Query 045591
Match_columns 107
No_of_seqs 154 out of 1043
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 99.9 7.9E-26 1.7E-30 181.6 10.4 97 6-103 7-103 (394)
2 PLN03010 polygalacturonase 99.9 3.6E-24 7.8E-29 172.7 11.4 80 25-104 45-126 (409)
3 PLN02218 polygalacturonase ADP 99.9 1.4E-23 3E-28 170.2 10.4 83 22-105 63-146 (431)
4 PLN02793 Probable polygalactur 99.9 2E-23 4.2E-28 169.8 9.0 79 25-104 51-130 (443)
5 PLN02188 polygalacturonase/gly 99.8 2.9E-21 6.3E-26 155.6 8.5 78 24-104 34-111 (404)
6 PLN03003 Probable polygalactur 99.8 2.9E-21 6.3E-26 157.6 6.3 90 11-103 10-100 (456)
7 COG5434 PGU1 Endopygalactoruna 99.6 2.1E-15 4.6E-20 125.3 8.1 75 24-104 80-156 (542)
8 PF12708 Pectate_lyase_3: Pect 99.6 1E-14 2.2E-19 105.3 7.0 60 26-91 1-61 (225)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.0 6.5E-10 1.4E-14 91.0 5.2 59 25-90 36-94 (455)
10 PF00295 Glyco_hydro_28: Glyco 98.1 1E-06 2.2E-11 69.2 0.8 49 54-103 1-49 (326)
11 PF12218 End_N_terminal: N ter 96.1 0.0099 2.2E-07 37.0 3.7 38 34-74 1-38 (67)
12 TIGR03805 beta_helix_1 paralle 94.5 0.068 1.5E-06 42.0 4.6 29 46-77 1-30 (314)
13 PF14592 Chondroitinas_B: Chon 85.7 1.9 4.1E-05 35.7 5.2 45 42-89 3-48 (425)
14 PRK10123 wcaM putative colanic 77.7 6.4 0.00014 31.9 5.3 32 25-67 33-64 (464)
15 PF07602 DUF1565: Protein of u 72.0 7.5 0.00016 30.0 4.3 30 45-77 17-51 (246)
16 PLN02497 probable pectinestera 70.3 17 0.00037 29.2 6.1 27 43-70 44-72 (331)
17 PF10162 G8: G8 domain; Inter 63.0 17 0.00037 24.6 4.3 34 58-99 11-47 (125)
18 PLN02176 putative pectinestera 62.0 55 0.0012 26.4 7.6 27 43-70 51-79 (340)
19 PLN02480 Probable pectinestera 60.0 18 0.0004 29.1 4.5 33 42-76 59-93 (343)
20 PF11429 Colicin_D: Colicin D; 59.6 21 0.00046 23.6 4.1 55 30-90 10-67 (92)
21 smart00720 calpain_III calpain 51.2 27 0.00058 23.7 3.7 29 61-90 107-135 (143)
22 cd00214 Calpain_III Calpain, s 51.0 27 0.00059 24.1 3.7 28 61-89 112-139 (150)
23 PLN02432 putative pectinestera 45.9 63 0.0014 25.5 5.4 27 43-70 23-51 (293)
24 PF01696 Adeno_E1B_55K: Adenov 45.3 77 0.0017 26.1 6.0 51 28-90 45-99 (386)
25 PLN02170 probable pectinestera 43.6 56 0.0012 28.0 5.1 46 43-91 237-284 (529)
26 PRK15018 1-acyl-sn-glycerol-3- 43.1 28 0.00061 26.3 3.0 25 44-69 126-150 (245)
27 PF07172 GRP: Glycine rich pro 41.6 22 0.00047 23.5 1.9 6 1-6 1-6 (95)
28 PF01095 Pectinesterase: Pecti 41.4 71 0.0015 25.0 5.1 26 44-70 13-40 (298)
29 PLN02682 pectinesterase family 40.4 69 0.0015 26.2 5.0 27 43-70 82-110 (369)
30 PLN02708 Probable pectinestera 39.2 77 0.0017 27.2 5.3 44 44-91 254-300 (553)
31 COG4677 PemB Pectin methyleste 37.7 1.2E+02 0.0026 24.9 5.9 54 41-95 92-155 (405)
32 PLN02916 pectinesterase family 37.4 80 0.0017 26.9 5.0 27 43-70 199-230 (502)
33 PLN02713 Probable pectinestera 37.4 89 0.0019 26.9 5.4 44 44-91 263-311 (566)
34 PLN02773 pectinesterase 36.7 93 0.002 24.8 5.1 27 43-70 17-45 (317)
35 TIGR03406 FeS_long_SufT probab 36.0 74 0.0016 23.1 4.1 34 57-95 13-46 (174)
36 cd07986 LPLAT_ACT14924-like Ly 36.0 43 0.00093 24.2 2.9 28 41-70 83-110 (210)
37 PF02373 JmjC: JmjC domain, hy 35.3 24 0.00051 22.4 1.3 14 58-71 87-100 (114)
38 PF03718 Glyco_hydro_49: Glyco 35.0 65 0.0014 27.9 4.2 27 59-90 232-262 (582)
39 PF12508 DUF3714: Protein of u 34.7 66 0.0014 24.0 3.8 25 62-90 84-108 (200)
40 PRK10531 acyl-CoA thioesterase 34.7 95 0.0021 25.9 5.0 28 43-70 94-123 (422)
41 PLN02304 probable pectinestera 34.5 98 0.0021 25.4 5.0 27 43-70 87-115 (379)
42 PTZ00070 40S ribosomal protein 34.4 1.3E+02 0.0028 23.5 5.4 43 40-89 123-173 (257)
43 PLN02933 Probable pectinestera 34.0 1.1E+02 0.0025 26.1 5.5 45 43-91 230-276 (530)
44 PF11103 DUF2887: Protein of u 33.4 38 0.00081 25.4 2.3 30 66-101 27-56 (200)
45 COG4588 AcfC Accessory coloniz 32.8 1E+02 0.0022 23.8 4.5 25 10-37 7-31 (252)
46 cd07991 LPLAT_LPCAT1-like Lyso 32.5 72 0.0016 23.0 3.6 25 46-70 84-109 (211)
47 COG0336 TrmD tRNA-(guanine-N1) 31.2 42 0.00092 25.9 2.3 42 26-68 35-90 (240)
48 PHA00672 hypothetical protein 31.2 89 0.0019 22.2 3.7 31 60-91 50-83 (152)
49 PLN02995 Probable pectinestera 31.1 1.3E+02 0.0029 25.7 5.4 45 43-91 235-283 (539)
50 PLN02665 pectinesterase family 30.7 1.4E+02 0.0029 24.4 5.2 27 43-70 80-108 (366)
51 PLN02201 probable pectinestera 30.2 1.3E+02 0.0029 25.6 5.3 27 43-70 218-246 (520)
52 TIGR02837 spore_II_R stage II 29.4 61 0.0013 23.8 2.7 26 59-85 123-148 (168)
53 PLN02416 probable pectinestera 29.2 1.3E+02 0.0029 25.7 5.1 45 43-91 242-288 (541)
54 PF12477 TraW_N: Sex factor F 28.4 48 0.001 17.5 1.6 7 31-37 20-26 (31)
55 PLN02990 Probable pectinestera 28.1 1.6E+02 0.0035 25.4 5.5 44 44-91 272-317 (572)
56 TIGR03119 one_C_fhcD formylmet 27.0 92 0.002 24.7 3.5 39 36-76 240-282 (287)
57 KOG2107 Uncharacterized conser 26.9 44 0.00096 24.6 1.7 14 57-70 121-134 (179)
58 cd07988 LPLAT_ABO13168-like Ly 26.8 73 0.0016 22.2 2.8 24 44-68 81-105 (163)
59 PF09551 Spore_II_R: Stage II 26.5 77 0.0017 22.2 2.8 17 60-76 89-105 (130)
60 PF02187 GAS2: Growth-Arrest-S 26.4 1.8E+02 0.0038 18.4 4.5 33 59-92 20-55 (73)
61 PF07157 DNA_circ_N: DNA circu 26.3 97 0.0021 20.4 3.1 25 41-65 60-84 (93)
62 PLN02745 Putative pectinestera 25.9 1.7E+02 0.0037 25.4 5.2 45 43-91 297-343 (596)
63 PF02741 FTR_C: FTR, proximal 25.3 91 0.002 22.5 3.0 36 39-76 108-145 (150)
64 PF07495 Y_Y_Y: Y_Y_Y domain; 24.3 42 0.00091 19.3 1.0 9 64-72 36-44 (66)
65 PLN02634 probable pectinestera 23.8 2.1E+02 0.0045 23.3 5.1 27 43-70 68-96 (359)
66 COG0204 PlsC 1-acyl-sn-glycero 23.8 1E+02 0.0022 22.1 3.1 25 44-69 125-149 (255)
67 cd07990 LPLAT_LCLAT1-like Lyso 23.7 96 0.0021 21.9 2.9 30 41-70 86-116 (193)
68 PRK13301 putative L-aspartate 23.7 84 0.0018 24.6 2.8 36 26-68 88-123 (267)
69 KOG2212 Alpha-amylase [Carbohy 23.6 56 0.0012 27.2 1.8 29 64-92 452-482 (504)
70 cd03083 TRX_Fd_NuoE_hoxF TRX-l 23.0 1.9E+02 0.0042 17.7 4.6 56 43-101 17-72 (80)
71 TIGR01020 rpsE_arch ribosomal 22.9 2.9E+02 0.0062 21.0 5.4 39 40-82 93-140 (212)
72 PF15589 Imm12: Immunity prote 22.2 1.1E+02 0.0025 22.0 3.0 18 60-77 132-149 (155)
73 PF03079 ARD: ARD/ARD' family; 22.1 62 0.0014 23.1 1.7 13 58-70 121-133 (157)
74 COG4939 Major membrane immunog 21.8 1.8E+02 0.0039 20.7 3.9 42 53-95 18-61 (147)
75 PF01067 Calpain_III: Calpain 21.7 1E+02 0.0023 20.4 2.7 17 61-77 111-127 (147)
76 COG0033 Pgm Phosphoglucomutase 20.9 1.1E+02 0.0024 26.1 3.1 38 35-73 60-97 (524)
77 PLN02671 pectinesterase 20.6 2.5E+02 0.0054 22.9 5.0 27 43-70 71-99 (359)
78 PHA03048 IMV membrane protein; 20.1 47 0.001 22.0 0.6 20 59-78 73-92 (93)
No 1
>PLN02155 polygalacturonase
Probab=99.93 E-value=7.9e-26 Score=181.60 Aligned_cols=97 Identities=35% Similarity=0.616 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcce
Q 045591 6 LLVLIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDI 85 (107)
