Query 045598
Match_columns 536
No_of_seqs 409 out of 4417
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-50 2.3E-55 449.8 34.0 440 2-452 123-588 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-48 3.7E-53 432.2 32.9 440 2-452 145-611 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.9E-45 8.4E-50 346.3 8.9 420 22-474 53-495 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.1E-42 4.6E-47 327.8 -0.1 368 22-422 79-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.8E-37 1E-41 279.3 -12.8 415 18-449 42-542 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.7E-34 3.8E-39 276.3 -5.2 366 21-449 7-376 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 1.2E-33 2.5E-38 270.7 -3.6 361 2-424 12-375 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 1E-34 2.2E-39 264.2 -12.1 380 2-424 96-541 (565)
9 KOG0618 Serine/threonine phosp 100.0 5.2E-32 1.1E-36 270.6 -6.8 400 2-448 50-489 (1081)
10 KOG0618 Serine/threonine phosp 99.9 3.1E-30 6.8E-35 258.0 -4.4 422 1-447 2-464 (1081)
11 KOG4237 Extracellular matrix p 99.9 1.7E-29 3.7E-34 229.8 -7.4 410 24-445 49-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 3.5E-24 7.6E-29 238.4 26.8 341 15-398 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.7E-28 1.2E-32 220.0 -3.0 331 74-471 50-397 (498)
14 PLN03210 Resistant to P. syrin 99.9 1.8E-23 3.8E-28 232.8 27.5 342 37-422 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.4E-20 3E-25 195.0 17.8 263 71-430 202-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.4E-20 5.2E-25 193.2 17.2 263 48-407 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.3E-18 4.9E-23 179.8 11.5 118 71-204 179-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4E-18 8.6E-23 178.0 12.9 161 22-205 179-339 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-19 2.5E-24 176.3 -2.9 58 74-131 2-63 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-18 3E-23 168.8 0.3 277 1-298 2-318 (319)
21 KOG0617 Ras suppressor protein 99.6 2.6E-18 5.6E-23 139.5 -4.9 177 239-449 33-213 (264)
22 KOG0617 Ras suppressor protein 99.6 8.1E-18 1.8E-22 136.6 -5.5 157 46-208 33-190 (264)
23 PLN03150 hypothetical protein; 99.5 4.1E-14 8.8E-19 147.6 10.5 118 340-457 419-538 (623)
24 KOG1259 Nischarin, modulator o 99.2 2.6E-12 5.6E-17 114.2 0.8 133 261-427 282-415 (490)
25 KOG1909 Ran GTPase-activating 99.2 1E-12 2.2E-17 119.5 -3.3 176 116-302 27-228 (382)
26 COG4886 Leucine-rich repeat (L 99.2 4.3E-11 9.4E-16 119.6 7.2 194 25-228 97-291 (394)
27 PF14580 LRR_9: Leucine-rich r 99.1 3.7E-11 7.9E-16 102.7 4.7 111 17-132 15-126 (175)
28 KOG3207 Beta-tubulin folding c 99.1 5.6E-12 1.2E-16 117.9 -0.4 208 45-253 120-340 (505)
29 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4.1E-17 124.8 -3.9 171 217-425 78-248 (722)
30 KOG1259 Nischarin, modulator o 99.1 1.2E-11 2.7E-16 110.0 1.3 132 236-401 281-413 (490)
31 COG4886 Leucine-rich repeat (L 99.1 7.9E-11 1.7E-15 117.7 7.2 199 171-429 97-295 (394)
32 PLN03150 hypothetical protein; 99.1 2.3E-10 5E-15 119.6 10.5 113 288-428 419-532 (623)
33 KOG0532 Leucine-rich repeat (L 99.1 1.5E-12 3.4E-17 125.4 -5.5 176 19-205 73-248 (722)
34 PF14580 LRR_9: Leucine-rich r 99.1 9.1E-11 2E-15 100.3 4.5 109 337-449 17-127 (175)
35 KOG1909 Ran GTPase-activating 99.0 2.7E-11 5.8E-16 110.4 -0.2 252 17-300 26-311 (382)
36 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.6E-15 123.2 5.6 42 337-378 768-809 (889)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3.1E-10 6.8E-15 121.2 6.6 180 20-205 544-731 (889)
38 KOG3207 Beta-tubulin folding c 99.0 3.9E-11 8.5E-16 112.3 -0.2 113 189-301 170-285 (505)
39 PF13855 LRR_8: Leucine rich r 99.0 2.4E-10 5.2E-15 80.2 2.8 60 364-423 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 99.0 4.4E-10 9.5E-15 78.9 2.9 61 339-399 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.9 2.4E-10 5.2E-15 114.3 -0.8 245 119-428 72-322 (414)
42 KOG0531 Protein phosphatase 1, 98.8 3.1E-10 6.8E-15 113.5 -1.4 177 235-449 136-319 (414)
43 KOG1859 Leucine-rich repeat pr 98.6 1E-09 2.2E-14 109.2 -5.2 108 338-450 186-294 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.5 2.1E-09 4.6E-14 95.9 -6.3 87 22-108 186-273 (419)
45 KOG2982 Uncharacterized conser 98.5 5.3E-08 1.2E-12 87.1 1.8 197 92-295 68-287 (418)
46 KOG1859 Leucine-rich repeat pr 98.4 8.5E-09 1.8E-13 102.8 -6.5 160 14-180 102-292 (1096)
47 KOG2982 Uncharacterized conser 98.3 7.7E-08 1.7E-12 86.1 -0.7 202 69-271 70-287 (418)
48 KOG2120 SCF ubiquitin ligase, 98.3 9.8E-09 2.1E-13 91.8 -7.1 179 215-421 186-373 (419)
49 KOG4579 Leucine-rich repeat (L 98.2 7.7E-08 1.7E-12 76.1 -2.8 60 339-400 77-136 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.4E-07 3.1E-12 83.3 -2.0 175 117-302 28-229 (388)
51 KOG4579 Leucine-rich repeat (L 98.1 9.1E-08 2E-12 75.7 -4.1 111 339-453 53-164 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.1 6E-07 1.3E-11 79.5 0.3 164 138-301 87-286 (388)
53 KOG3665 ZYG-1-like serine/thre 98.0 3E-06 6.6E-11 88.7 2.6 87 92-180 170-263 (699)
54 KOG1644 U2-associated snRNP A' 98.0 1.4E-05 3E-10 68.0 5.8 81 47-130 43-124 (233)
55 PF12799 LRR_4: Leucine Rich r 98.0 6.6E-06 1.4E-10 52.6 2.8 35 365-400 3-37 (44)
56 PF13306 LRR_5: Leucine rich r 98.0 2.6E-05 5.6E-10 64.3 7.2 123 64-193 6-128 (129)
57 PF13306 LRR_5: Leucine rich r 97.9 2.3E-05 4.9E-10 64.6 6.6 125 38-169 4-128 (129)
58 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.3E-10 67.8 5.5 86 115-200 60-149 (233)
59 PF12799 LRR_4: Leucine Rich r 97.9 8.8E-06 1.9E-10 52.1 3.0 38 387-425 1-38 (44)
60 PRK15386 type III secretion pr 97.7 7.1E-05 1.5E-09 72.4 7.0 32 363-397 156-187 (426)
61 PRK15386 type III secretion pr 97.7 0.00016 3.5E-09 70.0 8.5 137 235-422 48-188 (426)
62 KOG3665 ZYG-1-like serine/thre 97.6 1.8E-05 4E-10 83.0 1.8 107 70-178 122-231 (699)
63 KOG4341 F-box protein containi 97.6 2.5E-06 5.5E-11 80.3 -5.2 276 21-298 138-437 (483)
64 KOG4341 F-box protein containi 97.1 2.5E-05 5.3E-10 73.8 -4.8 292 2-295 143-460 (483)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00066 1.4E-08 60.6 1.4 105 45-152 42-152 (260)
66 KOG2739 Leucine-rich acidic nu 96.6 0.0014 3E-08 58.6 2.5 84 340-425 44-130 (260)
67 KOG2123 Uncharacterized conser 96.4 0.00019 4.2E-09 64.3 -4.0 98 47-149 20-123 (388)
68 KOG1947 Leucine rich repeat pr 96.3 0.00062 1.3E-08 70.1 -1.3 174 19-202 186-373 (482)
69 KOG2123 Uncharacterized conser 96.2 0.00024 5.2E-09 63.7 -4.5 83 339-425 19-102 (388)
70 TIGR00864 PCC polycystin catio 95.9 0.0035 7.6E-08 73.4 2.0 57 418-474 2-77 (2740)
71 KOG1947 Leucine rich repeat pr 95.7 0.0018 3.9E-08 66.7 -1.6 244 36-299 178-439 (482)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.6E-07 31.1 0.7 10 367-376 4-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.6E-07 31.1 0.7 20 388-408 1-20 (22)
74 KOG3864 Uncharacterized conser 94.7 0.0037 8.1E-08 53.6 -2.3 81 340-420 102-185 (221)
75 PF13504 LRR_7: Leucine rich r 93.4 0.057 1.2E-06 26.4 1.4 13 71-83 2-14 (17)
76 smart00369 LRR_TYP Leucine-ric 92.3 0.14 3E-06 28.2 2.3 22 69-91 1-22 (26)
77 smart00370 LRR Leucine-rich re 92.3 0.14 3E-06 28.2 2.3 22 69-91 1-22 (26)
78 smart00369 LRR_TYP Leucine-ric 91.7 0.16 3.5E-06 27.9 2.1 15 387-401 2-16 (26)
79 smart00370 LRR Leucine-rich re 91.7 0.16 3.5E-06 27.9 2.1 15 387-401 2-16 (26)
80 KOG4308 LRR-containing protein 91.1 0.0021 4.5E-08 64.8 -10.5 182 23-205 89-304 (478)
81 KOG0473 Leucine-rich repeat pr 90.8 0.0062 1.3E-07 53.4 -6.3 83 339-424 42-124 (326)
82 KOG4308 LRR-containing protein 89.5 0.0039 8.4E-08 62.9 -10.2 86 339-424 204-303 (478)
83 KOG3864 Uncharacterized conser 89.3 0.036 7.7E-07 47.8 -2.9 33 48-80 103-135 (221)
84 PF13516 LRR_6: Leucine Rich r 89.1 0.1 2.2E-06 28.1 -0.2 15 387-401 2-16 (24)
85 KOG0473 Leucine-rich repeat pr 86.4 0.018 3.9E-07 50.6 -6.5 60 94-155 64-123 (326)
86 smart00365 LRR_SD22 Leucine-ri 79.1 1.7 3.7E-05 24.0 1.7 14 387-400 2-15 (26)
87 smart00368 LRR_RI Leucine rich 74.7 1.9 4.1E-05 24.2 1.2 21 21-41 2-22 (28)
88 smart00082 LRRCT Leucine rich 71.3 0.93 2E-05 29.8 -0.7 10 445-454 1-10 (51)
89 smart00364 LRR_BAC Leucine-ric 68.3 3.4 7.3E-05 22.7 1.2 17 71-88 3-19 (26)
90 KOG3763 mRNA export factor TAP 68.1 2.9 6.2E-05 42.2 1.6 36 362-397 217-254 (585)
91 KOG4242 Predicted myosin-I-bin 66.2 22 0.00047 35.5 7.0 18 192-209 215-232 (553)
92 KOG4242 Predicted myosin-I-bin 64.8 33 0.0007 34.3 7.8 18 71-88 215-232 (553)
93 PF15102 TMEM154: TMEM154 prot 62.0 3.2 6.8E-05 34.0 0.5 19 491-509 70-88 (146)
94 KOG3763 mRNA export factor TAP 55.5 6.2 0.00013 39.9 1.4 62 338-401 217-284 (585)
95 PF02009 Rifin_STEVOR: Rifin/s 55.3 14 0.00029 34.9 3.5 24 484-507 260-283 (299)
96 PF02158 Neuregulin: Neureguli 54.2 4.9 0.00011 38.4 0.4 36 476-511 5-41 (404)
97 PHA03099 epidermal growth fact 54.2 11 0.00025 29.8 2.3 29 484-512 104-132 (139)
98 PF15050 SCIMP: SCIMP protein 52.0 16 0.00035 28.5 2.8 29 481-509 8-36 (133)
99 PF01102 Glycophorin_A: Glycop 49.8 14 0.0003 29.5 2.3 11 499-509 84-94 (122)
100 PF08374 Protocadherin: Protoc 49.6 7 0.00015 34.2 0.6 30 479-508 37-66 (221)
101 TIGR00864 PCC polycystin catio 45.3 15 0.00031 45.1 2.5 33 369-401 1-33 (2740)
102 COG4323 Predicted membrane pro 43.5 60 0.0013 23.7 4.4 23 514-536 61-83 (105)
103 smart00367 LRR_CC Leucine-rich 41.1 19 0.00041 19.5 1.3 11 387-397 2-12 (26)
104 PF07204 Orthoreo_P10: Orthore 35.5 26 0.00056 26.1 1.6 28 480-507 42-69 (98)
105 PRK01844 hypothetical protein; 33.2 64 0.0014 22.9 3.2 11 500-510 22-32 (72)
106 PF08114 PMP1_2: ATPase proteo 32.2 50 0.0011 20.3 2.1 13 489-501 18-30 (43)
107 PTZ00046 rifin; Provisional 31.0 28 0.00061 33.5 1.6 10 499-508 333-342 (358)
108 TIGR01477 RIFIN variant surfac 30.7 30 0.00064 33.3 1.6 11 499-509 328-338 (353)
109 PTZ00370 STEVOR; Provisional 30.4 38 0.00083 31.3 2.2 9 494-502 268-276 (296)
110 PF13120 DUF3974: Domain of un 28.9 28 0.00062 25.7 0.9 24 483-506 9-32 (126)
111 TIGR01478 STEVOR variant surfa 28.7 38 0.00081 31.3 1.9 10 493-502 271-280 (295)
112 PRK00523 hypothetical protein; 26.8 98 0.0021 22.0 3.2 10 501-510 24-33 (72)
113 KOG3251 Golgi SNAP receptor co 22.1 59 0.0013 28.7 1.8 9 498-506 204-212 (213)
114 PF02009 Rifin_STEVOR: Rifin/s 21.5 1.1E+02 0.0023 29.1 3.5 30 481-510 254-283 (299)
115 PHA02650 hypothetical protein; 21.3 92 0.002 22.4 2.3 18 486-503 54-71 (81)
116 PF04478 Mid2: Mid2 like cell 21.1 21 0.00045 29.6 -1.1 6 483-488 52-57 (154)
117 PF05725 FNIP: FNIP Repeat; I 20.3 1.5E+02 0.0032 18.6 3.0 10 338-347 11-20 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-50 Score=449.76 Aligned_cols=440 Identities=33% Similarity=0.496 Sum_probs=244.9
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 81 (536)
|||++|++.+.+|. ..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 123 L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 55555555554442 23455555555555555445544443 4555555555555555555555555555555555555
Q ss_pred CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCc
Q 045598 82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 161 (536)
Q Consensus 82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 161 (536)
+++.+|..+ +.+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|.
T Consensus 200 l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 200 LVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 544444443 3455555555555555544444455555555555555555444444455555555555555554444444
Q ss_pred ccCCCCCCCeEEccCCccccCCcccccCCCCCCEE------------------------EccCCcCcccCCCCC-CCCCc
Q 045598 162 WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL------------------------DISDNNISGSLPSCF-HPLSI 216 (536)
Q Consensus 162 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L------------------------~l~~n~~~~~~~~~~-~~~~L 216 (536)
.+.++++|++|++++|.+.+..|..+..+++|+.| ++++|.+.+..|..+ ...+|
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 44444555555555544444444444444444444 444444443333322 33445
Q ss_pred cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598 217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296 (536)
Q Consensus 217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 296 (536)
+.|++++|.+.+.++.. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus 359 ~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred cEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 55555555444433332 44444555555555555555555555566666666666666655565666666666666666
Q ss_pred CcCCCCCCccccccchhhhccccceeEEeeccce-eeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccC
Q 045598 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIA-YIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNL 375 (536)
Q Consensus 297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 375 (536)
|.+++..+..+........ +.+..+.+. ..+.....++|+.|++++|.+.+..|..+..+++|+.|+|++|++
T Consensus 438 N~l~~~~~~~~~~l~~L~~------L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 438 NNLQGRINSRKWDMPSLQM------LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511 (968)
T ss_pred CcccCccChhhccCCCCcE------EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence 6666555544333221111 111111111 111112235677777777777777777777777777777777777
Q ss_pred CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
.+..|+.+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++++.+++.+|++.+..|
T Consensus 512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 77777777777777777777777777777777777777777777777777777777677777777777777666544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-48 Score=432.22 Aligned_cols=440 Identities=33% Similarity=0.523 Sum_probs=333.3
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccC---------------
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSF--------------- 66 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------- 66 (536)
|||++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 455555555555555555555555555555555455544443 4455555555555444444444
Q ss_pred ---------CCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCc
Q 045598 67 ---------GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ 137 (536)
Q Consensus 67 ---------~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 137 (536)
+++++|++|++++|.+++.+|..+ +.+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 444555555555554444444433 4455555555555555555555555666666666666666666666
Q ss_pred CCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCc
Q 045598 138 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSI 216 (536)
Q Consensus 138 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L 216 (536)
.+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+..+ ...++
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 66677777777777777777777777788888888888888887888888999999999999999988777655 56789
Q ss_pred cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598 217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296 (536)
Q Consensus 217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 296 (536)
+.+++++|.+.+.++.. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++..+..+++|+.|++++
T Consensus 383 ~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 383 FKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 99999999998777765 88899999999999999999999999999999999999999998998889999999999999
Q ss_pred CcCCCCCCccccccchhhhccccceeEEeeccceeeec--cccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc
Q 045598 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ--GKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN 374 (536)
Q Consensus 297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 374 (536)
|.+.+..|..+.... ...+.+..+.+..... ...+++|++|++++|.+.+..|..+..+++|++|+|++|.
