Query 045590
Match_columns 261
No_of_seqs 178 out of 346
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 1E-53 2.2E-58 361.4 16.2 132 94-260 1-132 (154)
2 PF12937 F-box-like: F-box-lik 98.8 6.3E-09 1.4E-13 70.6 3.5 45 3-47 1-45 (47)
3 PF00646 F-box: F-box domain; 98.4 5.5E-08 1.2E-12 65.7 0.1 46 1-46 1-46 (48)
4 smart00256 FBOX A Receptor for 98.3 5.2E-07 1.1E-11 58.3 3.5 40 6-45 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 93.7 0.048 1E-06 43.5 2.4 71 2-75 3-73 (109)
6 KOG2997 F-box protein FBX9 [Ge 92.6 0.045 9.7E-07 52.0 0.8 78 3-82 107-194 (366)
7 KOG4408 Putative Mg2+ and Co2+ 87.9 0.15 3.3E-06 48.7 -0.1 52 1-52 6-57 (386)
8 PLN03215 ascorbic acid mannose 87.7 0.43 9.4E-06 46.2 2.9 37 3-39 4-41 (373)
9 KOG0274 Cdc4 and related F-box 86.5 0.4 8.7E-06 48.5 2.0 50 3-52 108-157 (537)
10 KOG2120 SCF ubiquitin ligase, 73.8 2.9 6.3E-05 40.2 2.9 44 3-46 98-141 (419)
11 KOG3926 F-box proteins [Amino 68.1 2.7 5.9E-05 39.4 1.4 76 3-78 202-283 (332)
12 PF13013 F-box-like_2: F-box-l 61.2 7.3 0.00016 31.5 2.5 38 2-39 21-58 (109)
13 PF02018 CBM_4_9: Carbohydrate 49.5 1.1E+02 0.0025 23.2 8.4 28 148-181 57-84 (131)
14 KOG0281 Beta-TrCP (transducin 45.0 14 0.0003 36.2 1.9 44 3-46 75-122 (499)
15 KOG4114 Cytochrome c oxidase a 44.4 13 0.00028 27.9 1.2 17 3-19 38-54 (73)
16 KOG4252 GTP-binding protein [S 28.1 38 0.00083 30.4 1.8 45 46-90 12-56 (246)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=1e-53 Score=361.41 Aligned_cols=132 Identities=50% Similarity=0.936 Sum_probs=119.1
Q ss_pred CceeEEeeccceeeeecCCCCCeEEeecCccccccceEEeeeeEEEEEEEEeccccCCCCceEEEEEEEeccccCCCCcc
Q 045590 94 SKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSL 173 (261)
Q Consensus 94 G~kCymlsAR~L~ItWgd~~~yW~W~~~~~SrF~evAeL~~VcWLeI~G~i~~~~LSp~t~Y~aylv~kl~d~~~G~d~~ 173 (261)
|+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CeEEEEEECCccceeeeeEEeccchhhhhhhhhcccccccchhhhhccccCCCccccceecCCceEEEEeeeEEecCCCc
Q 045590 174 PSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIELGSFYNDGGDG 253 (261)
Q Consensus 174 pv~~~v~~g~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~DGWmEiElGeF~n~~g~d 253 (261)
||+++|++++... ..... ...+|++|+|||||||||||||++++|
T Consensus 81 pv~~~v~~~~~~~-~~~~~----------------------------------~~~~~~~r~dgW~Eie~GeF~~~~~~~ 125 (154)
T PF14299_consen 81 PVEFSVKVPDGEK-YEQER----------------------------------KVCLPKERGDGWMEIELGEFFNEGGDD 125 (154)
T ss_pred CEEEEEEeCCCcc-cccee----------------------------------eEEcCCCCCCCEEEEEcceEEecCCCC
Confidence 9999999944331 11100 122588899999999999999999999
Q ss_pred eeEEEec
Q 045590 254 KEVEIPK 260 (261)
Q Consensus 254 ~EV~~s~ 260 (261)
+||+|++
T Consensus 126 ~ev~f~~ 132 (154)
T PF14299_consen 126 GEVEFSM 132 (154)
T ss_pred cEEEEEE
Confidence 9999986
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.77 E-value=6.3e-09 Score=70.65 Aligned_cols=45 Identities=36% Similarity=0.682 Sum_probs=40.4
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCC
Q 045590 3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFL 47 (261)
Q Consensus 3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fL 47 (261)
