Query 045590
Match_columns 261
No_of_seqs 178 out of 346
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2.8E-09 9.5E-14 72.9 4.6 45 2-46 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.5 2.5E-08 8.5E-13 92.0 2.7 73 3-75 5-93 (312)
3 2e31_A FBS1, F-box only protei 98.2 9.9E-07 3.4E-11 81.0 4.3 79 2-82 50-130 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.9 4.7E-06 1.6E-10 76.1 3.0 46 3-48 19-64 (445)
5 3v7d_B Cell division control p 97.6 1.1E-05 3.8E-10 73.5 1.0 45 3-47 15-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.5 1E-05 3.5E-10 73.9 -0.4 48 3-50 11-62 (435)
7 2ast_B S-phase kinase-associat 97.0 0.00052 1.8E-08 60.6 4.1 44 2-45 8-51 (336)
8 2p1m_B Transport inhibitor res 95.1 0.012 4.1E-07 55.6 3.6 34 3-36 6-40 (594)
9 3ogk_B Coronatine-insensitive 93.4 0.047 1.6E-06 51.6 3.6 33 4-36 14-47 (592)
10 4hfx_A Transcription elongatio 84.8 0.46 1.6E-05 36.6 2.3 64 5-75 12-75 (97)
11 1dyo_A Endo-1,4-beta-xylanase 67.0 47 0.0016 26.5 10.1 20 147-166 63-82 (160)
12 3tes_A Tencon; fibronectin typ 43.1 45 0.0015 23.7 5.3 38 144-185 57-94 (98)
13 3hsh_A Endostatin, collagen al 27.6 30 0.001 23.8 1.9 19 229-248 35-53 (56)
14 3qht_C Monobody YSMB-1; fibron 25.7 59 0.002 22.8 3.4 34 144-178 60-94 (97)
15 2w5f_A Endo-1,4-beta-xylanase 25.5 2.9E+02 0.01 26.3 9.2 18 146-163 77-94 (540)
16 3n3f_A Collagen alpha-1(XV) ch 23.3 18 0.00061 24.7 0.1 18 230-248 34-51 (54)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.84 E-value=2.8e-09 Score=72.93 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=40.3
Q ss_pred CCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccC
Q 045590 2 NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF 46 (261)
Q Consensus 2 ~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~f 46 (261)
.+.+||++++..|+++++|.|.+++++|||.|+.++.++.+|.++
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 478999999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.53 E-value=2.5e-08 Score=91.99 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=60.1
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCccc---ccccccccCCC-------------CCCC
Q 045590 3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDY---MEILPRLVLPL-------------VYFS 66 (261)
Q Consensus 3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy---~~il~~~~~~~-------------~~~S 66 (261)
|++||.+++.+|+||++|.|+||+|+||+.+|.+|+.+.+|..||-.|+ .+|-..+.+.. .+..
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~ 84 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD 84 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence 6789999999999999999999999999999999999999999998764 44444333211 1456
Q ss_pred HHHHHHHhc
Q 045590 67 KKELFMRLC 75 (261)
Q Consensus 67 kKely~~L~ 75 (261)
++.+|.+=|
T Consensus 85 ~~~~y~~~~ 93 (312)
T 3l2o_B 85 YMAVYRMCC 93 (312)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 789999887
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.17 E-value=9.9e-07 Score=81.02 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCCCCcHHHHHHHHhcCChhhhH-HhhhccHHHHhhccCchhhccCCCcccccccccccCCCCCCCHHHHHHHhc-CCce
Q 045590 2 NVDLLPEDCFAHILSYTSPRDAC-RLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLC-SPVL 79 (261)
Q Consensus 2 ~~~~LPe~cia~ils~tsP~Dac-r~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~~~~SkKely~~L~-~p~l 79 (261)
.+..||++.+..||+++.|++.+ |+++|||.||.+++++.+|.++|... .+......+.+..+-|.+|+.-- .-+|
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~~~~~~Wk~~y~~~~~gRNL 127 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSADEERDHWQQFYFLSKRRRNL 127 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-----CCSCHHHHHHHHHHCCCC
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccCCCCCChhhhheheecccce
Confidence 57899999999999999999999 99999999999999999999998765 22221111123456899998754 3456
Q ss_pred ecC
Q 045590 80 IDQ 82 (261)
Q Consensus 80 ld~ 82 (261)
|.+
T Consensus 128 L~N 130 (297)
T 2e31_A 128 LRN 130 (297)
T ss_dssp SSC
T ss_pred eec
Confidence 654
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.89 E-value=4.7e-06 Score=76.08 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=43.6
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCC
Q 045590 3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLP 48 (261)
Q Consensus 3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP 48 (261)
|..||++++..|+++++|.|.|++++||+.|+.+++++.+|.+++-
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 6789999999999999999999999999999999999999998763
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.62 E-value=1.1e-05 Score=73.48 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccC-chhhccCC
Q 045590 3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADS-DNVWEKFL 47 (261)
Q Consensus 3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~s-D~vW~~fL 47 (261)
|..||++++..|+++++|.|.|++++||+.|+.++++ +.+|.+++
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4569999999999999999999999999999999987 89999887
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.54 E-value=1e-05 Score=73.89 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=44.1
Q ss_pred CCCCcHH----HHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcc
Q 045590 3 VDLLPED----CFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVD 50 (261)
Q Consensus 3 ~~~LPe~----cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~d 50 (261)
|..||++ ++..|+++++|.|.|++++||+.|+.+++++.+|.+++-..
