Query 045589
Match_columns 136
No_of_seqs 126 out of 643
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00050 expansin A; Provision 100.0 6E-51 1.3E-55 323.9 15.5 136 1-136 44-247 (247)
2 PLN00193 expansin-A; Provision 100.0 8.5E-51 1.9E-55 324.3 15.8 136 1-136 49-256 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 5.3E-48 1.2E-52 306.9 15.9 135 1-136 44-246 (247)
4 PLN00115 pollen allergen group 99.8 3.9E-20 8.4E-25 132.9 9.4 70 60-136 21-118 (118)
5 PF01357 Pollen_allerg_1: Poll 99.7 7E-18 1.5E-22 114.1 8.5 56 67-122 1-82 (82)
6 COG4305 Endoglucanase C-termin 99.7 4.2E-16 9E-21 118.7 10.3 112 12-127 53-216 (232)
7 PLN03024 Putative EG45-like do 99.5 3.5E-14 7.6E-19 103.1 4.7 53 1-57 35-124 (125)
8 smart00837 DPBB_1 Rare lipopro 99.3 6.3E-13 1.4E-17 90.9 2.1 40 17-56 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 98.6 2.7E-08 5.7E-13 66.0 2.4 40 17-56 1-78 (78)
10 PF07249 Cerato-platanin: Cera 94.6 0.1 2.2E-06 37.7 5.3 45 15-60 43-113 (119)
11 PRK10564 maltose regulon perip 91.1 0.99 2.1E-05 37.5 6.9 77 53-136 47-127 (303)
12 PF00967 Barwin: Barwin family 83.9 0.64 1.4E-05 33.5 1.5 36 26-61 55-119 (119)
13 PF10417 1-cysPrx_C: C-termina 76.9 1.3 2.8E-05 25.8 1.0 11 119-129 10-20 (40)
14 PF07148 MalM: Maltose operon 71.3 8.3 0.00018 28.2 4.2 48 87-134 2-52 (135)
15 PF03100 CcmE: CcmE; InterPro 67.6 9 0.00019 27.6 3.7 32 99-130 69-101 (131)
16 PF01333 Apocytochr_F_C: Apocy 65.0 16 0.00035 26.3 4.5 40 84-126 6-45 (118)
17 PRK13159 cytochrome c-type bio 64.4 12 0.00026 28.2 4.0 28 102-129 73-101 (155)
18 PF08770 SoxZ: Sulphur oxidati 62.8 41 0.0009 23.2 6.2 54 51-118 37-97 (100)
19 PRK13254 cytochrome c-type bio 61.2 13 0.00029 27.6 3.7 31 99-129 69-100 (148)
20 PRK13150 cytochrome c-type bio 59.7 14 0.00031 27.9 3.7 29 102-130 79-108 (159)
21 PF12690 BsuPI: Intracellular 57.1 40 0.00086 22.3 5.1 14 110-123 57-70 (82)
22 PRK13165 cytochrome c-type bio 52.5 21 0.00045 27.0 3.5 28 102-129 79-107 (160)
23 TIGR02588 conserved hypothetic 45.3 1.1E+02 0.0023 22.2 6.1 25 73-98 48-72 (122)
24 KOG0852 Alkyl hydroperoxide re 45.0 7.8 0.00017 30.1 0.2 11 119-129 168-178 (196)
25 COG2351 Transthyretin-like pro 39.9 1.5E+02 0.0032 21.6 7.6 77 50-126 9-119 (124)
26 PRK13701 psiB plasmid SOS inhi 39.9 80 0.0017 23.5 4.8 35 50-87 58-96 (144)
27 PF13670 PepSY_2: Peptidase pr 39.8 84 0.0018 20.3 4.6 27 90-117 44-70 (83)
28 cd03003 PDI_a_ERdj5_N PDIa fam 39.5 20 0.00042 23.6 1.5 47 28-77 27-76 (101)
29 COG1139 Uncharacterized conser 35.9 14 0.0003 32.4 0.3 19 29-47 311-329 (459)
30 TIGR01941 nqrF NADH:ubiquinone 35.9 1.2E+02 0.0027 25.5 6.1 42 58-99 105-152 (405)
31 cd03006 PDI_a_EFP1_N PDIa fami 34.8 25 0.00054 24.5 1.5 48 28-78 38-89 (113)
32 cd03005 PDI_a_ERp46 PDIa famil 33.8 26 0.00055 22.6 1.3 48 28-76 25-76 (102)
33 PF05899 Cupin_3: Protein of u 32.9 52 0.0011 21.0 2.7 23 104-126 35-61 (74)
34 PRK02693 apocytochrome f; Revi 32.8 1E+02 0.0022 25.6 4.9 40 84-126 200-239 (312)
35 cd03004 PDI_a_ERdj5_C PDIa fam 31.4 21 0.00045 23.5 0.6 45 29-76 29-76 (104)
36 cd05841 BS69_related The PWWP 27.3 70 0.0015 21.5 2.6 25 59-83 4-29 (83)
37 COG2332 CcmE Cytochrome c-type 26.6 1E+02 0.0022 23.3 3.5 43 89-131 58-103 (153)
38 smart00725 NEAT NEAr Transport 26.4 2.4E+02 0.0051 19.9 6.6 18 67-84 41-58 (123)
39 cd02994 PDI_a_TMX PDIa family, 26.2 44 0.00096 21.7 1.5 48 28-77 25-75 (101)
40 TIGR02866 CoxB cytochrome c ox 25.4 2.4E+02 0.0053 21.4 5.7 44 65-111 89-135 (201)
41 COG3450 Predicted enzyme of th 25.2 99 0.0022 22.1 3.2 25 102-126 71-99 (116)
42 PHA02840 hypothetical protein; 25.2 68 0.0015 21.5 2.2 15 102-116 5-19 (82)
43 TIGR03481 HpnM hopanoid biosyn 24.8 2.2E+02 0.0047 21.8 5.3 40 91-131 127-169 (198)
44 PF00085 Thioredoxin: Thioredo 23.9 33 0.00071 21.9 0.5 45 29-76 27-74 (103)
45 PF08940 DUF1918: Domain of un 23.4 57 0.0012 20.6 1.5 25 94-118 26-52 (58)
46 PF10648 Gmad2: Immunoglobulin 22.8 2E+02 0.0044 19.2 4.3 14 102-115 30-43 (88)
47 PRK05464 Na(+)-translocating N 22.7 2.3E+02 0.005 23.9 5.5 42 58-99 109-156 (409)
48 PRK15000 peroxidase; Provision 21.9 42 0.0009 25.7 0.8 12 119-130 169-180 (200)
49 PF04060 FeS: Putative Fe-S cl 21.8 49 0.0011 18.4 0.9 16 28-43 4-20 (35)
50 PF08482 HrpB_C: ATP-dependent 21.7 1.5E+02 0.0033 21.7 3.7 47 80-126 52-110 (133)
51 PF05494 Tol_Tol_Ttg2: Toluene 21.7 2.2E+02 0.0048 20.7 4.7 31 91-121 104-137 (170)
52 PRK13189 peroxiredoxin; Provis 21.5 43 0.00092 26.1 0.8 11 119-129 170-180 (222)
53 PRK13190 putative peroxiredoxi 21.2 44 0.00095 25.5 0.8 11 119-129 161-171 (202)
54 PF11320 DUF3122: Protein of u 21.1 2.1E+02 0.0045 21.1 4.3 47 74-121 26-80 (134)
55 PF14697 Fer4_21: 4Fe-4S diclu 21.1 18 0.00039 22.4 -1.2 26 29-54 9-36 (59)
56 COG2372 CopC Uncharacterized p 20.7 2.6E+02 0.0056 20.4 4.7 42 74-116 58-117 (127)
57 PRK10301 hypothetical protein; 20.6 1.6E+02 0.0035 20.9 3.6 26 47-72 96-124 (124)
58 cd02956 ybbN ybbN protein fami 20.2 66 0.0014 20.6 1.4 46 28-76 21-69 (96)
59 PF11906 DUF3426: Protein of u 20.0 3.3E+02 0.0071 19.2 5.3 26 102-127 88-113 (149)
No 1
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=6e-51 Score=323.88 Aligned_cols=136 Identities=78% Similarity=1.296 Sum_probs=131.5
Q ss_pred CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc-----------------------------------------
Q 045589 1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC----------------------------------------- 38 (136)
Q Consensus 1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C----------------------------------------- 38 (136)
||||||+++.++|+.++||+|++||++|++||+|| |+|
T Consensus 44 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hF 123 (247)
T PLN00050 44 GACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHF 123 (247)
T ss_pred cccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCccc
Confidence 79999999999999999999999999999999999 986
Q ss_pred ----HHHHHhhcccCceEeEEEEEeecccCCceEEEEccccceEEEEEEeecCCCCeEEEEEeccCc-------------
Q 045589 39 ----PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRT------------- 101 (136)
Q Consensus 39 ----~aF~~ia~~~~G~i~i~yrrV~C~~~g~i~~~v~~~~~~~~v~v~n~~G~g~I~~Vevk~s~~------------- 101 (136)
+||.+||++++|+|||+||||||+++|+|+|+|++++||++++|.|++|++||++||||++++
T Consensus 124 DLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W 203 (247)
T PLN00050 124 DLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNW 203 (247)
T ss_pred ccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCcee
Confidence 899999999999999999999999999999999999999999999999999999999998642
Q ss_pred ---------eEEEEEEecCCcEEEEcceeCCCCCCCeEEecCCC
Q 045589 102 ---------ALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQF 136 (136)
Q Consensus 102 ---------pls~Rvts~~G~~vv~~~viP~~w~~G~tY~s~qf 136 (136)
|||||||+.+|+++++.||||++||||+||+++||
T Consensus 204 ~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 204 QSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 99999999999999999999999999999999998
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=8.5e-51 Score=324.27 Aligned_cols=136 Identities=63% Similarity=1.110 Sum_probs=131.4
Q ss_pred CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc-----------------------------------------