|.+||+|.+..|+++++|.|.+++++|||.|+.++.++.+|.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 578999999999999999999999999999999999999998753
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.40 E-value=5.5e-08 Score=65.71 Aligned_cols=46 Identities=41% Similarity=0.675 Sum_probs=39.4
Q ss_pred CCCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccC
Q 045590 1 MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF 46 (261)
Q Consensus 1 ~~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~f 46 (261)
+.+.+||++++..|++++++.|.++++.||+.|+.+.+++..|..+
T Consensus 1 ~~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 1 FPLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CCHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 3467899999999999999999999999999999999999999764
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.33 E-value=5.2e-07 Score=58.32 Aligned_cols=40 Identities=40% Similarity=0.582 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhcc
Q 045590 6 LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEK 45 (261)
Q Consensus 6 LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~ 45 (261)
||++++..|+++++|.|.+++++||+.|+.+.+++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=93.71 E-value=0.048 Score=43.51 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=57.4
Q ss_pred CCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccccccccccCCCCCCCHHHHHHHhc
Q 045590 2 NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLC 75 (261)
Q Consensus 2 ~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~~~~SkKely~~L~ 75 (261)
.++++|-++|.-||...+|....++-.-|+-+. -++|.+|.+|+=.||..-.... .+....|-+++|..+.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~~-~~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKRQ-KPKEPESWRELYEKLK 73 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhcc-cccccchHHHHHHHHH
Confidence 578999999999999999999999999886554 4699999999999997522211 2334468999999986
No 6
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.59 E-value=0.045 Score=52.01 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHhcC-----ChhhhHHhhhccHHHHhhccCchhhccCCCcccccccccccCCC----CCCCHHHHHHH
Q 045590 3 VDLLPEDCFAHILSYT-----SPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPL----VYFSKKELFMR 73 (261)
Q Consensus 3 ~~~LPe~cia~ils~t-----sP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~----~~~SkKely~~ 73 (261)
|..||++.+-.|+... +-++.-++|+||+.|+-+|..|.+|..++=.-|+.-+-...+-. -..|-+++|+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 5689999998888654 45999999999999999999999999999876664332222111 12456666543
Q ss_pred hcCC-ceecC
Q 045590 74 LCSP-VLIDQ 82 (261)
Q Consensus 74 L~~p-~lld~ 82 (261)
+| |.+||
T Consensus 187 --RpRvrFdG 194 (366)
T KOG2997|consen 187 --RPRVRFDG 194 (366)
T ss_pred --Ccceeecc
Confidence 34 55554
No 7
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=87.92 E-value=0.15 Score=48.75 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=47.5
Q ss_pred CCCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccc
Q 045590 1 MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYM 52 (261)
Q Consensus 1 ~~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~ 52 (261)
+++..||.+.+..++++..++++.+.|+||+.....+.-+..|++++-.++.
