Query 045598
Match_columns 536
No_of_seqs 409 out of 4417
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.9E-55 1.3E-59 472.2 34.6 465 2-470 252-762 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-52 2.5E-56 451.2 35.4 467 1-475 28-607 (844)
3 3t6q_A CD180 antigen; protein- 100.0 2E-51 6.9E-56 433.6 32.8 461 1-471 37-602 (606)
4 3rgz_A Protein brassinosteroid 100.0 3.6E-51 1.2E-55 441.3 29.8 441 1-452 204-721 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-48 4.5E-53 417.6 38.5 466 2-476 78-671 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-49 1.3E-53 416.2 31.5 456 1-473 36-602 (606)
7 2z63_A TOLL-like receptor 4, v 100.0 2.3E-47 7.9E-52 399.9 31.5 419 1-454 32-537 (570)
8 4eco_A Uncharacterized protein 100.0 7.2E-47 2.4E-51 398.6 21.8 418 1-450 85-602 (636)
9 3t6q_A CD180 antigen; protein- 100.0 9.7E-45 3.3E-49 382.6 37.7 434 2-448 17-513 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-44 5.5E-49 386.0 38.0 446 1-448 29-597 (680)
11 4ecn_A Leucine-rich repeat pro 100.0 1.9E-45 6.6E-50 393.8 29.4 409 1-448 327-864 (876)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-44 4.4E-49 381.7 32.6 428 2-448 16-534 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-44 5.4E-49 393.5 31.2 415 1-428 52-564 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-44 1.2E-48 373.8 31.6 430 3-452 11-514 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-45 1.6E-49 377.8 22.2 428 1-453 4-486 (520)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-43 4.2E-48 376.7 30.8 437 21-471 52-622 (635)
17 3v47_A TOLL-like receptor 5B a 100.0 5.5E-43 1.9E-47 356.2 28.4 381 23-452 12-412 (455)
18 4ecn_A Leucine-rich repeat pro 100.0 8.7E-43 3E-47 373.3 28.8 396 21-449 323-841 (876)
19 2z63_A TOLL-like receptor 4, v 100.0 1.3E-42 4.6E-47 363.8 29.7 393 1-430 56-537 (570)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-42 7.2E-47 360.8 25.2 409 1-453 35-515 (562)
21 4eco_A Uncharacterized protein 100.0 2.1E-42 7.3E-47 364.5 25.0 392 6-452 192-630 (636)
22 2z81_A CD282 antigen, TOLL-lik 100.0 6.8E-42 2.3E-46 356.6 25.1 411 1-428 30-514 (549)
23 3v47_A TOLL-like receptor 5B a 100.0 2.8E-40 9.7E-45 336.2 29.3 379 2-429 15-413 (455)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-40 4E-45 344.8 22.2 384 1-428 25-485 (520)
25 2id5_A Lingo-1, leucine rich r 100.0 2.5E-39 8.6E-44 331.0 25.7 323 74-452 15-337 (477)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-38 9.1E-43 329.8 27.3 385 1-428 56-514 (562)
27 2id5_A Lingo-1, leucine rich r 100.0 3.8E-38 1.3E-42 322.2 25.6 321 23-400 13-333 (477)
28 1o6v_A Internalin A; bacterial 100.0 9.4E-37 3.2E-41 310.5 32.7 346 19-425 44-389 (466)
29 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-36 9.9E-41 320.0 36.5 423 13-450 20-557 (635)
30 1o6v_A Internalin A; bacterial 100.0 3.9E-36 1.3E-40 305.9 33.3 345 45-449 45-389 (466)
31 1jl5_A Outer protein YOPM; leu 100.0 1.3E-36 4.3E-41 306.7 26.7 368 1-425 15-410 (454)
