BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045598
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 133/519 (25%), Positives = 199/519 (38%), Gaps = 122/519 (23%)
Query: 21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFG------------- 67
K L L ++ N F G IP ++ +L + S N G++P FG
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 68 ------------NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN 115
M+ L+ LDLS N +GE+PE L +L L LS+NN G +
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-- 383
Query: 116 FNLTN-----LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 170
NL L+ L L+ + F G+IP +LS CS L L+L+ N LSG IP LG+L++L+
Sbjct: 384 -NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 171 CIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 230
+ + N LEG IP E N+++G +PS
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 484
Query: 231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXX 290
NC++L + LS NRL G I W+ L L+ L L +N+ G +P
Sbjct: 485 ------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 291 XXXXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCN- 349
+G IP+ + +I F K YI G+ C+
Sbjct: 539 WLDLNTNLFNGTIPAAM----FKQSGKIAANF-IAGKRYVYIKN-------DGMKKECHG 586
Query: 350 -----KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP 404
+ G Q+ L+ N++ G TF N + LD+S N L+G IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 405 HQLVELKTLEVFSVAYNNLSGEIPEWT--------------------------------- 431
++ + L + ++ +N++SG IP+
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 432 --------------AQFATFNESSYEGNTFLCGLPLPIC 456
QF TF + + N LCG PLP C
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 182/417 (43%), Gaps = 49/417 (11%)
Query: 23 LGMLDISNNNFRGHIPVE--IADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
L +LD+S N+ G V ++D L S N + G + S L+FLD+S+N
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSN 207
Query: 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFN-LTNLKWLQLEGSRFVGEIPQSL 139
+ + IP C L+ L +S N L G FSR + T LK L + ++FVG IP
Sbjct: 208 NFSTGIP--FLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLP 264
Query: 140 SKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXX 198
K SL+ L L N +G+IP +L G L + + NH G +P F
Sbjct: 265 LK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 199 SDNNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
S NN SG LP + +K + LS N G+L +SL+TLDLS N +G I
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI- 381
Query: 257 DWVDGLSQ-----LSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTT 311
+ L Q L L L +N G++P G IPS +
Sbjct: 382 --LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-- 437
Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLS 371
LS L L L N L G IP ++ + ++TL L
Sbjct: 438 --------------------------LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 372 HNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+LTG IPS SN + + LSNN+L G+IP + L+ L + ++ N+ SG IP
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/458 (26%), Positives = 186/458 (40%), Gaps = 117/458 (25%)
Query: 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
L LD+S+NNF IP G+ LQ LD+S N L
Sbjct: 199 LEFLDVSSNNFSTGIPF--------------------------LGDCSALQHLDISGNKL 232
Query: 83 TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS-K 141
+G+ ++ C L+ L +S+N G + L +L++L L ++F GEIP LS
Sbjct: 233 SGDFSRAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCXXXXXXXXXXSD 200
C +L GL L+ N G +P + G+ + L+ + + +N+ G +P++ S
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 201 NNISGSLPSCFHPLS----------------------------IKQVHLSKNMLHGQLKR 232
N SG LP LS +++++L N G++
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 233 GTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXX 292
T NCS LV+L LS+N L+G+I + LS+L L L N LEGE+P
Sbjct: 410 -TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP------------ 456
Query: 293 XXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 352
+ + Y+ L L L N L
Sbjct: 457 ----------------------------------QELMYVKT------LETLILDFNDLT 476
Query: 353 GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKT 412
G IP + N T + ++LS+N LTG IP L+ + L LSNN +G IP +L + ++
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 413 LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450
L + N +G IP A F +S F+ G
Sbjct: 537 LIWLDLNTNLFNGTIPA-----AMFKQSGKIAANFIAG 569
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 178/437 (40%), Gaps = 64/437 (14%)
Query: 77 LSNNH-----------------------LTGEIPEHLAVG-CVNLRFLALSNNNLQ---- 108
LSN+H L+G + ++G C L+FL +S+N L
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 109 --GHMFSRNFNLTN----------------------LKWLQLEGSRFVGEIPQSLSKCSS 144
G + + + + LK L + G++ G++ +S+C +
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVN 198
Query: 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNIS 204
LE L +++N+ S IP +LG+ + LQ + + N L G S N
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 205 GSLPSCFHPLSIKQVH---LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261
G +P PL +K + L++N G++ C +L LDLS N G++ +
Sbjct: 258 GPIP----PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 262 LSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXX-XXXHGPIPSCFDNTTLHEKKQIRE 320
S L L L NN GE+P+ G +P N +
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
F+ + + Q + L L L N G IP + N + + +L+LS N L+G+IP
Sbjct: 374 SNNFSGPILPNLCQNPK-NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 381 STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 440
S+ +L + L L N L G+IP +L+ +KTLE + +N+L+GEIP + N
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 441 SYEGNTFLCGLPLPICR 457
S N +P I R
Sbjct: 493 SLSNNRLTGEIPKWIGR 509
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
+SL N+ L G I + L +L +SNN+F G+IP E+ D SL + + N +G+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGT 550
Query: 62 IPSSFGNMKFLQFLDLSNN-------------------HLTGEIPEHLAVGCVNLRFLAL 102
IP++ F Q ++ N H G + E + L L+
Sbjct: 551 IPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 103 SN-----NNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156
N + + G S F N ++ +L + + G IP+ + L L L +N +S
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 157 GKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLP 208
G IP +G+L L + + +N L+G IP S+NN+SG +P
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 136/527 (25%), Positives = 204/527 (38%), Gaps = 120/527 (22%)
Query: 11 GPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFG--- 67
GP +P K L L ++ N F G IP ++ +L + S N G++P FG
Sbjct: 261 GP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 68 ----------------------NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNN 105
M+ L+ LDLS N +GE+PE L +L L LS+N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 106 NLQGHMF---SRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 162
N G + +N T L+ L L+ + F G+IP +LS CS L L+L+ N LSG IP
Sbjct: 379 NFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 163 LGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLS 222