Q 045589 1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC----------------------------------------- 38 (136)
Q Consensus 1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C----------------------------------------- 38 (136)
||||||+++.++|+.++||+|++||++|++||+|| |+|
T Consensus 49 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~ 128 (256)
T PLN00193 49 GACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPL 128 (256)
T ss_pred cccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCC
Confidence 79999999999999999999999999999999999 976
Q ss_pred -------HHHHHhhcccCceEeEEEEEeecccCCceEEEEccccceEEEEEEeecCCCCeEEEEEeccCc----------
Q 045589 39 -------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRT---------- 101 (136)
Q Consensus 39 -------~aF~~ia~~~~G~i~i~yrrV~C~~~g~i~~~v~~~~~~~~v~v~n~~G~g~I~~Vevk~s~~---------- 101 (136)
+||.+||++++|+|+|+||||||+++|+|+|+|++++||++++|+|++|++||++||||++++
T Consensus 129 ~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wG 208 (256)
T PLN00193 129 QHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWG 208 (256)
T ss_pred cccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECccccc
Confidence 899999999999999999999999999999999999999999999999999999999998643
Q ss_pred ------------eEEEEEEecCCcEEEEcceeCCCCCCCeEEecC-CC
Q 045589 102 ------------ALSFKVTTSDGCLFISINVARPNWSFGQTYNGR-QF 136 (136)
Q Consensus 102 ------------pls~Rvts~~G~~vv~~~viP~~w~~G~tY~s~-qf 136 (136)
|||||||+.+|+++++.||||++||||+||+++ ||
T Consensus 209 a~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 209 ANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred ceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 899999999999999999999999999999998 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=5.3e-48 Score=306.88 Aligned_cols=135 Identities=25% Similarity=0.584 Sum_probs=122.1
Q ss_pred CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc------------------------------HHHHHhhc---
Q 045589 1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------------PIFQHIAH--- 46 (136)
Q Consensus 1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C------------------------------~aF~~ia~--- 46 (136)
||||||++..++++.++||+| +||++|++||+|| ||| +||.+||+
T Consensus 44 GACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~ 122 (247)
T PLN03023 44 GACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNM 122 (247)
T ss_pred ccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccc
Confidence 799999999999999999999 9999999999999 998 99999998
Q ss_pred ----ccCceEeEEEEEeecccCC-ceEEEEcc---ccceEEEEEEeecCCCCeEEEEEeccCc-----------------
Q 045589 47 ----YKAGIVPVRYRRVACGKSG-GIRFTING---HSYFNLVLITNVGGAGDVLSVSIKGSRT----------------- 101 (136)
Q Consensus 47 ----~~~G~i~i~yrrV~C~~~g-~i~~~v~~---~~~~~~v~v~n~~G~g~I~~Vevk~s~~----------------- 101 (136)
+++|+|||+||||||.++| +|+|+|++ +|+|++++|.|++|+|||++||||+++.
T Consensus 123 ~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~ 202 (247)
T PLN03023 123 AAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMP 202 (247)
T ss_pred cchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcC
Confidence 4789999999999999999 99999983 3779999999999999999999998532
Q ss_pred -----eEEEEEE--ecCCc-EEEEcceeCCCCCCCeEEecC-CC
Q 045589 102 -----ALSFKVT--TSDGC-LFISINVARPNWSFGQTYNGR-QF 136 (136)
Q Consensus 102 -----pls~Rvt--s~~G~-~vv~~~viP~~w~~G~tY~s~-qf 136 (136)
||+||++ +.+|+ +++++||||++||+|+||+++ ||
T Consensus 203 ~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~ 246 (247)
T PLN03023 203 NPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQL 246 (247)
T ss_pred CCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEeccccc
Confidence 6666664 44664 599999999999999999998 97
No 4
>PLN00115 pollen allergen group 3; Provisional
Probab=99.83 E-value=3.9e-20 Score=132.95 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=60.0
Q ss_pred ecccCCceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc-------------------------eEEEEEEecCC
Q 045589 60 ACGKSGGIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT-------------------------ALSFKVTTSDG 112 (136)
Q Consensus 60 ~C~~~g~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~-------------------------pls~Rvts~~G 112 (136)
+|.. +|+|+|+ +|++|+.+++ | +||.+||||+++. |||||+|+++|
T Consensus 21 ~~g~--~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~~~G 93 (118)
T PLN00115 21 SCAT--EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLVKGG 93 (118)
T ss_pred hcCC--ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEEeCC
Confidence 4742 9999998 4588886654 3 4799999998632 99999999999
Q ss_pred cEEEEcceeCCCCCCCeEEecC-CC
Q 045589 113 CLFISINVARPNWSFGQTYNGR-QF 136 (136)
Q Consensus 113 ~~vv~~~viP~~w~~G~tY~s~-qf 136 (136)
++++++||||++||||+||+++ ||
T Consensus 94 ~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 94 GYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CEEEECceECCCCCCCCEEeccccC
Confidence 9999999999999999999999 97
No 5
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.75 E-value=7e-18 Score=114.11 Aligned_cols=56 Identities=43% Similarity=0.745 Sum_probs=48.1
Q ss_pred eEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc-----------------------eEEEEEEecC-CcEEEEcce
Q 045589 67 IRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT-----------------------ALSFKVTTSD-GCLFISINV 120 (136)
Q Consensus 67 i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~-----------------------pls~Rvts~~-G~~vv~~~v 120 (136)
|+|+|+ |++||++++|.|++|+|||++||||++++ ||+||||+.+ |++++++||
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~~nV 80 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVADNV 80 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEEecc
Confidence 689998 46999999999999999999999996543 9999999966 999999999
Q ss_pred eC
Q 045589 121 AR 122 (136)
Q Consensus 121 iP 122 (136)
||
T Consensus 81 iP 82 (82)
T PF01357_consen 81 IP 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 99
No 6
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4.2e-16 Score=118.71 Aligned_cols=112 Identities=20% Similarity=0.310 Sum_probs=96.4
Q ss_pred CCCceeeEecccccCCC----Ccccccc-ccc-------------------------HHHHHhhcccCceEeEEEEEeec
Q 045589 12 GYGTSSAALSTALFNSG----VTCGVCL-IKC-------------------------PIFQHIAHYKAGIVPVRYRRVAC 61 (136)
Q Consensus 12 ~~~~~~aA~~~~~f~~g----~~CG~C~-v~C-------------------------~aF~~ia~~~~G~i~i~yrrV~C 61 (136)
+...-+.||+++.-|=| +.-|+-. |+- +||.+|++...|+|||+||.|+-
T Consensus 53 ~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGPKG~TTVYVTDlYPegasGaLDLSpNAFakIGnm~qGrIpvqWrvv~a 132 (232)
T COG4305 53 PSDMEITALNPAQLNLGGIPAAMAGAYLRVQGPKGKTTVYVTDLYPEGASGALDLSPNAFAKIGNMKQGRIPVQWRVVKA 132 (232)
T ss_pred CCcceeeecCHHHcccCCchhhhccceEEEECCCCceEEEEecccccccccccccChHHHhhhcchhcCccceeEEEecc
Confidence 44567889998877744 6677777 752 99999999999999999999999
Q ss_pred ccCCceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc--------------------eEEEEEEecCCcEEEEcc
Q 045589 62 GKSGGIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT--------------------ALSFKVTTSDGCLFISIN 119 (136)
