999998 899999999985
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.60 E-value=7e-05 Score=59.55 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHH
Q 045583 68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNT 111 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~ 111 (319)
...||+||.++..++...||.+|..||..||+||..+|-.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998854
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.57 E-value=0.00011 Score=55.41 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhhCCchhhhcc-cCCCCCHHHHHHHHH
Q 045583 68 HGNFTEDEDHVICTLYSQIGSRWSIIAS-RLPGRTDNDVKNYWN 110 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcKnRW~ 110 (319)
...||+||.++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999999986
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=6e-05 Score=55.61 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=44.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccc-cccCccccccccccccc
Q 045583 8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQ-KAGLKRCGKSCRLRWLN 60 (319)
Q Consensus 8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~-~lg~~Rt~kQCr~Rw~n 60 (319)
..|.++...||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 367888999999999999999999998 8999998 577 9999999887654
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.22 E-value=9.4e-05 Score=58.94 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=42.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCccccccccc----CcccccccccccccccC
Q 045583 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG----LKRCGKSCRLRWLNYLR 63 (319)
Q Consensus 13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg----~~Rt~kQCr~Rw~n~L~ 63 (319)
....||.||++.|++++++|+. .|..|+.+.. .+|+..++++||..+.+
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 4489999999999999999998 8999999883 37999999999977543
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.17 E-value=0.00013 Score=73.22 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=44.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583 11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62 (319)
Q Consensus 11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L 62 (319)
.....+||.||-+++++++.+||. +|..||+.++ +|+..||+..|.++.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345789999999999999999997 8999999999 999999999887653
No 83
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.09 E-value=0.00014 Score=57.61 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=45.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC-CCCcccccccccCcccccccccccccc
Q 045583 9 KANVKRGPWSPEEDATLKRYVETHGT-GGNWIALPQKAGLKRCGKSCRLRWLNY 61 (319)
Q Consensus 9 Kp~lkkg~WT~EEDe~L~~lV~k~G~-~~~W~~IA~~lg~~Rt~kQCr~Rw~n~ 61 (319)
+++-+-..||.|||..|+..+++-|. ...|..||+.++ +|++.|+++|+...
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 45566678999999999999999986 347999999998 99999999999764
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.07 E-value=0.00027 Score=54.61 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHhhhC----------CchhhhcccCC----CCCHHHHHHHHHHHhhhH
Q 045583 68 HGNFTEDEDHVICTLYSQIG----------SRWSIIASRLP----GRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G----------~kWs~IA~~lp----gRT~~qcKnRW~~~lkkk 116 (319)
...||.+|..+||++..++. ..|..||..|. .||+.||+.+|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999987642 15999999873 699999999998776653
No 85
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.76 E-value=0.00024 Score=53.46 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC-CCCcccccccccCcccccccccccccccC
Q 045583 10 ANVKRGPWSPEEDATLKRYVETHGT-GGNWIALPQKAGLKRCGKSCRLRWLNYLR 63 (319)
Q Consensus 10 p~lkkg~WT~EEDe~L~~lV~k~G~-~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~ 63 (319)
.+-.--.||.|||..|+..+++-|. ...|..||+.+ +|++.|+..||...++
T Consensus 10 ~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 10 KGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 3444567999999999999999986 33699999887 5999999999987653
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.56 E-value=0.00068 Score=53.82 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccc
Q 045583 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n 60 (319)
...||+||.++..+++..||. +|..|+..++ +|+..+|.+-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 467999999999999999997 8999999998 9999999886643
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.49 E-value=0.00088 Score=50.35 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=39.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCcccccc-cccCccccccccccccc
Q 045583 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQ-KAGLKRCGKSCRLRWLN 60 (319)
Q Consensus 13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~-~lg~~Rt~kQCr~Rw~n 60 (319)
....||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 4568999999999999999998 8999998 587 9999999887653
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.44 E-value=0.0069 Score=58.99 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccc---------------------------------------
Q 045583 15 GPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCR--------------------------------------- 55 (319)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr--------------------------------------- 55 (319)
+.||.-+=..++.++.+||. .+-..||..++.+++...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 68999999885345543222
Q ss_pred ---------cccccc--cCCCC--CCCCCCHHHHHHHHHHHhhhCC----chhhhccc------------CCCCCHHHHH