LG+L++L+ + + N LEG IP E N+++G +PS
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS---------- 487
Query: 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIX 282
NC++L + LS NRL G I W+ L L+ L L +N+ G +P
Sbjct: 488 --------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 283 XXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS 342
+G IP+ + +I F K YI
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANF-IAGKRYVYIKN-------D 581
Query: 343 GLDLSCN------KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
G+ C+ + G Q+ L+ N++ G TF N + LD+S
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT------------------------- 431
N L+G IP ++ + L + ++ +N++SG IP+
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 432 ----------------------AQFATFNESSYEGNTFLCGLPLPIC 456
QF TF + + N LCG PLP C
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 182/417 (43%), Gaps = 49/417 (11%)
Query: 23 LGMLDISNNNFRGHIPVE--IADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
L +LD+S N+ G V ++D L S N + G + S L+FLD+S+N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSN 210
Query: 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFN-LTNLKWLQLEGSRFVGEIPQSL 139
+ + IP C L+ L +S N L G FSR + T LK L + ++FVG IP
Sbjct: 211 NFSTGIP--FLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLP 267
Query: 140 SKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXX 198
K SL+ L L N +G+IP +L G L + + NH G +P F
Sbjct: 268 LK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 199 SDNNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
S NN SG LP + +K + LS N G+L +SL+TLDLS N +G I
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI- 384
Query: 257 DWVDGLSQ-----LSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTT 311
+ L Q L L L +N G++P G IPS +
Sbjct: 385 --LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-- 440
Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLS 371
LS L L L N L G IP ++ + ++TL L
Sbjct: 441 --------------------------LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 372 HNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+LTG IPS SN + + LSNN+L G+IP + L+ L + ++ N+ SG IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/458 (26%), Positives = 186/458 (40%), Gaps = 117/458 (25%)
Query: 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
L LD+S+NNF IP G+ LQ LD+S N L
Sbjct: 202 LEFLDVSSNNFSTGIPF--------------------------LGDCSALQHLDISGNKL 235
Query: 83 TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS-K 141
+G+ ++ C L+ L +S+N G + L +L++L L ++F GEIP LS
Sbjct: 236 SGDFSRAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCXXXXXXXXXXSD 200
C +L GL L+ N G +P + G+ + L+ + + +N+ G +P++ S
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 201 NNISGSLPSCFHPLS----------------------------IKQVHLSKNMLHGQLKR 232
N SG LP LS +++++L N G++
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 233 GTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXX 292
T NCS LV+L LS+N L+G+I + LS+L L L N LEGE+P
Sbjct: 413 -TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP------------ 459
Query: 293 XXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 352
+ + Y+ L L L N L
Sbjct: 460 ----------------------------------QELMYVKT------LETLILDFNDLT 479
Query: 353 GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKT 412
G IP + N T + ++LS+N LTG IP L+ + L LSNN +G IP +L + ++
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 413 LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450
L + N +G IP A F +S F+ G
Sbjct: 540 LIWLDLNTNLFNGTIPA-----AMFKQSGKIAANFIAG 572
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 178/437 (40%), Gaps = 64/437 (14%)
Query: 77 LSNNH-----------------------LTGEIPEHLAVG-CVNLRFLALSNNNLQ---- 108
LSN+H L+G + ++G C L+FL +S+N L
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 109 --GHMFSRNFNLTN----------------------LKWLQLEGSRFVGEIPQSLSKCSS 144
G + + + + LK L + G++ G++ +S+C +
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVN 201
Query: 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNIS 204
LE L +++N+ S IP +LG+ + LQ + + N L G S N
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 205 GSLPSCFHPLSIKQVH---LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261
G +P PL +K + L++N G++ C +L LDLS N G++ +
Sbjct: 261 GPIP----PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 262 LSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXX-XXXHGPIPSCFDNTTLHEKKQIRE 320
S L L L NN GE+P+ G +P N +
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
F+ + + Q + L L L N G IP + N + + +L+LS N L+G+IP
Sbjct: 377 SNNFSGPILPNLCQNPK-NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 381 STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 440
S+ +L + L L N L G+IP +L+ +KTLE + +N+L+GEIP + N
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 441 SYEGNTFLCGLPLPICR 457
S N +P I R
Sbjct: 496 SLSNNRLTGEIPKWIGR 512
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 22/228 (9%)
Query: 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
+SL N+ L G I + L +L +SNN+F G+IP E+ D SL + + N +G+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGT 553
Query: 62 IPSSF----GNMK--FL---QFLDLSNN------HLTGEIPEHLAVGCVNLRFLALSN-- 104
IP++ G + F+ +++ + N+ H G + E + L L+ N
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 105 ---NNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP 160
+ + G S F N ++ +L + + G IP+ + L L L +N +SG IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 161 RWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLP 208
+G+L L + + +N L+G IP S+NN+SG +P
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 129/316 (40%), Gaps = 64/316 (20%)
Query: 150 LNNNSLSG-------KIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCXXXXXXXXXXSDN 201
+NN LSG IP L NL L + + N+L GPIP +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 202 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261
N+SG++P Q+K +LVTLD SYN L+G++ +
Sbjct: 112 NVSGAIPDFLS----------------QIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 262 LSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQI-RE 320
L L + N + G +P +G F + T+ + +
Sbjct: 148 LPNLVGITFDGNRISGAIP-----------------DSYGSFSKLFTSMTISRNRLTGKI 190
Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
F N+A++ DLS N L G + G+ Q ++L+ N+L +
Sbjct: 191 PPTFANLNLAFV------------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL- 237
Query: 381 STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 440
K + LDL NN++ G +P L +LK L +V++NNL GEIP+ F+ S
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Query: 441 SYEGNTFLCGLPLPIC 456
+Y N LCG PLP C
Sbjct: 297 AYANNKCLCGSPLPAC 312
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNM-KFLQFLDLSN 79
K L LD S N G +P I+ LP+L N + G+IP S+G+ K + +S
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 80 NHLTGEIPEHLAVGCVNLRFLALSNNNLQGH---MFSRNFNL------------------ 118
N LTG+IP A +NL F+ LS N L+G +F + N
Sbjct: 184 NRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 119 --TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
