BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045591
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1
Length = 393
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 7 LVLIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPP 66
L LIF + ++S+ A P+ TY+V SLG K+DG+TD+TKAFL+AWAKAC S IYVP
Sbjct: 10 LSLIF-VFMINSAIASPL-TYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPA 67
Query: 67 GRYLLHNVVFQGQSRNNDITIRFDGTL 93
G + L +VVF G +NN IT R GTL
Sbjct: 68 GTFFLRDVVFSGPCKNNAITFRIAGTL 94
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana
GN=At2g43860 PE=2 SV=1
Length = 405
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 18 SSSAIPM-VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVF 76
SS A P+ T +V+S G K DG D+TKAFLAAW AC S +TI VP GR+L+ N+VF
Sbjct: 23 SSLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVF 82
Query: 77 QG-QSRNNDITIRFDGTLGS------IRLSDHW 102
G + + I+IR G++ + I S HW
Sbjct: 83 HGNECKQAPISIRIAGSIVAPEDFRIIASSKHW 115
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1
Length = 407
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 1 MSLHILLV---LIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGST 57
M+ H+ +V + L+LF+S+S P V G K+DG+TD +K FL AW +AC S
Sbjct: 1 MAPHLNIVPSMFVLLLLFISASKVQPDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASV 60
Query: 58 ADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
ST+ +P G YLL V +G + I I GT+
Sbjct: 61 TPSTVVIPKGTYLLSKVNLEGPCK-APIEINVQGTI 95
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1
Length = 407
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 1 MSLHILLV---LIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGST 57
M+ H+ +V + L+LF+S+S V G K+DG+TD +K FL AW +AC S
Sbjct: 1 MAPHLNIVPSMFVLLLLFISASKVQSDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASV 60
Query: 58 ADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
ST+ +P G YLL V +G + I I GT+
Sbjct: 61 TPSTVVIPKGTYLLSKVNLEGPCK-APIEINVQGTI 95
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1
Length = 410
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 16 VSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVV 75
+ + ++ P ++ + LG +G+TD+TKA AWA ACG T TI +P G +L+ +
Sbjct: 30 IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLN 89
Query: 76 FQGQSRNNDITIRFDGTL 93
F G + D+TI+ DG L
Sbjct: 90 FTGPCK-GDVTIQVDGNL 106
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1
Length = 410
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 16 VSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVV 75
+ + ++ P ++ + LG +G+TD+TKA AWA ACG T TI +P G +L+ +
Sbjct: 30 IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLN 89
Query: 76 FQGQSRNNDITIRFDGTL 93
F G + D+TI+ DG L
Sbjct: 90 FTGPCK-GDVTIQVDGNL 106
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1
Length = 410
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 23 PMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRN 82
P ++ + LG +G+TD+TKA AWA ACG T TI +P G +L+ + F G +
Sbjct: 37 PGGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCK- 95
Query: 83 NDITIRFDGTL 93
D+TI+ +G L
Sbjct: 96 GDVTIQVNGNL 106
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1
Length = 431
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/101 (39%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 12 LILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YL 70
L L S + + T SV + G K DG+TD T+AF AW KAC + +T VP G+ YL
Sbjct: 53 LSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKTYL 112
Query: 71 LHNVVFQGQS---RNNDITIRFDGTL-GSIRLSD-----HW 102
L + F+G RN I GTL S + SD HW
Sbjct: 113 LKSTRFRGPCKSLRNFQIL----GTLSASTKRSDYKDKNHW 149
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2
Length = 433
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHN 73
FV +S P T SV G K DG+TD T+AF+ AW KAC S + VP G YLL +