T Consensus 462 n~~~~~~p~~~~~~~-------L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 462 NKFFGGLPDSFGSKR-------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred ceeeeecCccccccc-------ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 999988887654311 1223333333321111 1347789999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 375 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
+++..|..+..+++|++|+|++|++++.+|..+..+++|+.|++++|++.+.+|.. ..+.++...++.|||..|+-+
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999975 467788888999999999743
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-45 Score=346.30 Aligned_cols=420 Identities=24% Similarity=0.282 Sum_probs=369.3
Q ss_pred CcCEEEccCCcCcccCCh-hHhhc-CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598 22 RLGMLDISNNNFRGHIPV-EIADV-LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~-~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 99 (536)
.-+.||++++.+. .+.. .+... .+.-+.|++++|.+...-+..|.++++|+.+++.+|.++ .||... +...+|+.
T Consensus 53 ~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEK 129 (873)
T ss_pred CceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeE
Confidence 3567888888776 3211 11111 235678999999999888888999999999999999999 999765 56678999
Q ss_pred EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179 (536)
Q Consensus 100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 179 (536)
|+|.+|.|+.+..+.+..++.|+.|||+.|.|+.+....|..-.++++|++++|.|+......|.++.+|.+|.++.|++
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99999999999999999999999999999999977767888888999999999999988888999999999999999999
Q ss_pred ccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchh
Q 045598 180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258 (536)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 258 (536)
+...+..|..+++|+.|++..|++.....-.| ++++|+.|.+..|.+. .+..++|..+.++++|+|+.|++...-..|
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccc
Confidence 98889999999999999999999986644444 7889999999999995 677788999999999999999999888899
Q ss_pred hhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccc
Q 045598 259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVL 338 (536)
Q Consensus 259 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (536)
+-+++.|+.|++++|.|....+..+.-+++|++|+|+.|+++...+..|.. +
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----------------------------L 340 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----------------------------L 340 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH----------------------------H
Confidence 999999999999999999888888999999999999999999888877754 7
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc---cccCCCCCCEEeCCCCcccccCchhhhCCCCCCE
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS---TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 415 (536)
..|++|+|++|.+......+|.++++|++|||++|.++..+.+ .|.++++|+.|+|.+|++..+...+|.+++.|+.
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 7899999999999987788999999999999999999866544 5888999999999999999888889999999999
Q ss_pred EEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-----------------CCCCCCCCCcccCCCCcCcc
Q 045598 416 FSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-----------------ICRSPATMSEASIGNERDDN 474 (536)
Q Consensus 416 L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~-----------------~C~~~~~~~~~~~~~~~~~~ 474 (536)
||+.+|.|...-|.+|.++ .++++-+.--.++|||++. .|.-|+.+.++.+...+...
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~ 495 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTAN 495 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhh
Confidence 9999999999999999888 8999999999999999885 69999999998776555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-42 Score=327.75 Aligned_cols=368 Identities=27% Similarity=0.298 Sum_probs=248.1
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
.-+.||+++|++. .+-..++..+++|+.+.+..|.++ .+|.......+|+.|+|.+|.|+ .+.......++.|+.||
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 3455777777766 444444445667777777777666 45554455556777777777666 45444445666777777
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 181 (536)
|+.|.++.+....|..-.++++|+|++|+|+......|..+.+|..|.++.|+++...+..|..+++|+.|++..|++.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 77777766666666666667777777777766666666666777777777777765555666667777777777776664
Q ss_pred CCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598 182 PIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260 (536)
Q Consensus 182 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 260 (536)
.....|.++++|+.|.+..|++.......| .+..+++|+++.|++. .+..+++-++++|+.|++++|.|....++.+.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhh
Confidence 445566677777777777777666555555 5566777777777664 44445566777777777777777766666666
Q ss_pred CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccc
Q 045598 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL 340 (536)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (536)
.+++|+.|+|++|.++...+.+|..+..|++|+|+.|++.......|.. +++
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------------------------lss 366 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG----------------------------LSS 366 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH----------------------------hhh
Confidence 6777777777777777666667777777777777777766544444432 567
Q ss_pred cceEEccCCcCcCCC---cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 341 LSGLDLSCNKLIGPI---PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 341 L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
|++|||++|.+...+ ...|.++++|+.|++.+|++..+...+|+++++|++|||.+|.|..+.+++|..+ .|+.|-
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 777777777665332 3457778888888888888887767778888888888888888887888888777 777776
Q ss_pred ccCCc
Q 045598 418 VAYNN 422 (536)
Q Consensus 418 l~~N~ 422 (536)
+..-+
T Consensus 446 ~nSss 450 (873)
T KOG4194|consen 446 MNSSS 450 (873)
T ss_pred hcccc
Confidence 65433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.8e-37 Score=279.26 Aligned_cols=415 Identities=27% Similarity=0.395 Sum_probs=290.7
Q ss_pred CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598 18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL 97 (536)
Q Consensus 18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 97 (536)
..-..++.+++++|.+. .+-.++-. +..+.+++++.|.+. ..|.+++.+..++.++.++|++. .+|+.+ +.+.++
T Consensus 42 W~qv~l~~lils~N~l~-~l~~dl~n-L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l 116 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE-VLREDLKN-LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISL 116 (565)
T ss_pred hhhcchhhhhhccCchh-hccHhhhc-ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhh
Confidence 34466788888888877 45555544 667888888888877 56777888888888888888888 888887 577888
Q ss_pred CEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCC
Q 045598 98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN 177 (536)
Q Consensus 98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 177 (536)
+.++.++|.+.. .++.++.+..|+.++..+|+++ ..|..+..+.++..+++.+|++....|..+ .++.|++++...|
T Consensus 117 ~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 117 VKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSN 193 (565)
T ss_pred hhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchh
Confidence 888888888873 4566777788888888888887 566777788888888888888874444444 4888888888888
Q ss_pred ccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch
Q 045598 178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD 257 (536)
Q Consensus 178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 257 (536)
-+. ..|..++++.+|+.|++..|++.. .|..-.+..|++++++.|.+. .++......++++..||+.+|+++ ..|+
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pd 269 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPD 269 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCch
Confidence 776 567778888888888888888874 445557778888888888873 566655668888888888888888 5677
Q ss_pred hhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhc---------------------
Q 045598 258 WVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK--------------------- 316 (536)
Q Consensus 258 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--------------------- 316 (536)
.+.-+.+|+.||+++|.++ ..|..++++ +|+.|-+.||++..+-.+.+...+.....
T Consensus 270 e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 7777888888888888888 577778888 88888888887642111111000000000
Q ss_pred ----------------------------------------cccceeEEeeccceeeecc---------------------
Q 045598 317 ----------------------------------------QIREKFEFTTKNIAYIYQG--------------------- 335 (536)
Q Consensus 317 ----------------------------------------~~~~~~~~~~~~~~~~~~~--------------------- 335 (536)
.......+..+.++.+|.+
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 0011122222222222211
Q ss_pred ----ccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCC
Q 045598 336 ----KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK 411 (536)
Q Consensus 336 ----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 411 (536)
..+++|.-|++++|.+. .+|..++++..|++|+++.|++. ..|..+-.+..++.+-.++|++....++.+.++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 12345555555555554 34555555555666666666555 4455555555555555555666656666688899
Q ss_pred CCCEEEccCCcCcccCCCCccccccCCccccccCcCCC
Q 045598 412 TLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449 (536)
Q Consensus 412 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c 449 (536)
+|..||+.+|.+. .+|..++.+++++++.+.||||.-
T Consensus 506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 9999999999999 677778999999999999999873
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-34 Score=276.29 Aligned_cols=366 Identities=25% Similarity=0.338 Sum_probs=200.8
Q ss_pred CCcCEEEccCCcCc-ccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598 21 KRLGMLDISNNNFR-GHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99 (536)
Q Consensus 21 ~~L~~L~ls~~~~~-~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 99 (536)
+-.+-+|+++|.++ +..|.+.-. |+.++.|.|....+. .+|..++.+.+|++|.+++|++. .+-..+ ..++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence 33444555555554 244444443 445555555554444 34555555555555555555544 333222 34444555
Q ss_pred EEcccCccCc-cCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCc
Q 045598 100 LALSNNNLQG-HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178 (536)
Q Consensus 100 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 178 (536)
+++..|++.. ..|..++.+..|+.|+|++| .+. ..|..+...+++-.|++++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShN------------------------qL~-EvP~~LE~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHN------------------------QLR-EVPTNLEYAKNSIVLNLSYNN 137 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchh------------------------hhh-hcchhhhhhcCcEEEEcccCc
Confidence 5555544432 22333444444444444444 444 344444444444445555555
Q ss_pred cccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCC-Cccch
Q 045598 179 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN-GSISD 257 (536)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~ 257 (536)
|..+....|.++..|-.|++|+|++...+|..-.+..|++|.+++|.+.- ..-..+..+++|+.|.+++.+-+ ..+|.
T Consensus 138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccchhhcCCC
Confidence 44443344444444445555555554444444444445555555544321 11111445556666666665432 24556
Q ss_pred hhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccc
Q 045598 258 WVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKV 337 (536)
Q Consensus 258 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (536)
.+.++.+|..++++.|.+. ..|..+..+++|+.|++++|.++..... .+.
T Consensus 217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~-~~~---------------------------- 266 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT-EGE---------------------------- 266 (1255)
T ss_pred chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc-HHH----------------------------
Confidence 6666777777777777766 6667777777777777777766633211 110
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-CCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 416 (536)
..+|++|++|.|+++ ..|.++..+++|+.|.+.+|+++ +-+|++++.+.+|+.+..++|.+. ..|+.++.+..|+.|
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 345666777777766 56666777777777777777665 225666677777777777777666 666777777777777
Q ss_pred EccCCcCcccCCCCccccccCCccccccCcCCC
Q 045598 417 SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449 (536)
Q Consensus 417 ~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c 449 (536)
.++.|++. .+|++..-++-+..+++..||-+.
T Consensus 345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 77777766 456666566666677777776554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-33 Score=270.66 Aligned_cols=361 Identities=23% Similarity=0.311 Sum_probs=254.1
Q ss_pred EEeccccccc-cCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 2 LSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 2 L~L~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
.|+++|.|+| .+|.....|++++-|.|...++. .+|..+.. +.+|++|.+++|++. .+-..++.++.||.+++..|
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence 5889999995 68999999999999999999998 89999988 789999999999988 45577899999999999999
Q ss_pred cCcc-ccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCC
Q 045598 81 HLTG-EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 159 (536)
Q Consensus 81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 159 (536)
++.. -+|.++| .+..|..|||++|+++. .|..+..-+++-+|+|++|.|..+....|-++..|-.||+++|++. .+
T Consensus 89 ~LKnsGiP~diF-~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L 165 (1255)
T KOG0444|consen 89 NLKNSGIPTDIF-RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML 165 (1255)
T ss_pred ccccCCCCchhc-ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence 8753 5888886 79999999999999984 5667778899999999999998666677888999999999999997 67
Q ss_pred CcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCC
Q 045598 160 PRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 239 (536)
Q Consensus 160 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 239 (536)
|.-+..+.+|++|.+++|.+.......+-.+++|+.|.+++.+-+-. -+|.. +..+.
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~----------------------N~Pts-ld~l~ 222 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD----------------------NIPTS-LDDLH 222 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh----------------------cCCCc-hhhhh
Confidence 77788999999999999987655445555677788888877654311 12222 44445
Q ss_pred CccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319 (536)
Q Consensus 240 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 319 (536)
+|..+|++.|.+. ..|+.+..+++|+.|+|++|+++ .+........+|++|+++.|+++ ..|++++.
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------- 289 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------- 289 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------
Confidence 5555555555555 44555555555555555555555 23333334445555555555555 33444433
Q ss_pred ceeEEeeccceeeeccccccccceEEccCCcCcC-CCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398 (536)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 398 (536)
++.|+.|.+.+|+++- -+|..++.+..|+.+..++|.+. ..|+++..|..|+.|.|+.|+
T Consensus 290 ------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 290 ------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred ------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccc
Confidence 4455555555555432 24555555666666666655555 555666666666666666665
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCc
Q 045598 399 LNGKIPHQLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~l~~N~l~ 424 (536)
+- .+|+++.-++.|+.||++.|+--
T Consensus 351 Li-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 351 LI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ee-echhhhhhcCCcceeeccCCcCc
Confidence 55 55555555666666666665544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1e-34 Score=264.19 Aligned_cols=380 Identities=28% Similarity=0.392 Sum_probs=277.6
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 81 (536)
|+.++|++. .+|..+....+++.+++++|.+. .+|.++++ +-.+..++-.+|+++ ..|.++.++.+|..+++.+|.
T Consensus 96 l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 96 LNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK 171 (565)
T ss_pred hhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc
Confidence 455566664 56666666777777777777776 66777766 446777777777776 456667777777777777777
Q ss_pred CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCc
Q 045598 82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 161 (536)
Q Consensus 82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 161 (536)
++ ..|+.... ++.|++||...|.++ ..|..++.+.+|.-|++++|++. .+| .|.+++.|.++.++.|.+. .+|.
T Consensus 172 l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpa 245 (565)
T KOG0472|consen 172 LK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPA 245 (565)
T ss_pred hh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHH
Confidence 77 66666543 778888888888777 45666788888888888888887 555 6888888888888888887 4554
Q ss_pred c-cCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC------------
Q 045598 162 W-LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG------------ 228 (536)
Q Consensus 162 ~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------------ 228 (536)
. ..+++++..|++.+|+++ ..|..+.-+++|+.||+++|.+++.++....+ +|+.|.+.||.+..
T Consensus 246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQE 323 (565)
T ss_pred HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence 4 447889999999999998 67888888999999999999998665554444 88888888884421
Q ss_pred -------------------------cccccccC---CCCCccEEEccCCcCCCccchhhhCC--CCccEEEccccccc--
Q 045598 229 -------------------------QLKRGTFF---NCSSLVTLDLSYNRLNGSISDWVDGL--SQLSHLILGHNNLE-- 276 (536)
Q Consensus 229 -------------------------~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~-- 276 (536)
..+...|. ...+.+.|++++-+++....+.|..- .-....+++.|++.
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh
Confidence 00111111 22345666666666664433333321 11445555555443
Q ss_pred ---------------------ccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecc
Q 045598 277 ---------------------GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG 335 (536)
Q Consensus 277 ---------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (536)
+-+|..++.+++|..|++++|.+.. .|..++.
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~-------------------------- 456 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGS-------------------------- 456 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhh--------------------------
Confidence 2455667788899999999887764 3433333
Q ss_pred ccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCE
Q 045598 336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415 (536)
Q Consensus 336 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 415 (536)
+..|+.|+++.|.+. ..|..+-.+..++.+-.++|++....++.+.++.+|..|||.+|.+. .+|..++++.+|++
T Consensus 457 --lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 457 --LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred --hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 456999999999887 67887777788888888899999888888999999999999999998 78888999999999
Q ss_pred EEccCCcCc
Q 045598 416 FSVAYNNLS 424 (536)
Q Consensus 416 L~l~~N~l~ 424 (536)
|++.+|++.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5.2e-32 Score=270.64 Aligned_cols=400 Identities=28% Similarity=0.323 Sum_probs=223.4
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 81 (536)
|||++|.+. .+|..+..+..|+.|.++.|.+. .+|.+... +++|+++.|..|.+. ..|..+..+++|++|++++|.