Q Consensus 62 ~~~g~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~--------------------pls~Rvts~~G~~vv~~~ 119 (136)
+.+||+.++|| |+.||.+++|+||. -+|.++|+.+.+. ||++|+|++.|+.++ |
T Consensus 133 PvtGN~~YRiKeGSs~WWAAIQVRnH~--yPV~KlE~~qdg~WinlpK~dYNhFVgT~LG~~pL~~RmTDIRG~~l~--D 208 (232)
T COG4305 133 PVTGNFTYRIKEGSSRWWAAIQVRNHK--YPVMKLEYEQDGKWINLPKMDYNHFVGTNLGTGPLKVRMTDIRGKVLK--D 208 (232)
T ss_pred cccccEEEEEecCCccceeeeeeeccc--CceEEEEEecCCeEeeccccccceeeccccCCCceEEEEeecccceee--c
Confidence 99999999998 57899999999998 7999999987653 999999999999988 7
Q ss_pred eeCCCCCC
Q 045589 120 VARPNWSF 127 (136)
Q Consensus 120 viP~~w~~ 127 (136)
-+|+--|-
T Consensus 209 tlP~Lpk~ 216 (232)
T COG4305 209 TLPKLPKS 216 (232)
T ss_pred cccccccc
Confidence 77765554
No 7
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.48 E-value=3.5e-14 Score=103.10 Aligned_cols=53 Identities=36% Similarity=0.681 Sum_probs=47.3
Q ss_pred CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc------------------------------------HHHHH
Q 045589 1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------------------PIFQH 43 (136)
Q Consensus 1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C------------------------------------~aF~~ 43 (136)
||| |++ .+++.++||+|++||++|++||+|| |+| +||.+
T Consensus 35 gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~ 110 (125)
T PLN03024 35 SAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQ 110 (125)
T ss_pred ccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHH
Confidence 689 554 4578899999999999999999999 973 89999
Q ss_pred hhcccCceEeEEEE
Q 045589 44 IAHYKAGIVPVRYR 57 (136)
Q Consensus 44 ia~~~~G~i~i~yr 57 (136)
||++++|+|+|+|.
T Consensus 111 iA~~~aG~v~V~y~ 124 (125)
T PLN03024 111 IANPVAGIINIDYI 124 (125)
T ss_pred hcCccCCEEEEEEe
Confidence 99999999999996
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.32 E-value=6.3e-13 Score=90.94 Aligned_cols=40 Identities=70% Similarity=1.312 Sum_probs=35.7
Q ss_pred eeEecccccCCCCcccccc-ccc----------------------------------------------HHHHHhhcccC
Q 045589 17 SAALSTALFNSGVTCGVCL-IKC----------------------------------------------PIFQHIAHYKA 49 (136)
Q Consensus 17 ~aA~~~~~f~~g~~CG~C~-v~C----------------------------------------------~aF~~ia~~~~ 49 (136)
+||+|++||++|++||+|| |+| +||.+||++++
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 5899999999999999999 985 78888888888
Q ss_pred ceEeEEE
Q 045589 50 GIVPVRY 56 (136)
Q Consensus 50 G~i~i~y 56 (136)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 8888876
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=98.59 E-value=2.7e-08 Score=65.99 Aligned_cols=40 Identities=35% Similarity=0.864 Sum_probs=33.8
Q ss_pred eeEecccccCCCCcccccc-ccc-------------------------------------HHHHHhhcccCceEeEEE
Q 045589 17 SAALSTALFNSGVTCGVCL-IKC-------------------------------------PIFQHIAHYKAGIVPVRY 56 (136)
Q Consensus 17 ~aA~~~~~f~~g~~CG~C~-v~C-------------------------------------~aF~~ia~~~~G~i~i~y 56 (136)
+||++..+|++|.+||+|| ++| .||.+||.++.|+++|+|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~~~G~i~V~w 78 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADPDAGVIPVEW 78 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBSTTCSSEEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCCCceEEEEEC
Confidence 6899999999999999999 754 889999888889998887
No 10
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=94.61 E-value=0.1 Score=37.72 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=28.3
Q ss_pred ceeeEecc-cccCCCCcccccc-ccc---------------------HHHHHhhcc---cCceEeEEEEEee
Q 045589 15 TSSAALST-ALFNSGVTCGVCL-IKC---------------------PIFQHIAHY---KAGIVPVRYRRVA 60 (136)
Q Consensus 15 ~~~aA~~~-~~f~~g~~CG~C~-v~C---------------------~aF~~ia~~---~~G~i~i~yrrV~ 60 (136)
.++++... +-| +...||.|+ ++= +||..|.+- ..|.|+++|++|+
T Consensus 43 p~IGg~~~V~gW-nS~~CGtC~~lty~g~si~vlaID~a~~gfnis~~A~n~LT~g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 43 PYIGGAPAVAGW-NSPNCGTCWKLTYNGRSIYVLAIDHAGGGFNISLDAMNDLTNGQAVELGRVDATYTQVD 113 (119)
T ss_dssp TSEEEETT--ST-T-TTTT-EEEEEETTEEEEEEEEEE-SSSEEE-HHHHHHHHTS-CCCC-EEE-EEEEE-
T ss_pred CeeccccccccC-CCCCCCCeEEEEECCeEEEEEEEecCCCcccchHHHHHHhcCCcccceeEEEEEEEEcC
Confidence 35555553 345 558999999 862 888888652 5699999999985
No 11
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=91.10 E-value=0.99 Score=37.47 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=59.1
Q ss_pred eEEEEEeecccCCceEEEEc-cccceEEEEEEeecCCCCeEEEEEeccCceEEEEEEe-cCCcEEEEcc--eeCCCCCCC
Q 045589 53 PVRYRRVACGKSGGIRFTIN-GHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTT-SDGCLFISIN--VARPNWSFG 128 (136)
Q Consensus 53 ~i~yrrV~C~~~g~i~~~v~-~~~~~~~v~v~n~~G~g~I~~Vevk~s~~pls~Rvts-~~G~~vv~~~--viP~~w~~G 128 (136)
.+.|..+. .+..+.|.++ +++.+ ...+|.+.|.+.+|-....+|+|+|+| ...+.+-+.+ |+-++|++=
T Consensus 47 ~l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan~G~l~i~LsS~v~~~~VfaPnVlvLD~~~~~~ 119 (303)
T PRK10564 47 QLTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPANIGELTLTLSSLVNDKSVFAPNVLVLDQNMRPA 119 (303)
T ss_pred cCCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccccccEEEEEEEEecCCcEEeceEEEEcCCCCEE
Confidence 57787765 4468899998 56654 345677889999999877799999999 3334677766 778999999
Q ss_pred eEEecCCC
Q 045589 129 QTYNGRQF 136 (136)
Q Consensus 129 ~tY~s~qf 136 (136)
.+|.+.+|
T Consensus 120 ~~y~s~~F 127 (303)
T PRK10564 120 AFYPSSYF 127 (303)
T ss_pred EEecccce
Confidence 99988755
No 12
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=83.86 E-value=0.64 Score=33.47 Aligned_cols=36 Identities=33% Similarity=0.748 Sum_probs=25.1
Q ss_pred CCCCcccccc-cc---------------c---------HHHHHhhcc----cCceEeEEEEEeec
Q 045589 26 NSGVTCGVCL-IK---------------C---------PIFQHIAHY----KAGIVPVRYRRVAC 61 (136)
Q Consensus 26 ~~g~~CG~C~-v~---------------C---------~aF~~ia~~----~~G~i~i~yrrV~C 61 (136)
.+-.+||.|. |+ | .+|.+|-.. ..|.+.|.|.-|.|
T Consensus 55 ~gq~~CGkClrVTNt~tga~~~~RIVDqCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 55 MGQDSCGKCLRVTNTATGAQVTVRIVDQCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp -SGGGTT-EEEEE-TTT--EEEEEEEEE-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred cCcccccceEEEEecCCCcEEEEEEEEcCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence 4458899999 95 5 899999632 56899999999998
No 13
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=76.94 E-value=1.3 Score=25.75 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=9.4
Q ss_pred ceeCCCCCCCe
Q 045589 119 NVARPNWSFGQ 129 (136)
Q Consensus 119 ~viP~~w~~G~ 129 (136)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999986
No 14
>PF07148 MalM: Maltose operon periplasmic protein precursor (MalM); InterPro: IPR010794 This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown [].; GO: 0008643 carbohydrate transport, 0042597 periplasmic space
Probab=71.30 E-value=8.3 Score=28.22 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=33.9
Q ss_pred CCCCeEEEEEeccCceEEEEEEe-cCCcEEEEcc--eeCCCCCCCeEEecC
Q 045589 87 GAGDVLSVSIKGSRTALSFKVTT-SDGCLFISIN--VARPNWSFGQTYNGR 134 (136)
Q Consensus 87 G~g~I~~Vevk~s~~pls~Rvts-~~G~~vv~~~--viP~~w~~G~tY~s~ 134 (136)
|.+.+.+.+|-.+..+|+++++| ...+.+-+.+ ++-++|++=.+|++.