Q Consensus 6 ~~~~~~~l~~~~~~~~a~~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i 85 (107)
++.++|-||.|-..+..+.+++||.||||++||++|+|+|||+||+++|++.+|++|+||+|+|+++|+.|+||||| |+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv 85 (394)
T PLN02155 7 TFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KI 85 (394)
T ss_pred ehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-Cc
Confidence 34444444444333333336999999999999999999999999988999889999999999999999999999999 99
Q ss_pred EEEEeeEEEccCCCCccc
Q 045591 86 TIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 86 ~l~i~GtL~a~~~~~~~~ 103 (107)
+|||+|+|++|.|+..|.
T Consensus 86 ~l~l~G~l~~~~d~~~~~ 103 (394)
T PLN02155 86 TFQVAGTVVAPEDYRTFG 103 (394)
T ss_pred eEEEeeEEECcccccccc
Confidence 999999999999887774
No 2
>PLN03010 polygalacturonase
Probab=99.91 E-value=3.6e-24 Score=172.73 Aligned_cols=80 Identities=35% Similarity=0.744 Sum_probs=72.9
Q ss_pred eEEEEeecCcccCCccchHHHHHHHHHHHhccCC-CcEEEecCC-EEEEeeEEEecccCCcceEEEEeeEEEccCCCCcc
Q 045591 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTA-DSTIYVPPG-RYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHW 102 (107)
Q Consensus 25 ~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~-g~~v~~P~G-~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~ 102 (107)
++|||.||||++||++|||+|||+||+++|...+ +++|+||+| +|+++|+.|+|||++.+++|+++|+|++|+++++|
T Consensus 45 ~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~w 124 (409)
T PLN03010 45 QNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVAW 124 (409)
T ss_pred cEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhhc
Confidence 5899999999999999999999999988886433 389999999 69999999999998658999999999999999999
Q ss_pred cc
Q 045591 103 RC 104 (107)
Q Consensus 103 ~~ 104 (107)
+.
T Consensus 125 ~~ 126 (409)
T PLN03010 125 SN 126 (409)
T ss_pred cC
Confidence 63
No 3
>PLN02218 polygalacturonase ADPG
Probab=99.90 E-value=1.4e-23 Score=170.24 Aligned_cols=83 Identities=35% Similarity=0.593 Sum_probs=77.0
Q ss_pred CCceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCC-EEEEeeEEEecccCCcceEEEEeeEEEccCCCC
Q 045591 22 IPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG-RYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSD 100 (107)
Q Consensus 22 a~~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G-~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~ 100 (107)
++++++||.||||++||++|||+|||+||+++|++.++++|+||+| +|+++|+.|+||||+ +++|+++|+|++|++++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~d~~ 141 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQKRS 141 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCCChh
Confidence 3456999999999999999999999999999999888899999999 599999999999999 99999999999999999
Q ss_pred ccccc
Q 045591 101 HWRCW 105 (107)
Q Consensus 101 ~~~~~ 105 (107)
+|+.+
T Consensus 142 ~y~~~ 146 (431)
T PLN02218 142 DYKDI 146 (431)
T ss_pred hcccc
Confidence 88653
No 4
>PLN02793 Probable polygalacturonase
Probab=99.89 E-value=2e-23 Score=169.83 Aligned_cols=79 Identities=32% Similarity=0.613 Sum_probs=75.6
Q ss_pred eEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCE-EEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 25 ~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~-Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
+++||.||||++||.+|||+|||+||+++|++.++++|+||+|+ |+++|+.|.||||| +++|+|+|+|.+|.++++|+
T Consensus 51 ~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 51 RVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred eEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHcc
Confidence 68999999999999999999999999989998889999999995 99999999999999 99999999999999999997
Q ss_pred c
Q 045591 104 C 104 (107)
Q Consensus 104 ~ 104 (107)
.
T Consensus 130 ~ 130 (443)
T PLN02793 130 G 130 (443)
T ss_pred C
Confidence 4
No 5
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.85 E-value=2.9e-21 Score=155.64 Aligned_cols=78 Identities=36% Similarity=0.681 Sum_probs=70.7
Q ss_pred ceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 24 MVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 24 ~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
.+++||+||||++||.+|||+|||+||+++|++.++++|+||+|+|+++|+.|+|||++ ...++| +|++++|+++|+
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y~ 110 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRYG 110 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHCC
Confidence 36899999999999999999999999988999888899999999999999999999976 444544 999999999996
Q ss_pred c
Q 045591 104 C 104 (107)
Q Consensus 104 ~ 104 (107)
.
T Consensus 111 ~ 111 (404)
T PLN02188 111 S 111 (404)
T ss_pred C
Confidence 4
No 6
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.84 E-value=2.9e-21 Score=157.58 Aligned_cols=90 Identities=29% Similarity=0.626 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCCceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCE-EEEeeEEEecccCCcceEEEE
Q 045591 11 FLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHNVVFQGQSRNNDITIRF 89 (107)
Q Consensus 11 ~~l~~~~~~~~a~~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~-Y~~~pi~~~gpc~s~~i~l~i 89 (107)
|.|+||....+++ ++||.||||++||.+|||+|||+||+++|++.++++|+||+|+ |+++|+.|+|||++..+++++
T Consensus 10 ~~~~~~~~~~~~~--~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i 87 (456)
T PLN03003 10 FSLFFLQIFTSSN--ALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQM 87 (456)
T ss_pred eeeeeeeeeeeee--EEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeecc
Confidence 4455655556665 8999999999999999999999999999998889999999995 899999999999874489999
Q ss_pred eeEEEccCCCCccc
Q 045591 90 DGTLGSIRLSDHWR 103 (107)
Q Consensus 90 ~GtL~a~~~~~~~~ 103 (107)
+|+|.++.. ..|+
T Consensus 88 ~G~i~ap~~-~~w~ 100 (456)
T PLN03003 88 LGKLVAPSK-GNWK 100 (456)
T ss_pred CceEecCcc-cccc
Confidence 999999875 3464
No 7
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=2.1e-15 Score=125.33 Aligned_cols=75 Identities=31% Similarity=0.512 Sum_probs=70.1
Q ss_pred ceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEE-ee-EEEccCCCCc
Q 045591 24 MVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRF-DG-TLGSIRLSDH 101 (107)
Q Consensus 24 ~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i-~G-tL~a~~~~~~ 101 (107)
...++|.+||+++||.+++++|||+| +++|.+.+|++|+||+|+|+.+||+++ | +++||+ +| ||.++.+|++
T Consensus 80 ~t~~sv~~~ga~gDG~t~~~~aiq~A-I~~ca~a~Gg~V~lPaGtylsg~l~LK----S-~~~L~l~egatl~~~~~p~~ 153 (542)
T COG5434 80 DTAFSVSDDGAVGDGATDNTAAIQAA-IDACASAGGGTVLLPAGTYLSGPLFLK----S-NVTLHLAEGATLLASSNPKD 153 (542)
T ss_pred cceeeeccccccccCCccCHHHHHHH-HHhhhhhcCceEEECCceeEeeeEEEe----c-ccEEEecCCceeeCCCChhh
Confidence 35899999999999999999999999 557888899999999999999999999 8 999999 57 9999999999
Q ss_pred ccc
Q 045591 102 WRC 104 (107)
Q Consensus 102 ~~~ 104 (107)
|+.