Sbjct: 57 FVRASLRTP-TTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKS 115
Query: 74 VVFQGQSRNNDITIRFDGTL-GSIRLSDH 101
+ G N+ +T++ GTL S + SD+
Sbjct: 116 IQLTGPC-NSILTVQIFGTLSASQKRSDY 143
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3
PE=2 SV=1
Length = 422
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 16 VSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVV 75
++++S P V Y + G DG T+T KAFL W + C S +T+ VP G +L V+
Sbjct: 42 LAANSGNPTV-YDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVI 100
Query: 76 FQGQSRNNDITIRFDGTL 93
F G ++ +T+ GT+
Sbjct: 101 FAGPCKSK-VTVNVIGTI 117
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 9 LIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG- 67
L FL +F SS++ V G DG TD ++AFL AW C T D VP G
Sbjct: 12 LFFLQIFTSSNA------LDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGM 65
Query: 68 RYLLHNVVFQGQSRNNDITIRFDGTL 93
++L + FQG ++ + ++ G L
Sbjct: 66 TFMLQPLKFQGSCKSTPVFVQMLGKL 91
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
Length = 467
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDI 85
T +V G K DG+ DT KAF AW AC ST+ + + VP YL+ + F G ++ +
Sbjct: 89 TVNVDDFGAKGDGRDDT-KAFEKAWKAACSSTSSAVLLVPKKNYLVRPISFSGPCKSG-L 146
Query: 86 TIRFDGTL 93
T++ GT+
Sbjct: 147 TMQIYGTI 154
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1
Length = 457
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 28 SVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHNVVFQGQSRNNDIT 86
+V+S G K DG+T AF AW +AC S VP + YLL + F G R++ I+
Sbjct: 77 NVLSFGAKGDGKTYDNIAFEQAWNEACSSRTPVQFVVPKNKNYLLKQITFSGPCRSS-IS 135
Query: 87 IRFDGTL-GSIRLSDH 101
++ G+L S ++SD+
Sbjct: 136 VKIFGSLEASSKISDY 151
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1
Length = 460
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 18 SSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQ 77
++S+ P T SV G K +G D T+AF+ AW AC S+ + VP YL+ + F
Sbjct: 90 ATSSAPAKTISVDDFGAKGNG-ADDTQAFVKAWKAACSSSGAMVLVVPQKNYLVRPIEFS 148
Query: 78 GQSRNNDITIRFDGTLGS------IRLSDHW 102
G + + +T++ GT+ + + DHW
Sbjct: 149 GPCK-SQLTLQIYGTIEASEDRSIYKDIDHW 178
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2
PE=1 SV=1
Length = 377
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 16 VSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVV 75
V SS ++ ++V G K G D ++A + AW AC S ST+ +P G Y + V
Sbjct: 3 VQSSGSV----FNVNDYGAKGAG--DISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVA 56
Query: 76 FQGQSRNNDITIRFDGTL 93
QG + + I + DG +
Sbjct: 57 MQGPCKGSKIGFQIDGVV 74
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1
Length = 396
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 3 LHILLVLIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTI 62
+H LVL+FL F S + + + + G S+ D ++A L A+ +AC ST+ STI
Sbjct: 7 VHFALVLLFLAHFGESQTGV----FDITKYGANSNA--DISEALLNAFKEACQSTSPSTI 60
Query: 63 YVPPGRYLLHNVVFQGQSRN 82
+P G + ++ V +G ++
Sbjct: 61 VIPKGTFTMNQVKLEGPCKS 80
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 16 VSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHNV 74
V P SV G + DG TD TKAF AW AC S S + VP + YLL +
Sbjct: 74 VGGPETSPDTDISVDDFGARGDG-TDDTKAFEKAWKDACSSG--SVLIVPENKNYLLKQI 130
Query: 75 VFQGQSRNNDITIRFDGTLGSIRLSDHW 102
F G + +D+ ++ GT+ + W
Sbjct: 131 TFSGPCK-SDLRVKIRGTIEASSDQSDW 157
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2
Length = 439
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHNVVFQGQSRNND 84
+++V + G K++G D+ KAF+ AW AC ST I P R Y+L V F G +++
Sbjct: 70 SFNVNTFGAKANGNDDS-KAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSGPCKSSL 128
Query: 85 ITIRFDGTL 93
I + G +
Sbjct: 129 IIFKIYGRI 137
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1
Length = 421
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 2 SLHILLVLIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADST 61
S I++ +F+ F ++ S + + G K + +D +A +AW +AC ST +