T Consensus 2 ~~s~vaaf~lP~~~g~l~i~l~S~v~~~~vfaP~vliLD~~~~~~~~~~~~ 52 (135)
T PF07148_consen 2 GKSPVAAFRLPANRGSLSITLSSYVKDKSVFAPNVLILDENFQPVRTYPSS 52 (135)
T ss_pred CcccEEEEEccCCCccEEEEEEEEEcCCcEEeeeEEEECCCCCEEEEcChH
Confidence 45667788887666689999988 3366666666 567778777766654
No 15
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=67.56 E-value=9 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=19.4
Q ss_pred cCceEEEEEEecCC-cEEEEcceeCCCCCCCeE
Q 045589 99 SRTALSFKVTTSDG-CLFISINVARPNWSFGQT 130 (136)
Q Consensus 99 s~~pls~Rvts~~G-~~vv~~~viP~~w~~G~t 130 (136)
.+..++|.|||... -.+++..+.|++++.|+.
T Consensus 69 ~~~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 69 DGNTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp TSSEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CCCEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 33489999998654 567788899999988753
No 16
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=64.99 E-value=16 Score=26.28 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=30.0
Q ss_pred eecCCCCeEEEEEeccCceEEEEEEecCCcEEEEcceeCCCCC
Q 045589 84 NVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWS 126 (136)
Q Consensus 84 n~~G~g~I~~Vevk~s~~pls~Rvts~~G~~vv~~~viP~~w~ 126 (136)
|..-.|.|++++-++.+ .+.+-|++.+|+.++ +.||++-+
T Consensus 6 ~As~~G~I~~I~~~ekg-g~~vtI~~~dG~~v~--~~IP~Gpe 45 (118)
T PF01333_consen 6 NASAAGTITKITRKEKG-GYEVTIETSDGETVV--ETIPAGPE 45 (118)
T ss_dssp B-SSSEEEEEEEEETTS-EEEEEEETTTSEEEE--EEEESSS-
T ss_pred cccCCeEEEEEEEcCCC-CEEEEEECCCCCEEE--EecCCCCe
Confidence 44556789999887665 677888999998888 88888654
No 17
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=64.38 E-value=12 Score=28.16 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=22.3
Q ss_pred eEEEEEEecCC-cEEEEcceeCCCCCCCe
Q 045589 102 ALSFKVTTSDG-CLFISINVARPNWSFGQ 129 (136)
Q Consensus 102 pls~Rvts~~G-~~vv~~~viP~~w~~G~ 129 (136)
.++|+|||... -.|.+..++|+.|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 68999998655 45667779999999876
No 18
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=62.76 E-value=41 Score=23.16 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=27.0
Q ss_pred eEeEEEEE-eecccCCceEEEEc-----c-ccceEEEEEEeecCCCCeEEEEEeccCceEEEEEEecCCcEEEEc
Q 045589 51 IVPVRYRR-VACGKSGGIRFTIN-----G-HSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISI 118 (136)
Q Consensus 51 ~i~i~yrr-V~C~~~g~i~~~v~-----~-~~~~~~v~v~n~~G~g~I~~Vevk~s~~pls~Rvts~~G~~vv~~ 118 (136)
.||-.|-+ +.|.+.|...++++ | |||+ .+.+.... ++ +|+++.+|++|+.-.+.
T Consensus 37 ~iPa~~I~~v~v~~ng~~v~~~~~~~siS~NP~l-~F~~~~~~------------~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 37 YIPAHFIEEVEVTYNGKPVFRADWGPSISENPYL-RFSFKGKK------------SG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp BB--B-EEEEEEEETTEEEEEEEE-TTB-SS-EE-EEEEEESS------------SE-EEEEEEEETTS-EEEEE
T ss_pred CCChHheEEEEEEECCEEEEEEEeCCcccCCCcE-EEEEecCC------------Cc-EEEEEEEECCCCEEEEE
Confidence 34544433 66766666666665 1 4432 23322211 22 78888888888766554
No 19
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=61.16 E-value=13 Score=27.58 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.3
Q ss_pred cCceEEEEEEecCC-cEEEEcceeCCCCCCCe
Q 045589 99 SRTALSFKVTTSDG-CLFISINVARPNWSFGQ 129 (136)
Q Consensus 99 s~~pls~Rvts~~G-~~vv~~~viP~~w~~G~ 129 (136)
.+..++|+|||... -.++++.++|++++-|+
T Consensus 69 ~~~~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~ 100 (148)
T PRK13254 69 DGLTVRFVVTDGNATVPVVYTGILPDLFREGQ 100 (148)
T ss_pred CCCEEEEEEEeCCeEEEEEECCCCCccccCCC
Confidence 33478999998644 45667779999999875
No 20
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=59.68 E-value=14 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=22.6
Q ss_pred eEEEEEEecCC-cEEEEcceeCCCCCCCeE
Q 045589 102 ALSFKVTTSDG-CLFISINVARPNWSFGQT 130 (136)
Q Consensus 102 pls~Rvts~~G-~~vv~~~viP~~w~~G~t 130 (136)
.++|+|||... -.++...++|+.|+.|+-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 68999998655 456677799999998763
No 21
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=57.05 E-value=40 Score=22.33 Aligned_cols=14 Identities=7% Similarity=-0.175 Sum_probs=6.6
Q ss_pred cCCcEEEEcceeCC
Q 045589 110 SDGCLFISINVARP 123 (136)
Q Consensus 110 ~~G~~vv~~~viP~ 123 (136)
..|+.+++...+|.