T Consensus 154 y~~ 156 (542)
T COG5434 154 YPS 156 (542)
T ss_pred ccc
Confidence 994
No 8
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.56 E-value=1e-14 Score=105.30 Aligned_cols=60 Identities=33% Similarity=0.601 Sum_probs=47.9
Q ss_pred EEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEee-EEEecccCCcceEEEEee
Q 045591 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHN-VVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 26 ~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~p-i~~~gpc~s~~i~l~i~G 91 (107)
.+||+||||++||.+|||+|||+|+. ..+..++++|+||+|+|++.. +.+. + +++|+.+|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~-~~~~~~g~~v~~P~G~Y~i~~~l~~~----s-~v~l~G~g 61 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAID-AAAAAGGGVVYFPPGTYRISGTLIIP----S-NVTLRGAG 61 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHH-HHCSTTSEEEEE-SEEEEESS-EEE-----T-TEEEEESS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhh-hcccCCCeEEEEcCcEEEEeCCeEcC----C-CeEEEccC
Confidence 47999999999999999999999974 346678999999999999965 8888 7 99998876
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.98 E-value=6.5e-10 Score=90.97 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=50.7
Q ss_pred eEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEe
Q 045591 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFD 90 (107)
Q Consensus 25 ~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~ 90 (107)
+.+++.+||+++||.+|+|+|||+||+++ + .++++|.+|+|+|..+++.++ + +++|+.+
T Consensus 36 r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----s-pltL~G~ 94 (455)
T TIGR03808 36 LGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----S-GAQLIGV 94 (455)
T ss_pred cCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----C-CcEEEec
Confidence 56899999999999999999999997754 4 346799999999999999998 6 7777654
No 10
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.08 E-value=1e-06 Score=69.23 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=42.7
Q ss_pred hccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 54 CGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 54 c~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
|++.++++|+||+|+|+++|+.|+++|.+ +++++|+|++.++.+...|+
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~ 49 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGP 49 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCC
Confidence 56667789999999999999999999988 99999999999997766665
No 11
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.11 E-value=0.0099 Score=36.98 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=22.1
Q ss_pred cccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeE
Q 045591 34 TKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNV 74 (107)
Q Consensus 34 a~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi 74 (107)
|+|||.+|||.||.+++.+. ..|.+|---.=+|.+..+
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeC
Confidence 68999999999999996642 455566555446887653
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=94.51 E-value=0.068 Score=42.04 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=21.5
Q ss_pred HHHHHHHHhccCCCcEEEecCCEEEE-eeEEEe
Q 045591 46 FLAAWAKACGSTADSTIYVPPGRYLL-HNVVFQ 77 (107)
Q Consensus 46 ~q~A~~~ac~~~~g~~v~~P~G~Y~~-~pi~~~ 77 (107)
||+|++.+ +.|.+|.+|+|+|.+ +++.+.
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~ 30 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLD 30 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEe
Confidence 57886643 457899999999985 555554
No 13
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=85.70 E-value=1.9 Score=35.75 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEeccc-CCcceEEEE
Q 045591 42 TTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQS-RNNDITIRF 89 (107)
Q Consensus 42 ~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc-~s~~i~l~i 89 (107)
+.++||+|+..+ +.|.+|+++.|+|.-..+.|.+.. ++.+|+|+-
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~~~GT~~~PItl~A 48 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFKGSGTAAKPITLRA 48 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-S--BTTB-EEEEE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEEecccCCCCEEEEe
Confidence 567899997754 568899999999985567776544 122566654
No 14
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=77.66 E-value=6.4 Score=31.89 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=22.5
Q ss_pred eEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCC
Q 045591 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG 67 (107)
Q Consensus 25 ~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G 67 (107)
..+|+.||.. .|.-.+|.+|+.|+ .+|++|+|
T Consensus 33 ~~vni~dy~~-----~dwiasfkqaf~e~------qtvvvpag 64 (464)
T PRK10123 33 QSVNINDYNP-----HDWIASFKQAFSEG------QTVVVPAG 64 (464)
T ss_pred ceeehhhcCc-----ccHHHHHHHHhccC------cEEEecCc
Confidence 5899999955 46778888887754 35555555
No 15
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=72.05 E-value=7.5 Score=29.96 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCCCcEEEecCCEEEE-----eeEEEe
Q 045591 45 AFLAAWAKACGSTADSTIYVPPGRYLL-----HNVVFQ 77 (107)
Q Consensus 45 A~q~A~~~ac~~~~g~~v~~P~G~Y~~-----~pi~~~ 77 (107)
-|++|+..+ +.+.+|++-+|+|.- .|+.++
T Consensus 17 Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~ 51 (246)
T PF07602_consen 17 TITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK 51 (246)
T ss_pred HHHHHHHhC---CCCCEEEECCceeccccCCcccEEec
Confidence 477775533 567899999999964 255664
No 16
>PLN02497 probable pectinesterase
Probab=70.28 E-value=17 Score=29.18 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhccCC--CcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGSTA--DSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~~--g~~v~~P~G~Y~ 70 (107)
=.-+|+|++ +..... ..+|+|-+|+|.
T Consensus 44 f~TIq~AId-avP~~~~~~~~I~Ik~G~Y~ 72 (331)
T PLN02497 44 FTTIQSAID-SVPSNNKHWFCINVKAGLYR 72 (331)
T ss_pred ccCHHHHHh-hccccCCceEEEEEeCcEEE
Confidence 346888865 434432 247999999995
No 17
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=63.04 E-value=17 Score=24.65 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCcEEEecCCEEEEee---EEEecccCCcceEEEEeeEEEccCCC
Q 045591 58 ADSTIYVPPGRYLLHN---VVFQGQSRNNDITIRFDGTLGSIRLS 99 (107)
Q Consensus 58 ~g~~v~~P~G~Y~~~p---i~~~gpc~s~~i~l~i~GtL~a~~~~ 99 (107)
.+..|+||+|+..+-. -.+. .+.|+|+|.+.++.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~~l~--------~l~I~G~L~f~~~~ 47 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTPKLG--------SLIIGGTLIFDDDR 47 (125)
T ss_pred CCCEEEECCCCEEEEcCCChhee--------EEEEEEEEEEccCC
Confidence 4678999999754422 2222 35568888888763
No 18
>PLN02176 putative pectinesterase
Probab=61.99 E-value=55 Score=26.38 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccCC--CcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGSTA--DSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~~--g~~v~~P~G~Y~ 70 (107)
=.-+|+|++. ..... ..+|+|.+|+|.