32 3o6n_A APL1; leucine-rich repe 100.0 5.2E-36 1.8E-40 298.1 27.1 334 69-451 44-377 (390)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-35 5.2E-40 299.1 25.8 357 10-431 31-394 (457)
34 1jl5_A Outer protein YOPM; leu 100.0 6.3E-35 2.2E-39 294.3 27.3 373 19-449 9-410 (454)
35 3oja_B Anopheles plasmodium-re 100.0 7.4E-35 2.5E-39 305.4 27.0 334 69-451 50-383 (597)
36 3o6n_A APL1; leucine-rich repe 100.0 4.9E-34 1.7E-38 283.8 30.0 311 20-402 44-354 (390)
37 4fmz_A Internalin; leucine ric 100.0 1.2E-33 4E-38 276.7 29.9 304 45-424 43-346 (347)
38 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-33 4.9E-38 284.7 28.0 353 33-451 30-390 (457)
39 4fmz_A Internalin; leucine ric 100.0 6.1E-33 2.1E-37 271.6 29.6 307 65-447 39-345 (347)
40 3oja_B Anopheles plasmodium-re 100.0 4.9E-33 1.7E-37 291.6 29.8 311 20-402 50-360 (597)
41 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-34 1.5E-38 274.6 19.1 260 143-457 50-313 (313)
42 1xku_A Decorin; proteoglycan, 100.0 1.6E-31 5.3E-36 259.5 28.7 292 70-422 31-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 8E-32 2.7E-36 261.7 26.2 290 71-422 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-35 6.1E-40 301.4 -2.0 363 20-425 2-412 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-31 6.5E-36 259.0 26.6 252 22-308 34-285 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.9E-31 1E-35 257.5 26.3 295 22-398 32-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-34 3.8E-39 295.5 -5.9 361 45-449 2-412 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-31 4.4E-36 257.4 15.5 249 120-423 51-303 (313)
49 3zyj_A Leucine-rich repeat-con 100.0 2.5E-30 8.6E-35 261.1 23.6 134 338-473 184-335 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 3.9E-30 1.3E-34 260.6 24.2 209 235-473 119-346 (452)
51 2z66_A Variable lymphocyte rec 100.0 3.5E-30 1.2E-34 247.2 18.0 247 123-425 11-262 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.7E-29 5.7E-34 247.5 18.1 210 67-304 28-239 (353)
53 1ozn_A Reticulon 4 receptor; N 100.0 6.2E-29 2.1E-33 235.9 18.2 250 170-474 14-280 (285)
54 2z80_A TOLL-like receptor 2, v 100.0 8.7E-29 3E-33 242.4 19.3 280 20-304 30-318 (353)
55 2z66_A Variable lymphocyte rec 100.0 2E-28 7E-33 234.9 17.8 279 97-430 9-293 (306)
56 3zyj_A Leucine-rich repeat-con 100.0 3.9E-27 1.3E-31 237.7 24.1 248 22-300 44-292 (440)
57 1ozn_A Reticulon 4 receptor; N 100.0 8.7E-28 3E-32 228.0 18.0 225 24-277 14-239 (285)
58 3ogk_B Coronatine-insensitive 100.0 2.4E-30 8.1E-35 272.1 0.0 382 19-426 110-528 (592)
59 3zyi_A Leucine-rich repeat-con 100.0 4.5E-27 1.5E-31 238.1 23.7 248 22-300 55-303 (452)
60 3ogk_B Coronatine-insensitive 99.9 2.5E-30 8.5E-35 271.9 -5.7 404 17-448 69-526 (592)
61 4fcg_A Uncharacterized protein 99.9 1.1E-26 3.8E-31 224.3 20.1 236 117-424 79-314 (328)
62 4fcg_A Uncharacterized protein 99.9 1.3E-26 4.3E-31 223.9 20.1 186 93-307 79-273 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-28 8E-33 235.3 6.6 239 139-419 30-270 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-25 3.9E-30 233.5 26.4 94 47-156 41-134 (622)