Q 045583 56 ---------LRWLNY--LRPDI--KHGNFTEDEDHVICTLYSQIGS----RWSIIASR------------LPGRTDNDVK 106 (319)
Q Consensus 56 ---------~Rw~n~--L~p~l--krg~WT~EED~~Ll~lv~~~G~----kWs~IA~~------------lpgRT~~qcK 106 (319)
.-|..+ .-+.. +...||++||..|+-.+.+||- .|..|-.. |..||+.+|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 222111 00111 4557999999999999999995 59988433 3579999999
Q ss_pred HHHHHHhhh
Q 045583 107 NYWNTKLKK 115 (319)
Q Consensus 107 nRW~~~lkk 115 (319)
.|.+.+++-
T Consensus 283 rRc~tLi~~ 291 (374)
T 2y9y_A 283 RRGNTLLQC 291 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988864
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.35 E-value=0.00024 Score=54.90 Aligned_cols=51 Identities=22% Similarity=0.515 Sum_probs=40.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhC------C--CCCcccccccc---cCcccccccccccccccC
Q 045583 13 KRGPWSPEEDATLKRYVETHG------T--GGNWIALPQKA---GLKRCGKSCRLRWLNYLR 63 (319)
Q Consensus 13 kkg~WT~EEDe~L~~lV~k~G------~--~~~W~~IA~~l---g~~Rt~kQCr~Rw~n~L~ 63 (319)
+...||.+|-..|++++...- . ...|..||..| |..|++.||+.+|.++.+
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999997531 1 12599999875 468999999999988653
No 90
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.46 E-value=0.012 Score=46.75 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=40.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc----Cccccccccccccccc
Q 045583 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG----LKRCGKSCRLRWLNYL 62 (319)
Q Consensus 12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg----~~Rt~kQCr~Rw~n~L 62 (319)
++...||.||...|.+++++|.- .|..|+.+.. ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999997 8999998764 2688888888887654
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.10 E-value=0.045 Score=48.23 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=31.5
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccc
Q 045583 5 PCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQ 43 (319)
Q Consensus 5 ~cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~ 43 (319)
|++.++.-....||.+||..|+..|.+||. ++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~-g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGY-GSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCc-CcHHHHHh
Confidence 455566656677999999999999999999 69999854
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.60 E-value=0.13 Score=38.13 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCc---hhhhcccC--CCCCHHHHHHHHHHHh
Q 045583 67 KHGNFTEDEDHVICTLYSQIGSR---WSIIASRL--PGRTDNDVKNYWNTKL 113 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l--pgRT~~qcKnRW~~~l 113 (319)
.+-.||+|..+..++++.++|.. |..|.+.| +|.|..+|+.|...+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999964 67888775 7999999999976543
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.80 E-value=0.25 Score=46.80 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhh
Q 045583 69 GNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lk 114 (319)
+.||..+...++.++.+||. .|..||..|+|+|..+|+.++.....
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 47999999999999999998 79999999999999999887655443
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.79 E-value=0.18 Score=44.23 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhC---Cchhhhcc--cCCCCCHHHHHHHHHHHhhh
Q 045583 67 KHGNFTEDEDHVICTLYSQIG---SRWSIIAS--RLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G---~kWs~IA~--~lpgRT~~qcKnRW~~~lkk 115 (319)
....||+.|-..|++++.+|| .+|..|+. .|.++|..+|+..+...+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 48999986 48899999999988776654
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.16 E-value=0.28 Score=36.22 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=35.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCC-CCccccccccc-Cccccccccccccc
Q 045583 11 NVKRGPWSPEEDATLKRYVETHGTG-GNWIALPQKAG-LKRCGKSCRLRWLN 60 (319)
Q Consensus 11 ~lkkg~WT~EEDe~L~~lV~k~G~~-~~W~~IA~~lg-~~Rt~kQCr~Rw~n 60 (319)
...+-.||+|.-++.+++|++.|.. ..+..|.+.|+ .+.|..+++.+.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4567889999999999999999941 12567766655 24566666655443
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.94 E-value=0.55 Score=43.71 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccc
Q 045583 15 GPWSPEEDATLKRYVETHGTGGNWIALPQ 43 (319)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~ 43 (319)
-.|+.+||..|+..|-+||. |+|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcC-CcHHHHhc
Confidence 45999999999999999999 79999954
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.20 E-value=3.5 Score=38.28 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhhCC---chhhhcc--cCCCCCHHHHHHHHHHHhh
Q 045583 68 HGNFTEDEDHVICTLYSQIGS---RWSIIAS--RLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~---kWs~IA~--~lpgRT~~qcKnRW~~~lk 114 (319)
+++||+.|-..|++.+.+||. +|..|+. .|+.++...++.-++.++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 578999999999999999994 8999965 4789999999998876653
No 98
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=72.20 E-value=12 Score=29.30 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCC------CCCCCCCCHHHHHHHHHHHhhhCCc
Q 045583 16 PWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP------DIKHGNFTEDEDHVICTLYSQIGSR 89 (319)
Q Consensus 16 ~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p------~lkrg~WT~EED~~Ll~lv~~~G~k 89 (319)
..|.++-..++.++. -|. .-.+||+.+|..| ..+ .||.+.... .-.....+++++..|+++...-.-.