T Consensus 57 ~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 57 EPGESLTYEETWDL 70 (82)
T ss_dssp -TT-EEEEEEEESS
T ss_pred CCCCEEEEEEEECC
Confidence 35555555555553
No 22
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=52.54 E-value=21 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=21.8
Q ss_pred eEEEEEEecCC-cEEEEcceeCCCCCCCe
Q 045589 102 ALSFKVTTSDG-CLFISINVARPNWSFGQ 129 (136)
Q Consensus 102 pls~Rvts~~G-~~vv~~~viP~~w~~G~ 129 (136)
.++|+|||... -.++...++|+.|+.|+
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~ 107 (160)
T PRK13165 79 KVSFTLYDAGGSVTVTYEGILPDLFREGQ 107 (160)
T ss_pred EEEEEEEcCCeEEEEEEcccCCccccCCC
Confidence 67899988644 45667779999999876
No 23
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=45.27 E-value=1.1e+02 Score=22.22 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=20.7
Q ss_pred cccceEEEEEEeecCCCCeEEEEEec
Q 045589 73 GHSYFNLVLITNVGGAGDVLSVSIKG 98 (136)
Q Consensus 73 ~~~~~~~v~v~n~~G~g~I~~Vevk~ 98 (136)
+.+||.-+.|.|.+| .-.++|+|++
T Consensus 48 ~gqyyVpF~V~N~gg-~TAasV~V~g 72 (122)
T TIGR02588 48 TGQYYVPFAIHNLGG-TTAAAVNIRG 72 (122)
T ss_pred CCEEEEEEEEEeCCC-cEEEEEEEEE
Confidence 356999999999986 5589999985
No 24
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=45.04 E-value=7.8 Score=30.12 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=9.9
Q ss_pred ceeCCCCCCCe
Q 045589 119 NVARPNWSFGQ 129 (136)
Q Consensus 119 ~viP~~w~~G~ 129 (136)
+|.|++|++|.
T Consensus 168 eVcPagW~pgs 178 (196)
T KOG0852|consen 168 EVCPAGWKPGS 178 (196)
T ss_pred ccccCCCCCCC
Confidence 58999999986
No 25
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=39.92 E-value=1.5e+02 Score=21.62 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=46.0
Q ss_pred ceEeEEEEEeecccCC-ceEEEE---ccc-cceEEEEEEeecCCCCeEEEE--EeccCc---------------------
Q 045589 50 GIVPVRYRRVACGKSG-GIRFTI---NGH-SYFNLVLITNVGGAGDVLSVS--IKGSRT--------------------- 101 (136)
Q Consensus 50 G~i~i~yrrV~C~~~g-~i~~~v---~~~-~~~~~v~v~n~~G~g~I~~Ve--vk~s~~--------------------- 101 (136)
|++...---..|..|. ++++.+ +++ .-++.-...|.+|..|.--++ -...+.
T Consensus 9 G~LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf~~~g~~~~~~ 88 (124)
T COG2351 9 GRLTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDYFKSRGVQLADP 88 (124)
T ss_pred ceeeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchhhhccCcccCCC
Confidence 4443333344566655 777655 344 446777778888765511111 001111
Q ss_pred ------eEEEEEEecCCcEEEEcceeCCCCC
Q 045589 102 ------ALSFKVTTSDGCLFISINVARPNWS 126 (136)
Q Consensus 102 ------pls~Rvts~~G~~vv~~~viP~~w~ 126 (136)
|++|+|.+.++++-|.--+-|=++.
T Consensus 89 ~Fl~~V~vrF~iad~~~HYHVPLLlSPygYS 119 (124)
T COG2351 89 PFLDVVPVRFGIADVDEHYHVPLLLSPYGYS 119 (124)
T ss_pred CccceEEEEEEEcCCCCceeeeeEecCcccc
Confidence 8999999999999888777775443
No 26
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=39.86 E-value=80 Score=23.48 Aligned_cols=35 Identities=31% Similarity=0.595 Sum_probs=19.8
Q ss_pred ceEeEEEEEeecccCCceEEEEc--c--ccceEEEEEEeecC
Q 045589 50 GIVPVRYRRVACGKSGGIRFTIN--G--HSYFNLVLITNVGG 87 (136)
Q Consensus 50 G~i~i~yrrV~C~~~g~i~~~v~--~--~~~~~~v~v~n~~G 87 (136)
|-+||+.|--| -.++..+-+= | +|+|.++++ +.+|
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG 96 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGG 96 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCC
Confidence 45555555544 1234444443 2 899998887 5553
No 27
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=39.84 E-value=84 Score=20.31 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=18.5
Q ss_pred CeEEEEEeccCceEEEEEEecCCcEEEE
Q 045589 90 DVLSVSIKGSRTALSFKVTTSDGCLFIS 117 (136)
Q Consensus 90 ~I~~Vevk~s~~pls~Rvts~~G~~vv~ 117 (136)
+|.+||+...+ -+.+++.+.+|+.+..
T Consensus 44 ~v~~ve~~~~g-~yev~~~~~dG~~~ev 70 (83)
T PF13670_consen 44 QVREVEFDDDG-CYEVEARDKDGKKVEV 70 (83)
T ss_pred ceEEEEEcCCC-EEEEEEEECCCCEEEE
Confidence 78888885444 3777777777776653
No 28
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=39.53 E-value=20 Score=23.57 Aligned_cols=47 Identities=21% Similarity=0.496 Sum_probs=33.9
Q ss_pred CCcccccc-cccHHHHHhhcccCceEeEEEEEeecccCCce--EEEEccccce
Q 045589 28 GVTCGVCL-IKCPIFQHIAHYKAGIVPVRYRRVACGKSGGI--RFTINGHSYF 77 (136)
Q Consensus 28 g~~CG~C~-v~C~aF~~ia~~~~G~i~i~yrrV~C~~~g~i--~~~v~~~~~~ 77 (136)
...|+.|- .. +.|.++|+.-.+. +.+-+|.|+....+ ++.|++-|-+
T Consensus 27 a~wC~~C~~~~-p~~~~~a~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 27 SPRCSHCHDLA-PTWREFAKEMDGV--IRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CCCChHHHHhH-HHHHHHHHHhcCc--eEEEEEeCCccHHHHHHcCCCccCEE
Confidence 46799999 88 9999999876664 67788999754333 4555566643
No 29
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=35.88 E-value=14 Score=32.40 Aligned_cols=19 Identities=42% Similarity=1.228 Sum_probs=16.3
Q ss_pred CcccccccccHHHHHhhcc
Q 045589 29 VTCGVCLIKCPIFQHIAHY 47 (136)
Q Consensus 29 ~~CG~C~v~C~aF~~ia~~ 47 (136)
-.||+|+..||+|..++..
T Consensus 311 IRCGaC~n~CPvY~~iGgh 329 (459)
T COG1139 311 IRCGACLNHCPVYRHIGGH 329 (459)
T ss_pred hcchHhhhcChhhhhccCe
Confidence 4799999999999999753
No 30
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=35.86 E-value=1.2e+02 Score=25.45 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=27.2
Q ss_pred Eeeccc--CCceEEEEcc----ccceEEEEEEeecCCCCeEEEEEecc
Q 045589 58 RVACGK--SGGIRFTING----HSYFNLVLITNVGGAGDVLSVSIKGS 99 (136)
Q Consensus 58 rV~C~~--~g~i~~~v~~----~~~~~~v~v~n~~G~g~I~~Vevk~s 99 (136)
|.+|.. .+.+.+.+.. ...|.+.++.+..-..+|..+.++-.