T Consensus 50 l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 50 LDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhc
Confidence 566666663 66666777777777777777776 66655544 667777777777665 566677777777777777777
Q ss_pred CccccchhHhhCCCCCCEEEcc-------------------cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCC
Q 045598 82 LTGEIPEHLAVGCVNLRFLALS-------------------NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142 (536)
Q Consensus 82 l~~~~~~~~~~~l~~L~~L~L~-------------------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 142 (536)
+. .+|..+. .+..++.+..+ .|.+.+.....+..++. .|+|++|.+. .. .+..+
T Consensus 126 f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~--dls~~ 198 (1081)
T KOG0618|consen 126 FG-PIPLVIE-VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL--DLSNL 198 (1081)
T ss_pred cC-CCchhHH-hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh--hhhhc
Confidence 66 6665442 33333333333 33333333333333333 4666666654 11 12223
Q ss_pred CccC--------------------eeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCc
Q 045598 143 SSLE--------------------GLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 202 (536)
Q Consensus 143 ~~L~--------------------~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 202 (536)
++|+ .|+.+.|.+....+. ....+|++++++.|++.. .|.++..+.+|+.++...|.
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNR 275 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchh
Confidence 3333 333333333211111 112355666666666653 33566666666666666666
Q ss_pred CcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCC-ccEEEcccccccccccc
Q 045598 203 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQ-LSHLILGHNNLEGEVPI 281 (536)
Q Consensus 203 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~ 281 (536)
+.......+...+|+.+....|.+. .+++. ..+.+.|++|++..|.+....+..+..... ++.|+.+.|++......
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 6555445555556666666666552 34433 444666666666666665333322222222 44444444444322111
Q ss_pred cccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccC
Q 045598 282 QLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN 361 (536)
Q Consensus 282 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 361 (536)
.=...+.|+.|.+.+|.+++..-+.+. ...+|+.|+|++|.+.......+.+
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~----------------------------~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLV----------------------------NFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhc----------------------------cccceeeeeecccccccCCHHHHhc
Confidence 111234455555555554433222221 1567777777777776544555677
Q ss_pred CCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccc
Q 045598 362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS 441 (536)
Q Consensus 362 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~ 441 (536)
++.|++|+||+|+++ .+|+++.+++.|++|...+|++. ..| .+..++.|+++|++.|+++...-......+.|++++
T Consensus 406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 777777777777777 45677777777777777777776 555 567777888888888877753332222346777788
Q ss_pred cccCcCC
Q 045598 442 YEGNTFL 448 (536)
Q Consensus 442 l~~n~~~ 448 (536)
++||+|.
T Consensus 483 lSGN~~l 489 (1081)
T KOG0618|consen 483 LSGNTRL 489 (1081)
T ss_pred ccCCccc
Confidence 8888764
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-30 Score=257.99 Aligned_cols=422 Identities=25% Similarity=0.334 Sum_probs=262.5
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
++|++.+++. .+|..+.....++.|+++.|.+. ..|-.+.+..-+|+.|+++.|.+. ..|..+..+.+|+.|+++.|
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence 4566777765 66666555555777777776665 555555554445777777777665 56666777777777777777
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccC-------
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNN------- 153 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n------- 153 (536)
.+. .+|... ..+.+|+++.|..|.+. ..|..+..+++|++|+++.|.+. ..|..+..+..++.+..++|
T Consensus 79 ~i~-~vp~s~-~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 79 YIR-SVPSSC-SNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred hHh-hCchhh-hhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 776 666544 56677777777777666 45666667777777777777665 34444444444444444443
Q ss_pred ------------cCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEc--------------------cCC
Q 045598 154 ------------SLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI--------------------SDN 201 (536)
Q Consensus 154 ------------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l--------------------~~n 201 (536)
.+.+.++..+..++. .|++..|.+.. ..+..+.+|+.+.. +.|
T Consensus 155 ~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 155 QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHN 229 (1081)
T ss_pred cccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccC
Confidence 333333333333333 35555555441 12223333333333 333
Q ss_pred cCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccc
Q 045598 202 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI 281 (536)
Q Consensus 202 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 281 (536)
.++ .....+...+++.++++.|.+. .++ .+...+.+|+.++...|.+. ..|..+...++|+.|....|.+. .+|.
T Consensus 230 ~l~-~~~~~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~ 304 (1081)
T KOG0618|consen 230 PLT-TLDVHPVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP 304 (1081)
T ss_pred cce-eeccccccccceeeecchhhhh-cch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC
Confidence 333 1122223344555555555443 223 33445555555555555553 33333444455555555555555 4566
Q ss_pred cccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeecccee--eeccccccccceEEccCCcCcCCCcccc
Q 045598 282 QLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAY--IYQGKVLSLLSGLDLSCNKLIGPIPLQI 359 (536)
Q Consensus 282 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 359 (536)
...+..+|++|++..|.+...++..+..... ....+....+.++. .......+.|+.|++.+|.+++.....+
T Consensus 305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~-----~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA-----SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred cccccceeeeeeehhccccccchHHHhhhhH-----HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 6677889999999999887554422221111 01111111111111 1223446789999999999999888889
Q ss_pred cCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCc
Q 045598 360 GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 439 (536)
Q Consensus 360 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 439 (536)
.+.++|+.|+|++|++.......+.+++.|++|+||||+++ .+|+.+..++.|++|...+|++. ..| .+..++.++.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 99999999999999999766667899999999999999999 78899999999999999999999 556 4668899999
Q ss_pred cccccCcC
Q 045598 440 SSYEGNTF 447 (536)
Q Consensus 440 l~l~~n~~ 447 (536)
++++-|..
T Consensus 457 lDlS~N~L 464 (1081)
T KOG0618|consen 457 LDLSCNNL 464 (1081)
T ss_pred Eecccchh
Confidence 99987743
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-29 Score=229.83 Aligned_cols=410 Identities=18% Similarity=0.199 Sum_probs=269.8
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598 24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS 103 (536)
Q Consensus 24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 103 (536)
..++.++-+++ ++|.++.. ....++|..|.|+.+.+.+|+.+++||.|||++|+|+ .|.+..|.++.++..|.+-
T Consensus 49 ~~VdCr~~GL~-eVP~~LP~---~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANLPP---ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred ceEEccCCCcc-cCcccCCC---cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhh
Confidence 35677777787 88888875 7788999999999888889999999999999999998 7777777899888877766
Q ss_pred c-CccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccc--
Q 045598 104 N-NNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE-- 180 (536)
Q Consensus 104 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-- 180 (536)
+ |+|+......|.++..|+.|.+..|++..+..++|..++++..|.+.+|.+......+|..+.+++++.+..|.+.
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 5 9999888899999999999999999998888889999999999999999988555558888999999988887632
Q ss_pred ----------cCCcccccCCCCCCEEEccCCcCcccCCCCCCCC--CccEEEccCCCCCCcccccccCCCCCccEEEccC
Q 045598 181 ----------GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL--SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 248 (536)
Q Consensus 181 ----------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 248 (536)
...+..+++.....-..+.+.++..+.+.-+... ++.+--.+.+...+..|...|..+++|+.|++++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 1222333333333333333333333322222111 2221122233333455666678888888888888
Q ss_pred CcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccc-eeE----
Q 045598 249 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE-KFE---- 323 (536)
Q Consensus 249 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~-~~~---- 323 (536)
|++++..+.+|.+...+++|.|..|++...-...|.++..|+.|++.+|+|+...|..|..........+.. -+.
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 888887788888888888888888888766666778888888888888888877777776644333222111 000
Q ss_pred -------EeeccceeeeccccccccceEEccCCcCcC---CCcccc---------cCCCCCCEE-eCCCccCCCCCcccc
Q 045598 324 -------FTTKNIAYIYQGKVLSLLSGLDLSCNKLIG---PIPLQI---------GNLTRIQTL-NLSHNNLTGSIPSTF 383 (536)
Q Consensus 324 -------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~---------~~l~~L~~L-~L~~n~l~~~~~~~~ 383 (536)
+........+.-+.+..++.+.++...+.+ ..|+.. ..++-+.+. .-|+..+. .+|..+
T Consensus 364 l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i 442 (498)
T KOG4237|consen 364 LAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI 442 (498)
T ss_pred hHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence 001112222333445567777777665432 112211 112222222 22222222 333332
Q ss_pred cCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccC
Q 045598 384 SNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 445 (536)
Q Consensus 384 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n 445 (536)
. ..-.++++.+|.++ .+|+. .+.+| .+|+++|+++......+..++.+.++-++.|
T Consensus 443 P--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 443 P--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred C--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2 34556788888887 55554 55667 7888888888766666666666666655544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.5e-24 Score=238.36 Aligned_cols=341 Identities=21% Similarity=0.230 Sum_probs=215.6
Q ss_pred CCcCCCCCcCEEEccCCc------CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccch
Q 045598 15 LPIHSHKRLGMLDISNNN------FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPE 88 (536)
Q Consensus 15 ~~~~~~~~L~~L~ls~~~------~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 88 (536)
.+|..|++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ..++|+.|+++++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 346777778877775442 223456655554456778877777765 456555 4577788888877776 6666
Q ss_pred hHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCC
Q 045598 89 HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR 168 (536)
Q Consensus 89 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 168 (536)
.+ ..+++|+.|+++++......+ .+..+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ ++++
T Consensus 629 ~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 55 567778888887664332333 35667778888887776555667777777788888887765444556544 5777
Q ss_pred CCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCC---C---cccccccCCCCCcc
Q 045598 169 LQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH---G---QLKRGTFFNCSSLV 242 (536)
Q Consensus 169 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~ 242 (536)
|+.|++++|......|.. ..+|+.|++++|.+.. .|....+.+|+.|.+.++... + .+.+..+...++|+
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 777877777543333322 3567777777777653 344445566666666553221 0 11111123345777
Q ss_pred EEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322 (536)
Q Consensus 243 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (536)
.|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|..
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------------- 844 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------------- 844 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----------------
Confidence 77777776666667777777777777777765444555544 5677777777776533322221
Q ss_pred EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398 (536)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 398 (536)
..+|++|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 845 ---------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ---------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 346777777777776 466677777777777777754433556666677777777777774
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=5.7e-28 Score=219.99 Aligned_cols=331 Identities=22% Similarity=0.236 Sum_probs=217.3
Q ss_pred EEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeeccc-
Q 045598 74 FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNN- 152 (536)
Q Consensus 74 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~- 152 (536)
..+.++-.++ ++|..+ .+.-.+++|..|+|+.+++.+|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 3445555566 666554 24566777777777777777777777777777777777777777777777776665555
Q ss_pred CcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccc
Q 045598 153 NSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 232 (536)
Q Consensus 153 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 232 (536)
|+|++.-...|.++..++.|.+.-|++..+....|..++++..|.+.+|.+..+ ..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i------------------------~~ 181 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI------------------------CK 181 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh------------------------cc
Confidence 777755556677777777777777777767777777777777777777766532 22
Q ss_pred cccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccch
Q 045598 233 GTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTL 312 (536)
Q Consensus 233 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 312 (536)
..|..+..++.+.+..|.+.. ..+++.+.... ...|..+++.....-..+.+.++..+.+..|...
T Consensus 182 ~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-- 247 (498)
T KOG4237|consen 182 GTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-- 247 (498)
T ss_pred ccccchhccchHhhhcCcccc-----ccccchhhhHH-------hhchhhcccceecchHHHHHHHhcccchhhhhhh--
Confidence 224444445555544443210 00111111000 0111122222222223333333332222222110
Q ss_pred hhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCc-ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCE
Q 045598 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP-LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVES 391 (536)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 391 (536)
...+..=-.+.+....+.| ..|..+++|++|+|++|.++++-+.+|+++..+++
T Consensus 248 -------------------------~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 248 -------------------------LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred -------------------------HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 0001000111222222333 46899999999999999999999999999999999
Q ss_pred EeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC---------------CC
Q 045598 392 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP---------------IC 456 (536)
Q Consensus 392 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~---------------~C 456 (536)
|.|..|++...-..+|.+++.|+.|++.+|+|++..|.+|....++.++.+-+|||.|+|.+. .|
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C 382 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC 382 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence 999999999888889999999999999999999999999999999999999999999999874 69
Q ss_pred CCCCCCCcccCCCCc
Q 045598 457 RSPATMSEASIGNER 471 (536)
Q Consensus 457 ~~~~~~~~~~~~~~~ 471 (536)
..|...++.++.+..
T Consensus 383 q~p~~~~~~~~~dv~ 397 (498)
T KOG4237|consen 383 QSPGFVRQIPISDVA 397 (498)
T ss_pred CCCchhccccchhcc
Confidence 999888777665543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.8e-23 Score=232.77 Aligned_cols=342 Identities=22% Similarity=0.260 Sum_probs=251.0
Q ss_pred CChhHhhcCCCCcEEEccCCC------CcccCCccCCCCC-CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCc
Q 045598 37 IPVEIADVLPSLYAFNNSMNA------LDGSIPSSFGNMK-FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG 109 (536)
Q Consensus 37 ~p~~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (536)
+....+..|++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..+ ...+|++|++++|.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 445556668899998886543 2234566676664 6899999988887 888765 46889999999988874
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccC
Q 045598 110 HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQ 189 (536)
Q Consensus 110 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 189 (536)
.+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|..-...|..+ .
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 556677889999999988764445553 7788899999998887666788888889999999998875444555544 6
Q ss_pred CCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCC-------CccchhhhCC
Q 045598 190 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN-------GSISDWVDGL 262 (536)
Q Consensus 190 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l 262 (536)
+++|+.|++++|...+..|.. ..+|+.|++++|.+. .+|.. ..+++|++|.+.++... ...+..+...
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccchhhhhcc
Confidence 788999999888655444433 357888888888874 45543 25678888888764321 1112223345
Q ss_pred CCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccc
Q 045598 263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS 342 (536)
Q Consensus 263 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 342 (536)
++|+.|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------------~L~sL~ 828 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----------------------------NLESLE 828 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------------CccccC
Confidence 789999999988777788889999999999998876444444332 167899
Q ss_pred eEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCc
Q 045598 343 GLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422 (536)
Q Consensus 343 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 422 (536)
.|++++|......|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 829 ~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999998655445542 368899999999998 577888999999999999864433567677888999999999886
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.4e-20 Score=194.98 Aligned_cols=263 Identities=27% Similarity=0.332 Sum_probs=132.7
Q ss_pred CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeec
Q 045598 71 FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL 150 (536)
Q Consensus 71 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 150 (536)
.-..|+++++.++ .+|..+. .+|+.|++.+|+++.... ..++|++|++++|+++. +|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 4456666666666 5665542 356666666666664321 23566666666666653 2321 245666666
Q ss_pred ccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcc
Q 045598 151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 230 (536)
Q Consensus 151 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 230 (536)
++|.+. .+|.. .++|+.|++++|+++.. |. ..++|+.|++++|++++... ..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---lp----------------- 321 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---LP----------------- 321 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---Cc-----------------
Confidence 666554 23321 23455666666665532 22 13456666666665553211 11
Q ss_pred cccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccccc
Q 045598 231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT 310 (536)
Q Consensus 231 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 310 (536)
.+|+.|++++|.+++ +|.. ..+|+.|++++|+++. +|.. .++|+.|++++|.++. +|..
T Consensus 322 --------~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---- 380 (788)
T PRK15387 322 --------SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---- 380 (788)
T ss_pred --------ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc----
Confidence 234444455554442 2221 1345555555555552 3321 2345555555555542 1211
Q ss_pred chhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCC
Q 045598 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVE 390 (536)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 390 (536)
+.+|+.|++++|.+++ +|.. .++|+.|++++|++++ +|.. ..+|+
T Consensus 381 ---------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~ 425 (788)
T PRK15387 381 ---------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLL 425 (788)
T ss_pred ---------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhh
Confidence 2245556666665553 3321 2456666666666663 3332 23456
Q ss_pred EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCC
Q 045598 391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430 (536)
Q Consensus 391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 430 (536)
.|++++|+++ .+|..+.++++|+.|++++|++++..+..
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 6666666666 45666666666666666666666554443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.4e-20 Score=193.19 Aligned_cols=263 Identities=25% Similarity=0.305 Sum_probs=131.5
Q ss_pred CcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEcc
Q 045598 48 LYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLE 127 (536)
Q Consensus 48 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 127 (536)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++... . ..++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc-C---cccccceeecc
Confidence 445555555555 3444333 24555555555555 4443 2355555665555555332 1 12455566666
Q ss_pred CCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccC
Q 045598 128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 207 (536)
Q Consensus 128 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 207 (536)
+|.+.. +|.. ..+|+.|++++|.+. .+|. ..++|+.|++++|++.+. |.. ..+|+.|++++|.+++.+
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCcccccc
Confidence 665542 2221 234556666666665 2332 135566666666666532 221 234566666666655321
Q ss_pred CCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCC
Q 045598 208 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN 287 (536)
Q Consensus 208 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 287 (536)
.. . ++|+.|++++|++++ +|.. .++|+.|++++|.+.. +|.. .+
T Consensus 339 -~l--p-------------------------~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 339 -TL--P-------------------------SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred -cc--c-------------------------cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence 10 0 234444444444442 2221 1344445555555542 3321 23
Q ss_pred CCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCE
Q 045598 288 QLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT 367 (536)
Q Consensus 288 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 367 (536)
+|+.|++++|.+++. |.. ++.|+.|++++|.++. +|.. ..+|+.