T Consensus 6 ~~s~~~r~~i~~~~~-~G~--s~~~ia~~lgis~--~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LNV--SLHEMSRKISRSR--HCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCHHHHHHHHHHHH-TTC--CHHHHHHHHTCCH--HHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred cCCHHHHHHHHHHHH-cCC--CHHHHHHHHCcCH--HHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 478888888888774 465 6889999988433 222 233322211 1122357888888888773321223
Q ss_pred hhhhcccCCC--CCHHHHHHHH
Q 045583 90 WSIIASRLPG--RTDNDVKNYW 109 (319)
Q Consensus 90 Ws~IA~~lpg--RT~~qcKnRW 109 (319)
-..|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 35788877 4 5666665543
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.16 E-value=6 Score=27.42 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 71 FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 71 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
+++ .+..++.++...|-.+..||..+ |-+...|+.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 443 55566666667788999999999 99999999887665544
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=62.42 E-value=7.7 Score=27.67 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhh----hCCchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 71 FTEDEDHVICTLYSQ----IGSRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 71 WT~EED~~Ll~lv~~----~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
.++ .+..++.+... .|..|..||..+ |-+...|+.+....+++-
T Consensus 11 L~~-~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSE-REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCH-HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344 44455555554 577999999999 999999999887766553
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.53 E-value=7.9 Score=27.19 Aligned_cols=40 Identities=8% Similarity=0.119 Sum_probs=30.7
Q ss_pred HHHHHHHHHh----hhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 75 EDHVICTLYS----QIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 75 ED~~Ll~lv~----~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.+..++.+.. ..|..+..||+.+ |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4445555554 3578999999999 99999999998777655
No 102
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=58.05 E-value=30 Score=28.13 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=49.9
Q ss_pred CcCCCCHHHH--HHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC---
Q 045583 13 KRGPWSPEED--ATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG--- 87 (319)
Q Consensus 13 kkg~WT~EED--e~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G--- 87 (319)
-+.+|.+.+. +.|.+..++.|. ....++.. + +|.- +--+|..+|.+.|
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGt--pl~~~P~i-~-gk~l-----------------------DL~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGI--TMDELPLI-G-GCEL-----------------------DLACFFRLINEMGGMQ 58 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTC--CCSSCCEE-T-TEEC-----------------------CHHHHHHHHHHTTSHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCC--CCCCCCcC-C-CEec-----------------------cHHHHHHHHHHcCcHH
Confidence 3667998876 467777788887 45555433 2 2322 2235667777777
Q ss_pred -----CchhhhcccC--CCC---CHHHHHHHHHHHhhh
Q 045583 88 -----SRWSIIASRL--PGR---TDNDVKNYWNTKLKK 115 (319)
Q Consensus 88 -----~kWs~IA~~l--pgR---T~~qcKnRW~~~lkk 115 (319)
+.|..||..| |.- ....+|.+|..+|-.