T Consensus 51 f~TIq~AIda-vP~~~~~~~~I~Ik~GvY~ 79 (340)
T PLN02176 51 FKTVQSAIDS-IPLQNQNWIRILIQNGIYR 79 (340)
T ss_pred ccCHHHHHhh-chhcCCceEEEEECCcEEE
Confidence 4568999654 34322 347899999997
No 19
>PLN02480 Probable pectinesterase
Probab=59.98 E-value=18 Score=29.09 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhccCC--CcEEEecCCEEEEeeEEE
Q 045591 42 TTKAFLAAWAKACGSTA--DSTIYVPPGRYLLHNVVF 76 (107)
Q Consensus 42 ~T~A~q~A~~~ac~~~~--g~~v~~P~G~Y~~~pi~~ 76 (107)
+=.-+|+|++.+ .... ..+|+|.+|+|. ..+.+
T Consensus 59 ~f~TIQ~AIdaa-p~~~~~~~~I~Ik~GvY~-E~V~I 93 (343)
T PLN02480 59 DFTSVQSAIDAV-PVGNSEWIIVHLRKGVYR-EKVHI 93 (343)
T ss_pred CcccHHHHHhhC-ccCCCceEEEEEcCcEEE-EEEEE
Confidence 455799996643 4321 235889999997 44444
No 20
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=59.58 E-value=21 Score=23.60 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=27.4
Q ss_pred eecCccc-CCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEe--eEEEecccCCcceEEEEe
Q 045591 30 ISLGTKS-DGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLH--NVVFQGQSRNNDITIRFD 90 (107)
Q Consensus 30 ~d~Ga~~-dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~--pi~~~gpc~s~~i~l~i~ 90 (107)
.|||..+ +.....-..|++||.+-... ..+ +..|+|+.. +.++-.|- ++..+-++
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~--~~t--v~~GtYr~~~~skV~~N~~--T~~~Vi~d 67 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKN--PDT--VEKGTYRRVKDSKVYFNPK--TNNVVIID 67 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH---TT---EE--BETTSTT-EEEEETT--TTEEEEE-
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCC--CCe--EeccceecCCCcEEEEeCC--CCeEEEEc
Confidence 4899988 55555557788897766543 345 449999954 44554553 35555444
No 21
>smart00720 calpain_III calpain_III.
Probab=51.15 E-value=27 Score=23.72 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=21.6
Q ss_pred EEEecCCEEEEeeEEEecccCCcceEEEEe
Q 045591 61 TIYVPPGRYLLHNVVFQGQSRNNDITIRFD 90 (107)
Q Consensus 61 ~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~ 90 (107)
...+|+|+|.+=|-++.....+ ...|+|-
T Consensus 107 ~~~L~~G~Y~iVPsT~~p~~~g-~F~LrV~ 135 (143)
T smart00720 107 RFRLPPGEYVIVPSTFEPNQEG-DFLLRVF 135 (143)
T ss_pred EEEcCCCCEEEEEeecCCCCcc-CEEEEEE
Confidence 4569999999999888754445 6677653
No 22
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=50.96 E-value=27 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEecCCEEEEeeEEEecccCCcceEEEE
Q 045591 61 TIYVPPGRYLLHNVVFQGQSRNNDITIRF 89 (107)
Q Consensus 61 ~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i 89 (107)
...+|+|+|.+=|-++.--..+ +..|+|
T Consensus 112 ~~~L~pG~YvIIPsT~~p~~~g-~F~LrV 139 (150)
T cd00214 112 RFRLPPGEYVIVPSTFEPGEEG-EFLLRV 139 (150)
T ss_pred EEEcCCCCEEEEeeecCCCCcc-cEEEEE
Confidence 5569999999999988744444 666665
No 23
>PLN02432 putative pectinesterase
Probab=45.87 E-value=63 Score=25.49 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~ 70 (107)
=.-+|+|++. +... ...+|+|.+|+|.
T Consensus 23 f~TIq~Aida-~p~~~~~~~~I~I~~G~Y~ 51 (293)
T PLN02432 23 FRKIQDAIDA-VPSNNSQLVFIWVKPGIYR 51 (293)
T ss_pred ccCHHHHHhh-ccccCCceEEEEEeCceeE
Confidence 4468999654 4432 2358999999994
No 24
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=45.30 E-value=77 Score=26.14 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=29.6
Q ss_pred EEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCC-EEEE-eeEEEecccC--CcceEEEEe
Q 045591 28 SVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG-RYLL-HNVVFQGQSR--NNDITIRFD 90 (107)
Q Consensus 28 ~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G-~Y~~-~pi~~~gpc~--s~~i~l~i~ 90 (107)
+|+.|=..++. |-.++|++ .++|.+-|| +|.+ ++|.+++.|. +.+-+++++
T Consensus 45 qvkt~~~~P~e--Dle~~I~~----------haKVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~ 99 (386)
T PF01696_consen 45 QVKTYWMEPGE--DLEEAIRQ----------HAKVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVN 99 (386)
T ss_pred eEEEEEcCCCc--CHHHHHHh----------cCEEEeCCCCEEEEeeeEEecceEEEECCCEEEEEe
Confidence 56666666642 53333332 245666666 5997 6999997772 213455554
No 25
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=43.59 E-value=56 Score=28.00 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhc--cCCCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 43 TKAFLAAWAKACG--STADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 43 T~A~q~A~~~ac~--~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
-.-+|+|++++.. .....+|+|.+|+|. ..|.+.. -|. ||+|.-+|
T Consensus 237 f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~-nItl~G~g 284 (529)
T PLN02170 237 HKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPT-KQK-NVMLVGDG 284 (529)
T ss_pred hhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCC-CCc-eEEEEEcC
Confidence 4568999664322 223468999999997 2333321 123 66665554
No 26
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=43.07 E-value=28 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhccCCCcEEEecCCEE
Q 045591 44 KAFLAAWAKACGSTADSTIYVPPGRY 69 (107)
Q Consensus 44 ~A~q~A~~~ac~~~~g~~v~~P~G~Y 69 (107)
.+++++ .+.+++.+...++||.|+-
T Consensus 126 ~~l~~~-~~~l~~~g~sv~IFPEGTR 150 (245)
T PRK15018 126 GTIAEV-VNHFKKRRISIWMFPEGTR 150 (245)
T ss_pred HHHHHH-HHHHHhCCCEEEEECCccC
Confidence 456665 3344544556889999983
No 27
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=41.63 E-value=22 Score=23.47 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=4.4
Q ss_pred CchhHH
Q 045591 1 MSLHIL 6 (107)
Q Consensus 1 m~~~~~ 6 (107)
|+++..
T Consensus 1 MaSK~~ 6 (95)
T PF07172_consen 1 MASKAF 6 (95)
T ss_pred CchhHH
Confidence 888854
No 28
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=41.36 E-value=71 Score=25.01 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhccCC--CcEEEecCCEEE
Q 045591 44 KAFLAAWAKACGSTA--DSTIYVPPGRYL 70 (107)
Q Consensus 44 ~A~q~A~~~ac~~~~--g~~v~~P~G~Y~ 70 (107)
.-+|+|++. +.... ..+|+|.+|+|.
T Consensus 13 ~TIq~Aida-~p~~~~~~~~I~I~~G~Y~ 40 (298)
T PF01095_consen 13 TTIQAAIDA-APDNNTSRYTIFIKPGTYR 40 (298)
T ss_dssp SSHHHHHHH-S-SSSSS-EEEEE-SEEEE
T ss_pred cCHHHHHHh-chhcCCceEEEEEeCeeEc
Confidence 348899664 35432 358999999997
No 29
>PLN02682 pectinesterase family protein
Probab=40.39 E-value=69 Score=26.18 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~ 70 (107)
=.-+|+|++ ++... ...+|+|.+|+|.
T Consensus 82 f~TIQ~AId-avP~~~~~r~vI~Ik~G~Y~ 110 (369)
T PLN02682 82 FTTIQAAID-SLPVINLVRVVIKVNAGTYR 110 (369)
T ss_pred ccCHHHHHh-hccccCCceEEEEEeCceee
Confidence 446899965 44432 2358999999996
No 30
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=39.16 E-value=77 Score=27.19 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcc---CCCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 44 KAFLAAWAKACGS---TADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 44 ~A~q~A~~~ac~~---~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
.-+|+|++++ .+ ....+|+|.+|+|. ..|.+.-. |. ||+|.-+|
T Consensus 254 ~TIq~Av~a~-p~~~~~~r~vI~vk~GvY~-E~V~i~~~-k~-~v~l~G~g 300 (553)
T PLN02708 254 KTVQEAVNAA-PDNNGDRKFVIRIKEGVYE-ETVRVPLE-KK-NVVFLGDG 300 (553)
T ss_pred cCHHHHHHhh-hhccCCccEEEEEeCceEE-eeeeecCC-Cc-cEEEEecC
Confidence 4588886544 33 23458999999997 23333211 12 66665554
No 31
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=37.66 E-value=1.2e+02 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhccCC--CcEEEecCCEEE--E------eeEEEecccCCcceEEEEeeEEEc
Q 045591 41 DTTKAFLAAWAKACGSTA--DSTIYVPPGRYL--L------HNVVFQGQSRNNDITIRFDGTLGS 95 (107)
Q Consensus 41 d~T~A~q~A~~~ac~~~~--g~~v~~P~G~Y~--~------~pi~~~gpc~s~~i~l~i~GtL~a 95 (107)
++-.-||+|++.+....+ ...|.+-+|.|. + ++|+|.|.-.+ .++..|.-.+-+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e~v~Vp~~~~~ITLyGed~~-~~~tvIg~n~aa 155 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQETVYVPAAPGGITLYGEDEK-PIDTVIGLNLAA 155 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceeceeEEecCCCCceeEEecCCC-CcceEEEEecCC
Confidence 445568888776644433 456778999884 1 34888887654 555555433333
No 32
>PLN02916 pectinesterase family protein
Probab=37.41 E-value=80 Score=26.89 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcc-----CCCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGS-----TADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~-----~~g~~v~~P~G~Y~ 70 (107)
=.-+|+|++++ .+ ....+|+|.+|+|.