T Consensus 383 ~L~~LdLs~N~Lt~L-P~l-------------------------------~s~L~~LdLS~N~Lss-IP~l---~~~L~~ 426 (788)
T PRK15387 383 GLKELIVSGNRLTSL-PVL-------------------------------PSELKELMVSGNRLTS-LPML---PSGLLS 426 (788)
T ss_pred ccceEEecCCcccCC-CCc-------------------------------ccCCCEEEccCCcCCC-CCcc---hhhhhh
Confidence 455556655555532 111 2345566666666553 3332 235666
Q ss_pred EeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhh
Q 045598 368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQL 407 (536)
Q Consensus 368 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 407 (536)
|++++|+++ .+|+.+..+++|+.|+|++|++++..+..+
T Consensus 427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 677777766 456666666777777777777766555544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.3e-18 Score=179.79 Aligned_cols=118 Identities=25% Similarity=0.335 Sum_probs=58.7
Q ss_pred CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeec
Q 045598 71 FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL 150 (536)
Q Consensus 71 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 150 (536)
+...|+++++.++ .+|..+ .++|+.|++++|.++.... .+. ++|++|++++|.+. .+|..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~-~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPE-NLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCCh-hhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 3455666666555 555443 2355666666666553322 221 35666666666555 2333222 24566666
Q ss_pred ccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598 151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 151 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
++|.+. .+|..+. .+|+.|++++|++.. .|..+. ++|+.|++++|+++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc
Confidence 666555 3343332 355566666555552 233222 35555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=4e-18 Score=177.99 Aligned_cols=161 Identities=22% Similarity=0.293 Sum_probs=88.8
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
+...|++++++++ .+|..+. +.++.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 4566667666666 5665554 25667777777666 3444332 46677777777666 5665442 3566667
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 181 (536)
+++|.+..+ +..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|.+..
T Consensus 248 Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINRITEL-PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCccCcC-ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 766666633 22232 35666666666665 3344332 356666666666652 333222 345666666666553
Q ss_pred CCcccccCCCCCCEEEccCCcCcc
Q 045598 182 PIPVEFCQLDLLQILDISDNNISG 205 (536)
Q Consensus 182 ~~~~~~~~l~~L~~L~l~~n~~~~ 205 (536)
. |..+ .++|+.|++++|.+++
T Consensus 319 L-P~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 319 L-PETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred C-Cccc--cccceeccccCCcccc
Confidence 2 2222 2455666666665553
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.2e-19 Score=176.28 Aligned_cols=58 Identities=26% Similarity=0.157 Sum_probs=27.9
Q ss_pred EEEccCCcCccccchhHhhCCCCCCEEEcccCccCcc----CCccccCCCCCCEEEccCCcC
Q 045598 74 FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGH----MFSRNFNLTNLKWLQLEGSRF 131 (536)
Q Consensus 74 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i 131 (536)
.|+|..+.+++.--...+..+.+|++|+++++.++.. ....+...+++++++++++.+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 3555555555322223334555666666666665432 112233444455555554443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.4e-18 Score=168.76 Aligned_cols=277 Identities=25% Similarity=0.266 Sum_probs=150.4
Q ss_pred CEEeccccccc-cCCCCcCCCCCcCEEEccCCcCccc----CChhHhhcCCCCcEEEccCCCCcc------cCCccCCCC
Q 045598 1 TLSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGH----IPVEIADVLPSLYAFNNSMNALDG------SIPSSFGNM 69 (536)
Q Consensus 1 ~L~L~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~----~p~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l 69 (536)
+|+|..+++++ .....+..++.|+.|+++++.+++. ++..+. ..+.++.++++.+.+.+ .++..+.++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 46777777763 3333455667788888888877532 222222 24568888888776651 233456667
Q ss_pred CCCCEEEccCCcCccccchhHhhCCCC---CCEEEcccCccCcc----CCccccCC-CCCCEEEccCCcCccc----CCc
Q 045598 70 KFLQFLDLSNNHLTGEIPEHLAVGCVN---LRFLALSNNNLQGH----MFSRNFNL-TNLKWLQLEGSRFVGE----IPQ 137 (536)
Q Consensus 70 ~~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~i~~~----~~~ 137 (536)
++|+.|++++|.+.+..+..+ ..+.+ |++|++++|.+... ....+..+ ++|+.|++++|.+++. .+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 788888888877763333332 33333 77777777776531 12233444 6677777777766521 222
Q ss_pred CCCCCCccCeeecccCcCCCC----CCcccCCCCCCCeEEccCCccccCC----cccccCCCCCCEEEccCCcCcccCCC
Q 045598 138 SLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQCIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGSLPS 209 (536)
Q Consensus 138 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~ 209 (536)
.+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.. ...+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 344555666777766666531 1122334456666666666654222 22334455566666666554421000
Q ss_pred CCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCC----ccchhhhCCCCccEEEccccccccc----ccc
Q 045598 210 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGE----VPI 281 (536)
Q Consensus 210 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 281 (536)
.+........+.|++|++++|.+++ .+...+..+++|+.+++++|.++.. ...
T Consensus 240 -------------------~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 240 -------------------ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred -------------------HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 0000101123566777777776652 1223344456677777777766633 222
Q ss_pred cccCC-CCCCEEecCCCc
Q 045598 282 QLCEL-NQLQLLDLSNNN 298 (536)
Q Consensus 282 ~~~~l-~~L~~L~l~~n~ 298 (536)
.+... +.|+.+++.+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 33333 566666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.6e-18 Score=139.50 Aligned_cols=177 Identities=27% Similarity=0.426 Sum_probs=91.6
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI 318 (536)
Q Consensus 239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 318 (536)
.+++.|.++.|+++ ..|..+..+.+|+.|++.+|++. ..|..++.++.|+.|++.-|++. ..|..|+.
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs--------- 100 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS--------- 100 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC---------
Confidence 34444444444444 22223444445555555555544 34444445555555555444443 33333333
Q ss_pred cceeEEeeccceeeeccccccccceEEccCCcCcC-CCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCC
Q 045598 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397 (536)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 397 (536)
++.|+.||+++|++.. ..|..|-.+..|+.|+|++|.+. .+|..++.+++|+.|.+++|
T Consensus 101 -------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 101 -------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred -------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 3445555555544432 34555555666666666666666 45555666666666666666
Q ss_pred cccccCchhhhCCCCCCEEEccCCcCcccCCCCcccccc---CCccccccCcCCC
Q 045598 398 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFAT---FNESSYEGNTFLC 449 (536)
Q Consensus 398 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---l~~l~l~~n~~~c 449 (536)
.+- ..|..++.+..|+.|.+.+|+++...|+ ++.+.- -....++.|||.-
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 665 5566666666666666666666633332 323221 1234567788764
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=8.1e-18 Score=136.62 Aligned_cols=157 Identities=27% Similarity=0.421 Sum_probs=89.6
Q ss_pred CCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEE
Q 045598 46 PSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ 125 (536)
Q Consensus 46 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 125 (536)
.+++.|.+++|+++ .+|..+..+.+|++|++++|+++ .+|..+ ..+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 34455555555555 33444555555555555555555 555555 45555555555555554 4455555556666666
Q ss_pred ccCCcCc-ccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598 126 LEGSRFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 126 L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
+.+|.+. ..+|..|-.+..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.+..|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 6555543 244555556666666666666665 45555666666666666666654 45566666666666666666665
Q ss_pred ccCC
Q 045598 205 GSLP 208 (536)
Q Consensus 205 ~~~~ 208 (536)
-.+|
T Consensus 187 vlpp 190 (264)
T KOG0617|consen 187 VLPP 190 (264)
T ss_pred ecCh
Confidence 4433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=4.1e-14 Score=147.57 Aligned_cols=118 Identities=35% Similarity=0.593 Sum_probs=107.3
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 419 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 419 (536)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCcccc-ccCCccccccCcCCCCCCC-CCCC
Q 045598 420 YNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-PICR 457 (536)
Q Consensus 420 ~N~l~~~~~~~~~~~-~~l~~l~l~~n~~~c~~~l-~~C~ 457 (536)
+|++++.+|..+... ..+..+++.+|+..|+++. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999877553 4566888999999998753 4564
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=2.6e-12 Score=114.24 Aligned_cols=133 Identities=27% Similarity=0.264 Sum_probs=91.5
Q ss_pred CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccc
Q 045598 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL 340 (536)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (536)
.+..|+++++++|.|+ .+..+..-.|.++.|+++.|.+..... + ..+++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L----------------------------a~L~~ 330 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L----------------------------AELPQ 330 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h----------------------------hhccc
Confidence 3456778888888777 566666677788888888877663211 1 12667
Q ss_pred cceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC-chhhhCCCCCCEEEcc
Q 045598 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI-PHQLVELKTLEVFSVA 419 (536)
Q Consensus 341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~ 419 (536)
|+.||+++|.++ ....+-..+.+.++|.|++|.+.+. +++..+-+|..||+++|+|.... -..++++|-|+.+.+.
T Consensus 331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 788888888776 3444556677888888888887743 56677778888888888876322 2346677778888888
Q ss_pred CCcCcccC
Q 045598 420 YNNLSGEI 427 (536)
Q Consensus 420 ~N~l~~~~ 427 (536)
+|++.+..
T Consensus 408 ~NPl~~~v 415 (490)
T KOG1259|consen 408 GNPLAGSV 415 (490)
T ss_pred CCCccccc
Confidence 88877543
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=1e-12 Score=119.49 Aligned_cols=176 Identities=19% Similarity=0.197 Sum_probs=89.8
Q ss_pred cCCCCCCEEEccCCcCccc----CCcCCCCCCccCeeecccCc---CCCCCCc-------ccCCCCCCCeEEccCCcccc
Q 045598 116 FNLTNLKWLQLEGSRFVGE----IPQSLSKCSSLEGLYLNNNS---LSGKIPR-------WLGNLTRLQCIIMPNNHLEG 181 (536)
Q Consensus 116 ~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~---~~~~~~~-------~~~~l~~L~~L~l~~n~~~~ 181 (536)
..+..++.+++++|.+... +...+.+.++|+..++++-. ....+|. .+..+++|++++|++|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3556677777777765422 22334455566666665421 1112221 22334456666666655442
Q ss_pred CCccc----ccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc---
Q 045598 182 PIPVE----FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS--- 254 (536)
Q Consensus 182 ~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--- 254 (536)
..+.. +.++..|++|.+.+|.+........ ...|..+. .......-++|+.+....|++...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELA----------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHH----------HHhccCCCcceEEEEeeccccccccHH
Confidence 22221 2334455555555554431111000 00000000 001133456788888888877532
Q ss_pred -cchhhhCCCCccEEEccccccccc----ccccccCCCCCCEEecCCCcCCCC
Q 045598 255 -ISDWVDGLSQLSHLILGHNNLEGE----VPIQLCELNQLQLLDLSNNNLHGP 302 (536)
Q Consensus 255 -~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 302 (536)
+...|+..+.|+.+.+..|.|... ....|..+++|++|||++|.++..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 233456677888888888877532 234567788888888888877643
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=4.3e-11 Score=119.56 Aligned_cols=194 Identities=33% Similarity=0.432 Sum_probs=101.8
Q ss_pred EEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCC-CCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598 25 MLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMK-FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS 103 (536)
Q Consensus 25 ~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 103 (536)
.++++.+.+. ..+..+.. .+.+..+++..|.++ .++......+ +|+.|++++|.+. .+|..+ +.+++|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccC
Confidence 3555555443 22222222 245666666666655 3344444443 6666666666665 554333 456666666666
Q ss_pred cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045598 104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI 183 (536)
Q Consensus 104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 183 (536)
+|+++...+ .....++|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .
T Consensus 172 ~N~l~~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 172 FNDLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred Cchhhhhhh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence 666653322 2224566666666666655 33333334445666666666432 234445555666666666655542 2
Q ss_pred cccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598 184 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 228 (536)
Q Consensus 184 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 228 (536)
+..+..+++++.|++++|.++.... .....+++.++++++.+..
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 4455555666666666666654433 4445566666666665543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=3.7e-11 Score=102.67 Aligned_cols=111 Identities=28% Similarity=0.346 Sum_probs=33.0
Q ss_pred cCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCC
Q 045598 17 IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN 96 (536)
Q Consensus 17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 96 (536)
+.+..+++.|+|++|.|+ .+. .+...+.+|+.|++++|.++.. ..+..+++|+.|++++|.++ .++..+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 344556777777777776 332 3443356777777777777643 24666777777777777777 565544345677
Q ss_pred CCEEEcccCccCccC-CccccCCCCCCEEEccCCcCc
Q 045598 97 LRFLALSNNNLQGHM-FSRNFNLTNLKWLQLEGSRFV 132 (536)
Q Consensus 97 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~ 132 (536)
|++|++++|++.... ...+..+++|++|++.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777777775422 234445566666666666554
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.6e-12 Score=117.90 Aligned_cols=208 Identities=22% Similarity=0.144 Sum_probs=129.1
Q ss_pred CCCCcEEEccCCCCcccCC-ccCCCCCCCCEEEccCCcCccccc--hhHhhCCCCCCEEEcccCccCccCCcc-ccCCCC
Q 045598 45 LPSLYAFNNSMNALDGSIP-SSFGNMKFLQFLDLSNNHLTGEIP--EHLAVGCVNLRFLALSNNNLQGHMFSR-NFNLTN 120 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 120 (536)
+++|+.+.+.++.+..... .....+++++.|||++|-+. .+. ..+...+++|+.|+++.|.+....... -..+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567777777766653221 35666777888888877655 221 234467778888888877775432222 125677
Q ss_pred CCEEEccCCcCcccCC-cCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCC-cccccCCCCCCEEEc
Q 045598 121 LKWLQLEGSRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI-PVEFCQLDLLQILDI 198 (536)
Q Consensus 121 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l 198 (536)
|+.|.++.|.++.... .....+|+|+.|++++|...........-++.|++|++++|++.... ......++.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 8888888887763211 22345677888888877532233334455677888888887765332 234566777888888
Q ss_pred cCCcCcccCC-CC------CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCC
Q 045598 199 SDNNISGSLP-SC------FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253 (536)
Q Consensus 199 ~~n~~~~~~~-~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 253 (536)
+.+.+..+.. +. -..++|+.|++..|++...-.-..+..+++|+.|.+..|.++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 8777764322 11 2566788888888887543333334556778888887877763
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.9e-12 Score=124.81 Aligned_cols=171 Identities=30% Similarity=0.446 Sum_probs=112.1
Q ss_pred cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598 217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296 (536)
Q Consensus 217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 296 (536)
...+++.|.+. +++.. +..+..|+.+.+..|.+. .+|..+..+..|..++++.|++. ..|..++.++ |+.|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 34555556553 34433 455556666666666665 55666666667777777777766 5555566554 66777777
Q ss_pred CcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC
Q 045598 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT 376 (536)
Q Consensus 297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 376 (536)
|+++..+++ ++ ....|..||.+.|.+. ..|..++++.+|+.|++..|++.
T Consensus 153 Nkl~~lp~~-ig----------------------------~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 153 NKLTSLPEE-IG----------------------------LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred CccccCCcc-cc----------------------------cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence 766633322 22 1456777888888776 45666777788888888888877
Q ss_pred CCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598 377 GSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 377 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 425 (536)
. .|+.+.. -.|..||++.|+++ .+|-.|..|+.|++|.|.+|+++.
T Consensus 203 ~-lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 203 D-LPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred h-CCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 4 4444443 35777888888887 777778888888888888888874
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.2e-11 Score=110.02 Aligned_cols=132 Identities=33% Similarity=0.352 Sum_probs=105.2
Q ss_pred CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315 (536)
Q Consensus 236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 315 (536)
.....|+++|+++|.|+ .+.....-.|.++.|++++|.+... .. +..+++|+.||+++|.++......