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 5799999988 322 256789988877644
No 103
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=50.80 E-value=14 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 75 EDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 75 ED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.+..++.++...|-.-..||+.| |-+...|+.+....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 55666666666788899999999 99999999988665544
No 104
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=49.89 E-value=11 Score=31.25 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhcC
Q 045583 74 DEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120 (319)
Q Consensus 74 EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~ 120 (319)
+-|..|+++..+-|. .|..||+.+ |-+...|+.|+..+.+..+.++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeee
Confidence 567888888887765 799999999 9999999999988777665543
No 105
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=46.54 E-value=12 Score=32.32 Aligned_cols=25 Identities=36% Similarity=0.727 Sum_probs=19.0
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhCC
Q 045583 10 ANVKRGPWSPEEDATLK--------RYVETHGT 34 (319)
Q Consensus 10 p~lkkg~WT~EEDe~L~--------~lV~k~G~ 34 (319)
|.-.+|-||+|+|+.|. ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 44557789999999775 57788874
No 106
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=44.07 E-value=19 Score=29.27 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=24.5
Q ss_pred hCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 86 IGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 86 ~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.|-....||+.| |-+...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467899999999 99999999998776654
No 107
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=43.86 E-value=80 Score=25.39 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc------CCCCC----CCCCCHHHHHHHHHHH
Q 045583 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL------RPDIK----HGNFTEDEDHVICTLY 83 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L------~p~lk----rg~WT~EED~~Ll~lv 83 (319)
....|.|+-..++.++. -|. ...+||+.++..+ . .-.||.+.. .+... ....++++.+.|++++
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~--s~~~IA~~lgis~--~-TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 96 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV--RPCDISRQLRVSH--G-CVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYK 96 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC--CHHHHHHHHTCCS--H-HHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC--CHHHHHHHHCcCH--H-HHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34689999888888884 565 7889999988433 2 233444322 22111 2357888888888887
Q ss_pred hhh
Q 045583 84 SQI 86 (319)
Q Consensus 84 ~~~ 86 (319)
.+.
T Consensus 97 ~~~ 99 (159)
T 2k27_A 97 RQN 99 (159)
T ss_dssp HHC
T ss_pred HHC
Confidence 654
No 108
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=43.34 E-value=36 Score=32.99 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHhhhCC-chhhhcccCC-CCCHHHHHHHHHH
Q 045583 69 GNFTEDEDHVICTLYSQIGS-RWSIIASRLP-GRTDNDVKNYWNT 111 (319)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~lp-gRT~~qcKnRW~~ 111 (319)
+.||.-+=..++.++.+||. .-..||..|. |+|..+|+.+...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~v 168 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKA 168 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHH
Confidence 46999999999999999998 5899999997 9999999965543
No 109
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=41.60 E-value=34 Score=25.74 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 67 KHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
.....|+.|-+.|.-++ .|..-..||..| |-+...|+.+...+++|-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34468888877766555 688889999999 999999999998877663
No 110
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=41.30 E-value=29 Score=28.34 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=24.6
Q ss_pred hhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 85 QIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 85 ~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
..|-....||+.+ |-+...|+++....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3477899999999 99999999988766554
No 111
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.64 E-value=27 Score=25.76 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHHHHHHHHhh----hCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 75 EDHVICTLYSQ----IGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 75 ED~~Ll~lv~~----~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.+..++.+... .|-.+..||..+ |-+...|+.+-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44555555544 577999999999 99999999987666554
No 112
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=40.28 E-value=26 Score=27.48 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHH
Q 045583 72 TEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKN 107 (319)
Q Consensus 72 T~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKn 107 (319)
++.-+..|..++...|..|..+|++| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677788888999999999999999 877776644
No 113
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=40.25 E-value=37 Score=23.90 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 71 FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 71 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
+|+.|-+.| .++ ..|-.-..||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555444 444 5678899999999 89999999988766655
No 114
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.36 E-value=16 Score=29.21 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=28.0
Q ss_pred HHHHHHhhhC--------CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 78 VICTLYSQIG--------SRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 78 ~Ll~lv~~~G--------~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.|..+|.+.| +.|..||..|.--....+|..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4666677666 4799999988333378899999887754
No 115
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=37.88 E-value=9.1 Score=31.25 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHHHHHHhCC------CCCcccccccccCcccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHh
Q 045583 24 TLKRYVETHGT------GGNWIALPQKAGLKRCG----KSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYS 84 (319)
Q Consensus 24 ~L~~lV~k~G~------~~~W~~IA~~lg~~Rt~----kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~ 84 (319)
+|..+|.+.|- ...|..||..++...+. ...+..|.++|.|-- .++++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 67788888762 24799999999855433 356778888887632 378888888877664
No 116
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.15 E-value=57 Score=25.87 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHH
Q 045583 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY------LRPDIK----HGNFTEDEDHVICTLY 83 (319)
Q Consensus 14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~------L~p~lk----rg~WT~EED~~Ll~lv 83 (319)
....|.|+-..++.++. .|. ...+||+.++..+ +.-.||.+. +.+... ....++++.+.|++++
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~--s~~~iA~~lgis~---~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV--RPCDISRQLRVSH---GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC--CHHHHHHHHTCCH---HHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC--CHHHHHHHHCcCH---HHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 35789999988888884 565 6889999988433 223334332 222211 2347888888888887
Q ss_pred hhh
Q 045583 84 SQI 86 (319)
Q Consensus 84 ~~~ 86 (319)
.+.