NL L L +R G +PQ L++ L L ++ N+L G+IP+ GNL R N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300
Query: 177 NHLEGPIPVEFC 188
N P+ C
Sbjct: 301 NKCLCGSPLPAC 312
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 62 IPSSFGNMKFLQFLDLSN-NHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
IPSS N+ +L FL + N+L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
L +L + + G IP LS+ +L L + N+LSG +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 181 GPIPVEF-CXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ---------- 229
G IP + S N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 230 ------LKRGTFFN------CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 277
K F+ +L LDL NR+ G++ + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 278 EVP 280
E+P
Sbjct: 283 EIP 285
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 364 RIQTLNLSHNNLTGS--IPSTFSNLKYVESLDLSN-NKLNGKIPHQLVELKTLEVFSVAY 420
R+ L+LS NL IPS+ +NL Y+ L + N L G IP + +L L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 421 NNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNS 480
N+SG IP++ +Q T + N LP I P + GN + D
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 481 FFITFTTSYVI 491
F TS I
Sbjct: 171 SFSKLFTSMTI 181
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 155/403 (38%), Gaps = 85/403 (21%)
Query: 68 NMKFLQFLDLSNNHLTG-EIPEHLAVGCVNLRFLALSNNNL------------QGHMFSR 114
N++ L+ L L +NH++ +PE+ NL+ L NN + Q S
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQ--NLKVLDFQNNAIHYISRKDTNSLEQATNLSL 183
Query: 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLY----LNNNSLSGKIPRWLGNLTRLQ 170
NFN ++K + E F+ +I QSL SL L N++L WLG
Sbjct: 184 NFNGNDIKGI--EPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQS---LWLGTFEDTD 238
Query: 171 CIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 230
+ + EG C +S++ ++L K+ L
Sbjct: 239 DQYLTSATFEG-----LC------------------------DMSVESINLQKHRF-SDL 268
Query: 231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXX 290
TF + + LDL+ LNG + ++G++ L L+L N+ + I
Sbjct: 269 SSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINA------- 320
Query: 291 XXXXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
PS D L+ K +R K + T+ + + L L LDLS +
Sbjct: 321 ----------ASFPSLRD---LYIKGNMR-KLDLGTRCL------EKLENLQKLDLSHSD 360
Query: 351 LIGP--IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV 408
+ LQ+ NL +Q LNLS+N G F +E LD++ L+ K PH
Sbjct: 361 IEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPF 420
Query: 409 E-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450
+ L L V ++++ L A + +GN+F G
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 332 IYQGKVLSLLSGLDL----SCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 387
I + +L ++ L++ SCN L+ L + L+LSHN+LTG S+LK
Sbjct: 465 ISKTNLLQMVGSLEILILSSCN-LLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLK 523
Query: 388 YVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
+ L++++N + PH L L + ++++N L
Sbjct: 524 GL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 35/227 (15%)
Query: 200 DNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
+N IS P F PL +++++LSKN QLK +L L + N +
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKN----QLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 259 VDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQI 318
+GL+Q+ + LG N L+ S +N K++
Sbjct: 141 FNGLNQMIVVELGTNPLKS---------------------------SGIENGAFQGMKKL 173
Query: 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
NI I QG SL + L L NK+ + L + L LS N+++
Sbjct: 174 -SYIRIADTNITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425
+ +N ++ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 232 DNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 427
L+L +N +T F NLK + +L L NNK++ P L LE ++ N L E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 428 PE 429
PE
Sbjct: 116 PE 117
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 35/227 (15%)
Query: 200 DNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
+N IS P F PL +++++LSKN QLK +L L + N +
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKN----QLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 259 VDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQI 318
+GL+Q+ + LG N L+ S +N K++
Sbjct: 141 FNGLNQMIVVELGTNPLKS---------------------------SGIENGAFQGMKKL 173
Query: 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
NI I QG SL + L L NK+ + L + L LS N+++
Sbjct: 174 -SYIRIADTNITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425
+ +N ++ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 232 DNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 427
L+L +N +T F NLK + +L L NNK++ P L LE ++ N L E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 428 PE 429
PE
Sbjct: 116 PE 117
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 341 LSGLDLSCNKLIGP--IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
L LDLS N + LQ+ NL+ +QTLNLSHN G F +E LDL+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 399 LNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450
L+ P + L L+V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 32/223 (14%)
Query: 212 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 271
H ++ + LSKN++ +++ G F SL TL+L NRL + + LS+L L L
Sbjct: 57 HLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 272 HNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSC--FDNTTLHEKKQIREKFEFTTKNI 329
+N +E +P +PS D L + I E N+
Sbjct: 116 NNPIES-IP----------------SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 330 AYIYQG----------KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
Y+ G L L L+LS N+L P LT ++ L L H +
Sbjct: 159 RYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQL-VELKTLEVFSVAYN 421
+ F +LK +E L+LS+N L +PH L L LE + +N
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 37 IPVEIADVLPSLYAFNNSMNALDGSIPS-SFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV 95
+P + + L L N ++ SIPS +F + L+ LDL I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL 150
NLR+L L NL+ L L+ L+L G+R P S +SL L+L
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 212 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 271
H ++ + LSKN++ +++ G F SL TL+L NRL + + LS+L L L
Sbjct: 57 HLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 272 HNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSC--FDNTTLHEKKQIREKFEFTTKNI 329
+N +E +P +PS D L + I E N+
Sbjct: 116 NNPIES-IP----------------SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 330 AYIYQG----------KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
Y+ G L L L+LS N+L P LT ++ L L H +
Sbjct: 159 RYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQL 407
+ F +LK +E L+LS+N L +PH L
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 37 IPVEIADVLPSLYAFNNSMNALDGSIPS-SFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV 95
+P + + L L N ++ SIPS +F + L+ LDL I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL 150
NLR+L L NL+ L L+ L+L G+R P S +SL L+L