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~L~~L~~LDLS~N~Ls~~~Gwh--------- 348 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QN-LAELPQLQLLDLSGNLLAECVGWH--------- 348 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hh-hhhcccceEeecccchhHhhhhhH---------
Confidence 34467999999999998 5566677789999999999999843 32 778999999999999877432211
Q ss_pred ccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCC-cccccCCCCCCEEeC
Q 045598 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKYVESLDL 394 (536)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 394 (536)
..+.+++.|.+++|.+.. -..++.+-+|..||+++|+|.... ...++++|.|+++.|
T Consensus 349 --------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 349 --------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred --------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 126789999999998753 345777889999999999998432 346899999999999
Q ss_pred CCCcccc
Q 045598 395 SNNKLNG 401 (536)
Q Consensus 395 ~~n~l~~ 401 (536)
.+|.+.+
T Consensus 407 ~~NPl~~ 413 (490)
T KOG1259|consen 407 TGNPLAG 413 (490)
T ss_pred cCCCccc
Confidence 9999983
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=7.9e-11 Score=117.69 Aligned_cols=199 Identities=34% Similarity=0.462 Sum_probs=115.2
Q ss_pred eEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCc
Q 045598 171 CIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 250 (536)
Q Consensus 171 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 250 (536)
.+....+.+. .....+...+.++.+++.+|.++...+...... ++|+.|++++|.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N~ 151 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDNK 151 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCccccccch------------------------hhcccccccccc
Confidence 4555555553 122333444566666666666654333222221 256666666666
Q ss_pred CCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccce
Q 045598 251 LNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIA 330 (536)
Q Consensus 251 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (536)
+. .++..+..+++|+.|++++|++. .++......+.|+.|++++|.+....+.. .
T Consensus 152 i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~---------------------- 206 (394)
T COG4886 152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E---------------------- 206 (394)
T ss_pred hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h----------------------
Confidence 65 33344556666666666666666 34444445666777777776666433321 0
Q ss_pred eeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCC
Q 045598 331 YIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL 410 (536)
Q Consensus 331 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 410 (536)
.+..|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..+++++.|++++|+++.... +..+
T Consensus 207 ------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~ 276 (394)
T COG4886 207 ------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSL 276 (394)
T ss_pred ------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--cccc
Confidence 0344666777776433 345556666777777777777663 35566677777777777777764433 6667
Q ss_pred CCCCEEEccCCcCcccCCC
Q 045598 411 KTLEVFSVAYNNLSGEIPE 429 (536)
Q Consensus 411 ~~L~~L~l~~N~l~~~~~~ 429 (536)
.+++.|++++|.++...|.
T Consensus 277 ~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 277 TNLRELDLSGNSLSNALPL 295 (394)
T ss_pred CccCEEeccCccccccchh
Confidence 7777777777777655444
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=2.3e-10 Score=119.62 Aligned_cols=113 Identities=33% Similarity=0.510 Sum_probs=99.7
Q ss_pred CCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCE
Q 045598 288 QLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT 367 (536)
Q Consensus 288 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 367 (536)
.++.|+|++|.+.+..|..+.. +++|+.|++++|.+.+.+|..++.+++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~----------------------------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~ 470 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK----------------------------LRHLQSINLSGNSIRGNIPPSLGSITSLEV 470 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC----------------------------CCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 3678888888888887776654 679999999999999999999999999999
Q ss_pred EeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCC-CCCCEEEccCCcCcccCC
Q 045598 368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 368 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~ 428 (536)
|+|++|++++.+|+.+..+++|+.|+|++|++++.+|..+... .++..+++.+|...+..|
T Consensus 471 LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999999999999999999999999988764 467889999998665443
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=1.5e-12 Score=125.37 Aligned_cols=176 Identities=28% Similarity=0.436 Sum_probs=133.4
Q ss_pred CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCC
Q 045598 19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLR 98 (536)
Q Consensus 19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 98 (536)
.+..-...|++.|++. .+|..+.. +-.|+.+.+..|.+. .+|.+++++..|.+|+|+.|+++ .+|..++ .--|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence 3455567788888887 77877665 447777788888877 67788888888888888888888 7887773 34688
Q ss_pred EEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCc
Q 045598 99 FLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178 (536)
Q Consensus 99 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 178 (536)
.|.+++|+++ ..+..++.+..|..|+.+.|.+. .+|..+.++.+|+.|.+..|.+. ..|..+..+ .|..|+++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence 8888888887 45556667788888888888877 55666778888888888888876 456556644 47788888888
Q ss_pred cccCCcccccCCCCCCEEEccCCcCcc
Q 045598 179 LEGPIPVEFCQLDLLQILDISDNNISG 205 (536)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~n~~~~ 205 (536)
+. ..|-.|..|..|++|.|.+|.+..
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCCC
Confidence 87 567788888888888888888764
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=9.1e-11 Score=100.25 Aligned_cols=109 Identities=25% Similarity=0.290 Sum_probs=42.5
Q ss_pred cccccceEEccCCcCcCCCccccc-CCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCE
Q 045598 337 VLSLLSGLDLSCNKLIGPIPLQIG-NLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415 (536)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 415 (536)
.+..+++|+|.+|.++.. +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+|+++.+.....+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 356789999999999853 3454 578999999999999954 56888999999999999999654433346899999
Q ss_pred EEccCCcCcccCC-CCccccccCCccccccCcCCC
Q 045598 416 FSVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLC 449 (536)
Q Consensus 416 L~l~~N~l~~~~~-~~~~~~~~l~~l~l~~n~~~c 449 (536)
|++++|++..... ..+..+++++.+++.|||..-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999986332 345568889999999999743
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=2.7e-11 Score=110.36 Aligned_cols=252 Identities=22% Similarity=0.196 Sum_probs=128.5
Q ss_pred cCCCCCcCEEEccCCcCcccCChhHhhc---CCCCcEEEccCCCCcc----cCC-------ccCCCCCCCCEEEccCCcC
Q 045598 17 IHSHKRLGMLDISNNNFRGHIPVEIADV---LPSLYAFNNSMNALDG----SIP-------SSFGNMKFLQFLDLSNNHL 82 (536)
Q Consensus 17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~---l~~L~~L~l~~n~~~~----~~~-------~~~~~l~~L~~L~L~~n~l 82 (536)
+..+..++.+++|+|.+...-...+... .+.|+..+++. -++| .+| .++.++++|++||||+|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3455666777777766643222222222 23555555543 1222 222 2234455666666666655
Q ss_pred ccccchh---HhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCC
Q 045598 83 TGEIPEH---LAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 159 (536)
Q Consensus 83 ~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 159 (536)
....++. +..++..|++|.|.+|.+.......+. ..|..|. . ......-+.|+++....|++....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--V-------NKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--H-------HhccCCCcceEEEEeecccccccc
Confidence 4222221 223455555555555554322111111 0011111 0 011223345666666666654221
Q ss_pred C----cccCCCCCCCeEEccCCccccC----CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccc
Q 045598 160 P----RWLGNLTRLQCIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 231 (536)
Q Consensus 160 ~----~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 231 (536)
. ..|...+.|+.+.+..|.|... ....|..+++|+.|++.+|.++.... ..-
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs--------------------~~L 233 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS--------------------VAL 233 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH--------------------HHH
Confidence 1 2345556666676666665421 12345566677777776666542211 111
Q ss_pred ccccCCCCCccEEEccCCcCCCccchhh-----hCCCCccEEEcccccccccc----cccccCCCCCCEEecCCCcCC
Q 045598 232 RGTFFNCSSLVTLDLSYNRLNGSISDWV-----DGLSQLSHLILGHNNLEGEV----PIQLCELNQLQLLDLSNNNLH 300 (536)
Q Consensus 232 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~ 300 (536)
..+++.+++|++|++++|.+.......+ ...|+|+.|.|.+|.++... .......+.|+.|++++|++.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2236667788888888888765433322 23678888888888887322 223445688888889888874
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.7e-10 Score=123.22 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=25.2
Q ss_pred cccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCC
Q 045598 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378 (536)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 378 (536)
+.++|+.|.+..+.....+......+..++.+.+..+.+.+.
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 356777777777766555544455555566555555555543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=3.1e-10 Score=121.20 Aligned_cols=180 Identities=25% Similarity=0.299 Sum_probs=107.7
Q ss_pred CCCcCEEEccCCc--CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598 20 HKRLGMLDISNNN--FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL 97 (536)
Q Consensus 20 ~~~L~~L~ls~~~--~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 97 (536)
++.|+.|-+.+|. +. .++..++..+|.|++||+++|.--+.+|..++++-+||+|+++++.+. .+|..+ +.+..|
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHHhh
Confidence 4578888887775 44 677777777888888888877655577888888888888888888887 788777 677888
Q ss_pred CEEEcccCccCccCCccccCCCCCCEEEccCCcCc--ccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCC----e
Q 045598 98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFV--GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ----C 171 (536)
Q Consensus 98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~ 171 (536)
.+|++..+.-....+.....+++|++|.+...... ...-..+.++.+|+.+....... ..-..+..++.|. .
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 88888776654444555556788888887665421 11112233444444444432221 0001122233332 2
Q ss_pred EEccCCccccCCcccccCCCCCCEEEccCCcCcc
Q 045598 172 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205 (536)
Q Consensus 172 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 205 (536)
+.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus 699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 222222211 234455666777777777776653
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.9e-11 Score=112.34 Aligned_cols=113 Identities=26% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCCCCEEEccCCcCcccCCCCC--CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCcc
Q 045598 189 QLDLLQILDISDNNISGSLPSCF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLS 266 (536)
Q Consensus 189 ~l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 266 (536)
.+++|+.|+++.|++........ ....++.|.++.|.++-.--......+|+|+.|+++.|............+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 44455555555554432211111 3344555555555543111111244667777777777743223333344456677
Q ss_pred EEEcccccccccc-cccccCCCCCCEEecCCCcCCC
Q 045598 267 HLILGHNNLEGEV-PIQLCELNQLQLLDLSNNNLHG 301 (536)
Q Consensus 267 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~ 301 (536)
+|+|++|.+.... ......++.|+.|+++.+.+.+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcch
Confidence 7777777765322 1234556677777777666553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=2.4e-10 Score=80.25 Aligned_cols=60 Identities=42% Similarity=0.630 Sum_probs=34.5
Q ss_pred CCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcC
Q 045598 364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423 (536)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 423 (536)
+|++|++++|+++...++.|.++++|++|++++|+++.+.+++|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555554445555556666666666655555555555666666666655543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=4.4e-10 Score=78.90 Aligned_cols=61 Identities=51% Similarity=0.628 Sum_probs=57.3
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcc
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 399 (536)
++|++|++++|.+....+..|.++++|++|++++|.++...++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988888999999999999999999988889999999999999999985
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=2.4e-10 Score=114.32 Aligned_cols=245 Identities=30% Similarity=0.295 Sum_probs=128.3
Q ss_pred CCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEc
Q 045598 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI 198 (536)
Q Consensus 119 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 198 (536)
..++.++++.|.+.. .-..+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|..+. .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 334444444444432 112234445555555555555421 111444555555555555554332 2333444555555
Q ss_pred cCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccc
Q 045598 199 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE 278 (536)
Q Consensus 199 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 278 (536)
++|.+... .. +..+++|+.+++++|.+....+.....+.+++.+.+.+|.+...
T Consensus 148 ~~N~i~~~------------------------~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 148 SGNLISDI------------------------SG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred ccCcchhc------------------------cC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 55554421 11 33456666777777766643331035566677777777766522
Q ss_pred ccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc--ccceEEccCCcCcCCCc
Q 045598 279 VPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS--LLSGLDLSCNKLIGPIP 356 (536)
Q Consensus 279 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~ 356 (536)
..+..+..+..+++..|.++..-+... +. .|+.+++++|.+.. .+
T Consensus 202 --~~~~~~~~l~~~~l~~n~i~~~~~l~~------------------------------~~~~~L~~l~l~~n~i~~-~~ 248 (414)
T KOG0531|consen 202 --EGLDLLKKLVLLSLLDNKISKLEGLNE------------------------------LVMLHLRELYLSGNRISR-SP 248 (414)
T ss_pred --cchHHHHHHHHhhcccccceeccCccc------------------------------chhHHHHHHhcccCcccc-cc
Confidence 122333344444666666553221100 11 26777777777763 22
Q ss_pred ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc---Cchh-hhCCCCCCEEEccCCcCcccCC
Q 045598 357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK---IPHQ-LVELKTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~l~~N~l~~~~~ 428 (536)
..+..+..+..|++.+|++... ..+...+.+..+..+.|++... .... ....++++.+.+..|++....+
T Consensus 249 ~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 4566677788888888877743 3455666777777777776521 1111 3455677777788887776544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.1e-10 Score=113.50 Aligned_cols=177 Identities=27% Similarity=0.244 Sum_probs=113.8
Q ss_pred cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccc-ccccCCCCCCEEecCCCcCCCCCCccccccchh
Q 045598 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313 (536)
Q Consensus 235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 313 (536)
+..++.|+.|++++|.+... ..+..+++|+.+++++|.+...-+ . ...+.+++.+.+.+|.+........
T Consensus 136 l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~------ 206 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL------ 206 (414)
T ss_pred hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHH------
Confidence 45666788889999888743 345557888888999888874433 2 4677888888888887763322111
Q ss_pred hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC--CCEEeCCCccCCCCCcccccCCCCCCE
Q 045598 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR--IQTLNLSHNNLTGSIPSTFSNLKYVES 391 (536)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~ 391 (536)
...+..+++..|.+....+ +..+.. |+.+++++|++. ..++.+..++.+..
T Consensus 207 ------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~ 259 (414)
T KOG0531|consen 207 ------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPV 259 (414)
T ss_pred ------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccc
Confidence 2344555777777663322 222333 889999999998 34467788889999
Q ss_pred EeCCCCcccccCchhhhCCCCCCEEEccCCcCccc---CCCC-ccccccCCccccccCcCCC
Q 045598 392 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE---IPEW-TAQFATFNESSYEGNTFLC 449 (536)
Q Consensus 392 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~-~~~~~~l~~l~l~~n~~~c 449 (536)
|++++|++.... .+...+.+..+....|.+... .... ......+....+.+||..-
T Consensus 260 l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 260 LDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 999999886432 234556666677777776631 1111 3344556666666666443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=1e-09 Score=109.23 Aligned_cols=108 Identities=29% Similarity=0.340 Sum_probs=84.8
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
++.++.|+|++|+++... .+..++.|+.|||++|.+.....-...++. |+.|.+++|.++.. ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 678999999999998544 678899999999999999854333445555 99999999998743 4578999999999
Q ss_pred ccCCcCcccCC-CCccccccCCccccccCcCCCC
Q 045598 418 VAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCG 450 (536)
Q Consensus 418 l~~N~l~~~~~-~~~~~~~~l~~l~l~~n~~~c~ 450 (536)
+++|-|.+... ..+..+..+..+.++|||..|.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99998876322 1123456778899999999985
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-09 Score=95.91 Aligned_cols=87 Identities=26% Similarity=0.174 Sum_probs=49.9
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc-CccccchhHhhCCCCCCEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH-LTGEIPEHLAVGCVNLRFL 100 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L 100 (536)
+|++||||...++..--..+...+.+|+.|++.++.+.+.+...+++..+|+.|+++.+. ++..--..++.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666665543344444445666666666666666555566666666666666642 3322223344566666666
Q ss_pred EcccCccC
Q 045598 101 ALSNNNLQ 108 (536)
Q Consensus 101 ~L~~n~l~ 108 (536)
+++.|.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66666554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=5.3e-08 Score=87.15 Aligned_cols=197 Identities=21% Similarity=0.188 Sum_probs=108.2
Q ss_pred hCCCCCCEEEcccCccCcc--CCccccCCCCCCEEEccCCcCcccCCcCC-CCCCccCeeecccCcCCCC-CCcccCCCC
Q 045598 92 VGCVNLRFLALSNNNLQGH--MFSRNFNLTNLKWLQLEGSRFVGEIPQSL-SKCSSLEGLYLNNNSLSGK-IPRWLGNLT 167 (536)
Q Consensus 92 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~l~ 167 (536)
..++.++++||.+|.++.- ....+.+++.|++|+++.|.+...+ ... ....+|+.|-+.+..+.-. ....+..+|
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3455666666666666531 1223346666666766666655322 222 2345666666666554321 123345566
Q ss_pred CCCeEEccCCcccc--CCcccccCC-CCCCEEEccCC---------cCcccCCCCCCCCCccEEEccCCCCCCccccccc
Q 045598 168 RLQCIIMPNNHLEG--PIPVEFCQL-DLLQILDISDN---------NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 235 (536)
Q Consensus 168 ~L~~L~l~~n~~~~--~~~~~~~~l-~~L~~L~l~~n---------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 235 (536)
.+++|+++.|.... ......... +.++++....| ++... ++++..+.+..|.+........+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~------Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI------FPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh------cccchheeeecCcccchhhcccC
Confidence 66777666663210 111111111 12333333333 22222 34556666666655444444446
Q ss_pred CCCCCccEEEccCCcCCCcc-chhhhCCCCccEEEcccccccccccc------cccCCCCCCEEecC
Q 045598 236 FNCSSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGEVPI------QLCELNQLQLLDLS 295 (536)
Q Consensus 236 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~ 295 (536)
..+|.+.-|+|+.+++.... .+.+.+++.|..|.++++++.+.... .+.++++++.|+=+
T Consensus 221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 67777788899988887432 35677889999999999988643221 25667788877654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=8.5e-09 Score=102.79 Aligned_cols=160 Identities=23% Similarity=0.210 Sum_probs=94.6
Q ss_pred CCCcCCCCCcCEEEccCCcCccc---------CChhHhhc-------------------C--CCCcEEEccCCCCcccCC
Q 045598 14 RLPIHSHKRLGMLDISNNNFRGH---------IPVEIADV-------------------L--PSLYAFNNSMNALDGSIP 63 (536)
Q Consensus 14 ~~~~~~~~~L~~L~ls~~~~~~~---------~p~~~~~~-------------------l--~~L~~L~l~~n~~~~~~~ 63 (536)
|..+..+..|++|.+.++++... +..-|+.. + ..|...+.+.|.+. ...