T Consensus 104 ~~~ 106 (149)
T 1k78_A 104 RQN 106 (149)
T ss_dssp HHC
T ss_pred HhC
Confidence 654
No 117
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=35.45 E-value=38 Score=26.30 Aligned_cols=39 Identities=15% Similarity=0.357 Sum_probs=27.1
Q ss_pred HHHHHHHhhhC--------CchhhhcccCCCC-C---HHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIG--------SRWSIIASRLPGR-T---DNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G--------~kWs~IA~~lpgR-T---~~qcKnRW~~~lkk 115 (319)
-.|..+|.+.| +.|..||..|.-- + ...+|..|..+|-.
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 34666666666 4799999998322 2 46888888887754
No 118
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=35.32 E-value=1.3e+02 Score=23.20 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=54.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCcc-cccccccCcccccccccccccc----c---------CCCC--CCCCCCHHHH
Q 045583 13 KRGPWSPEEDATLKRYVETHGTGGNWI-ALPQKAGLKRCGKSCRLRWLNY----L---------RPDI--KHGNFTEDED 76 (319)
Q Consensus 13 kkg~WT~EEDe~L~~lV~k~G~~~~W~-~IA~~lg~~Rt~kQCr~Rw~n~----L---------~p~l--krg~WT~EED 76 (319)
++..+|.|+-..+++++...|. .-. .||+.+|..++ .-.+|.+. + .+.. .+..-.++-|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~--~~~~~~A~~~gvs~s---tl~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E 78 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPD--LRKGEIARRFNIPPS---TLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLE 78 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTT--SCHHHHHHHHTCCHH---HHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCC--CcHHHHHHHhCCCHH---HHHHHHhchhhhcchhhhccccchhhcccCCCCCHHHH
Confidence 4678999999999999977775 333 78988885432 22222221 1 1111 1233556678
Q ss_pred HHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
+.|++.+..... ..+| =|...|+.+...+...
T Consensus 79 ~~L~~Wi~~~~~------~g~p-vs~~~I~~kA~~i~~~ 110 (131)
T 1hlv_A 79 GLLIAWFQQIRA------AGLP-VKGIILKEKALRIAEE 110 (131)
T ss_dssp HHHHHHHHHHGG------GTCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------CCCC-CCHHHHHHHHHHHHHH
Confidence 888887765422 2333 4677777777665544
No 119
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.77 E-value=28 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhCCchhhhcccCCCCCHHHHHH
Q 045583 76 DHVICTLYSQIGSRWSIIASRLPGRTDNDVKN 107 (319)
Q Consensus 76 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKn 107 (319)
+..|..++...|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777899999999999999 777776644
No 120
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=34.68 E-value=34 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHHHhhhC--------CchhhhcccCCCC--C--HHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIG--------SRWSIIASRLPGR--T--DNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G--------~kWs~IA~~lpgR--T--~~qcKnRW~~~lkk 115 (319)
-+|..+|.+.| +.|..||..|.-- + ...+|..|..+|-.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 34667777776 4799999998221 1 56789999887655
No 121
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.08 E-value=48 Score=25.94 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 75 EDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 75 ED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.+..++.++...|-....||+.+ |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45556666666788999999999 99999999887655433
No 122
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.02 E-value=57 Score=22.38 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 69 GNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
..+|+.|-+.|.. + ..|..-..||+.+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4577777766655 4 5577889999999 89999999988766554
No 123
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=33.34 E-value=21 Score=29.04 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=28.5
Q ss_pred HHHHHHhhhC--------CchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 78 VICTLYSQIG--------SRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 78 ~Ll~lv~~~G--------~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
.|..+|.+.| +.|..||..|.--....+|..|..+|-.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 3556666665 36999999873333899999999888664
No 124
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=33.30 E-value=52 Score=21.90 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 76 DHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 76 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
+..++.+ ...|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3344555 34577888999999 99999999998776655
No 125
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.92 E-value=45 Score=24.26 Aligned_cols=43 Identities=30% Similarity=0.292 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 70 NFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.+|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 366766665554 4 5688899999999 99999999988766655
No 126
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.90 E-value=41 Score=25.22 Aligned_cols=44 Identities=27% Similarity=0.299 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 70 NFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
..|+.|-+.|.- + ..|..-..||..| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467766665555 4 6688889999999 999999999987766654
No 127
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.70 E-value=35 Score=27.25 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHH
Q 045583 66 IKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKN 107 (319)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKn 107 (319)
+-...=|++ .|..++..+|..|..+|+.| |=++.+|..