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 54/183 (29%)
Query: 96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL 155
N+R+LAL N L H S LTNL +L L G++ QSL G++
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQL-----QSLP-----NGVF------ 105
Query: 156 SGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPS-CFHPL 214
LT L+ +++ N L+ SLP F L
Sbjct: 106 --------DKLTNLKELVLVENQLQ-------------------------SLPDGVFDKL 132
Query: 215 S-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 273
+ + ++L+ N L L +G F ++L LDLSYN+L D L+QL L L N
Sbjct: 133 TNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 274 NLE 276
L+
Sbjct: 192 QLK 194
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPH----QLVELKTLEVF 416
LT + LNL+HN L F L + LDLS N+L +P +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLY 189
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 40 EIADVLP-----SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGC 94
+I D+ P SL+ F +N + P N L L + NN +T P
Sbjct: 188 QIEDISPLASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP---LANL 242
Query: 95 VNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNS 154
L +L + N + ++ LT LK L + GS + +I L+ S L L+LNNN
Sbjct: 243 SQLTWLEIGTNQISDINAVKD--LTKLKXLNV-GSNQISDI-SVLNNLSQLNSLFLNNNQ 298
Query: 155 LSGKIPRWLGNLTRLQCIIMPNNHLEGPIPV 185
L + +G LT L + + NH+ P+
Sbjct: 299 LGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
L + +IS N F+ D L LY NS+ L P+ N+ L+ LDLS+N L
Sbjct: 234 LQIFNISANIFK-------YDFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRL 282
Query: 83 TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
T +P L C L++ +N + + NL NL++L +EG+ + + L++
Sbjct: 283 TS-LPAELG-SCFQLKYFYFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTE- 338
Query: 143 SSLEGL--YLNNNSLSGKIP 160
S+ GL YL +N +P
Sbjct: 339 KSVTGLIFYLRDNRPEIPLP 358
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSN---LKYVESLD 393
L+ L L+ N L +P +I NL+ ++ L+LSHN LT S+P+ + LKY D
Sbjct: 247 DFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG------KIPHQL 407
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 17/230 (7%)
Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXX 295
F +SL LDLS+N + S+++ GL QL HL H+NL+ +
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLK---QMSEFSVFLSLRNLIY 425
Query: 296 XXXXHGPIPSCFDN-----TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
H F+ ++L K F+ + I+ L L+ LDLS +
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ--ENFLPDIFTE--LRNLTFLDLSQCQ 481
Query: 351 LIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL 410
L P +L+ +Q LN+SHNN + L ++ LD S N + +L
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
Query: 411 KTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 460
+ S+A+ NL+ T + +F + + L + C +P+
Sbjct: 542 PS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG------KIPHQL 407
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
L+ LDLS +L P +L+ +Q LN+SHNN + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 401 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 460
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 556 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 362 LTRIQTLNLSHNNLTGS-IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420
L+ ++ L ++ N+ + +P F+ L+ + LDLS +L P L +L+V ++++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 421 NNL 423
NN
Sbjct: 528 NNF 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG------KIPHQL 407
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276
F +SL LDLS+N + S+++ GL QL HL H+NL+
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLK 409
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG 401
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG 401
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG 401
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG 401
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 359 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNG 401
IG+L ++ LN++HN + +P FSNL +E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 25/155 (16%)
Query: 56 NALDGSIPSSFGNMKFLQFLDLSNN--------------------HLT----GEIPEHLA 91
NAL G ++F + L+ LDLS+N HL E+ L
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 92 VGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLN 151
G L++L L +NNLQ + +L NL L L G+R + SL+ L L+
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 152 NNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE 186
N ++ P +L RL + + N+L +P E
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAE 218
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 37/230 (16%)
Query: 52 NNSMNALDGS------IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNN 105
NN+ N++D S IPS+ + LDL +N L+ +P LR L L++N
Sbjct: 15 NNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDN 71
Query: 106 NLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 165
LQ L NL+ L + ++ + +L L L+ N L PR +
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 166 LTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPS-CFHPL-SIKQVHLSK 223
LT+L + + N L+ SLP F L S+K++ L
Sbjct: 132 LTKLTYLSLGYNELQ-------------------------SLPKGVFDKLTSLKELRLYN 166
Query: 224 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 273
N L ++ G F + L TL L N+L D L +L L L N
Sbjct: 167 NQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
L+ L L N+L P +LT++ L+L +N L F L ++ L L NN+L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 401 GKIPH----QLVELKTLEVFSVAYNNLSGEIPE 429
++P +L ELKTL++ NN +PE
Sbjct: 171 -RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 5/164 (3%)
Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178
+ K L L+ ++ ++ + + L LYLN+N L L L+ + + +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 179 LEG-PIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFF 236
L+ PI V F N + P F L+ + + L N L L +G F
Sbjct: 97 LQALPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 280
+SL L L N+L D L++L L L +N L+ VP
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKY--VESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420
T IQ L+L++N L + STFS LK+ + LDLS N L+ L +L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 421 NNLSGEIPE 429
NN+ P
Sbjct: 282 NNIQRLSPR 290
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 150/396 (37%), Gaps = 68/396 (17%)
Query: 47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLA--VGCVNLRFLALSN 104
SL + S N L P F + L L L+N L + E L + +++ L+L+N
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 105 NNLQGHMFS--RNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 162
N L S TNL L L + S S SL L L N++ PR
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 163 LGNLTRLQCIIMPNNHLEGPIPV---------EFCXXXXXXXXXXSDNNISGSLPSCFHP 213
L+ L+ + + + + + F DNNI + + F
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG 351
Query: 214 L-SIKQVHLSKNMLHGQ-LKRGTFFNC--SSLVTLDLSYNRLNGSISDWVDGLSQLSHLI 269
L S+K + LSK Q L TF + S L+TL+L+ N ++ + L QL L
Sbjct: 352 LVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILD 411