T Consensus 105 rLaCq~~~~~d~~i~~~~~~~~~~~~~~~v~~~~~~s~~i~~l~l~~~ 152 (405)
T TIGR01941 105 RLSCQVKVKQDMSIEIPEEIFGVKKWECEVISNDNVATFIKELVLKLP 152 (405)
T ss_pred EEEeeCEECCCEEEEECccccccceeeeEEEEcccccchhheEEEecC
Confidence 567854 5688887752 34566666666555567888888753
No 31
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=34.82 E-value=25 Score=24.51 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCcccccc-cccHHHHHhhcccCceEeEEEEEeecccCCce---EEEEccccceE
Q 045589 28 GVTCGVCL-IKCPIFQHIAHYKAGIVPVRYRRVACGKSGGI---RFTINGHSYFN 78 (136)
Q Consensus 28 g~~CG~C~-v~C~aF~~ia~~~~G~i~i~yrrV~C~~~g~i---~~~v~~~~~~~ 78 (136)
+.-||.|- .. +.|.++|+...+. +.+-+|.|+....+ ++.|++-|-++
T Consensus 38 A~WC~~Ck~l~-p~~~~la~~~~~~--v~~~~Vd~d~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 38 APWDAQSQAAR-QEFEQVAQKLSDQ--VLFVAINCWWPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred CCCCHHHHHHH-HHHHHHHHHhcCC--eEEEEEECCCChHHHHHhcCCcccCEEE
Confidence 34699999 88 9999999876664 77889999865533 36677878543
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=33.81 E-value=26 Score=22.64 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=34.0
Q ss_pred CCcccccc-cccHHHHHhhcccCc-eEeEEEEEeecccCCce--EEEEccccc
Q 045589 28 GVTCGVCL-IKCPIFQHIAHYKAG-IVPVRYRRVACGKSGGI--RFTINGHSY 76 (136)
Q Consensus 28 g~~CG~C~-v~C~aF~~ia~~~~G-~i~i~yrrV~C~~~g~i--~~~v~~~~~ 76 (136)
...|+.|- .. +.|.++++...+ .-.+.+.+|.|.....+ ++.|.+-|.
T Consensus 25 a~wC~~C~~~~-p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 25 APWCGHCKRLA-PTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred CCCCHHHHHhC-HHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 45799999 88 999999877554 33577788999765544 455556664
No 33
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=32.86 E-value=52 Score=21.02 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=14.7
Q ss_pred EEEEEecCCcEEEE--cc--eeCCCCC
Q 045589 104 SFKVTTSDGCLFIS--IN--VARPNWS 126 (136)
Q Consensus 104 s~Rvts~~G~~vv~--~~--viP~~w~ 126 (136)
+++||+.+|+++.. -| ++|++|+
T Consensus 35 ~v~it~~~G~~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 35 EVTITDEDGETVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEEETTTEEEEEETTEEEEE-TTEE
T ss_pred EEEEEECCCCEEEEcCCcEEEECCCCE
Confidence 57788878855543 33 7888886
No 34
>PRK02693 apocytochrome f; Reviewed
Probab=32.81 E-value=1e+02 Score=25.64 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=27.8
Q ss_pred eecCCCCeEEEEEeccCceEEEEEEecCCcEEEEcceeCCCCC
Q 045589 84 NVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWS 126 (136)
Q Consensus 84 n~~G~g~I~~Vevk~s~~pls~Rvts~~G~~vv~~~viP~~w~ 126 (136)
|..-.|.|++++-++.+ .+.+.|++.||+.++ +.||++-+
T Consensus 200 ~as~~G~i~~I~~~e~G-g~~vtI~~~dG~~v~--~~iP~Gpe 239 (312)
T PRK02693 200 TASAAGTITSIETGEDG-GYVVTITTEDGEAVT--ETIPAGPE 239 (312)
T ss_pred cccCCcEEEEEEecCCC-ceEEEEEcCCCCEEE--EecCCCCe
Confidence 44445678888776654 467777788898877 78887653
No 35
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=31.44 E-value=21 Score=23.48 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=32.8
Q ss_pred Ccccccc-cccHHHHHhhcccCceEeEEEEEeecccCCce--EEEEccccc
Q 045589 29 VTCGVCL-IKCPIFQHIAHYKAGIVPVRYRRVACGKSGGI--RFTINGHSY 76 (136)
Q Consensus 29 ~~CG~C~-v~C~aF~~ia~~~~G~i~i~yrrV~C~~~g~i--~~~v~~~~~ 76 (136)
..|+.|- +. +.|.+++....+. +.+-+|.|+....+ ++.|++-|-
T Consensus 29 ~wC~~C~~~~-p~~~~~~~~~~~~--~~~~~vd~~~~~~~~~~~~i~~~Pt 76 (104)
T cd03004 29 PWCGPCQALL-PELRKAARALKGK--VKVGSVDCQKYESLCQQANIRAYPT 76 (104)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCC--cEEEEEECCchHHHHHHcCCCcccE
Confidence 5799999 88 9999999775554 66678889764444 456666664
No 36
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=27.34 E-value=70 Score=21.49 Aligned_cols=25 Identities=12% Similarity=0.444 Sum_probs=20.1
Q ss_pred eecccCCceEE-EEccccceEEEEEE
Q 045589 59 VACGKSGGIRF-TINGHSYFNLVLIT 83 (136)
Q Consensus 59 V~C~~~g~i~~-~v~~~~~~~~v~v~ 83 (136)
-||..++.|.+ +++|.|+|=+.++.
T Consensus 4 ~pc~~p~dLVwAK~kGyp~WPAkV~~ 29 (83)
T cd05841 4 EPCRPPHELVWAKLKGFPYWPAKVMR 29 (83)
T ss_pred cccCCCCCEEEEeCCCCCCCCEEEee
Confidence 37999997665 78899999887764
No 37
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=1e+02 Score=23.28 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=26.9
Q ss_pred CCeEEEEEeccCc--eEEEEEEecCC-cEEEEcceeCCCCCCCeEE
Q 045589 89 GDVLSVSIKGSRT--ALSFKVTTSDG-CLFISINVARPNWSFGQTY 131 (136)
Q Consensus 89 g~I~~Vevk~s~~--pls~Rvts~~G-~~vv~~~viP~~w~~G~tY 131 (136)
|-|.+..|+.+.. .++|-+||... -.|....++|+.|.-|+--
T Consensus 58 GlV~~GSv~R~~~~~~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgV 103 (153)
T COG2332 58 GLVEAGSVQRDPGSLKVSFVVTDGNKSVTVSYEGILPDLFREGQGV 103 (153)
T ss_pred eeEeeceEEecCCCcEEEEEEecCCceEEEEEeccCchhhhcCCeE
Confidence 3566677776433 45555554322 4667788999999887643
No 38
>smart00725 NEAT NEAr Transporter domain.
Probab=26.42 E-value=2.4e+02 Score=19.93 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=11.6
Q ss_pred eEEEEccccceEEEEEEe
Q 045589 67 IRFTINGHSYFNLVLITN 84 (136)
Q Consensus 67 i~~~v~~~~~~~~v~v~n 84 (136)
+.++++.+.||..+.+..
T Consensus 41 v~ltl~~s~~~~~f~i~~ 58 (123)
T smart00725 41 VTLTLNNSSFWKDFEVEV 58 (123)
T ss_pred EEEEEcCCccEEEEEEEe
Confidence 344445677888887763
No 39
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=26.23 E-value=44 Score=21.71 Aligned_cols=48 Identities=17% Similarity=0.426 Sum_probs=33.9
Q ss_pred CCcccccc-cccHHHHHhhcccCceEeEEEEEeecccCCce--EEEEccccce
Q 045589 28 GVTCGVCL-IKCPIFQHIAHYKAGIVPVRYRRVACGKSGGI--RFTINGHSYF 77 (136)
Q Consensus 28 g~~CG~C~-v~C~aF~~ia~~~~G~i~i~yrrV~C~~~g~i--~~~v~~~~~~ 77 (136)
+..|+.|. .. +.|.+++.... ...|.+-+|.|.....+ ++.|.+-|..