T Consensus 17 ~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 333444444 45566788999999999999 777766543
No 128
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=32.60 E-value=43 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhCCchhhhcccCCCCCHHHHHH
Q 045583 76 DHVICTLYSQIGSRWSIIASRLPGRTDNDVKN 107 (319)
Q Consensus 76 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKn 107 (319)
+..|-.++...|..|..+|++| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4455566778899999999999 777776644
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.27 E-value=38 Score=26.46 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=24.1
Q ss_pred hhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 85 QIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 85 ~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
..|-....||+.| |-+...|+++....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4477899999999 99999999988665443
No 130
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.54 E-value=42 Score=26.98 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=27.4
Q ss_pred HHHHHHHhhhC--------CchhhhcccCCC--CC--HHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIG--------SRWSIIASRLPG--RT--DNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G--------~kWs~IA~~lpg--RT--~~qcKnRW~~~lkk 115 (319)
-+|..+|.+.| ++|..|+..|.- -+ ...+|..|..+|-.
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 34666677766 479999999822 12 46889999887765
No 131
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=31.39 E-value=49 Score=27.71 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=27.5
Q ss_pred HHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
..++.+....|-....||+.| |-|...|+.+....+++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334444444577899999999 99999999887655443
No 132
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=31.27 E-value=43 Score=26.92 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHhhhC--------CchhhhcccCCCC----CHHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIG--------SRWSIIASRLPGR----TDNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G--------~kWs~IA~~lpgR----T~~qcKnRW~~~lkk 115 (319)
-+|..+|.+.| +.|..||..|.-- ....+|..|..+|..
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 34666677766 4799999998222 246889999888765
No 133
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.04 E-value=34 Score=28.68 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583 74 DEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119 (319)
Q Consensus 74 EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~ 119 (319)
+-|..|+.+..+.|. .+..||+.+ |-+...|+.|+..+.+..+.+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 456677777776665 799999999 899999999997776665554
No 134
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.61 E-value=11 Score=30.15 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC------CCCcccccccccCcccccccccccccccCC
Q 045583 24 TLKRYVETHGT------GGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64 (319)
Q Consensus 24 ~L~~lV~k~G~------~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p 64 (319)
+|..+|.+.|- ...|..||..++... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777777752 247999999998544 77888888888764
No 135
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=30.55 E-value=37 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=22.4
Q ss_pred HHHHHHhhhCCchhhhcccCCCCCHHHHHH
Q 045583 78 VICTLYSQIGSRWSIIASRLPGRTDNDVKN 107 (319)
Q Consensus 78 ~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKn 107 (319)
.|..++...|..|..+|+.| |=++.+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 45566788999999999999 777666533
No 136
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.97 E-value=40 Score=27.00 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583 74 DEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119 (319)
Q Consensus 74 EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~ 119 (319)
+-|..|+.+..+.|. .+..||+.+ |-+...|..+...+.+..+.+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 456667777766664 799999999 899999999998877665554
No 137
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=27.05 E-value=97 Score=18.79 Aligned_cols=38 Identities=8% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHH
Q 045583 70 NFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYW 109 (319)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW 109 (319)
..++++-..++.++ .-|.....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666766677665 3477889999999 88888776643
No 138
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.04 E-value=48 Score=24.39 Aligned_cols=42 Identities=29% Similarity=0.143 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583 71 FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115 (319)
Q Consensus 71 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk 115 (319)
.|+.|-+.|.- + ..|..-..||..| |-+...|+.+....+++
T Consensus 30 Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 56656555544 4 5688889999999 99999999998776655
No 139
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.54 E-value=78 Score=24.23 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583 68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKK 116 (319)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkk 116 (319)
....|+.|-+.|.-++ .|-.-.+||+.| |-+...|+.+...++++-
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4567888887765543 588889999999 899999999887766653
No 140
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.20 E-value=50 Score=26.52 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583 74 DEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119 (319)
Q Consensus 74 EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~ 119 (319)
+-|..|+.+..+.|. .+..||+.+ |-+...|..+...+.+..+.+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 345667777666664 799999999 899999999998877665554
No 141
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=25.29 E-value=64 Score=25.96 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHhhhC--------CchhhhcccC--CCC---CHHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIG--------SRWSIIASRL--PGR---TDNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G--------~kWs~IA~~l--pgR---T~~qcKnRW~~~lkk 115 (319)
-.|..+|.+.| +.|..||..| +.. ....+|..|..+|..