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 55677889999999999876520 11111100 0 02333344444444 233
Q ss_pred ccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCC
Q 045598 64 SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCS 143 (536)
Q Consensus 64 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 143 (536)
.++.-++.|+.|+|++|+++ .+. ....+++|++|||++|.+.....-...+++ |+.|.+++|.++.. ..+.++.
T Consensus 181 ~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence 44555677777777777776 333 335777777777777777755444444555 77777777766533 3466777
Q ss_pred ccCeeecccCcCCCCC-CcccCCCCCCCeEEccCCccc
Q 045598 144 SLEGLYLNNNSLSGKI-PRWLGNLTRLQCIIMPNNHLE 180 (536)
Q Consensus 144 ~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~ 180 (536)
+|+.||+++|-+.+.. -..++.+..|+.|++.+|.+.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777777777654211 122344566677777776553
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=7.7e-08 Score=86.15 Aligned_cols=202 Identities=18% Similarity=0.135 Sum_probs=98.6
Q ss_pred CCCCCEEEccCCcCccccch--hHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCccc-CCcCCCCCCcc
Q 045598 69 MKFLQFLDLSNNHLTGEIPE--HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE-IPQSLSKCSSL 145 (536)
Q Consensus 69 l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L 145 (536)
+++++.+||.+|.++ ...+ .+..+++.|+.|+++.|.+...+..--...++|++|.|.+..+.-. ....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 345555555555554 2221 2234555555666655555432221112345566666655554321 11233445555
Q ss_pred CeeecccCcCCCC--CCcccCCC-CCCCeEEccCCcccc--CCcccccCCCCCCEEEccCCcCcccCCC--CCCCCCccE
Q 045598 146 EGLYLNNNSLSGK--IPRWLGNL-TRLQCIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPS--CFHPLSIKQ 218 (536)
Q Consensus 146 ~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~ 218 (536)
++|.++.|.+... ........ +.+++++...|.... .....-.-++++..+.+..|.+...... .-..+.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6665555532110 01111111 244445444442210 0001112345666677776766533221 113455667
Q ss_pred EEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch------hhhCCCCccEEEcc
Q 045598 219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD------WVDGLSQLSHLILG 271 (536)
Q Consensus 219 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~ 271 (536)
|.++.+++...-....+.+++.|.-|.++++++.+.... .++.+++++.|+=+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 777777776555555577888888888888887654322 23346666666543
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.8e-09 Score=91.77 Aligned_cols=179 Identities=22% Similarity=0.229 Sum_probs=114.8
Q ss_pred CccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccc--ccccccCCCCCCEE
Q 045598 215 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE--VPIQLCELNQLQLL 292 (536)
Q Consensus 215 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L 292 (536)
.++.++++...++...-...++.|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.--.. ....+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3666676666654433334467788888888888888887777788888888888887753211 22346778888888
Q ss_pred ecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCc--CcC-CCcccccCCCCCCEEe
Q 045598 293 DLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK--LIG-PIPLQIGNLTRIQTLN 369 (536)
Q Consensus 293 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~ 369 (536)
+++.|.+....-...-. ..-+.|+.|+++++. +.. .+......++.|..||
T Consensus 266 NlsWc~l~~~~Vtv~V~--------------------------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVA--------------------------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred CchHhhccchhhhHHHh--------------------------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 88888655322111000 113567888888763 211 1112235678888888
Q ss_pred CCCccCC-CCCcccccCCCCCCEEeCCCCcccccCchhh---hCCCCCCEEEccCC
Q 045598 370 LSHNNLT-GSIPSTFSNLKYVESLDLSNNKLNGKIPHQL---VELKTLEVFSVAYN 421 (536)
Q Consensus 370 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~N 421 (536)
|++|..- .-....|-.++.|++|.++.|-. ++|..+ ...|+|.+||+.++
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 8888543 22233456678888888887753 555543 45678888888776
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=7.7e-08 Score=76.08 Aligned_cols=60 Identities=23% Similarity=0.398 Sum_probs=31.4
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 400 (536)
+.++.|++++|.+. .+|..+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|.+.
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34555555555555 34444555555555555555555 33444444555555555555554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=1.4e-07 Score=83.35 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=87.3
Q ss_pred CCCCCCEEEccCCcCcccCC----cCCCCCCccCeeecccCcC---CCCCC-------cccCCCCCCCeEEccCCccccC
Q 045598 117 NLTNLKWLQLEGSRFVGEIP----QSLSKCSSLEGLYLNNNSL---SGKIP-------RWLGNLTRLQCIIMPNNHLEGP 182 (536)
Q Consensus 117 ~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~-------~~~~~l~~L~~L~l~~n~~~~~ 182 (536)
.+..++.++|++|.|..... ..+.+-.+|+..+++.-.. .+.++ ..+..+|+|+..++++|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45677778888877653322 2344445666666654211 11111 2234556666666666655433
Q ss_pred Ccc----cccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccc--
Q 045598 183 IPV----EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS-- 256 (536)
Q Consensus 183 ~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-- 256 (536)
.|. .+++-..|.+|.+++|.+......-. ...|.+| . . . .....-|.|+..+...|++..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~ri-gkal~~l--a------~-n-KKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRI-GKALFHL--A------Y-N-KKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHH-HHHHHHH--H------H-H-hhhccCCCceEEEeccchhccCcHHH
Confidence 332 23344556666666655431110000 0000000 0 0 0 002344678888888777652211
Q ss_pred --hhhhCCCCccEEEcccccccccc-----cccccCCCCCCEEecCCCcCCCC
Q 045598 257 --DWVDGLSQLSHLILGHNNLEGEV-----PIQLCELNQLQLLDLSNNNLHGP 302 (536)
Q Consensus 257 --~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~ 302 (536)
..+..-.+|+.+.+..|.|.... ...+..+.+|+.||+++|.++..
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 12333357777888777765321 12244567788888888776643
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=9.1e-08 Score=75.67 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=82.7
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 418 (536)
..|+..++++|.+....+.--...+..+.|++++|.++ ..|+.+..+++|+.|+++.|.+. ..|..+..+.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 46777899999888544433344568999999999999 46677999999999999999998 77888888999999999
Q ss_pred cCCcCcccCCCCccccccC-CccccccCcCCCCCCC
Q 045598 419 AYNNLSGEIPEWTAQFATF-NESSYEGNTFLCGLPL 453 (536)
Q Consensus 419 ~~N~l~~~~~~~~~~~~~l-~~l~l~~n~~~c~~~l 453 (536)
-+|.+. .+|..+ ..+++ -..++..+||--+|+.
T Consensus 131 ~~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 131 PENARA-EIDVDL-FYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred CCCccc-cCcHHH-hccccHHHHHhcCCcccccCcc
Confidence 999887 444432 22332 2345566777766653
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=6e-07 Score=79.50 Aligned_cols=164 Identities=21% Similarity=0.213 Sum_probs=99.0
Q ss_pred CCCCCCccCeeecccCcCCCCCC----cccCCCCCCCeEEccCCccccCCcc-------------cccCCCCCCEEEccC
Q 045598 138 SLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTRLQCIIMPNNHLEGPIPV-------------EFCQLDLLQILDISD 200 (536)
Q Consensus 138 ~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~ 200 (536)
++.+|++|+..+++.|.+....| +.+++-+.|.+|.+++|.+..+... ...+-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45566777777777776654333 2345566777777777765422111 123456777777777
Q ss_pred CcCcccCCCCC-----CCCCccEEEccCCCCCCc----ccccccCCCCCccEEEccCCcCCCc----cchhhhCCCCccE
Q 045598 201 NNISGSLPSCF-----HPLSIKQVHLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRLNGS----ISDWVDGLSQLSH 267 (536)
Q Consensus 201 n~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 267 (536)
|++..-....+ ....|+.+.+..|.|... +...-+..+.+|+.||+++|.++-. ....+..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 77652221111 224677777777766432 1111145678899999999987643 2344556778899
Q ss_pred EEcccccccccccccc------cCCCCCCEEecCCCcCCC
Q 045598 268 LILGHNNLEGEVPIQL------CELNQLQLLDLSNNNLHG 301 (536)
Q Consensus 268 L~L~~n~l~~~~~~~~------~~l~~L~~L~l~~n~~~~ 301 (536)
|.+.+|-++......+ ...|+|..|...+|.+.+
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 9999998875544332 135788888888887654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=3e-06 Score=88.74 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=37.3
Q ss_pred hCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcc-cCCcCCCCCCccCeeecccCcCCCCC------CcccC
Q 045598 92 VGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKI------PRWLG 164 (536)
Q Consensus 92 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~ 164 (536)
.++++|+.||+++++++.. .+++.+++|++|.+.+-.+.. ..-..+.++++|+.||+|........ .+.-.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 3444555555555544432 344445555555544433321 00112334455555555543322110 01112
Q ss_pred CCCCCCeEEccCCccc
Q 045598 165 NLTRLQCIIMPNNHLE 180 (536)
Q Consensus 165 ~l~~L~~L~l~~n~~~ 180 (536)
.+|+|+.|+.++..+.
T Consensus 248 ~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDIN 263 (699)
T ss_pred cCccccEEecCCcchh
Confidence 3566666666665544
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=1.4e-05 Score=67.99 Aligned_cols=81 Identities=27% Similarity=0.285 Sum_probs=36.7
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccC-CccccCCCCCCEEE
Q 045598 47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM-FSRNFNLTNLKWLQ 125 (536)
Q Consensus 47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 125 (536)
....+|++.|.+.. ...|..++.|..|.+.+|+|+ .|...+...+++|..|.|.+|.+.... ...+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44455555554432 123444555555555555555 444444444445555555555444321 12233344444444
Q ss_pred ccCCc
Q 045598 126 LEGSR 130 (536)
Q Consensus 126 L~~n~ 130 (536)
+-+|.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 44443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=6.6e-06 Score=52.63 Aligned_cols=35 Identities=43% Similarity=0.749 Sum_probs=13.4
Q ss_pred CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400 (536)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 400 (536)
|++|++++|+++. +|..+.++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 4444444444442 2223444444444444444443
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.96 E-value=2.6e-05 Score=64.27 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=44.1
Q ss_pred ccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCC
Q 045598 64 SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCS 143 (536)
Q Consensus 64 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 143 (536)
.+|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ +..+...++.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 3455555555555543 233 444444455555555555443 4444444455555555555543 22223334455555
Q ss_pred ccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCC
Q 045598 144 SLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193 (536)
Q Consensus 144 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 193 (536)
+|+.+++..+ +.......|.+. +++.+.+.. .+..+....|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555555433 322333344444 555555543 2232444445444443
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.95 E-value=2.3e-05 Score=64.60 Aligned_cols=125 Identities=21% Similarity=0.228 Sum_probs=48.1
Q ss_pred ChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccC
Q 045598 38 PVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFN 117 (536)
Q Consensus 38 p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (536)
+...+..+++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...|.++.+++.+.+.. .+.......+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 333444444555555543 344344445555555666655553 44 45555555555566666543 333344445555
Q ss_pred CCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCC
Q 045598 118 LTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 169 (536)
Q Consensus 118 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 169 (536)
+++|+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666666443 333344455555 666666554 3332344455555544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=1.5e-05 Score=67.78 Aligned_cols=86 Identities=23% Similarity=0.202 Sum_probs=37.9
Q ss_pred ccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCC-cccCCCCCCCeEEccCCccccCC---cccccCC
Q 045598 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLQCIIMPNNHLEGPI---PVEFCQL 190 (536)
Q Consensus 115 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l 190 (536)
|..++.|.+|.+.+|+|+.+.|..-..+++|+.|.+.+|.+..... ..+..+|+|++|.+-+|.++... ...+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3344444444444444444443333334445555555544432110 12344455555555555443211 1234455
Q ss_pred CCCCEEEccC
Q 045598 191 DLLQILDISD 200 (536)
Q Consensus 191 ~~L~~L~l~~ 200 (536)
++|+.||+++
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 5666665543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=8.8e-06 Score=52.06 Aligned_cols=38 Identities=39% Similarity=0.649 Sum_probs=32.1
Q ss_pred CCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598 387 KYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 387 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 425 (536)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 456679999999999999999984
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=7.1e-05 Score=72.43 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=17.3
Q ss_pred CCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCC
Q 045598 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397 (536)
Q Consensus 363 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 397 (536)
++|++|++++|... ..|+.+. .+|++|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666554 2333322 46666666554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00016 Score=69.98 Aligned_cols=137 Identities=13% Similarity=0.164 Sum_probs=87.6
Q ss_pred cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCc-CCCCCCccccccchh
Q 045598 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN-LHGPIPSCFDNTTLH 313 (536)
Q Consensus 235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~ 313 (536)
+..+.++..|++++|.++ .+|. -.++|++|.+++|.-....|..+ .++|+.|++++|. +. ..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL---------- 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL---------- 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc----------
Confidence 345688999999999877 4452 23579999998865544666544 3589999999873 32 11
Q ss_pred hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCC-CCCCEEeCCCcc-CCC-CCcccccCCCCCC
Q 045598 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNL-TRIQTLNLSHNN-LTG-SIPSTFSNLKYVE 390 (536)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~ 390 (536)
++.|+.|+++++.... +..+ ++|+.|.+.+++ ... ..|.. -.++|+
T Consensus 111 ------------------------P~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk 159 (426)
T PRK15386 111 ------------------------PESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLK 159 (426)
T ss_pred ------------------------ccccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCccc
Confidence 3467778887665431 1222 367888875433 211 11111 126899
Q ss_pred EEeCCCCcccccCchhhhCCCCCCEEEccCCc
Q 045598 391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422 (536)
Q Consensus 391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 422 (536)
+|++++|... ..|..+. .+|+.|+++.|.