Sbjct: 4 STAIIVSFLFIADFCAAQSGV----LDISKFGGKPN--SDIGQALTSAWNEACASTTAAK 57
Query: 62 IYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
I +P G Y L+ + +G + I ++ DGT+
Sbjct: 58 IVIPAGTYQLNGIELKGPCK-APIELQVDGTI 88
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 27 YSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG-RYLLHNVVFQGQSRNNDI 85
++V G DG+ D+T+AF W AC A + + VP ++ ++N+VF+G + + +
Sbjct: 59 FNVEQYGAVGDGKHDSTEAFATTWNAAC-KKASAVLLVPANKKFFVNNLVFRGPCQPH-L 116
Query: 86 TIRFDGTL 93
+ + DGT+
Sbjct: 117 SFKVDGTI 124
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1
Length = 362
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 41 DTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
D+T+A AW +AC S + STI VP G + + + +G +++ I ++ GTL
Sbjct: 1 DSTQALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSS-IGLQLQGTL 52
>sp|A2QLQ5|RHGC_ASPNC Probable rhamnogalacturonase C OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rhgC PE=3 SV=1
Length = 459
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 1 MSLHILLVLIFLILFVS---SSSAIPMVTYS---------VISLGTKSDGQTDTTKAFLA 48
M IL + +FL S P+V YS +I G +DG+TD ++A L
Sbjct: 1 MRASILPLTLFLATLAGAQLSGPVGPLVDYSTKARNQTCNIIDYGAVADGKTDISQALLD 60
Query: 49 AWAKACGSTADSTIYVPPGRYLLHNVVF--QGQSRNNDITIRFDGTL 93
AW + +Y+PPG Y L + GQS I+ DG +
Sbjct: 61 AWGNC---SVGGLVYIPPGNYSLAEDIELKHGQSS----AIQLDGVV 100
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG--RYLLHNVVFQGQSRN 82
+ ++V G DG+ D+T AF W AC S +++ P +++++N+VF G +
Sbjct: 58 IVFNVEHYGAVGDGKHDSTDAFEKTWNAACNKL--SAVFLVPANKKFVVNNLVFYGPCQP 115
Query: 83 NDITIRFDGTLGSIRLSDHWRCWKL 107
+ + + DGT+ + W+ K+
Sbjct: 116 H-FSFKVDGTIAAYPDPAKWKNSKI 139
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 27 YSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG--RYLLHNVVFQGQSRNND 84
++V G DG+ D T+AF AW AC S + + PG +++++N+ F G + +
Sbjct: 59 FNVEKYGAVGDGKHDCTEAFSTAWQAACKKP--SAMLLVPGNKKFVVNNLFFNGPCQPH- 115
Query: 85 ITIRFDGTLGSIRLSDHWR 103
T + DG + + + W+
Sbjct: 116 FTFKVDGIIAAYQNPASWK 134
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana
GN=At1g80170 PE=1 SV=1
Length = 444
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 29 VISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG-RYLLHNVVFQGQSRNNDITI 87
V + G K +G TD TKAF AW AC S + I VP LL + G + +T+
Sbjct: 55 VGNFGAKGNGVTDDTKAFADAWKTACSSKVKTRILVPENYTCLLRPIDLSGPCKAR-LTL 113
Query: 88 RFDGTLGSIRLSDHWR 103
+ GT+ + D W
Sbjct: 114 QISGTIIAPNDPDVWE 129
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100
PE=2 SV=1
Length = 475
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 27 YSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDIT 86
+ V S G DG D T AF AW AC + + G + + + +F G + +
Sbjct: 80 FDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFSGPCKPG-LV 138
Query: 87 IRFDGTL 93
+ DG L
Sbjct: 139 FQLDGVL 145
>sp|Q1ZZM3|RHGE_ASPNG Probable rhamnogalacturonase E OS=Aspergillus niger GN=rhgE PE=3
SV=1
Length = 450
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 16 VSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHN 73
VS +A+ T +V+ G +SD TD + + A+A CGS IY+P G YLL N
Sbjct: 34 VSDKAAVK--TCNVLDYGARSDNTTDVGQPIIDAFAD-CGSGG--LIYIPEGDYLLKN 86
>sp|Q2UFD2|RHGC_ASPOR Probable rhamnogalacturonase C OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rhgC PE=3 SV=1
Length = 447
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71
T + G +DG+TD A L AW + IYVPPG Y L
Sbjct: 39 TCDITDYGAVADGKTDVGPAILDAWGNC---STGGLIYVPPGTYSL 81
>sp|B8NGP8|RHGC_ASPFN Probable rhamnogalacturonase C OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=rhgC PE=3 SV=2
Length = 447
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71
T + G +DG+TD A L AW + IYVPPG Y L
Sbjct: 39 TCDITDYGAVADGKTDVGPAILDAWGNC---STGGLIYVPPGTYSL 81
>sp|A3N3A1|SYGB_ACTP2 Glycine--tRNA ligase beta subunit OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=glyS PE=3