T Consensus 199 f~TIq~AI~a~-P~~~~~~~~r~vI~Ik~GvY~ 230 (502)
T PLN02916 199 HRTINQALAAL-SRMGKSRTNRVIIYVKAGVYN 230 (502)
T ss_pred ccCHHHHHHhc-ccccCCCCceEEEEEeCceee
Confidence 34588886543 42 22358999999997
No 33
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=37.37 E-value=89 Score=26.91 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhccC-----CCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 44 KAFLAAWAKACGST-----ADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 44 ~A~q~A~~~ac~~~-----~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
.-+|+|++++ .+. +..+|+|.+|+|. ..|.+.-. |. ||+|.-+|
T Consensus 263 ~TIq~Av~a~-p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~-k~-~i~l~G~g 311 (566)
T PLN02713 263 TTINDAVAAA-PNNTDGSNGYFVIYVTAGVYE-EYVSIPKN-KK-YLMMIGDG 311 (566)
T ss_pred CCHHHHHHhh-hcccCCCCceEEEEEcCcEEE-EEEEecCC-Cc-eEEEEecC
Confidence 3588886543 432 2358999999996 23333211 12 56665554
No 34
>PLN02773 pectinesterase
Probab=36.70 E-value=93 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~ 70 (107)
=.-+|+|++++ ... ...+|+|.+|+|.
T Consensus 17 f~TIq~Aida~-P~~~~~~~~I~Ik~G~Y~ 45 (317)
T PLN02773 17 YCTVQDAIDAV-PLCNRCRTVIRVAPGVYR 45 (317)
T ss_pred ccCHHHHHhhc-hhcCCceEEEEEeCceEE
Confidence 44588886644 432 2358999999997
No 35
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=36.01 E-value=74 Score=23.15 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=20.6
Q ss_pred CCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEc
Q 045591 57 TADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGS 95 (107)
Q Consensus 57 ~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a 95 (107)
..|..+.+|+|+|..=.-.+- + +.|+..+|.|.-
T Consensus 13 p~g~~~~~~~~~~~~~~q~lg----g-~~t~~~~g~~~r 46 (174)
T TIGR03406 13 PSGDPITLPAGTEVTITQALG----G-NFTVVVEGNMAR 46 (174)
T ss_pred cCCCeEEcCCCCEEEEEEccC----C-eEEEEEcCeEEE
Confidence 356788899999754333333 3 666666665443
No 36
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=36.00 E-value=43 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHhccCCCcEEEecCCEEE
Q 045591 41 DTTKAFLAAWAKACGSTADSTIYVPPGRYL 70 (107)
Q Consensus 41 d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~ 70 (107)
.+..+++++ .+..+ +|+..++||.|+-.
T Consensus 83 ~~~~~~~~~-~~~L~-~G~~l~IFPEGtrs 110 (210)
T cd07986 83 KNRESLREA-LRHLK-NGGALIIFPAGRVS 110 (210)
T ss_pred hhHHHHHHH-HHHHh-CCCEEEEECCcccc
Confidence 345667776 44444 46788999999843
No 37
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=35.28 E-value=24 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=8.8
Q ss_pred CCcEEEecCCEEEE
Q 045591 58 ADSTIYVPPGRYLL 71 (107)
Q Consensus 58 ~g~~v~~P~G~Y~~ 71 (107)
.|..|++|+|.|+.
T Consensus 87 ~Ge~V~i~pg~~H~ 100 (114)
T PF02373_consen 87 PGEFVFIPPGAYHQ 100 (114)
T ss_dssp TT-EEEE-TT-EEE
T ss_pred CCCEEEECCCceEE
Confidence 47789999999874
No 38
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=35.04 E-value=65 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=16.6
Q ss_pred CcEEEecCCEEEEee---EEEecccCCcce-EEEEe
Q 045591 59 DSTIYVPPGRYLLHN---VVFQGQSRNNDI-TIRFD 90 (107)
Q Consensus 59 g~~v~~P~G~Y~~~p---i~~~gpc~s~~i-~l~i~ 90 (107)
..+|+|++|.|.+++ +.+. + |+ .++++
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----s-n~~~VYlA 262 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----S-NTKWVYLA 262 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----T-T--EEEE-
T ss_pred cceEEeCCceEEeCCCccEEEC----C-CccEEEEc
Confidence 369999999999876 5554 4 43 55554
No 39
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=34.74 E-value=66 Score=24.04 Aligned_cols=25 Identities=40% Similarity=0.704 Sum_probs=18.3
Q ss_pred EEecCCEEEEeeEEEecccCCcceEEEEe
Q 045591 62 IYVPPGRYLLHNVVFQGQSRNNDITIRFD 90 (107)
Q Consensus 62 v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~ 90 (107)
+.||+|+|+++-..|.|. .+.+.|.
T Consensus 84 ~~IPkgt~l~G~~~~~~~----Rl~i~I~ 108 (200)
T PF12508_consen 84 ILIPKGTYLYGVASFQGQ----RLLITIT 108 (200)
T ss_pred EEeCCCCEEEEEEeeecc----EEEEEEE
Confidence 458999999998888854 4555443
No 40
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=34.73 E-value=95 Score=25.88 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcc--CCCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGS--TADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~--~~g~~v~~P~G~Y~ 70 (107)
=.-+|+|++.+... ....+|+|-+|+|.
T Consensus 94 f~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~ 123 (422)
T PRK10531 94 HTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ 123 (422)
T ss_pred ccCHHHHHhhccccCCCceEEEEEeCceeE
Confidence 34588886644322 22458999999996
No 41
>PLN02304 probable pectinesterase
Probab=34.50 E-value=98 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~ 70 (107)
=.-+|+|+++ ..+. ...+|+|.+|+|.
T Consensus 87 f~TIQ~AIda-vP~~~~~r~vI~Ik~GvY~ 115 (379)
T PLN02304 87 FTTVQSAVDA-VGNFSQKRNVIWINSGIYY 115 (379)
T ss_pred ccCHHHHHhh-CcccCCCcEEEEEeCeEeE
Confidence 3458999654 3432 3457999999996
No 42
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=34.37 E-value=1.3e+02 Score=23.49 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHHhccCCCcEEEecCCEE--------EEeeEEEecccCCcceEEEE
Q 045591 40 TDTTKAFLAAWAKACGSTADSTIYVPPGRY--------LLHNVVFQGQSRNNDITIRF 89 (107)
Q Consensus 40 ~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y--------~~~pi~~~gpc~s~~i~l~i 89 (107)
.+-..|+++|+++| +. ..+.||-| | ++=|-.+.|-|.| +.+.+
T Consensus 123 kEV~~AIrKAi~~A-K~---nii~V~rg-yW~~~~g~~hTIp~~V~GK~GS--v~V~L 173 (257)
T PTZ00070 123 KEVATAIRGAIIAA-KL---NLVPVRRG-YWGNKIGEPHTVPMKVTGKCGS--VRVRL 173 (257)
T ss_pred hhHHHHHHHHHHHH-Hh---CeEEEecc-cccccCCCCCCeeeeEEEEeCe--EEEEE
Confidence 57789999997766 32 47888876 3 4445667777754 44443
No 43
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=34.05 E-value=1.1e+02 Score=26.13 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
=.-+|+|++++ ... ...+|+|-+|+|. ..|.+.-. |. +|+|.-+|
T Consensus 230 f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~-~itl~G~g 276 (530)
T PLN02933 230 FTTINEAVSAA-PNSSETRFIIYIKGGEYF-ENVELPKK-KT-MIMFIGDG 276 (530)
T ss_pred ccCHHHHHHhc-hhcCCCcEEEEEcCceEE-EEEEecCC-Cc-eEEEEEcC
Confidence 34588886543 432 3458999999997 44444311 22 66665554
No 44
>PF11103 DUF2887: Protein of unknown function (DUF2887); InterPro: IPR022573 This bacterial group of proteins has no known function.