T Consensus 160 ~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 160 TLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 9999999866 4444332 589999998774
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.8e-05 Score=82.99 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=52.2
Q ss_pred CCCCEEEccCCc-CccccchhHhhCCCCCCEEEcccCccCccCCc-cccCCCCCCEEEccCCcCcccCCcCCCCCCccCe
Q 045598 70 KFLQFLDLSNNH-LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFS-RNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEG 147 (536)
Q Consensus 70 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 147 (536)
.+|++||+++.. +....|..+..-+|.|+.|.+++-.+...... ...++++|..||++++.++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666665542 22233444444566666666655444322211 123556666666666655533 44555566665
Q ss_pred eecccCcCCC-CCCcccCCCCCCCeEEccCCc
Q 045598 148 LYLNNNSLSG-KIPRWLGNLTRLQCIIMPNNH 178 (536)
Q Consensus 148 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~ 178 (536)
|.+.+=.+.. ..-..+.++++|+.||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 5554433321 111223455666666665543
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.58 E-value=2.5e-06 Score=80.28 Aligned_cols=276 Identities=19% Similarity=0.115 Sum_probs=157.8
Q ss_pred CCcCEEEccCCcCcccCC-hhHhhcCCCCcEEEccCCC-CcccCCcc-CCCCCCCCEEEccCC-cCccccchhHhhCCCC
Q 045598 21 KRLGMLDISNNNFRGHIP-VEIADVLPSLYAFNNSMNA-LDGSIPSS-FGNMKFLQFLDLSNN-HLTGEIPEHLAVGCVN 96 (536)
Q Consensus 21 ~~L~~L~ls~~~~~~~~p-~~~~~~l~~L~~L~l~~n~-~~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~ 96 (536)
..|+.|.++++.-.+.-+ ..+...+|+++.|.+.++. +++..... -..+++|++|++..| .+++..-+.+..++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 457888888876443322 3455568888888887764 33322222 245788888888884 4554444446678888
Q ss_pred CCEEEcccCcc-CccCC-ccccCCCCCCEEEccCCcCcccCCcCC----CCCCccCeeecccCcC-CCCCC-cccCCCCC
Q 045598 97 LRFLALSNNNL-QGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQSL----SKCSSLEGLYLNNNSL-SGKIP-RWLGNLTR 168 (536)
Q Consensus 97 L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~~-~~~~~-~~~~~l~~ 168 (536)
|++|+++.+.- ++... .-..+++.++.+.+.+|.-.+ -+++ ..+..+..+++..|.. ++... ..-..+.+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 99998887743 32111 122356667777666653211 1111 2334455566555532 22110 11134677
Q ss_pred CCeEEccCCcc-ccCCcccc-cCCCCCCEEEccCCcCccc-CCC--CCCCCCccEEEccCCCCCCcc-cccccCCCCCcc
Q 045598 169 LQCIIMPNNHL-EGPIPVEF-CQLDLLQILDISDNNISGS-LPS--CFHPLSIKQVHLSKNMLHGQL-KRGTFFNCSSLV 242 (536)
Q Consensus 169 L~~L~l~~n~~-~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~--~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~ 242 (536)
|+.+..+++.. ++....++ .+..+|+.+.+..++.-+. ... .-....|+.+++.++...... -...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 88888877643 22222222 3567888888888763211 111 114567788877776542111 112235778888
Q ss_pred EEEccCCcCC-Ccc----chhhhCCCCccEEEccccccc-ccccccccCCCCCCEEecCCCc
Q 045598 243 TLDLSYNRLN-GSI----SDWVDGLSQLSHLILGHNNLE-GEVPIQLCELNQLQLLDLSNNN 298 (536)
Q Consensus 243 ~L~L~~n~l~-~~~----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 298 (536)
.+.++.+... +.. ...-.++..++.+.+++++.. +.....+..+++|+.+++-+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 8888877542 221 112234677888888888765 3344556778888888887765
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.06 E-value=2.5e-05 Score=73.81 Aligned_cols=292 Identities=14% Similarity=0.063 Sum_probs=168.8
Q ss_pred EEecccccccc--CCCCcCCCCCcCEEEccCCc-CcccCChhHhhcCCCCcEEEccCC-CCcccCCc-cCCCCCCCCEEE
Q 045598 2 LSLVNDSLGGP--FRLPIHSHKRLGMLDISNNN-FRGHIPVEIADVLPSLYAFNNSMN-ALDGSIPS-SFGNMKFLQFLD 76 (536)
Q Consensus 2 L~L~~~~~~~~--~~~~~~~~~~L~~L~ls~~~-~~~~~p~~~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~L~~L~ 76 (536)
|+|.++.-.+. ......+++++++|.+.++. +++..-..+.+.+++|+++++..+ .++...-. --..+++|++|+
T Consensus 143 LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lN 222 (483)
T KOG4341|consen 143 LSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLN 222 (483)
T ss_pred ccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhh
Confidence 34455543332 22234688999999998875 555556677888999999999984 45543322 345789999999
Q ss_pred ccCCc-CccccchhHhhCCCCCCEEEcccCccCccCCccc----cCCCCCCEEEccCCcC-cccC-CcCCCCCCccCeee
Q 045598 77 LSNNH-LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN----FNLTNLKWLQLEGSRF-VGEI-PQSLSKCSSLEGLY 149 (536)
Q Consensus 77 L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~ 149 (536)
++.+. +++.--..++.++..++.+.+.+|.-. ..+.+ ..+..+..+++..+.. ++.. ...-..+..|+.++
T Consensus 223 lSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~ 300 (483)
T KOG4341|consen 223 LSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLC 300 (483)
T ss_pred hccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhc
Confidence 99984 544333455577778888777765321 11222 1334455566555532 2111 11123466778887
Q ss_pred cccCcC-CCCCCcc-cCCCCCCCeEEccCCc-cccCCcccc-cCCCCCCEEEccCCcCcccC---CCCCCCCCccEEEcc
Q 045598 150 LNNNSL-SGKIPRW-LGNLTRLQCIIMPNNH-LEGPIPVEF-CQLDLLQILDISDNNISGSL---PSCFHPLSIKQVHLS 222 (536)
Q Consensus 150 l~~n~~-~~~~~~~-~~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~---~~~~~~~~L~~L~l~ 222 (536)
.+++.- .+..-.. -.+.++|+.+-+..++ ++..-...+ .+.+.|+.+++.++...... .-....+.|+.+.++
T Consensus 301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 301 YSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred ccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 776543 2111111 2345778888887775 222111111 35567888877776543222 112256677888777
Q ss_pred CCCCCCccc----ccccCCCCCccEEEccCCcCC-CccchhhhCCCCccEEEccccccccc--ccccccCCCCCCEEecC
Q 045598 223 KNMLHGQLK----RGTFFNCSSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGE--VPIQLCELNQLQLLDLS 295 (536)
Q Consensus 223 ~n~~~~~~~----~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~ 295 (536)
.+....... ...-.++..|+.+.+++++.. +..-..+..+++|+.+++-+++-... +...-..+|++++.-+.
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 665322211 111235678899999998764 33345566788999999988864322 22223456776666543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00066 Score=60.60 Aligned_cols=105 Identities=23% Similarity=0.192 Sum_probs=65.0
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC--cCccccchhHhhCCCCCCEEEcccCccCc-cCCccccCCCCC
Q 045598 45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN--HLTGEIPEHLAVGCVNLRFLALSNNNLQG-HMFSRNFNLTNL 121 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 121 (536)
+..|+.+++.+..++. -..|-.+++|+.|.++.| .+.+.++.-. ..+++|++|++++|++.. .....+..+++|
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcch
Confidence 3456666666555543 233566778888888888 5554444433 456888888888888763 122344567778
Q ss_pred CEEEccCCcCcccCC---cCCCCCCccCeeeccc
Q 045598 122 KWLQLEGSRFVGEIP---QSLSKCSSLEGLYLNN 152 (536)
Q Consensus 122 ~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~ 152 (536)
..|++.+|..+.... ..|.-+++|++|+-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 888888876553211 2456677777776543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0014 Score=58.64 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=44.3
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCc--cCCCCCcccccCCCCCCEEeCCCCccccc-CchhhhCCCCCCEE
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN--NLTGSIPSTFSNLKYVESLDLSNNKLNGK-IPHQLVELKTLEVF 416 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 416 (536)
.|+.|.+.+..++. -..|..+++|++|.++.| ++.+-++-....+|+|+++++++|+|..+ --..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 44444455544441 123445666666666666 44444444445556666666666666521 01123345556666
Q ss_pred EccCCcCcc
Q 045598 417 SVAYNNLSG 425 (536)
Q Consensus 417 ~l~~N~l~~ 425 (536)
++.+|.-+.
T Consensus 122 dl~n~~~~~ 130 (260)
T KOG2739|consen 122 DLFNCSVTN 130 (260)
T ss_pred hcccCCccc
Confidence 666665554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00019 Score=64.27 Aligned_cols=98 Identities=26% Similarity=0.279 Sum_probs=43.8
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccC-CccccCCCCCCEEE
Q 045598 47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM-FSRNFNLTNLKWLQ 125 (536)
Q Consensus 47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 125 (536)
+.+.|++-++.++++ ....+|+.|++|.|+-|+|+ .+.. +..|++|++|+|..|.|.... ..-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344444444444432 12344555555555555554 2221 234555555555555544321 12234555666666
Q ss_pred ccCCcCcccCC-----cCCCCCCccCeee
Q 045598 126 LEGSRFVGEIP-----QSLSKCSSLEGLY 149 (536)
Q Consensus 126 L~~n~i~~~~~-----~~~~~l~~L~~L~ 149 (536)
|..|.-.+..+ ..+..+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 65554332222 1234455555553
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.34 E-value=0.00062 Score=70.13 Aligned_cols=174 Identities=22% Similarity=0.140 Sum_probs=99.0
Q ss_pred CCCCcCEEEccCCc-CcccCChhHhhcCCCCcEEEccCC-CCccc----CCccCCCCCCCCEEEccCCc-CccccchhHh
Q 045598 19 SHKRLGMLDISNNN-FRGHIPVEIADVLPSLYAFNNSMN-ALDGS----IPSSFGNMKFLQFLDLSNNH-LTGEIPEHLA 91 (536)
Q Consensus 19 ~~~~L~~L~ls~~~-~~~~~p~~~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 91 (536)
.++.|+.|.+.++. +...--..+...++.|+.|+++++ ..... .......+++|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46888888888764 332112345555789999999873 11111 12244567899999999887 6644444444
Q ss_pred hCCCCCCEEEcccCc-cCccCCcc-ccCCCCCCEEEccCCcCccc--CCcCCCCCCccCeeecccCcCCCCCCcccCCCC
Q 045598 92 VGCVNLRFLALSNNN-LQGHMFSR-NFNLTNLKWLQLEGSRFVGE--IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 167 (536)
Q Consensus 92 ~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 167 (536)
..+++|++|.+.++. ++...... ...+++|++|+++.+..... ......++++++.+.+....- ++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 558899999987776 55433332 34678899999998764311 111233455666554432211 23
Q ss_pred CCCeEEccCCcc---ccCCcccccCCCCCCEEEccCCc
Q 045598 168 RLQCIIMPNNHL---EGPIPVEFCQLDLLQILDISDNN 202 (536)
Q Consensus 168 ~L~~L~l~~n~~---~~~~~~~~~~l~~L~~L~l~~n~ 202 (536)
.++.+.+..... ..........+++++.+.+..+.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 333333332221 11222334566667776666655
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00024 Score=63.69 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=40.5
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC-chhhhCCCCCCEEE
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI-PHQLVELKTLEVFS 417 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 417 (536)
.+.+.|++.+|.+.++ .....++.|+.|.|+-|.|+.. ..+..|+.|++|+|+.|.|.++. -..+.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555421 2233455555555555555533 23455555555555555554321 12334555555555
Q ss_pred ccCCcCcc
Q 045598 418 VAYNNLSG 425 (536)
Q Consensus 418 l~~N~l~~ 425 (536)
+..|+-.+
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 55555443
No 70
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.93 E-value=0.0035 Score=73.39 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=36.8
Q ss_pred ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-------------------CCCCCCCCCcccCCCCcCcc
Q 045598 418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-------------------ICRSPATMSEASIGNERDDN 474 (536)
Q Consensus 418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~-------------------~C~~~~~~~~~~~~~~~~~~ 474 (536)
|++|+|+...+..+..+.+++.++|.+|||.|+|.+. .|..|..++++++..+..++
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d 77 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLD 77 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCccc
Confidence 4445555444444444555555556666777777653 49999999999888776544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.67 E-value=0.0018 Score=66.72 Aligned_cols=244 Identities=20% Similarity=0.103 Sum_probs=131.2
Q ss_pred cCChhHhhcCCCCcEEEccCCCCccc--CCccCCCCCCCCEEEccCC-cCccccc---hhHhhCCCCCCEEEcccCc-cC
Q 045598 36 HIPVEIADVLPSLYAFNNSMNALDGS--IPSSFGNMKFLQFLDLSNN-HLTGEIP---EHLAVGCVNLRFLALSNNN-LQ 108 (536)
Q Consensus 36 ~~p~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~~l~~L~~L~L~~n~-l~ 108 (536)
.+...+...++.|+.+.+.++.-... .-.....+++|+.|+++++ ......+ ......+.+|+.|+++.+. ++
T Consensus 178 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 178 KILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 33344455478899998887643222 2345677899999999873 2111222 2344677899999999988 55
Q ss_pred ccCCcccc-CCCCCCEEEccCCc-CcccC-CcCCCCCCccCeeecccCcCC-CC-CCcccCCCCCCCeEEccCCccccCC
Q 045598 109 GHMFSRNF-NLTNLKWLQLEGSR-FVGEI-PQSLSKCSSLEGLYLNNNSLS-GK-IPRWLGNLTRLQCIIMPNNHLEGPI 183 (536)
Q Consensus 109 ~~~~~~~~-~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~~~-~~-~~~~~~~l~~L~~L~l~~n~~~~~~ 183 (536)
......+. .+++|++|.+.++. +++.. ......+++|++|+++++... +. ......++++++.+.+.....
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---- 333 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---- 333 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----
Confidence 54444443 37899999987776 44221 123466788999999987653 11 122234466666655433221
Q ss_pred cccccCCCCCCEEEccCCcCcc--cC--CCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598 184 PVEFCQLDLLQILDISDNNISG--SL--PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259 (536)
Q Consensus 184 ~~~~~~l~~L~~L~l~~n~~~~--~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 259 (536)
+..++.+.+....... .. ...-.++.++.+.+..+..........+.++++|. ..+.. ..
T Consensus 334 ------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~ 397 (482)
T KOG1947|consen 334 ------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RL 397 (482)
T ss_pred ------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------Hh
Confidence 2333343333221110 00 01114556666666665532211122345555552 21111 11
Q ss_pred hCCCCccEEEccccccccc-ccccccC-CCCCCEEecCCCcC
Q 045598 260 DGLSQLSHLILGHNNLEGE-VPIQLCE-LNQLQLLDLSNNNL 299 (536)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~~ 299 (536)
.....++.|+++.+..... ....... +.+++.+++.++..
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 1122278888888765421 1111222 56777787777654
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.012 Score=31.11 Aligned_cols=10 Identities=70% Similarity=0.773 Sum_probs=3.7
Q ss_pred EEeCCCccCC
Q 045598 367 TLNLSHNNLT 376 (536)
Q Consensus 367 ~L~L~~n~l~ 376 (536)
+|+|++|+++
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.80 E-value=0.012 Score=31.09 Aligned_cols=20 Identities=45% Similarity=0.654 Sum_probs=11.1
Q ss_pred CCCEEeCCCCcccccCchhhh
Q 045598 388 YVESLDLSNNKLNGKIPHQLV 408 (536)
Q Consensus 388 ~L~~L~L~~n~l~~~~~~~~~ 408 (536)
+|++|||++|+++ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 4444443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.0037 Score=53.64 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=58.5
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-CCCccccc-CCCCCCEEeCCCC-cccccCchhhhCCCCCCEE
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-GSIPSTFS-NLKYVESLDLSNN-KLNGKIPHQLVELKTLEVF 416 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 416 (536)
.++.+|-++..++.+.-+.+..+++++.|.+.+|.-- +.--+.+. ..++|+.|++++| +||+..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4788888998888877778888889999988888532 22112222 2478999999988 6776666677777888877
Q ss_pred EccC
Q 045598 417 SVAY 420 (536)
Q Consensus 417 ~l~~ 420 (536)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7665
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.39 E-value=0.057 Score=26.39 Aligned_cols=13 Identities=69% Similarity=0.764 Sum_probs=4.8
Q ss_pred CCCEEEccCCcCc
Q 045598 71 FLQFLDLSNNHLT 83 (536)
Q Consensus 71 ~L~~L~L~~n~l~ 83 (536)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555444
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.33 E-value=0.14 Score=28.23 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=15.2
Q ss_pred CCCCCEEEccCCcCccccchhHh
Q 045598 69 MKFLQFLDLSNNHLTGEIPEHLA 91 (536)
Q Consensus 69 l~~L~~L~L~~n~l~~~~~~~~~ 91 (536)
+++|++|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 7776654
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.33 E-value=0.14 Score=28.23 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=15.2
Q ss_pred CCCCCEEEccCCcCccccchhHh
Q 045598 69 MKFLQFLDLSNNHLTGEIPEHLA 91 (536)
Q Consensus 69 l~~L~~L~L~~n~l~~~~~~~~~ 91 (536)
+++|++|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 7776654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.71 E-value=0.16 Score=27.93 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCcccc
Q 045598 387 KYVESLDLSNNKLNG 401 (536)
Q Consensus 387 ~~L~~L~L~~n~l~~ 401 (536)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.71 E-value=0.16 Score=27.93 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCcccc
Q 045598 387 KYVESLDLSNNKLNG 401 (536)
Q Consensus 387 ~~L~~L~L~~n~l~~ 401 (536)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.12 E-value=0.0021 Score=64.81 Aligned_cols=182 Identities=25% Similarity=0.205 Sum_probs=110.9
Q ss_pred cCEEEccCCcCcccCChhHhhc---CCCCcEEEccCCCCcccCC----ccCCCC-CCCCEEEccCCcCcccc----chhH
Q 045598 23 LGMLDISNNNFRGHIPVEIADV---LPSLYAFNNSMNALDGSIP----SSFGNM-KFLQFLDLSNNHLTGEI----PEHL 90 (536)
Q Consensus 23 L~~L~ls~~~~~~~~p~~~~~~---l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~----~~~~ 90 (536)
+..|.|.+|.+.......+... .+.|..|++++|.+.+... ..+... ..+++|++..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6777777777765544444433 3567777888877764211 223332 55666777777766332 2333
Q ss_pred hhCCCCCCEEEcccCccCcc----CCcc----ccCCCCCCEEEccCCcCcccC----CcCCCCCCc-cCeeecccCcCCC
Q 045598 91 AVGCVNLRFLALSNNNLQGH----MFSR----NFNLTNLKWLQLEGSRFVGEI----PQSLSKCSS-LEGLYLNNNSLSG 157 (536)
Q Consensus 91 ~~~l~~L~~L~L~~n~l~~~----~~~~----~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~-L~~L~l~~n~~~~ 157 (536)
.....++.++++.|.+... ...+ +....++++|++.++.++... ..++...++ +..+++..|.+.+
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 2366777778877766421 1122 234677888888888765321 123444455 6678888887764
Q ss_pred CC----CcccCCC-CCCCeEEccCCccccCCc----ccccCCCCCCEEEccCCcCcc
Q 045598 158 KI----PRWLGNL-TRLQCIIMPNNHLEGPIP----VEFCQLDLLQILDISDNNISG 205 (536)
Q Consensus 158 ~~----~~~~~~l-~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~ 205 (536)
.. ...+..+ ..++++++..|.+..... ..+..++.++.+.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 31 1234444 677889999998875433 334566788999999888764
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.84 E-value=0.0062 Score=53.43 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=46.7
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 418 (536)
...+.||++.|.+.. ...-|+-++.|..|+++.|.+. ..|..+.....+..+++.+|..+ ..|..+...+.++.+++
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 345556666655432 2223444555566666666665 45555665556666666666555 55555666666666666
Q ss_pred cCCcCc
Q 045598 419 AYNNLS 424 (536)
Q Consensus 419 ~~N~l~ 424 (536)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666544
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.47 E-value=0.0039 Score=62.90 Aligned_cols=86 Identities=28% Similarity=0.324 Sum_probs=40.3
Q ss_pred cccceEEccCCcCcCC----CcccccCCCC-CCEEeCCCccCCCC----CcccccCC-CCCCEEeCCCCcccccCch---
Q 045598 339 SLLSGLDLSCNKLIGP----IPLQIGNLTR-IQTLNLSHNNLTGS----IPSTFSNL-KYVESLDLSNNKLNGKIPH--- 405 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~--- 405 (536)
.++++|++++|.++.. ...++...++ +.+|++..|.+.+. ....+..+ ..++.++++.|.++.....