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 45667777776 4799999998 322 257889999888765
No 142
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=24.03 E-value=23 Score=29.47 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHHHHHHhCC------CCCcccccccccCccc----ccccccccccccCC--CCCCCCCCHHHHHHHHHHHh
Q 045583 24 TLKRYVETHGT------GGNWIALPQKAGLKRC----GKSCRLRWLNYLRP--DIKHGNFTEDEDHVICTLYS 84 (319)
Q Consensus 24 ~L~~lV~k~G~------~~~W~~IA~~lg~~Rt----~kQCr~Rw~n~L~p--~lkrg~WT~EED~~Ll~lv~ 84 (319)
+|..+|.+.|- ...|..|+..++...+ +.+++..|.++|.| ...+|.=.++|-..-++--+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~~~~ 140 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNR 140 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc
Confidence 45666666651 1379999999985442 34667788888876 23345545555444444333
No 143
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.63 E-value=29 Score=26.48 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=24.9
Q ss_pred HHHHHHhhhC--------CchhhhcccCC--C-C-CHHHHHHHHHHHhhh
Q 045583 78 VICTLYSQIG--------SRWSIIASRLP--G-R-TDNDVKNYWNTKLKK 115 (319)
Q Consensus 78 ~Ll~lv~~~G--------~kWs~IA~~lp--g-R-T~~qcKnRW~~~lkk 115 (319)
.|..+|.+.| +.|.+||..|. . - ....+|..|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3555666655 57999999872 2 1 256788888766543
No 144
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=23.13 E-value=71 Score=26.41 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=28.2
Q ss_pred HHHHHHHhhhC--------CchhhhcccC--CCC---CHHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIG--------SRWSIIASRL--PGR---TDNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G--------~kWs~IA~~l--pgR---T~~qcKnRW~~~lkk 115 (319)
-.|..+|.+.| +.|..||..| +.. ....+|..|..+|-.
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34666777776 4799999998 322 256889999888755
No 145
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.39 E-value=82 Score=24.64 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583 71 FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK 114 (319)
Q Consensus 71 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lk 114 (319)
+++ .+..++.++...|-.-..||..+ |-|...|+.+....++
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 444 44555666666788999999999 9999999988766553
No 146
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=20.93 E-value=39 Score=26.32 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHhhhC--------CchhhhcccCC--CC---CHHHHHHHHHHHhhh
Q 045583 77 HVICTLYSQIG--------SRWSIIASRLP--GR---TDNDVKNYWNTKLKK 115 (319)
Q Consensus 77 ~~Ll~lv~~~G--------~kWs~IA~~lp--gR---T~~qcKnRW~~~lkk 115 (319)
-.|..+|.+.| +.|..||..|. .. ....+|..|..+|-.
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34666677666 57999999872 21 246789999887754
No 147
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.05 E-value=69 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583 74 DEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119 (319)
Q Consensus 74 EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~ 119 (319)
+-|..|+.+..+.|. .+..||+.+ |-+...|..+...+.+.-+.+
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEE
Confidence 346667777766554 899999999 899999999998777665554
Done!