Probab=33.42 E-value=38 Score=25.35 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCc
Q 045591 66 PGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDH 101 (107)
Q Consensus 66 ~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~ 101 (107)
++.|.+.++.+| ...++|||...-+.+..+
T Consensus 27 a~~Y~F~SvevK------q~~fRlDGvflP~~~~~~ 56 (200)
T PF11103_consen 27 AENYQFRSVEVK------QLAFRLDGVFLPPEEDPD 56 (200)
T ss_pred ccceEEecchhh------ccceecceEEeCCCCCCC
Confidence 466999999998 678999998776666443
No 45
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=32.83 E-value=1e+02 Score=23.79 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHhhccCCCceEEEEeecCcccC
Q 045591 10 IFLILFVSSSSAIPMVTYSVISLGTKSD 37 (107)
Q Consensus 10 ~~~l~~~~~~~~a~~~~~~V~d~Ga~~d 37 (107)
+++.++|+.++.+- -+|.-||..|.
T Consensus 7 i~~~~~La~s~~~~---adinlYGpGGP 31 (252)
T COG4588 7 ILLIFLLAFSSAAN---ADINLYGPGGP 31 (252)
T ss_pred HHHHHHHHhhhhhc---ceEEEecCCCC
Confidence 33344444444332 35566888664
No 46
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=32.47 E-value=72 Score=23.01 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=15.7
Q ss_pred HHHHHHHHhcc-CCCcEEEecCCEEE
Q 045591 46 FLAAWAKACGS-TADSTIYVPPGRYL 70 (107)
Q Consensus 46 ~q~A~~~ac~~-~~g~~v~~P~G~Y~ 70 (107)
..+.+.+.+++ ++...++||.|+-.
T Consensus 84 ~~~~~~~~~~~~~g~~v~iFPEGtrs 109 (211)
T cd07991 84 VVEEIKERATDPNWPPILIFPEGTTT 109 (211)
T ss_pred HHHHHHHHHhCCCCCeEEEecCcccc
Confidence 33343555554 35678999999843
No 47
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.19 E-value=42 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=27.2
Q ss_pred EEEEeecCcccCCccchHH------------HHHHHHHHHhccCCCcEEEe--cCCE
Q 045591 26 TYSVISLGTKSDGQTDTTK------------AFLAAWAKACGSTADSTIYV--PPGR 68 (107)
Q Consensus 26 ~~~V~d~Ga~~dg~~d~T~------------A~q~A~~~ac~~~~g~~v~~--P~G~ 68 (107)
++|++||......+.||++ -+-+|+..+++.+ +..+++ |.|+
T Consensus 35 ~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~-~~~vi~lsP~G~ 90 (240)
T COG0336 35 VVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAK-KAKVILLSPQGK 90 (240)
T ss_pred eecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhcc-CCeEEEECCCCC
Confidence 6677788776666667664 5778877665543 444444 8887
No 48
>PHA00672 hypothetical protein
Probab=31.19 E-value=89 Score=22.23 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=18.8
Q ss_pred cEEEecCCEEEEeeE-EEecc--cCCcceEEEEee
Q 045591 60 STIYVPPGRYLLHNV-VFQGQ--SRNNDITIRFDG 91 (107)
Q Consensus 60 ~~v~~P~G~Y~~~pi-~~~gp--c~s~~i~l~i~G 91 (107)
..|.||+|+-+++.+ .|..- -++ .+++.++|
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~ii~sG-~itV~tdg 83 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTVLIFSG-HATVFIGG 83 (152)
T ss_pred EEEeccCceeeeeeeeEeeEEEEecc-cEEEEeCC
Confidence 478899999887653 22100 013 67777776
No 49
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=31.12 E-value=1.3e+02 Score=25.74 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcc----CCCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 43 TKAFLAAWAKACGS----TADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 43 T~A~q~A~~~ac~~----~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
=.-+|+|++.+ .. .+..+|+|-+|+|.=. |.+. .-|. ||+|.-+|
T Consensus 235 f~TIq~Ai~a~-p~~~~~~~r~vI~Ik~G~Y~E~-V~i~-~~k~-~i~l~G~g 283 (539)
T PLN02995 235 FNTVQAAIDVA-GRRKVTSGRFVIYVKRGIYQEN-INVR-LNND-DIMLVGDG 283 (539)
T ss_pred ccCHHHHHHhc-ccccCCCceEEEEEeCCEeEEE-EEec-CCCC-cEEEEEcC
Confidence 34588886543 32 2346899999999632 3331 0123 66665554
No 50
>PLN02665 pectinesterase family protein
Probab=30.69 E-value=1.4e+02 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCC--CcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGSTA--DSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~~--g~~v~~P~G~Y~ 70 (107)
=.-+|+|++. ..... ..+|+|.+|+|.
T Consensus 80 f~TIq~AIda-iP~~~~~r~vI~Ik~GvY~ 108 (366)
T PLN02665 80 FKTITDAIKS-IPAGNTQRVIIDIGPGEYN 108 (366)
T ss_pred ccCHHHHHhh-CcccCCceEEEEEeCcEEE
Confidence 4468999654 44432 357889999997
No 51
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=30.16 E-value=1.3e+02 Score=25.62 Aligned_cols=27 Identities=22% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~ 70 (107)
=.-+|+|+++ ..+. ...+|+|.+|+|.
T Consensus 218 f~TIq~Ai~a-~P~~~~~r~vI~Ik~GvY~ 246 (520)
T PLN02201 218 FTTIMDAVLA-APDYSTKRYVIYIKKGVYL 246 (520)
T ss_pred ccCHHHHHHh-chhcCCCcEEEEEeCceeE
Confidence 4468888654 3432 3468999999996
No 52
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=29.39 E-value=61 Score=23.76 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=16.7
Q ss_pred CcEEEecCCEEEEeeEEEecccCCcce
Q 045591 59 DSTIYVPPGRYLLHNVVFQGQSRNNDI 85 (107)
Q Consensus 59 g~~v~~P~G~Y~~~pi~~~gpc~s~~i 85 (107)
-+.+++|+|+|.--.|.+ |..+++|+
T Consensus 123 YG~~~~PaG~YeAlrI~I-G~g~G~NW 148 (168)
T TIGR02837 123 YGNIVLPAGEYEALRILI-GEGAGANW 148 (168)
T ss_pred cCCEeccCCceEEEEEEe-cCcCCcce
Confidence 467789999998666666 33333354
No 53
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=29.21 E-value=1.3e+02 Score=25.73 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
=.-+|+|++++ .+. ...+|+|.+|+|. ..|.+.- -|. ||+|.-+|
T Consensus 242 f~TIq~Ai~a~-p~~~~~r~vI~Ik~GvY~-E~V~i~~-~k~-~i~l~G~g 288 (541)
T PLN02416 242 FSTITDAINFA-PNNSNDRIIIYVREGVYE-ENVEIPI-YKT-NIVLIGDG 288 (541)
T ss_pred ccCHHHHHHhh-hhcCCceEEEEEeCceeE-EEEecCC-CCc-cEEEEecC
Confidence 34578885543 332 2357899999996 2233310 113 66665554
No 54
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=28.39 E-value=48 Score=17.53 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=4.2
Q ss_pred ecCcccC
Q 045591 31 SLGTKSD 37 (107)
Q Consensus 31 d~Ga~~d 37 (107)
|.|..|+
T Consensus 20 dLG~~G~ 26 (31)
T PF12477_consen 20 DLGVIGP 26 (31)
T ss_pred hcccccc
Confidence 6666653
No 55
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=28.06 E-value=1.6e+02 Score=25.38 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccC--CCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 44 KAFLAAWAKACGST--ADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 44 ~A~q~A~~~ac~~~--~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
.-+|+|++++ .+. ...+|+|.+|+|.= .|.+.- -|. ||+|.-+|
T Consensus 272 ~TIq~Av~a~-p~~~~~r~vI~Ik~GvY~E-~V~i~~-~k~-~i~l~G~g 317 (572)
T PLN02990 272 KTINEALNAV-PKANQKPFVIYIKQGVYNE-KVDVTK-KMT-HVTFIGDG 317 (572)
T ss_pred cCHHHHHhhC-cccCCceEEEEEeCceeEE-EEEecC-CCC-cEEEEecC
Confidence 3588886543 432 23589999999972 233321 112 56655554
No 56
>TIGR03119 one_C_fhcD formylmethanofuran--tetrahydromethanopterin N-formyltransferase. Members of this protein family are the FhcD protein of tetrahydromethanopterin (H4MPT)-dependent C-1 carrier metabolism. In the archaea, FhcD is designated formylmethanofuran--tetrahydromethanopterin N-formyltransferase, while in bacteria it is commonly designated as formyltransferase/hydrolase complex subunit D. FhcD is essential for one-carbon metabolism in at least three groups of prokaryotes: methanogenic archaea, sulfate-reducing archaea, and methylotrophic bacteria.