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 3455555555554421 1122333333 45556665555532 12223333 4556666666665543322
Q ss_pred -hhhCCCCCCEEEccCCcCc
Q 045598 406 -QLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 406 -~~~~l~~L~~L~l~~N~l~ 424 (536)
.+...+.++.+.+.+|++.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 2334455666666666555
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.28 E-value=0.036 Score=47.83 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=14.3
Q ss_pred CcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 48 LYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 48 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
++.+|-++..|.....+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444444333334444444444444444
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.12 E-value=0.1 Score=28.11 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=6.8
Q ss_pred CCCCEEeCCCCcccc
Q 045598 387 KYVESLDLSNNKLNG 401 (536)
Q Consensus 387 ~~L~~L~L~~n~l~~ 401 (536)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.41 E-value=0.018 Score=50.62 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=27.7
Q ss_pred CCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcC
Q 045598 94 CVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL 155 (536)
Q Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 155 (536)
++.+..|+++.|.+. ..+..+.....++.+++..|..+ ..|..+...++++.+++.++.+
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 334444444444443 22333333444444444444433 4455555555555555555544
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.07 E-value=1.7 Score=23.96 Aligned_cols=14 Identities=50% Similarity=0.726 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCccc
Q 045598 387 KYVESLDLSNNKLN 400 (536)
Q Consensus 387 ~~L~~L~L~~n~l~ 400 (536)
++|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666654
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.75 E-value=1.9 Score=24.21 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=11.7
Q ss_pred CCcCEEEccCCcCcccCChhH
Q 045598 21 KRLGMLDISNNNFRGHIPVEI 41 (536)
Q Consensus 21 ~~L~~L~ls~~~~~~~~p~~~ 41 (536)
++|++|+|++|.+....-..+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456667776666654333333
No 88
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=71.32 E-value=0.93 Score=29.75 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=8.3
Q ss_pred CcCCCCCCCC
Q 045598 445 NTFLCGLPLP 454 (536)
Q Consensus 445 n~~~c~~~l~ 454 (536)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 7999998764
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.30 E-value=3.4 Score=22.75 Aligned_cols=17 Identities=53% Similarity=0.755 Sum_probs=10.7
Q ss_pred CCCEEEccCCcCccccch
Q 045598 71 FLQFLDLSNNHLTGEIPE 88 (536)
Q Consensus 71 ~L~~L~L~~n~l~~~~~~ 88 (536)
+|+.|+.++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666666 5554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.13 E-value=2.9 Score=42.19 Aligned_cols=36 Identities=33% Similarity=0.316 Sum_probs=16.1
Q ss_pred CCCCCEEeCCCccCCCCC--cccccCCCCCCEEeCCCC
Q 045598 362 LTRIQTLNLSHNNLTGSI--PSTFSNLKYVESLDLSNN 397 (536)
Q Consensus 362 l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n 397 (536)
.+.+..++|++|++.... ...-+..|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555556666554220 011122245555555555
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.22 E-value=22 Score=35.48 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=9.2
Q ss_pred CCCEEEccCCcCcccCCC
Q 045598 192 LLQILDISDNNISGSLPS 209 (536)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~ 209 (536)
.+.+++++.|......+.
T Consensus 215 ~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cccccccccCCCCccchh
Confidence 355555555555544443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.83 E-value=33 Score=34.33 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=9.2
Q ss_pred CCCEEEccCCcCccccch
Q 045598 71 FLQFLDLSNNHLTGEIPE 88 (536)
Q Consensus 71 ~L~~L~L~~n~l~~~~~~ 88 (536)
.+.+++++.|...+.+|.
T Consensus 215 ~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cccccccccCCCCccchh
Confidence 345555555555444443
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=61.97 E-value=3.2 Score=33.96 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhhcchhhHH
Q 045598 491 IVIFATVIILYVNSYWRRR 509 (536)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~ 509 (536)
++++++++++++++|||.|
T Consensus 70 lLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHheeEEeecccC
Confidence 3334444444444555544
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.45 E-value=6.2 Score=39.93 Aligned_cols=62 Identities=29% Similarity=0.315 Sum_probs=37.9
Q ss_pred ccccceEEccCCcCcCCCc--ccccCCCCCCEEeCCCc--cCCCCCcccccCC--CCCCEEeCCCCcccc
Q 045598 338 LSLLSGLDLSCNKLIGPIP--LQIGNLTRIQTLNLSHN--NLTGSIPSTFSNL--KYVESLDLSNNKLNG 401 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l--~~L~~L~L~~n~l~~ 401 (536)
.+.+..+.+++|++..... ..-...|+|++|+|++| .+.. ...+..+ ..|++|.+.||.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 4567778888887653221 11233578888888888 3331 1223333 457788888888754
No 95
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=55.28 E-value=14 Score=34.94 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHhhhhhcchhh
Q 045598 484 TFTTSYVIVIFATVIILYVNSYWR 507 (536)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~ 507 (536)
+.+++.++++++++++.++.|++|
T Consensus 260 aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444433333
No 96
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=54.22 E-value=4.9 Score=38.42 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=0.4
Q ss_pred cccchhhhhhhhhHHHHHHHHHhh-hhhcchhhHHHH
Q 045598 476 IDMNSFFITFTTSYVIVIFATVII-LYVNSYWRRRWF 511 (536)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 511 (536)
-...++-|+++++.++|+.+++++ +|++-+++++.+
T Consensus 5 YQkrVLTITgIcvaLlVVGi~Cvv~aYCKTKKQRkkl 41 (404)
T PF02158_consen 5 YQKRVLTITGICVALLVVGIVCVVDAYCKTKKQRKKL 41 (404)
T ss_dssp S------------------------------------
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344567788888888888888888 999888776654
No 97
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=54.20 E-value=11 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHhhhhhcchhhHHHHH
Q 045598 484 TFTTSYVIVIFATVIILYVNSYWRRRWFY 512 (536)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (536)
..++++++++++.++.+++.+|.|++...
T Consensus 104 ~~il~il~~i~is~~~~~~yr~~r~~~~~ 132 (139)
T PHA03099 104 PGIVLVLVGIIITCCLLSVYRFTRRTKLP 132 (139)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeecccCc
Confidence 34455555555555666666666666543
No 98
>PF15050 SCIMP: SCIMP protein
Probab=51.98 E-value=16 Score=28.50 Aligned_cols=29 Identities=28% Similarity=0.610 Sum_probs=15.6
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhcchhhHH
Q 045598 481 FFITFTTSYVIVIFATVIILYVNSYWRRR 509 (536)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (536)
+++.++++.+++-+++..++|+..+|+.+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444455566665666554
No 99
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.82 E-value=14 Score=29.52 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=3.4
Q ss_pred hhhhcchhhHH
Q 045598 499 ILYVNSYWRRR 509 (536)
Q Consensus 499 ~~~~~~~~~~~ 509 (536)
++|+.+|.|+|
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 33433333333
No 100
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=49.57 E-value=7 Score=34.22 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=18.0
Q ss_pred chhhhhhhhhHHHHHHHHHhhhhhcchhhH
Q 045598 479 NSFFITFTTSYVIVIFATVIILYVNSYWRR 508 (536)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (536)
..++++++.++++|++++++++++++|++.
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CRq~ 66 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCRQS 66 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHhhc
Confidence 345566666666666666666666545533
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.29 E-value=15 Score=45.08 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.9
Q ss_pred eCCCccCCCCCcccccCCCCCCEEeCCCCcccc
Q 045598 369 NLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG 401 (536)
Q Consensus 369 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 401 (536)
||++|+|+.+.+..|..+++|++|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899998777888889999999999998764
No 102
>COG4323 Predicted membrane protein [Function unknown]
Probab=43.53 E-value=60 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=18.5
Q ss_pred HHhhceeEEEEEEeceecccccC
Q 045598 514 VEMWITSSYYFVVDNLIPTRFCH 536 (536)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~ 536 (536)
..-.++|+=+++-++-+|++|-|
T Consensus 61 ~GYgFAWvGHFvFEKNRPATFky 83 (105)
T COG4323 61 IGYGFAWVGHFVFEKNRPATFKY 83 (105)
T ss_pred hcccceeeeeeeeecCCCccccc
Confidence 34567899999999999998854
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.13 E-value=19 Score=19.53 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=5.9
Q ss_pred CCCCEEeCCCC
Q 045598 387 KYVESLDLSNN 397 (536)
Q Consensus 387 ~~L~~L~L~~n 397 (536)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 104
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=35.47 E-value=26 Score=26.11 Aligned_cols=28 Identities=0% Similarity=0.167 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhcchhh
Q 045598 480 SFFITFTTSYVIVIFATVIILYVNSYWR 507 (536)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (536)
+.+++.+.++++++++++.+.+++.+|+
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 3455555555555555555555555555
No 105
>PRK01844 hypothetical protein; Provisional
Probab=33.20 E-value=64 Score=22.90 Aligned_cols=11 Identities=0% Similarity=0.386 Sum_probs=4.3
Q ss_pred hhhcchhhHHH
Q 045598 500 LYVNSYWRRRW 510 (536)
Q Consensus 500 ~~~~~~~~~~~ 510 (536)
+++.+++-.+|
T Consensus 22 ff~ark~~~k~ 32 (72)
T PRK01844 22 FFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHH
Confidence 33333443443
No 106
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=32.17 E-value=50 Score=20.31 Aligned_cols=13 Identities=15% Similarity=0.260 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhhh
Q 045598 489 YVIVIFATVIILY 501 (536)
Q Consensus 489 ~~~~~~~~~~~~~ 501 (536)
+++++.+++.+.|
T Consensus 18 glv~i~iva~~iY 30 (43)
T PF08114_consen 18 GLVGIGIVALFIY 30 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333433
No 107
>PTZ00046 rifin; Provisional
Probab=31.01 E-value=28 Score=33.51 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=4.1
Q ss_pred hhhhcchhhH
Q 045598 499 ILYVNSYWRR 508 (536)
Q Consensus 499 ~~~~~~~~~~ 508 (536)
+.|...|+||
T Consensus 333 IIYLILRYRR 342 (358)
T PTZ00046 333 IIYLILRYRR 342 (358)
T ss_pred HHHHHHHhhh
Confidence 3344344443
No 108
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.69 E-value=30 Score=33.25 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=4.6
Q ss_pred hhhhcchhhHH
Q 045598 499 ILYVNSYWRRR 509 (536)
Q Consensus 499 ~~~~~~~~~~~ 509 (536)
+.|...|+||+
T Consensus 328 IIYLILRYRRK 338 (353)
T TIGR01477 328 IIYLILRYRRK 338 (353)
T ss_pred HHHHHHHhhhc
Confidence 34444444443
No 109
>PTZ00370 STEVOR; Provisional
Probab=30.42 E-value=38 Score=31.32 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=3.6
Q ss_pred HHHHhhhhh
Q 045598 494 FATVIILYV 502 (536)
Q Consensus 494 ~~~~~~~~~ 502 (536)
+|+++++|+
T Consensus 268 ~vvliilYi 276 (296)
T PTZ00370 268 AVVLIILYI 276 (296)
T ss_pred HHHHHHHHH
Confidence 333334444
No 110
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=28.87 E-value=28 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=14.2
Q ss_pred hhhhhhHHHHHHHHHhhhhhcchh
Q 045598 483 ITFTTSYVIVIFATVIILYVNSYW 506 (536)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~ 506 (536)
+.+++..++++.+++.++|+.++.
T Consensus 9 ~l~g~llligftivvl~vyfgrk~ 32 (126)
T PF13120_consen 9 LLIGTLLLIGFTIVVLLVYFGRKF 32 (126)
T ss_pred HHHHHHHHHHHHHHhhhheeccee
Confidence 344555566666666777775443
No 111
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.65 E-value=38 Score=31.31 Aligned_cols=10 Identities=40% Similarity=0.846 Sum_probs=4.0
Q ss_pred HHHHHhhhhh
Q 045598 493 IFATVIILYV 502 (536)
Q Consensus 493 ~~~~~~~~~~ 502 (536)
+.|+++++|+
T Consensus 271 l~vvliiLYi 280 (295)
T TIGR01478 271 LTVVLIILYI 280 (295)
T ss_pred HHHHHHHHHH
Confidence 3333334444
No 112
>PRK00523 hypothetical protein; Provisional
Probab=26.82 E-value=98 Score=22.01 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=3.9
Q ss_pred hhcchhhHHH
Q 045598 501 YVNSYWRRRW 510 (536)
Q Consensus 501 ~~~~~~~~~~ 510 (536)
|+.+++-.+|
T Consensus 24 fiark~~~k~ 33 (72)
T PRK00523 24 FVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHH
Confidence 3333443443
No 113
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=59 Score=28.71 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=3.8
Q ss_pred hhhhhcchh
Q 045598 498 IILYVNSYW 506 (536)
Q Consensus 498 ~~~~~~~~~ 506 (536)
+++++++||
T Consensus 204 ~~yl~~~wl 212 (213)
T KOG3251|consen 204 IMYLFYRWL 212 (213)
T ss_pred HHHHHHHHh
Confidence 334444444
No 114
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.53 E-value=1.1e+02 Score=29.07 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=19.1
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhcchhhHHH
Q 045598 481 FFITFTTSYVIVIFATVIILYVNSYWRRRW 510 (536)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (536)
+..+++.++++++++|+++++.++-||.|.
T Consensus 254 ~~t~I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 254 LTTAIIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666777766677665
No 115
>PHA02650 hypothetical protein; Provisional
Probab=21.33 E-value=92 Score=22.45 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHhhhhhc
Q 045598 486 TTSYVIVIFATVIILYVN 503 (536)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~ 503 (536)
++.+++++++++.+.|.+
T Consensus 54 i~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 54 FLIFSLIIVALFSFFVFK 71 (81)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 116
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.15 E-value=21 Score=29.60 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.2
Q ss_pred hhhhhh
Q 045598 483 ITFTTS 488 (536)
Q Consensus 483 ~~~~~~ 488 (536)
|+++++
T Consensus 52 IGvVVG 57 (154)
T PF04478_consen 52 IGVVVG 57 (154)
T ss_pred EEEEec
Confidence 333333
No 117
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.35 E-value=1.5e+02 Score=18.56 Aligned_cols=10 Identities=30% Similarity=0.165 Sum_probs=5.8
Q ss_pred ccccceEEcc
Q 045598 338 LSLLSGLDLS 347 (536)
Q Consensus 338 ~~~L~~L~l~ 347 (536)
++++++|.+.
T Consensus 11 P~~l~~L~~g 20 (44)
T PF05725_consen 11 PSSLKSLIFG 20 (44)
T ss_pred CCCCeEEEEC
Confidence 4556666663
Done!