BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045591
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
           Chrysosporium (Lam55a)
 pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
           Chrysosporium (Lam55a)
 pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
           Chrysosporium (Lam55a) Gluconolactone Complex
 pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
           Chrysosporium (Lam55a) Gluconolactone Complex
          Length = 758

 Score = 33.5 bits (75), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 28  SVISLGTKSDGQTDTTKAFLAAWAKA--CGSTADST------IYVPPGRY 69
           +V + G K DG TD T A  AA      CG   DST      +Y PPG Y
Sbjct: 51  NVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTY 100



 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 28  SVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVV 75
           SV S G K DG TD T+A    +AK  G      I+   G Y++ + +
Sbjct: 402 SVRSQGAKGDGHTDDTQAIKNVFAKYAGC---KIIFFDAGTYIVTDTI 446


>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
          Length = 422

 Score = 32.7 bits (73), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHN-VVFQGQSRNND 84
          T +++S G  +D  TD   A  +AWA AC S     +Y+P G Y L+  V   G S    
Sbjct: 20 TCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTWVTLTGGSAT-- 74

Query: 85 ITIRFDGTL 93
            I+ DG +
Sbjct: 75 -AIQLDGII 82


>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
          Gene Product 12
          Length = 772

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 28 SVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL-------HNVVFQGQS 80
          SV + G K DG TD  +AF  A        +   +YVP G +++        N V  G  
Sbjct: 24 SVKTYGAKGDGVTDDIRAFEKA------IESGFPVYVPYGTFMVSRGIKLPSNTVLTGAG 77

Query: 81 RNNDITIRFDGTLG 94
          + N + IRF  ++G
Sbjct: 78 KRNAV-IRFMDSVG 90


>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
          Product 12 N- Terminal Fragment
 pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
          Product 12 N- Terminal Fragment In Complex With
          2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
 pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
          Product 12 N- Terminal Fragment In An Apo Form
 pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
          Product 12 N- Terminal Fragment In Complex With Cobalt
          Ions
          Length = 609

 Score = 29.3 bits (64), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 28 SVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL-------HNVVFQGQS 80
          SV + G K DG TD  +AF  A        +   +YVP G +++        N V  G  
Sbjct: 24 SVKTYGAKGDGVTDDIRAFEKA------IESGFPVYVPYGTFMVSRGIKLPSNTVLTGAG 77

Query: 81 RNNDITIRFDGTLG 94
          + N + IRF  ++G
Sbjct: 78 KRNAV-IRFMDSVG 90


>pdb|3LA1|A Chain A, High Resolution Crystal Structure Of Cypet Mutant A167i
          Length = 237

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 69  YLLHNVVFQGQSRNNDIT----IRFDGTLGSIRLSDHWR 103
           Y+ HNV      + N I     IR + T GS++L+DH++
Sbjct: 144 YISHNVYITADKQKNGIKANFKIRHNITDGSVQLADHYQ 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,656,496
Number of Sequences: 62578
Number of extensions: 92100
Number of successful extensions: 180
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 10
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)