Query: 270 LGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNI 329
LG N +E ++ + E + +R FE
Sbjct: 412 LGLNEIEQKL-------------------------------SGQEWRGLRNIFE------ 434
Query: 330 AYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYV 389
IY LS L LS + LQ L R+ N+ + PS F L+ +
Sbjct: 435 --IY----LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS------PSPFRPLRNL 482
Query: 390 ESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLS 424
LDLSNN + I L+E L+ LE+ +NNL+
Sbjct: 483 TILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLA 517
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
+ I LNL+HN L P+ F+ + LD N ++ P L L+V ++ +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 423 LSGEIPEWTAQFAT 436
LS +I + T F T
Sbjct: 85 LS-QISDQTFVFCT 97
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 12 PFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKF 71
P LP ++ +LD+S+NN L +L++ S N L+ +F +
Sbjct: 34 PQSLPSYT----ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 72 LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNL---QGHMFSRNFNLTNLKWLQLEG 128
L++LDLS+NHL + E L L L L NN++ + F L L Q +
Sbjct: 90 LRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 129 SRFVGEIPQSLSKCSSLEGLYLNNNSLSG-------KIPRWLGN 165
SRF E+ + +K L L L++N L K+P W+ N
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
L +L LDLS N+L +PL L + L++S N LT L ++ L L
Sbjct: 76 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+L P L LE S+A NNL+ E+P
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 165
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 97 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
L+NN L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 156 LANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 210
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
L +L LDLS N+L +PL L + L++S N LT L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+L P L LE S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 423
L+NN L ++P L+ L+ L+ + N+L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
L +L LDLS N+L +PL L + L++S N LT L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+L P L LE S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 423
L+NN L ++P L+ L+ L+ + N+L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
L +L LDLS N+L +PL L + L++S N LT L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+L P L LE S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
L+NN L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
L +L LDLS N+L +PL L + L++S N LT L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+L P L LE S+A NNL+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 423
L+NN L ++P L+ L+ L+ + N+L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNN 80
LG L ++NN +P+ + D L L N L S+PS F + L+ L L+ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
L IP NL+ L+LS N LQ L L+ + L G++F
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF--------- 191
Query: 141 KCSSLEGLYLNN 152
CS E LYL+
Sbjct: 192 DCSRCETLYLSQ 203
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 362 LTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPH----QLVELKTLEVF 416
LT+++ L L+ N L SIP+ F L +++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 417 SVAYN 421
++
Sbjct: 188 GNQFD 192
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 26 LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALD--GSIPSSFGNMKFLQFLDLSNNHLT 83
L I +N R +P + L ++ N L+ G P +F +K L +L +S LT
Sbjct: 128 LRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT 185
Query: 84 GEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCS 143
G IP+ L L L L +N +Q + L L L ++ SLS
Sbjct: 186 G-IPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241
Query: 144 SLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFC 188
+L L+L+NN LS ++P L +L LQ + + N++ +FC
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 89/226 (39%), Gaps = 36/226 (15%)
Query: 200 DNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
+N IS F PL ++++++SKN L SSLV L + NR+
Sbjct: 87 NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGV 142
Query: 259 VDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQI 318
GL ++ + +G N LE G P FD L+ +
Sbjct: 143 FSGLRNMNCIEMGGNPLENS----------------------GFEPGAFDGLKLNYLRIS 180
Query: 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
K K++ L+ L L NK+ + +++ L L HN +
Sbjct: 181 EAKLTGIPKDLP--------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
+ S L + L L NNKL+ ++P L +LK L+V + NN++
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 25 MLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTG 84
+LD+ NN+ + + L LYA N + +F ++ LQ L +S NHL
Sbjct: 58 LLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 85 EIPEHLAVGCVNLRFLALSNNNLQGHMFS--RNFNLTNLKWLQLEGSRF 131
EIP +L V LR + +FS RN N + LE S F
Sbjct: 116 EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 32/181 (17%)
Query: 96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL 155
N+R+LAL N L H S LTNL +L L G++ K ++L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 156 SGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPS-CFHPL 214
LT L + + +N L+ SLP F L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQ-------------------------SLPKGVFDKL 156
Query: 215 S-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGH 272
+ + ++ L N L L G F + L L L+ N+L S+ D V D L+ L+H+ L +
Sbjct: 157 TNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLN 214
Query: 273 N 273
N
Sbjct: 215 N 215
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 61 SIPSS-FGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLT 119
S+P+ F + L+ L L N L +P+ + NL +L L +N LQ LT
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLT 157
Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN 177
NL L L+ ++ K + L+ L LN+N L LT L I + NN
Sbjct: 158 NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 331 YIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVE 390
+ ++G S + DLS +K+ + + T ++ L L+ N + + F L ++
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 391 SLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSG 425
L+LS N L G I ++ E L LEV ++YN++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 45 LPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS 103
L L N S N L GSI S F N+ L+ LDLS NH+ + + +G NL+ LAL
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 104 NNNLQ 108
N L+
Sbjct: 380 TNQLK 384
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 362 LTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420
LT + LNLS N L GSI S F NL +E LDLS N + + L L+ ++
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 421 NNLSGEIPE 429
N L +P+
Sbjct: 381 NQLKS-VPD 388
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 230 LKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEV 279
++ TF SSL+ L L YN+ + +GL+ L L L NL+G V
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 355 IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLE 414
+P ++ N + ++LS+N ++ +FSN+ + +L LS N+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 415 VFSVAYNNLSGEIPE 429