T Consensus 6 ~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~ 57 (386)
T KOG4408|consen 6 LGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL 57 (386)
T ss_pred cchhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence 4577899999999999999999999999999999999999999999966554
No 8
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=87.72 E-value=0.43 Score=46.24 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHhcC-ChhhhHHhhhccHHHHhhccC
Q 045590 3 VDLLPEDCFAHILSYT-SPRDACRLSLVSSTVRFAADS 39 (261)
Q Consensus 3 ~~~LPe~cia~ils~t-sP~Dacr~a~Vs~~fr~aa~s 39 (261)
-.+||+|.+..|..++ +..|..|+++||+++|+|+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3589999999999987 899999999999999999875
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.49 E-value=0.4 Score=48.47 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=45.3
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccc
Q 045590 3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYM 52 (261)
Q Consensus 3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~ 52 (261)
|..||-+..-.||+++++++.|.+++||+-|+..++.|.+|.+.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 56799999999999999999999999999999999999999977766443
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=73.78 E-value=2.9 Score=40.17 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccC
Q 045590 3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF 46 (261)
Q Consensus 3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~f 46 (261)
.+.||++.+..|+|.+--.|.-++|.|++.|...|....+|.+.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 57899999999999999999999999999999999999999754
No 11
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=68.10 E-value=2.7 Score=39.43 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHHHhcC-ChhhhHHhhhccHHHHhhccCchhhccCCCccccc--ccccccCC-CCCCCHHHHHHHhc--C
Q 045590 3 VDLLPEDCFAHILSYT-SPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYME--ILPRLVLP-LVYFSKKELFMRLC--S 76 (261)
Q Consensus 3 ~~~LPe~cia~ils~t-sP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~--il~~~~~~-~~~~SkKely~~L~--~ 76 (261)
|-|||++|+..||-++ +-+|.--+|.|-.+.....+.+-+|.+.+-=.|.+ |-...... ..-.--|++|++|- .
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L~r~y 281 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQLRRTY 281 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHHHHhc
Confidence 6799999999999875 58999999999999999999999999877654432 22111100 00123578999885 4
Q ss_pred Cc
Q 045590 77 PV 78 (261)
Q Consensus 77 p~ 78 (261)
|+
T Consensus 282 g~ 283 (332)
T KOG3926|consen 282 GV 283 (332)
T ss_pred Ch
Confidence 54
No 12
>PF13013 F-box-like_2: F-box-like domain
Probab=61.22 E-value=7.3 Score=31.49 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccC
Q 045590 2 NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADS 39 (261)
Q Consensus 2 ~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~s 39 (261)
.+.|||++.+..|+.+-.+.+...+...++++|.+.+.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999987444
No 13
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=49.54 E-value=1.1e+02 Score=23.15 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=20.0
Q ss_pred ccCCCCceEEEEEEEeccccCCCCccCeEEEEEE
Q 045590 148 TISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEV 181 (261)
Q Consensus 148 ~LSp~t~Y~aylv~kl~d~~~G~d~~pv~~~v~~ 181 (261)
.|.||.+|.+.+-+|.... .++.+.+..
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~ 84 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRD 84 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEE
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEE
Confidence 3569999999999999874 445555554
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=45.00 E-value=14 Score=36.15 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=37.5
Q ss_pred CCCCc----HHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccC
Q 045590 3 VDLLP----EDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF 46 (261)
Q Consensus 3 ~~~LP----e~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~f 46 (261)
+..|| +.....|||+++..+.|.+-.||+.++.+-....+|.+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 34689 899999999999999999999999999887776666543
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=44.42 E-value=13 Score=27.93 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHhcCC
Q 045590 3 VDLLPEDCFAHILSYTS 19 (261)
Q Consensus 3 ~~~LPe~cia~ils~ts 19 (261)
+.+|||+|++.+=.|+.
T Consensus 38 ~~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 38 LKDVPEECIALMKAFLD 54 (73)
T ss_pred cccCcHHHHHHHHHHHH
Confidence 46799999999998875
No 16
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=28.07 E-value=38 Score=30.38 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCCcccccccccccCCCCCCCHHHHHHHhcCCceecCCceeEEEc
Q 045590 46 FLPVDYMEILPRLVLPLVYFSKKELFMRLCSPVLIDQGKKTFSLE 90 (261)
Q Consensus 46 fLP~dy~~il~~~~~~~~~~SkKely~~L~~p~lld~g~ks~wld 90 (261)
.+|.||+..+.-.--+...-.|+.+.++.|.+|+-.|-+|..|+|
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvd 56 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVD 56 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchh
Confidence 567788755443222334457999999999999999999999988
Done!