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 3569999 99999999999999999999999999999999999887654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.95 E-value=0.00052 Score=60.55 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=40.4
Q ss_pred CCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhcc
Q 045590 2 NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEK 45 (261)
Q Consensus 2 ~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~ 45 (261)
.+++||++++..|+++++++|.++++.||+.|+.++.+...|.+
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~ 51 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence 47899999999999999999999999999999999877777765
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.11 E-value=0.012 Score=55.62 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=29.4
Q ss_pred CCCCcHHHHHHHHhcCC-hhhhHHhhhccHHHHhh
Q 045590 3 VDLLPEDCFAHILSYTS-PRDACRLSLVSSTVRFA 36 (261)
Q Consensus 3 ~~~LPe~cia~ils~ts-P~Dacr~a~Vs~~fr~a 36 (261)
+++||++++..|+++++ ++|++++|.||+.|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 67899999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.39 E-value=0.047 Score=51.63 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHhcC-ChhhhHHhhhccHHHHhh
Q 045590 4 DLLPEDCFAHILSYT-SPRDACRLSLVSSTVRFA 36 (261)
Q Consensus 4 ~~LPe~cia~ils~t-sP~Dacr~a~Vs~~fr~a 36 (261)
.+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 379999999999999 899999999999999987
No 10
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=84.77 E-value=0.46 Score=36.61 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccccccccccCCCCCCCHHHHHHHhc
Q 045590 5 LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLC 75 (261)
Q Consensus 5 ~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~~~~SkKely~~L~ 75 (261)
..|-+.+.-||-..||....++-.-|+.+ +-++|-+|.+|+=.||..-- +....|-+++|.+|.
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PEEYESWREMYLRLQ 75 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CCSSSCHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CCCCCCHHHHHHHHH
Confidence 35888899999999999999999999965 56899999999999998432 344579999999996
No 11
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=67.01 E-value=47 Score=26.51 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.5
Q ss_pred cccCCCCceEEEEEEEeccc
Q 045590 147 KTISPKTQYAAYLIVKFAER 166 (261)
Q Consensus 147 ~~LSp~t~Y~aylv~kl~d~ 166 (261)
..|.||++|.+..-+|+.+.
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g 82 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEG 82 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSS
T ss_pred hhccCCCEEEEEEEEEECCC
Confidence 46889999999999998764
No 12
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=43.12 E-value=45 Score=23.74 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=26.4
Q ss_pred EeccccCCCCceEEEEEEEeccccCCCCccCeEEEEEECCcc
Q 045590 144 INTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGS 185 (261)
Q Consensus 144 i~~~~LSp~t~Y~aylv~kl~d~~~G~d~~pv~~~v~~g~~~ 185 (261)
+...-|.|+|.|.+.+.-.-.. |- ..|+...+..||+.
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~~---g~-S~p~~~~~~~~~~~ 94 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKGG---HR-SNPLSAEFTTGGHH 94 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---EE-BCCEEEEEECSSCC
T ss_pred EEECCCCCCCEEEEEEEEEeCC---cc-cCCEEEEEEcCccc
Confidence 3345699999999876554432 43 48998888887754
No 13
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=27.59 E-value=30 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=15.5
Q ss_pred ccceecCCceEEEEeeeEEe
Q 045590 229 RFAREREDGWIEIELGSFYN 248 (261)
Q Consensus 229 ~~P~~R~DGWmEiElGeF~n 248 (261)
.|-++| +||=+|-||++-.
T Consensus 35 LyiRVr-~Gwr~v~Lg~~ip 53 (56)
T 3hsh_A 35 LYVRVQ-NGFRKVQLEARTP 53 (56)
T ss_dssp EEEEET-TEEEEECEEEEEE
T ss_pred EEEEEc-Cceeeeeeccccc
Confidence 367777 7999999999854
No 14
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=25.71 E-value=59 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=20.3
Q ss_pred EeccccCCCCceEEEEEEEeccccCC-CCccCeEEE
Q 045590 144 INTKTISPKTQYAAYLIVKFAERAFG-LDSLPSEVS 178 (261)
Q Consensus 144 i~~~~LSp~t~Y~aylv~kl~d~~~G-~d~~pv~~~ 178 (261)
+.-..|.|+|.|.+.+.-.-..+ .| ....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G-~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYY-DLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEET-TEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCc-cCCCCCCCEEEe
Confidence 33457999999988766544432 23 233565544
No 15
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=25.53 E-value=2.9e+02 Score=26.34 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.4
Q ss_pred ccccCCCCceEEEEEEEe
Q 045590 146 TKTISPKTQYAAYLIVKF 163 (261)
Q Consensus 146 ~~~LSp~t~Y~aylv~kl 163 (261)
+..|.||++|....-+|.
T Consensus 77 ~~~l~~G~~Y~fSawVk~ 94 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH 94 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC
T ss_pred cceecCCCEEEEEEEEEe
Confidence 457899999999988885
No 16
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=23.29 E-value=18 Score=24.73 Aligned_cols=18 Identities=44% Similarity=0.999 Sum_probs=15.1
Q ss_pred cceecCCceEEEEeeeEEe
Q 045590 230 FAREREDGWIEIELGSFYN 248 (261)
Q Consensus 230 ~P~~R~DGWmEiElGeF~n 248 (261)
|-|+| +||=+|-||+|..
T Consensus 34 yiRVr-~Gwr~v~Lg~~ip 51 (54)
T 3n3f_A 34 FIRVR-DGWKKLQLGELIP 51 (54)
T ss_dssp EEEET-TEEEECCCCCCCC
T ss_pred EEEEc-Cceeeeecccccc
Confidence 67777 7999999999864
Done!