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
L+ +DLS N++ N+T++ TL LS+N L P TF LK + L L N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 401 GKIPHQLVELKTLEVFSVAYNNL 423
+L L ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 275
+ LS N + L +F N + L+TL LSYNRL DGL L L L N++
Sbjct: 59 IDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNN 80
LG L ++NN +P+ + D L L N L S+PS F + L+ L L+ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
L IP NL+ L+LS N LQ L L+ + L G++F
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF--------- 191
Query: 141 KCSSLEGLYLNN 152
CS E LYL+
Sbjct: 192 DCSRCEILYLSQ 203
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 362 LTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPH----QLVELKTLEVF 416
LT+++ L L+ N L SIP+ F L +++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 417 SVAYNNLSGEI 427
++ EI
Sbjct: 188 GNQFDCSRCEI 198
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
L +L LDLS N+L +PL L + L++S N LT L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
N+L P L LE S+A N+L+ E+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLT-ELP 164
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 423
L+NN L ++P L+ L+ L+ + N+L
Sbjct: 155 LANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 67 GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQL 126
G + L LDLS+N L +P L L L +S N L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 127 EGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179
+G+ P L+ LE L L NN L+ L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 26 LDISNNNFRGHIPVEIA-DVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTG 84
LD+S+N R P A L L A +N++ +DG N+ LQ L L NN L
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQ 522
Query: 85 EIPEHLAVGCVNLRFLALSNNNL 107
V C L L L N+L
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 26 LDISNNNFRGHIPVEIA-DVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTG 84
LD+S+N R P A L L A +N++ +DG N+ LQ L L NN L
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQ 522
Query: 85 EIPEHLAVGCVNLRFLALSNNNL 107
V C L L L N+L
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 30/282 (10%)
Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
NLTNL L+L S + +I +LS +SL+ L ++N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLEL-SSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 177 NHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 234
N + I V ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGIL-TNLDELSLNGNQLKDIGT 234
Query: 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXX 294
+ ++L LDL+ N+++ + GL++L+ L LG N + P+
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 295 XXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP 354
PI + + T L F NI+ I L+ L L S NK+
Sbjct: 293 NQLEDISPISNLKNLTYL--------TLYF--NNISDISPVSSLTKLQRLFFSNNKVSDV 342
Query: 355 IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
L NLT I L+ HN ++ P +NL + L L++
Sbjct: 343 SSL--ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 380
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
K L+ L+ L+LS N I I G LT +Q L+ S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 365 IQTLNLSHNNLTGSIPSTFSNL-KYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
I LNLS N LTGS+ F L V+ LDL NN++ IP + L+ L+ +VA N L
Sbjct: 430 ILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQL 485
Query: 424 SGEIPE 429
+P+
Sbjct: 486 KS-VPD 490
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 68 NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLE 127
NM L+ LD+S N L + ++ L LS+N L G +F R +K L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-RCLP-PKVKVLDLH 458
Query: 128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIP 184
+R + IP+ ++ +L+ L + +N L LT LQ I + +N + P
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 200 DNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
DN I+ P F L ++K+++L N L G L G F + + L LDL N+L S
Sbjct: 49 DNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 259 VDGLSQLSHLILGHNNLEGEVP 280
D L L L + N L E+P
Sbjct: 108 FDRLVHLKELFMCCNKLT-ELP 128
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%)
Query: 360 GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 419
G L + L L N LTG P+ F +++ L L NK+ + L L+ ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 420 YNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
N +S +P + + N F C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272
PL ++ L+ N L G F LV L+L N+L G + +G S + L LG
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 273 NNLE 276
N ++
Sbjct: 88 NKIK 91
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF--SVA 419
L R+Q LN+SHNNL S ++ L + +LD S N++ L+ F S+A
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 543
Query: 420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASI 467
+ NL+ + F + E FL + C +P M+ + +
Sbjct: 544 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLV 591
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF--SVA 419
L R+Q LN+SHNNL S ++ L + +LD S N++ L+ F S+A
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 548
Query: 420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASI 467
+ NL+ + F + E FL + C +P M+ + +
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLV 596
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 423 LSGEIPEWTAQFAT 436
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 320 EKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGP-----IPLQIGNLTRIQTLNLSH 372
+K E ++ I G + L GL L+ N +GP + L++ N T I+ L+LS+
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLN-NVQLGPSLTEKLCLELAN-TSIRNLSLSN 231
Query: 373 NNLTGSIPSTFSNLKY--VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
+ L+ + +TF LK+ + LDLS N LN L LE F + YNN+
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276
++L LDLSYN LN +D L QL + L +NN++
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
S L+ LD+ N + P L ++ LNL HN L+ TF+ + L L +N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 399 LNGKIPHQLVELKTLEVFSVAYNNLSG 425
+ + V+ K L +++N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 423 LSGEIPEWTAQFAT 436
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 320 EKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGP-----IPLQIGNLTRIQTLNLSH 372
+K E ++ I G + L GL L+ N +GP + L++ N T I+ L+LS+
Sbjct: 184 KKLELSSNQIKEFSPGCFHAIGRLFGLFLN-NVQLGPSLTEKLCLELAN-TSIRNLSLSN 241
Query: 373 NNLTGSIPSTFSNLKY--VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
+ L+ + +TF LK+ + LDLS N LN L LE F + YNN+
Sbjct: 242 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276
++L LDLSYN LN +D L QL + L +NN++
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 295
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
S L+ LD+ N + P L ++ LNL HN L+ TF+ + L L +N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 399 LNGKIPHQLVELKTLEVFSVAYNNLSG 425
+ + V+ K L +++N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 423 LSGEIPEWTAQFAT 436