Probab=26.98 E-value=92 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=27.7
Q ss_pred cCCccch--HHHHHHHHHHHhccCCCcEEEecCCEE--EEeeEEE
Q 045591 36 SDGQTDT--TKAFLAAWAKACGSTADSTIYVPPGRY--LLHNVVF 76 (107)
Q Consensus 36 ~dg~~d~--T~A~q~A~~~ac~~~~g~~v~~P~G~Y--~~~pi~~ 76 (107)
-||.+.+ .+|.+..+.++|.. .+++.|.+|+| .++|-+|
T Consensus 240 IdGl~~~aV~~Amr~Gi~Aa~~~--~Gv~~IsAGNYGGkLG~~~f 282 (287)
T TIGR03119 240 IDGLNEAAIAEAMRVGILAATEI--PGVVKITAGNYGGKLGPHHI 282 (287)
T ss_pred EcCCCHHHHHHHHHHHHHHHhcC--CCeEEEecCccCCCCCcceE
Confidence 3554444 78888888877763 68999999999 5665444
No 57
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.89 E-value=44 Score=24.65 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.8
Q ss_pred CCCcEEEecCCEEE
Q 045591 57 TADSTIYVPPGRYL 70 (107)
Q Consensus 57 ~~g~~v~~P~G~Y~ 70 (107)
..|.-|++|+|.|+
T Consensus 121 ekGDlivlPaGiyH 134 (179)
T KOG2107|consen 121 EKGDLIVLPAGIYH 134 (179)
T ss_pred ecCCEEEecCccee
Confidence 45788999999986
No 58
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=26.76 E-value=73 Score=22.24 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhccC-CCcEEEecCCE
Q 045591 44 KAFLAAWAKACGST-ADSTIYVPPGR 68 (107)
Q Consensus 44 ~A~q~A~~~ac~~~-~g~~v~~P~G~ 68 (107)
.+++++ .+.+++. +...++||.|+
T Consensus 81 ~~~~~~-~~~l~~g~~~~l~IFPEGt 105 (163)
T cd07988 81 GLVEQV-VEEFRRREEFVLAIAPEGT 105 (163)
T ss_pred cHHHHH-HHHHHhCCCcEEEEeCCCC
Confidence 344444 3333432 23578999997
No 59
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=26.51 E-value=77 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=12.2
Q ss_pred cEEEecCCEEEEeeEEE
Q 045591 60 STIYVPPGRYLLHNVVF 76 (107)
Q Consensus 60 ~~v~~P~G~Y~~~pi~~ 76 (107)
+.+++|+|+|.--.|.+
T Consensus 89 G~~~~PaG~YeAlrI~I 105 (130)
T PF09551_consen 89 GDIVLPAGEYEALRITI 105 (130)
T ss_pred CCEeccCCceEEEEEEe
Confidence 56778999987655555
No 60
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=26.35 E-value=1.8e+02 Score=18.44 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=20.3
Q ss_pred CcEEEecCCEEEEee---EEEecccCCcceEEEEeeE
Q 045591 59 DSTIYVPPGRYLLHN---VVFQGQSRNNDITIRFDGT 92 (107)
Q Consensus 59 g~~v~~P~G~Y~~~p---i~~~gpc~s~~i~l~i~Gt 92 (107)
-.+..+++|+|.++. +.+.---.+ ++.+++.|.
T Consensus 20 f~v~rv~~GkYr~g~~~~l~~~ril~~-~vMVRVGGG 55 (73)
T PF02187_consen 20 FPVERVSEGKYRFGDSKKLFFVRILRS-HVMVRVGGG 55 (73)
T ss_dssp --EEEEETTEEE-ETTEEEEEEEETTT-EEEEEETTE
T ss_pred eeEEEeCCCceEeCCCceEEEEEEeCC-EEEEEeCCc
Confidence 357889999999864 333221235 888888863
No 61
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=26.30 E-value=97 Score=20.36 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHhccCCCcEEEec
Q 045591 41 DTTKAFLAAWAKACGSTADSTIYVP 65 (107)
Q Consensus 41 d~T~A~q~A~~~ac~~~~g~~v~~P 65 (107)
||-.+=.+++.++|.+.|.++++-|
T Consensus 60 ~dy~~~~~~L~~al~~~G~G~LvHP 84 (93)
T PF07157_consen 60 DDYEAQRDALIAALEAPGPGELVHP 84 (93)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEecC
Confidence 4444445556777888888888766
No 62
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=25.90 E-value=1.7e+02 Score=25.43 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEEEeeEEEecccCCcceEEEEee
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~G 91 (107)
=.-+|+|+++ .... ...+|+|.+|+|.= .|.+.-. |. ||+|.-+|
T Consensus 297 f~TIq~Ai~a-~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g 343 (596)
T PLN02745 297 FTTISDALAA-MPAKYEGRYVIYVKQGIYDE-TVTVDKK-MV-NVTMYGDG 343 (596)
T ss_pred cccHHHHHHh-ccccCCceEEEEEeCCeeEE-EEEEcCC-Cc-eEEEEecC
Confidence 3468888653 3432 34689999999972 2333211 12 56665554
No 63
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=25.27 E-value=91 Score=22.46 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHHHHhccCCCcEEEecCCEE--EEeeEEE
Q 045591 39 QTDTTKAFLAAWAKACGSTADSTIYVPPGRY--LLHNVVF 76 (107)
Q Consensus 39 ~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y--~~~pi~~ 76 (107)
...-.+|.+..+.++| ...+++.|.+|+| .++|-+|
T Consensus 108 ~~av~~Amr~Gi~Aa~--~~~Gv~~IsAGNYGGkLG~~~f 145 (150)
T PF02741_consen 108 EEAVAEAMRAGIEAAC--AVPGVVRISAGNYGGKLGPYHF 145 (150)
T ss_dssp HHHHHHHHHHHHHHHT--TSTTEEEEE---STTSSSSEEE
T ss_pred HHHHHHHHHHHHHHHh--cCCCeEEEecCCcCCccCccee
Confidence 4456778888877777 3568999999998 4665554
No 64
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.33 E-value=42 Score=19.32 Aligned_cols=9 Identities=56% Similarity=1.375 Sum_probs=5.9
Q ss_pred ecCCEEEEe
Q 045591 64 VPPGRYLLH 72 (107)
Q Consensus 64 ~P~G~Y~~~ 72 (107)
+|+|+|.+.
T Consensus 36 L~~G~Y~l~ 44 (66)
T PF07495_consen 36 LPPGKYTLE 44 (66)
T ss_dssp --SEEEEEE
T ss_pred CCCEEEEEE
Confidence 899999874
No 65
>PLN02634 probable pectinesterase
Probab=23.85 E-value=2.1e+02 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~ 70 (107)
=.-+|+|++. +.+. ...+|+|-+|+|.
T Consensus 68 f~TIQaAIda-~P~~~~~r~vI~Ik~GvY~ 96 (359)
T PLN02634 68 FRSVQDAVDS-VPKNNTMSVTIKINAGFYR 96 (359)
T ss_pred ccCHHHHHhh-CcccCCccEEEEEeCceEE
Confidence 4468999664 4442 2357999999996
No 66
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=23.80 E-value=1e+02 Score=22.11 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhccCCCcEEEecCCEE
Q 045591 44 KAFLAAWAKACGSTADSTIYVPPGRY 69 (107)
Q Consensus 44 ~A~q~A~~~ac~~~~g~~v~~P~G~Y 69 (107)
..+.++.... .+.+...++||.|+-
T Consensus 125 ~~~~~~~~~~-~~~g~~l~iFPEGtr 149 (255)
T COG0204 125 ETLRAAVARL-KAGGRSLVIFPEGTR 149 (255)
T ss_pred HHHHHHHHHH-HhCCcEEEECCCcCc
Confidence 5666664433 444568899999985
No 67
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=23.73 E-value=96 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHhcc-CCCcEEEecCCEEE
Q 045591 41 DTTKAFLAAWAKACGS-TADSTIYVPPGRYL 70 (107)
Q Consensus 41 d~T~A~q~A~~~ac~~-~~g~~v~~P~G~Y~ 70 (107)
.|..++.+.+.+..+. .+...++||.|+..