SV=1
Length = 689
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 30 ISLGTKSDGQTDTTKAFLAAWAKACGSTADST--IYVPPGRYLLHNVVFQGQSRNN 83
+S +DG+ TKA WA+ CG T D I G +L+H V +GQ N
Sbjct: 77 VSAAFDADGKP--TKA-AEGWARGCGITVDQADRIATDKGEWLVHRAVIEGQPTKN 129
>sp|Q00001|RHGA_ASPAC Rhamnogalacturonase A OS=Aspergillus aculeatus GN=rhgA PE=1 SV=1
Length = 440
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHN- 73
S+S+ T +++S G +D TD A +AWA AC S +Y+P G Y L+
Sbjct: 27 LTSASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTW 83
Query: 74 VVFQGQSRNNDITIRFDGTL 93
V G S I+ DG +
Sbjct: 84 VTLTGGSA---TAIQLDGII 100
>sp|B8F711|SYGB_HAEPS Glycine--tRNA ligase beta subunit OS=Haemophilus parasuis serovar 5
(strain SH0165) GN=glyS PE=3 SV=1
Length = 689
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 37 DGQTDTTKAFLAAWAKACGSTADST--IYVPPGRYLLHNVVFQGQSRNN 83
D + TKA WAK CG T + I G +L+H V +GQ N
Sbjct: 82 DAEGKPTKA-AEGWAKGCGITVEQAERIATDKGEWLVHRAVIEGQPTKN 129
>sp|A6VLE1|SYGB_ACTSZ Glycine--tRNA ligase beta subunit OS=Actinobacillus succinogenes
(strain ATCC 55618 / 130Z) GN=glyS PE=3 SV=1
Length = 689
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 37 DGQTDTTKAFLAAWAKACGSTADST--IYVPPGRYLLHNVVFQGQSRNN 83
D + TKA WA+ CG T D + G +L+H V +GQ N
Sbjct: 82 DAEGKPTKA-AEGWARGCGITVDQAERLVTDKGEWLVHRAVIEGQPTKN 129
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1
Length = 397
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 40 TDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL----GS 95
+D T A L A+ AC + A S + +P G + L V G + + I G + GS
Sbjct: 33 SDITAAVLKAFTSACQAPAPSQVLIPKGDFKLGETVMTGPCK-SPIEFTLQGNVKTDGGS 91
Query: 96 IRLSDHW 102
+ D W
Sbjct: 92 TQGKDRW 98
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 28 SVISLGTKSDGQTDTTKAFLAAWAK--ACGSTADSTIYVPPGRYL 70
S++ G DGQT TKAF A ++ GS + +YVP G++L
Sbjct: 64 SLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWL 108
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana
GN=At3g07850 PE=1 SV=2
Length = 444
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 19 SSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQG 78
S A P V + G K D +TD + A A A A STI VP G Y++ ++ F+G
Sbjct: 62 SGAKPGAAVDVKASGAKGDSKTDDSAA--FAAAWKEACAAGSTITVPKGEYMVESLEFKG 119
Query: 79 QSRNNDITIRFDGTL 93
+ +T+ +G
Sbjct: 120 PCK-GPVTLELNGNF 133
>sp|B0UWA9|SYGB_HAES2 Glycine--tRNA ligase beta subunit OS=Haemophilus somnus (strain
2336) GN=glyS PE=3 SV=1
Length = 688
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 37 DGQTDTTKAFLAAWAKACGSTADST--IYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLG 94
D + TKA WA+ CG T + + G +L+H V +GQ N + D L
Sbjct: 82 DAEGKPTKA-AEGWARGCGITVEQAERLATDKGEWLVHRAVIEGQPTKNLLVGIIDKALA 140
Query: 95 SIRLSDHWR 103
+ + R
Sbjct: 141 GLPIPKTMR 149
>sp|P49426|EXG1_COCCA Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum GN=EXG1 PE=1
SV=1
Length = 788
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 28 SVISLGTKSDGQTDTTKAFLAAWAKA-------CGSTADS--TIYVPPGRYLLHNVV 75
+V G K DG TD + AF A + C S+ DS +YVP G YL++ +
Sbjct: 72 NVKDYGAKGDGVTDDSDAFNRAISDGSRCGPWVCDSSTDSPAVVYVPSGTYLINKPI 128
>sp|Q8WZW7|RPC3_NEUCR DNA-directed RNA polymerase III subunit rpc-3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpc-82 PE=3 SV=1
Length = 624
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 63 YVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHW 102
Y P GR ++ N++ GQ+R +D+ + + + D W
Sbjct: 102 YGPAGRDVMQNLLLLGQTRISDLVAAYQAKINEVNNDDAW 141
>sp|A2QYE5|RHGA_ASPNC Probable rhamnogalacturonase A OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rhgA PE=3 SV=1
Length = 446
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71
S+ S T +V+ G +D TD A AW AC + IY+PPG Y +
Sbjct: 27 LTSAHSKAATKTCNVLDYGAVADNSTDIGSALSEAW-DAC--SDGGLIYIPPGDYAM 80