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 320 EKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGP-----IPLQIGNLTRIQTLNLSH 372
+K E ++ I G + L GL L+ N +GP + L++ N T I+ L+LS+
Sbjct: 179 KKLELSSNQIKEFSPGCFHAIGRLFGLFLN-NVQLGPSLTEKLCLELAN-TSIRNLSLSN 236
Query: 373 NNLTGSIPSTFSNLKY--VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
+ L+ + +TF LK+ + LDLS N LN L LE F + YNN+
Sbjct: 237 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276
++L LDLSYN LN +D L QL + L +NN++
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
S L+ LD+ N + P L ++ LNL HN L+ TF+ + L L +N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 399 LNGKIPHQLVELKTLEVFSVAYNNLSG 425
+ + V+ K L +++N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 11 GPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADV------------LPSLYAFNNSMNAL 58
R+ I SH R+ LDIS F+ + +E D+ +L + S NA
Sbjct: 45 SKLRILIISHNRIQYLDISV--FKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF 102
Query: 59 DG-SIPSSFGNMKFLQFLDLSNNHL 82
D I FGNM L+FL LS HL
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHL 127
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 344 LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT--GSIPSTFSNLKYVESLDLSNNKLNG 401
LD S N L + G+LT ++TL L N L I + +K ++ LD+S N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN---- 384
Query: 402 KIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS 441
SV+Y+ G+ WT + N SS
Sbjct: 385 ---------------SVSYDEKKGDC-SWTKSLLSLNMSS 408
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418
I +L++++ L +SHN + S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 419 AYNNL 423
A++ L
Sbjct: 101 AFDAL 105
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 215 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNN 274
S+ Q++L N L L G F +SL L+LS N+L + D L+QL L L N
Sbjct: 53 SLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 275 LE 276
L+
Sbjct: 112 LQ 113
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 425 GEIPE 429
E+P+
Sbjct: 93 TELPK 97
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 425 GEIPE 429
E+P+
Sbjct: 93 TELPK 97
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 361 NLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL--KTLEVFS 417
NL + L+LS N + + +F L ++S+D S+N++ H+L L KTL FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 418 VAYNNLSGEIP-EW 430
+A N+L + +W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 421
L+ +Q L L+HN L P FS+L + L L++N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 422 NLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 453
L P+ F + + N F+C L
Sbjct: 537 QLLAPNPD---VFVSLSVLDITHNKFICECEL 565
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
+ ++ L+LSH + F LK ++ L+L+ NK+N L L+V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 423 LSGEI 427
L GE+
Sbjct: 325 LLGEL 329
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 119/286 (41%), Gaps = 38/286 (13%)
Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
NLTNL L+L S + +I +LS +SL+ L ++N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLEL-SSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 177 NHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 234
N + I V ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGIL-TNLDELSLNGNQLKDIGT 234
Query: 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXX 294
+ ++L LDL+ N+++ + GL++L+ L LG N + P+
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 295 XXXXXHGPIPSCFDNTTL----HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
PI + + T L + I T + Y KV + S
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-------- 344
Query: 351 LIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
+ NLT I L+ HN ++ P +NL + L L++
Sbjct: 345 --------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 380
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
K L+ L+ L+LS N I I G LT +Q L+ S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
K L+ L+ L+LS N I I G LT +Q LN S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 119/286 (41%), Gaps = 38/286 (13%)
Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
NLTNL L+L S + +I +LS +SL+ L ++N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLEL-SSNTISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 177 NHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 234
N + I V ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGIL-TNLDELSLNGNQLKDIGT 234
Query: 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXX 294
+ ++L LDL+ N+++ + GL++L+ L LG N + P+
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 295 XXXXXHGPIPSCFDNTTL----HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
PI + + T L + I T + Y KV + S
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-------- 344
Query: 351 LIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
+ NLT I L+ HN ++ P +NL + L L++
Sbjct: 345 --------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 380
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 359 IGNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417
+GNLT + H N S+P F L ++ L L N++ PH +L L
Sbjct: 152 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
+ NNLS E A N ++C
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 359 IGNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417
+GNLT + H N S+P F L ++ L L N++ PH +L L
Sbjct: 151 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
+ NNLS E A N ++C
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 27/203 (13%)
Query: 200 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
D +IS ++ +S++ ++L K+ + TF S L LDL+ L+ S V
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGLV 298
Query: 260 DGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQIR 319
GLS L L+L N E I S F + T K
Sbjct: 299 -GLSTLKKLVLSANKFENLCQIS---------------------ASNFPSLTHLSIKGNT 336
Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
++ E T + + + L L S D+ + LQ+ NL+ +Q+LNLS+N
Sbjct: 337 KRLELGTGCLENLENLRELDL-SHDDIETSDCCN---LQLRNLSHLQSLNLSYNEPLSLK 392
Query: 380 PSTFSNLKYVESLDLSNNKLNGK 402
F +E LDL+ +L K
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVK 415
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 35 GHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGC 94
+P I LY ++N + L+ P F + L LDL NN LT +P +
Sbjct: 30 ASVPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 85
Query: 95 VNLRFLALSNNNLQ 108
L L+L++N L+
Sbjct: 86 TQLTQLSLNDNQLK 99
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272
P + + ++L N + +L+ G F + L LDL N+L + D L+QL+ L L
Sbjct: 37 PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 95
Query: 273 NNLE 276
N L+
Sbjct: 96 NQLK 99
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 342 SGLDLSCN-KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399
SG + C+ K + +P I T Q L L N +T P F L + LDL NN+L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 327 KNIAYIYQGKV--LSLLSGLDLS-CNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTF 383
K ++YI +G LS L L+L+ CN + IP + L ++ L+LS N+L+ P +F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 384 SNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