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~ 116 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGTRF 116 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCcccCC
Confidence 4566777775544332 25578999999843
No 68
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=23.72 E-value=84 Score=24.57 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=22.8
Q ss_pred EEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCE
Q 045591 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR 68 (107)
Q Consensus 26 ~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~ 68 (107)
.+-|..-||-.| ++|.+.+.++++ .++.+|++|+|=
T Consensus 88 dlvv~SvGALaD------~~~~~~l~~~A~-~~g~~i~ipSGA 123 (267)
T PRK13301 88 DMIICSAGALAD------DALRARLIAAAE-AGGARIRVPAGA 123 (267)
T ss_pred CEEEEChhHhcC------HHHHHHHHHHHH-hCCCEEEEeChH
Confidence 455666677654 234444455545 478899999984
No 69
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=23.57 E-value=56 Score=27.22 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=21.1
Q ss_pred ecCCEE--EEeeEEEecccCCcceEEEEeeE
Q 045591 64 VPPGRY--LLHNVVFQGQSRNNDITIRFDGT 92 (107)
Q Consensus 64 ~P~G~Y--~~~pi~~~gpc~s~~i~l~i~Gt 92 (107)
+|+|+| ++.--...|.|.++.||+.=+|+
T Consensus 452 LPAGtYCDviSG~~~~g~CtG~~iTV~~dg~ 482 (504)
T KOG2212|consen 452 LPAGTYCDVISGDKINGNCTGIKITVSDDGK 482 (504)
T ss_pred CCCCceeeeecccccCCceeeeEEEEccCCc
Confidence 799998 45556677889765677766663
No 70
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=23.03 E-value=1.9e+02 Score=17.72 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCc
Q 045591 43 TKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDH 101 (107)
Q Consensus 43 T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~ 101 (107)
.+++.+++.+......+.+ =+.|+|.+.++-=-|.|.. .-.+.++|++...-.+++
T Consensus 17 a~~v~~~l~~~l~~~~~~~--t~d~~v~l~~~gClG~C~~-~P~v~V~~~~y~~v~~~~ 72 (80)
T cd03083 17 YKAVLDALCRELGIRFGEV--DEDGMVGLFFTSCTGLCDQ-GPALLINNRVFTRLTPGR 72 (80)
T ss_pred HHHHHHHHHHHHCCCCCCc--CCCCeEEEEEeceecCcCC-CCeEEECCEEECCCCHHH
Confidence 4556666665554333221 1778888888888899965 556677887665555444
No 71
>TIGR01020 rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type). This model finds eukaryotic ribosomal protein S2 as well as archaeal ribosomal protein S5.
Probab=22.94 E-value=2.9e+02 Score=20.96 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHhccCCCcEEEecC--CEE-------EEeeEEEecccCC
Q 045591 40 TDTTKAFLAAWAKACGSTADSTIYVPP--GRY-------LLHNVVFQGQSRN 82 (107)
Q Consensus 40 ~d~T~A~q~A~~~ac~~~~g~~v~~P~--G~Y-------~~~pi~~~gpc~s 82 (107)
.+-..|+++|...| +. ..+.||- |.| ++=|-.+.|-|.|
T Consensus 93 ~ev~~AI~kA~~~A-k~---n~i~V~rg~g~w~~~~~~~hTIp~~v~Gk~gs 140 (212)
T TIGR01020 93 KEVAPAIRKAIINA-KL---NIIPVRRGCGSWECGCGRPHSVPFKVTGKCGS 140 (212)
T ss_pred chHHHHHHHHHHHH-Hh---CEEEEecccccccccCCCCCcEeEEEEEEEcc
Confidence 57889999997766 32 4788888 333 2334456666644
No 72
>PF15589 Imm12: Immunity protein 12
Probab=22.17 E-value=1.1e+02 Score=22.01 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=14.0
Q ss_pred cEEEecCCEEEEeeEEEe
Q 045591 60 STIYVPPGRYLLHNVVFQ 77 (107)
Q Consensus 60 ~~v~~P~G~Y~~~pi~~~ 77 (107)
..|-+|+|+|.++.-.++
T Consensus 132 l~V~l~~Gry~Vraa~~e 149 (155)
T PF15589_consen 132 LEVDLPPGRYRVRAAHVE 149 (155)
T ss_pred EEEecCCceEEEEEEEec
Confidence 356789999998877776
No 73
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=22.15 E-value=62 Score=23.11 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=8.0
Q ss_pred CCcEEEecCCEEE
Q 045591 58 ADSTIYVPPGRYL 70 (107)
Q Consensus 58 ~g~~v~~P~G~Y~ 70 (107)
.|.-|.+|+|+|+
T Consensus 121 ~GDli~vP~g~~H 133 (157)
T PF03079_consen 121 KGDLIVVPAGTYH 133 (157)
T ss_dssp TTCEEEE-TT--E
T ss_pred CCCEEecCCCCce
Confidence 4678889999987
No 74
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=21.84 E-value=1.8e+02 Score=20.69 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=23.0
Q ss_pred HhccCCCcEEEecCCEEEEeeEEEecc-cCCcceEEEEe-eEEEc
Q 045591 53 ACGSTADSTIYVPPGRYLLHNVVFQGQ-SRNNDITIRFD-GTLGS 95 (107)
Q Consensus 53 ac~~~~g~~v~~P~G~Y~~~pi~~~gp-c~s~~i~l~i~-GtL~a 95 (107)
+|.........||.|+|...--.|.-. .+. -+++.++ |.|.+
T Consensus 18 aCg~sd~s~~t~~dGtY~~~y~~fDd~gwk~-f~~iti~dGKiv~ 61 (147)
T COG4939 18 ACGKSDFSKMTFNDGTYQGHYESFDDHGWKA-FVTITIQDGKIVA 61 (147)
T ss_pred HhcccccccccccCCceeeeeccccccCccc-eEEEEEeCCEEEE
Confidence 344443445668888887765555421 233 5566665 55543
No 75
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.
Probab=21.71 E-value=1e+02 Score=20.45 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=13.1
Q ss_pred EEEecCCEEEEeeEEEe
Q 045591 61 TIYVPPGRYLLHNVVFQ 77 (107)
Q Consensus 61 ~v~~P~G~Y~~~pi~~~ 77 (107)
...+|+|+|.+=|-++.
T Consensus 111 ~~~L~~G~YvIVPsT~~ 127 (147)
T PF01067_consen 111 EFTLPPGTYVIVPSTYE 127 (147)
T ss_dssp EEEE-SEEEEEEEEESS
T ss_pred EEEcCCCCEEEEEecCC
Confidence 45689999999888876
No 76
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=20.88 E-value=1.1e+02 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=31.1
Q ss_pred ccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEee
Q 045591 35 KSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHN 73 (107)
Q Consensus 35 ~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~p 73 (107)
.+|+..-+.+++|+++. ...+++-.+|++..|.|+-.|
T Consensus 60 G~D~~~~se~a~~~~le-v~aANgv~~iv~~~~g~~~TP 97 (524)
T COG0033 60 GGDTHALSEPAIQSALE-VLAANGVEVIVQGQGGFTPTP 97 (524)
T ss_pred CCCcccccHHHHHHHHH-HHHhcCceEEEecCCCccCch
Confidence 57889999999999944 556667788999999998766
No 77
>PLN02671 pectinesterase
Probab=20.55 E-value=2.5e+02 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccC--CCcEEEecCCEEE
Q 045591 43 TKAFLAAWAKACGST--ADSTIYVPPGRYL 70 (107)
Q Consensus 43 T~A~q~A~~~ac~~~--~g~~v~~P~G~Y~ 70 (107)
=.-+|+|++. +... ...+|+|-+|+|.
T Consensus 71 f~TIQ~AIda-vP~~~~~~~~I~Ik~GvY~ 99 (359)
T PLN02671 71 SLTVQGAVDM-VPDYNSQRVKIYILPGIYR 99 (359)
T ss_pred ccCHHHHHHh-chhcCCccEEEEEeCceEE
Confidence 4468889654 3432 2458999999996
No 78
>PHA03048 IMV membrane protein; Provisional
Probab=20.11 E-value=47 Score=22.02 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=16.4
Q ss_pred CcEEEecCCEEEEeeEEEec
Q 045591 59 DSTIYVPPGRYLLHNVVFQG 78 (107)
Q Consensus 59 g~~v~~P~G~Y~~~pi~~~g 78 (107)
+.++++|.|||...++.+.|
T Consensus 73 ~~~~~~~~~Rynss~ieln~ 92 (93)
T PHA03048 73 PSKVVIDNGRYNSSQIELNG 92 (93)
T ss_pred CCcccCccceecCCccccCC
Confidence 57889999999988777754
Done!