>sp|P87160|RHGA_ASPNG Rhamnogalacturonase A OS=Aspergillus niger GN=rhgA PE=1 SV=1
Length = 446
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71
S+ S T +V+ G +D TD A AW AC + IY+PPG Y +
Sbjct: 27 LTSAHSKAATKTCNVLDYGAVADNSTDIGSALSEAW-DAC--SDGGLIYIPPGDYAM 80
>sp|Q0I273|SYGB_HAES1 Glycine--tRNA ligase beta subunit OS=Haemophilus somnus (strain
129Pt) GN=glyS PE=3 SV=1
Length = 688
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 37 DGQTDTTKAFLAAWAKACGSTADST--IYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLG 94
D + TKA WA+ CG T + + G +L+H V +GQ N + D L
Sbjct: 82 DAEGKPTKA-AEGWARGCGITVEQAERLSTDKGEWLVHRAVIEGQLTKNLLVGIIDKALA 140
Query: 95 SIRLSDHWR 103
+ + R
Sbjct: 141 GLPIPKTMR 149
>sp|P07537|VG12_BPPZA Pre-neck appendage protein OS=Bacillus phage PZA GN=12 PE=4 SV=1
Length = 854
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 28 SVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL-------HNVVFQGQS 80
SV + G K DG TD KAF A + +YVP G +++ N V G
Sbjct: 106 SVKTYGAKGDGVTDDIKAFEKA------IESGFPVYVPYGTFMVSRGIKLPSNTVLTGAG 159
Query: 81 RNNDITIRFDGTLG 94
+ N + I+F ++G
Sbjct: 160 KRNAV-IKFMDSVG 172
>sp|P10478|XYNZ_CLOTH Endo-1,4-beta-xylanase Z OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=xynZ PE=1 SV=3
Length = 837
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 6 LLVLIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVP 65
L+++ L++ +SS+SA + T +G ++ ++ A ST + +Y+P
Sbjct: 13 LMLMTSLLVTISSTSAASLPTMPPSGYDQVRNGVPRGQVVNISYFSTATNSTRPARVYLP 72
Query: 66 PGR---------YLLH------NVVFQGQSRNNDI 85
PG YLLH N F+G R N I
Sbjct: 73 PGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVI 107
>sp|A1DED1|RHGB_NEOFI Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rhgB
PE=3 SV=1
Length = 516
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71
S+S+ T +V+ G K+D +TD AA+A AC S +Y+P G Y +
Sbjct: 30 LTSASAKAAKKTCNVLDYGAKADKKTDLGPPLAAAFA-ACKSGG--LVYIPAGNYAM 83
>sp|B0Y0Q3|RHGB_ASPFC Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=rhgB PE=3 SV=1
Length = 521
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71
S+S+ T +V+ G K+D +TD AA+A AC S +Y+P G Y +
Sbjct: 30 LTSASAKAAKKTCNVLDYGAKADKKTDLGPPLAAAFA-ACKSGG--LVYIPAGDYAM 83
>sp|Q4WV23|RHGB_ASPFU Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rhgB PE=3 SV=1
Length = 521
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71
S+S+ T +V+ G K+D +TD AA+A AC S +Y+P G Y +
Sbjct: 30 LTSASAKAAKKTCNVLDYGAKADKKTDLGPPLAAAFA-ACKSGG--LVYIPAGDYAM 83
>sp|B0BSX5|SYGB_ACTPJ Glycine--tRNA ligase beta subunit OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=glyS PE=3
SV=1
Length = 689
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 30 ISLGTKSDGQTDTTKAFLAAWAKACGSTADST--IYVPPGRYLLHNVVFQGQSRNN 83
+S +DG+ TKA WA+ CG + + + G +L+H V +GQ N
Sbjct: 77 VSAAFDADGKP--TKA-AEGWARGCGISVEQAERLATDKGEWLVHRAVIEGQPTKN 129
>sp|B3GZ55|SYGB_ACTP7 Glycine--tRNA ligase beta subunit OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=glyS PE=3
SV=1
Length = 688
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 30 ISLGTKSDGQTDTTKAFLAAWAKACGSTADST--IYVPPGRYLLHNVVFQGQSRNN 83
+S +DG+ TKA WA+ CG + + + G +L+H V +GQ N
Sbjct: 77 VSAAFDADGKP--TKA-AEGWARGCGISVEQAERLATDKGEWLVHRAVIEGQPTKN 129
>sp|Q5ARE6|RHGA_EMENI Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rhgA PE=2
SV=2
Length = 507
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 15 FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLH 72
S SS T +V+ G +D TD A +AW + +Y+PPG Y +
Sbjct: 26 LTSVSSKSQTKTCNVLDYGAVADKSTDIGPALSSAWDECADG---GVVYIPPGDYAIE 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,578,702
Number of Sequences: 539616
Number of extensions: 1227465
Number of successful extensions: 3724
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3677
Number of HSP's gapped (non-prelim): 65
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)