L +++ L + +++ + L++L ++A+NNL+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNL-KYVESLDLSNNKL 399
L L+ N+L G +P G+ ++ +LNL++N +T IP+ F + VE+L ++NKL
Sbjct: 332 LGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
Query: 400 NGKIPHQLVELKTLEVFSV---AYNNL 423
IP+ + + K++ V S +YN +
Sbjct: 390 K-YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
L+NN+L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 35 GHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGC 94
+P I LY ++N + L+ P F + L LDL NN LT +P +
Sbjct: 22 ASVPTGIPTTTQVLYLYDNRITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 95 VNLRFLALSNNNLQ 108
L L+L++N L+
Sbjct: 78 TQLTQLSLNDNQLK 91
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 342 SGLDLSCN-KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399
SG + C+ K + +P I T Q L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 35 GHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGC 94
+P I LY ++N + L+ P F + L LDL NN LT +P +
Sbjct: 22 ASVPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 95 VNLRFLALSNNNLQ 108
L L+L++N L+
Sbjct: 78 TQLTQLSLNDNQLK 91
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272
P + + ++L N + +L+ G F + L LDL N+L + D L+QL+ L L
Sbjct: 29 PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 273 NNLE 276
N L+
Sbjct: 88 NQLK 91
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 342 SGLDLSCN-KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399
SG + C+ K + +P I T Q L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 423
L+NN+L ++P L+ L+ L+ + N+L
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
L+NN+L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 335 GKVLSLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
G+ L L+ LD+S N+L +PL + L +Q L L N L P + +E L
Sbjct: 96 GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 394 LSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 423
L+NN+L ++P L+ L+ L+ + N+L
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272
P + + +HL N + +L+ G F + + L L+L+ N+L D L++L+HL L
Sbjct: 39 PTTTQVLHLYINQI-TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHI 97
Query: 273 NNLE 276
N L+
Sbjct: 98 NQLK 101
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
L+ LDLS +L P +L+ +Q LN+SHNN + L ++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 401 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA 460
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 237 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 362 LTRIQTLNLSHNNLTGS-IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420
L+ ++ L ++ N+ + +P F+ L+ + LDLS +L P L +L+V ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 421 NN 422
NN
Sbjct: 209 NN 210
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 148/376 (39%), Gaps = 63/376 (16%)
Query: 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
L ++ SNN P++ L + NN + + + N+ L L L NN +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-----TPLANLTNLTGLTLFNNQI 119
Query: 83 TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
T P NL L LS+N + S LT+L+ L G++ P L+
Sbjct: 120 TDIDPLK---NLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP--LANL 171
Query: 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNN 202
++LE L +++N +S L LT L+ +I NN +
Sbjct: 172 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI----------------------- 206
Query: 203 ISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GTFFNCSSLVTLDLSYNRLNGSISDWVD 260
S PL I +L + L+G QLK GT + ++L LDL+ N+++ +
Sbjct: 207 ------SDITPLGIL-TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS 257
Query: 261 GLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQIRE 320
GL++L+ L LG N + P+ PI + + T L
Sbjct: 258 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-------- 309
Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
F NI+ I L+ L L S NK+ L NLT I L+ HN ++ P
Sbjct: 310 TLYF--NNISDISPVSSLTKLQRLFFSNNKVSDVSSL--ANLTNINWLSAGHNQISDLTP 365
Query: 381 STFSNLKYVESLDLSN 396
+NL + L L++
Sbjct: 366 --LANLTRITQLGLND 379
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 347 SCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ 406
S N + GP+ +++ L L HNNLT + + N + +DLS N+L + H
Sbjct: 216 SINVVRGPVNVELT------ILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 407 LVELKTLEVFSVAYNNLSG 425
V+++ LE ++ N L
Sbjct: 268 FVKMQRLERLYISNNRLVA 286
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 7/179 (3%)
Query: 14 RLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQ 73
++P H + L ++NN F I LP L N S N + +F +
Sbjct: 25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84
Query: 74 FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG 133
+ L++N L + + G +L+ L L +N + L++++ L L ++
Sbjct: 85 EILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLQCIIMPNNHLEGP-----IPVE 186
P + SL L L N + WLG R + I+ N + P IP++
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQ 202
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 230 LKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEV 279
++ TF SSL+ L L YN+ + +GL+ L L L NL+G V
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 200 DNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
+N I+ P F H ++++Q++ + N L + G F + L LDL+ N L
Sbjct: 42 NNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100
Query: 259 VDGLSQLSHLILGHNNLEGEV 279
D L L+H+ L +N + E
Sbjct: 101 FDNLKSLTHIYLYNNPWDCEC 121
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
L L+L+ N + P NL ++TL L N L F+ L + LD+S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 401 GKIPHQLVELKTLEVFSVAYNNL 423
+ + +L L+ V N+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 26 LDISNNN--FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLT 83
LD+S N + GH + L L ++ +N ++G S G+ L+ LDLS+NHL+
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDNHLS 113
Query: 84 GEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEI 135
+ +L++L L N Q + F NLTNL+ L++ EI
Sbjct: 114 S-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 165
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 347 SCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ 406
S N + GP+ +++ L L HNNLT + + N + +DLS N+L + H
Sbjct: 222 SINVVRGPVNVELT------ILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273
Query: 407 LVELKTLEVFSVAYNNL 423
V+++ LE ++ N L
Sbjct: 274 FVKMQRLERLYISNNRL 290
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 26 LDISNNN--FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLT 83
LD+S N + GH + L L ++ +N ++G S G+ L+ LDLS+NHL+
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDNHLS 87
Query: 84 GEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEI 135
+ +L++L L N Q + F NLTNL+ L++ EI
Sbjct: 88 S-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,266,414
Number of Sequences: 62578
Number of extensions: 604465
Number of successful extensions: 1914
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 530
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)