T Consensus 25 a~wC~~C~~~~-p~~~~l~~~~~-~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 25 APWCPACQQLQ-PEWEEFADWSD-DLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred CCCCHHHHHHh-HHHHHHHHhhc-cCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 45799999 88 99999987533 23577778999764444 4666676754
No 40
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=25.39 E-value=2.4e+02 Score=21.38 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=26.7
Q ss_pred CceEEEEccccceEEEEEEeecCCCC---eEEEEEeccCceEEEEEEecC
Q 045589 65 GGIRFTINGHSYFNLVLITNVGGAGD---VLSVSIKGSRTALSFKVTTSD 111 (136)
Q Consensus 65 g~i~~~v~~~~~~~~v~v~n~~G~g~---I~~Vevk~s~~pls~Rvts~~ 111 (136)
..+.++|.+.+||-.+. |-+++.. ..++.|.. +.|..|++||.|
T Consensus 89 ~~~~i~v~~~qw~W~f~--Y~~~~~~~~~~~~l~vp~-g~~v~~~~ts~D 135 (201)
T TIGR02866 89 DALKVKVEGHQWYWSFD--YPESRRGFTTVNELVVPA-GTPVRLQVTSKD 135 (201)
T ss_pred CCEEEEEEEEEeEEEEE--cCCcCCCccccCEEEEEc-CCEEEEEEEeCc
Confidence 47888888988776654 3332111 23344443 349999999865
No 41
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=25.24 E-value=99 Score=22.11 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=18.3
Q ss_pred eEEEEEEecCCcEEEEc--c--eeCCCCC
Q 045589 102 ALSFKVTTSDGCLFISI--N--VARPNWS 126 (136)
Q Consensus 102 pls~Rvts~~G~~vv~~--~--viP~~w~ 126 (136)
.=.+++|.++|+.+... | ++|++|+
T Consensus 71 ~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~ 99 (116)
T COG3450 71 EGRVEVTPDGGEPVEVRAGDSFVFPAGFK 99 (116)
T ss_pred eeEEEEECCCCeEEEEcCCCEEEECCCCe
Confidence 44577888888777643 3 8899987
No 42
>PHA02840 hypothetical protein; Provisional
Probab=25.20 E-value=68 Score=21.51 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=11.7
Q ss_pred eEEEEEEecCCcEEE
Q 045589 102 ALSFKVTTSDGCLFI 116 (136)
Q Consensus 102 pls~Rvts~~G~~vv 116 (136)
-|+++||+..|.+|-
T Consensus 5 ~lSiKITS~~GstIS 19 (82)
T PHA02840 5 FLSVKITSNSGNTIS 19 (82)
T ss_pred eeEEEEecCCCCEEE
Confidence 478889998887664
No 43
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=24.84 E-value=2.2e+02 Score=21.81 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=25.3
Q ss_pred eEEEEEeccC-c--eEEEEEEecCCcEEEEcceeCCCCCCCeEE
Q 045589 91 VLSVSIKGSR-T--ALSFKVTTSDGCLFISINVARPNWSFGQTY 131 (136)
Q Consensus 91 I~~Vevk~s~-~--pls~Rvts~~G~~vv~~~viP~~w~~G~tY 131 (136)
++..+|..++ . |+++|+...+|+|.+.+=+| ++=....+|
T Consensus 127 ~V~t~i~~~~g~~i~V~y~l~~~~g~WkV~DV~i-eGVSlv~ty 169 (198)
T TIGR03481 127 IVRSTIVSDGGDPVKFDYIMRQGQGKWRIVDILA-DGVSDLAVR 169 (198)
T ss_pred EEEEEEEcCCCCcEEEEEEEEecCCCeEEEEEEE-ccchHHHHH
Confidence 4445554332 2 89999998889998876655 443334444
No 44
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=23.93 E-value=33 Score=21.89 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=32.7
Q ss_pred Ccccccc-cccHHHHHhhcccCceEeEEEEEeecccCCc--eEEEEccccc
Q 045589 29 VTCGVCL-IKCPIFQHIAHYKAGIVPVRYRRVACGKSGG--IRFTINGHSY 76 (136)
Q Consensus 29 ~~CG~C~-v~C~aF~~ia~~~~G~i~i~yrrV~C~~~g~--i~~~v~~~~~ 76 (136)
..|+.|- ++ +.|.+++....+ +|.+-.|.|..... -++.|++-|.
T Consensus 27 ~~C~~C~~~~-~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt 74 (103)
T PF00085_consen 27 PWCPPCKAFK-PILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPT 74 (103)
T ss_dssp TTSHHHHHHH-HHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSE
T ss_pred CCCCcccccc-ceeccccccccc--ccccchhhhhccchhhhccCCCCCCE
Confidence 4699999 88 999999977555 88999999974322 2344455564
No 45
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=23.37 E-value=57 Score=20.64 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=14.0
Q ss_pred EEEeccCc--eEEEEEEecCCcEEEEc
Q 045589 94 VSIKGSRT--ALSFKVTTSDGCLFISI 118 (136)
Q Consensus 94 Vevk~s~~--pls~Rvts~~G~~vv~~ 118 (136)
|||++.+. |+.+|..+.+.+.+++.
T Consensus 26 veV~g~dG~PPY~VRw~D~Ghe~lv~P 52 (58)
T PF08940_consen 26 VEVRGPDGSPPYLVRWDDTGHESLVFP 52 (58)
T ss_dssp EE-S-SSS-S-EEEEETTTTEEEEE--
T ss_pred EEEECCCCCCCEEEEecCCCcEEEEeC
Confidence 45665433 99999987666777653
No 46
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=22.81 E-value=2e+02 Score=19.17 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=8.9
Q ss_pred eEEEEEEecCCcEE
Q 045589 102 ALSFKVTTSDGCLF 115 (136)
Q Consensus 102 pls~Rvts~~G~~v 115 (136)
.+++||.+.+|+.+
T Consensus 30 tv~~rv~D~~g~vl 43 (88)
T PF10648_consen 30 TVNIRVRDGHGEVL 43 (88)
T ss_pred EEEEEEEcCCCcEE
Confidence 56666666666655
No 47
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=22.75 E-value=2.3e+02 Score=23.86 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=27.7
Q ss_pred Eeeccc--CCceEEEEc----cccceEEEEEEeecCCCCeEEEEEecc
Q 045589 58 RVACGK--SGGIRFTIN----GHSYFNLVLITNVGGAGDVLSVSIKGS 99 (136)
Q Consensus 58 rV~C~~--~g~i~~~v~----~~~~~~~v~v~n~~G~g~I~~Vevk~s 99 (136)
|.+|.. .+.+.+.+. ....|.+.++.+..-..+|..+.++-.
T Consensus 109 rLaCq~~~~~d~~ie~~~~~~~~~~~~~~V~~~~~ls~~i~~l~l~~~ 156 (409)
T PRK05464 109 RLSCQVKVKQDMKIEVPEEIFGVKKWECTVISNDNVATFIKELVLKIP 156 (409)
T ss_pred EEEeeCEECCCEEEEECcccccceEEEEEEEEcccCCchhheEEEecC
Confidence 456754 457877775 234677777777666677888877653
No 48
>PRK15000 peroxidase; Provisional
Probab=21.85 E-value=42 Score=25.65 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=10.0
Q ss_pred ceeCCCCCCCeE
Q 045589 119 NVARPNWSFGQT 130 (136)
Q Consensus 119 ~viP~~w~~G~t 130 (136)
.+.|+||++|..
T Consensus 169 ~~~p~~w~~g~~ 180 (200)
T PRK15000 169 DVCPAQWEKGKE 180 (200)
T ss_pred CCcCCCCCCCCc
Confidence 588999999863
No 49
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=21.79 E-value=49 Score=18.42 Aligned_cols=16 Identities=38% Similarity=0.976 Sum_probs=10.1
Q ss_pred CCcccccc-cccHHHHH
Q 045589 28 GVTCGVCL-IKCPIFQH 43 (136)
Q Consensus 28 g~~CG~C~-v~C~aF~~ 43 (136)
+..||+|= -.|.+|++
T Consensus 4 ~~nCg~CG~~~C~~fA~ 20 (35)
T PF04060_consen 4 GTNCGACGYPTCRAFAE 20 (35)
T ss_dssp S----TTSSSSHHHHHH
T ss_pred CCcCCCCCCccHHHHHH
Confidence 56799999 99988874
No 50
>PF08482 HrpB_C: ATP-dependent helicase C-terminal; InterPro: IPR013689 This domain is found near the C terminus of bacterial ATP-dependent helicases such as HrpB.
Probab=21.73 E-value=1.5e+02 Score=21.67 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=34.5
Q ss_pred EEEEeecCCCCeEEEEEec----cC--------ceEEEEEEecCCcEEEEcceeCCCCC
Q 045589 80 VLITNVGGAGDVLSVSIKG----SR--------TALSFKVTTSDGCLFISINVARPNWS 126 (136)
Q Consensus 80 v~v~n~~G~g~I~~Vevk~----s~--------~pls~Rvts~~G~~vv~~~viP~~w~ 126 (136)
+.|.|..+.+.+.+|.|++ .. -|+.|.+.|-.|+-|-.+.=++.-|+
T Consensus 52 ~~I~Y~~~~~P~lsvrlQE~FG~~~tP~i~~Grvpl~l~LLSPa~RPiqvT~DL~~FW~ 110 (133)
T PF08482_consen 52 IRIDYSDDGPPVLSVRLQELFGLTETPRIAGGRVPLTLELLSPAGRPIQVTQDLASFWQ 110 (133)
T ss_pred EEEEECCCCCcEEEEeHHHHhCCCCCCeecCCCceeEEEEeCCCCCceeeeCCHHHHhc
Confidence 5555665555777777764 11 19999999999988888887777777
No 51
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=21.72 E-value=2.2e+02 Score=20.74 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=19.9
Q ss_pred eEEEEEeccC-c--eEEEEEEecCCcEEEEccee
Q 045589 91 VLSVSIKGSR-T--ALSFKVTTSDGCLFISINVA 121 (136)
Q Consensus 91 I~~Vevk~s~-~--pls~Rvts~~G~~vv~~~vi 121 (136)
++..+|...+ . ++.+|+...+|+|.+.+-+|
T Consensus 104 ~V~t~i~~~~g~~i~v~y~l~~~~g~Wki~Dv~i 137 (170)
T PF05494_consen 104 IVRTEIISKDGQPIPVDYRLRKKDGKWKIYDVII 137 (170)
T ss_dssp EEEEEEEET-TEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEEEEEEcCCCeEEEEEEE
Confidence 4455555443 3 78888888888887765443
No 52
>PRK13189 peroxiredoxin; Provisional
Probab=21.53 E-value=43 Score=26.07 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=9.9
Q ss_pred ceeCCCCCCCe
Q 045589 119 NVARPNWSFGQ 129 (136)
Q Consensus 119 ~viP~~w~~G~ 129 (136)
.+.|+||++|.
T Consensus 170 ~~~p~~w~~g~ 180 (222)
T PRK13189 170 VATPANWPPND 180 (222)
T ss_pred cCcCCCCCCCC
Confidence 68899999997
No 53
>PRK13190 putative peroxiredoxin; Provisional
Probab=21.24 E-value=44 Score=25.47 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=9.5
Q ss_pred ceeCCCCCCCe
Q 045589 119 NVARPNWSFGQ 129 (136)
Q Consensus 119 ~viP~~w~~G~ 129 (136)
.+.|+||++|.
T Consensus 161 ~~~p~~w~~g~ 171 (202)
T PRK13190 161 VATPANWQPGQ 171 (202)
T ss_pred CCcCCCCCcCC
Confidence 57899999985
No 54
>PF11320 DUF3122: Protein of unknown function (DUF3122); InterPro: IPR021469 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.11 E-value=2.1e+02 Score=21.07 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=33.2
Q ss_pred ccceEEEEEEeecCCCCeEEEEEeccC---c-----eEEEEEEecCCcEEEEccee
Q 045589 74 HSYFNLVLITNVGGAGDVLSVSIKGSR---T-----ALSFKVTTSDGCLFISINVA 121 (136)
Q Consensus 74 ~~~~~~v~v~n~~G~g~I~~Vevk~s~---~-----pls~Rvts~~G~~vv~~~vi 121 (136)
..-|..|+.+-... ++...+.++--| . |-.+.|++..|+++.+.|+.
T Consensus 26 g~sWQvV~fkr~~~-~~~~~i~LRLVGfPG~~~~~Hp~pL~i~~~~~~~~~a~d~~ 80 (134)
T PF11320_consen 26 GNSWQVVLFKRIKP-GQVKPINLRLVGFPGSVEFDHPQPLQITTGRGQWLLAEDVF 80 (134)
T ss_pred CCceEEEEEEecCC-CCCCceEEEEeeCCCcEEecCCCceEEEeCCCCEEecCChH
Confidence 45688887755543 567777777321 1 88888899999999997765
No 55
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=21.07 E-value=18 Score=22.39 Aligned_cols=26 Identities=35% Similarity=0.774 Sum_probs=12.4
Q ss_pred CcccccccccH--HHHHhhcccCceEeE
Q 045589 29 VTCGVCLIKCP--IFQHIAHYKAGIVPV 54 (136)
Q Consensus 29 ~~CG~C~v~C~--aF~~ia~~~~G~i~i 54 (136)
.+||.|+..|+ ++..+.....+.+++
T Consensus 9 i~Cg~C~~~Cp~~~~~~i~~~~~~~~~v 36 (59)
T PF14697_consen 9 IGCGKCVRACPDGAIDAIEVDEGKKVPV 36 (59)
T ss_dssp ---SCCCHHCCCCS-S-ECCTTTTSSEC
T ss_pred cChhhHHhHcCccceeeEEecCCeeEEe
Confidence 57999998883 566664333343333
No 56
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=20.69 E-value=2.6e+02 Score=20.39 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred ccceEEEEEEeecCCCCe------------EEEEEec-----cCc-eEEEEEEecCCcEEE
Q 045589 74 HSYFNLVLITNVGGAGDV------------LSVSIKG-----SRT-ALSFKVTTSDGCLFI 116 (136)
Q Consensus 74 ~~~~~~v~v~n~~G~g~I------------~~Vevk~-----s~~-pls~Rvts~~G~~vv 116 (136)
.+.|..+.+.+.+|. ++ ..+||.- .+. -++.|+++.||+.+.
T Consensus 58 e~~fs~~~l~~~d~~-~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~ 117 (127)
T COG2372 58 EPGFSGAKLTGPDGE-EVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVK 117 (127)
T ss_pred CCCcceeEEECCCCC-ccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEecCCcEec
Confidence 567777888777652 12 1233321 111 889999999997664
No 57
>PRK10301 hypothetical protein; Provisional
Probab=20.62 E-value=1.6e+02 Score=20.91 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred ccCceEeEEEEEeecc---cCCceEEEEc
Q 045589 47 YKAGIVPVRYRRVACG---KSGGIRFTIN 72 (136)
Q Consensus 47 ~~~G~i~i~yrrV~C~---~~g~i~~~v~ 72 (136)
...|.+-|+||-++=+ ..|.++|+|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 3679999999998874 3567888775
No 58
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=20.16 E-value=66 Score=20.56 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCcccccc-cccHHHHHhhcccCceEeEEEEEeecccCCce--EEEEccccc
Q 045589 28 GVTCGVCL-IKCPIFQHIAHYKAGIVPVRYRRVACGKSGGI--RFTINGHSY 76 (136)
Q Consensus 28 g~~CG~C~-v~C~aF~~ia~~~~G~i~i~yrrV~C~~~g~i--~~~v~~~~~ 76 (136)
...|+.|. .. +.|.+++....+. +.+-+|.|+....+ ++.|.+-|.
T Consensus 21 a~wC~~C~~~~-~~~~~~~~~~~~~--~~~~~vd~~~~~~l~~~~~i~~~Pt 69 (96)
T cd02956 21 APRSPPSKELL-PLLERLAEEYQGQ--FVLAKVNCDAQPQIAQQFGVQALPT 69 (96)
T ss_pred CCCChHHHHHH-HHHHHHHHHhCCc--EEEEEEeccCCHHHHHHcCCCCCCE
Confidence 46799999 88 9999998765553 66778888765444 455666664
No 59
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=20.02 E-value=3.3e+02 Score=19.24 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=19.9
Q ss_pred eEEEEEEecCCcEEEEcceeCCCCCC
Q 045589 102 ALSFKVTTSDGCLFISINVARPNWSF 127 (136)
Q Consensus 102 pls~Rvts~~G~~vv~~~viP~~w~~ 127 (136)
++.+.++|.+|+.+....+-|++|-+
T Consensus 88 ~l~l~L~D~~g~~l~~r~~~P~~yl~ 113 (149)
T PF11906_consen 88 ALELSLLDAQGQPLARRVFTPADYLP 113 (149)
T ss_pred eEEEEEECCCCCEEEEEEEChHHhcc
Confidence 79999999999888766666755544
Done!