65 3g06_A SSPH2 (leucine-rich rep 99.9 4E-25 1.4E-29 229.4 28.4 113 72-204 42-154 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 3.7E-28 1.3E-32 234.0 4.8 274 145-459 12-286 (317)
67 3oja_A Leucine-rich immune mol 99.9 2.3E-27 7.9E-32 241.4 9.9 245 143-453 34-287 (487)
68 2o6q_A Variable lymphocyte rec 99.9 3.5E-25 1.2E-29 208.1 22.2 186 239-452 37-222 (270)
69 1wwl_A Monocyte differentiatio 99.9 1.2E-27 4.2E-32 229.8 5.1 249 19-301 41-310 (312)
70 1wwl_A Monocyte differentiatio 99.9 2.8E-27 9.6E-32 227.2 6.4 209 66-300 39-266 (312)
71 2z62_A TOLL-like receptor 4, v 99.9 2.8E-25 9.5E-30 209.6 19.3 208 216-453 30-242 (276)
72 2p1m_B Transport inhibitor res 99.9 6.3E-29 2.1E-33 261.3 -6.6 251 17-270 62-345 (594)
73 1p9a_G Platelet glycoprotein I 99.9 7.8E-25 2.7E-29 207.4 21.4 183 239-453 31-213 (290)
74 3oja_A Leucine-rich immune mol 99.9 2.9E-26 9.9E-31 233.3 10.6 234 96-419 35-270 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 2.3E-24 8E-29 203.3 20.9 223 24-252 10-237 (276)
76 2p1m_B Transport inhibitor res 99.9 4.1E-28 1.4E-32 255.1 -7.5 380 18-425 102-520 (594)
77 2o6q_A Variable lymphocyte rec 99.9 1.8E-23 6.2E-28 196.4 22.0 179 21-204 16-194 (270)
78 3rfs_A Internalin B, repeat mo 99.9 3.1E-24 1.1E-28 201.7 13.0 225 145-434 21-245 (272)
79 1p9a_G Platelet glycoprotein I 99.9 7.5E-23 2.6E-27 193.7 19.8 185 16-208 5-189 (290)
80 3m19_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 188.7 18.7 180 215-426 15-194 (251)
81 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.7E-27 189.9 19.5 181 213-426 40-220 (272)
82 3m19_A Variable lymphocyte rec 99.9 2.4E-22 8.4E-27 186.4 19.0 180 240-450 15-194 (251)
83 2v9t_B SLIT homolog 2 protein 99.9 1.2E-22 4E-27 184.2 12.4 136 340-475 57-208 (220)
84 2xwt_C Thyrotropin receptor; s 99.9 2.8E-22 9.6E-27 184.7 15.0 139 33-179 23-168 (239)
85 3goz_A Leucine-rich repeat-con 99.9 1.4E-23 4.8E-28 205.9 4.8 182 100-301 3-210 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 8.2E-22 2.8E-26 181.5 15.9 202 11-222 24-234 (239)
87 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.4E-28 206.2 3.7 212 51-303 3-241 (362)
88 4glp_A Monocyte differentiatio 99.9 5.9E-22 2E-26 190.0 14.0 208 119-400 91-307 (310)
89 2ast_B S-phase kinase-associat 99.9 3.3E-23 1.1E-27 201.5 4.7 90 339-431 222-313 (336)
90 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.9E-28 207.9 0.9 166 235-428 118-320 (386)
91 4ay9_X Follicle-stimulating ho 99.9 8.6E-21 2.9E-25 185.0 19.7 243 24-297 12-256 (350)
92 2v70_A SLIT-2, SLIT homolog 2 99.9 8.5E-22 2.9E-26 178.5 11.7 192 242-474 14-208 (220)
93 2ca6_A RAN GTPase-activating p 99.9 4.7E-23 1.6E-27 204.3 2.5 247 36-303 23-319 (386)
94 1h6u_A Internalin H; cell adhe 99.9 7.2E-21 2.5E-25 181.9 17.6 150 236-425 82-231 (308)
95 4glp_A Monocyte differentiatio 99.9 1.8E-21 6.1E-26 186.7 12.6 203 20-227 90-307 (310)
96 2ast_B S-phase kinase-associat 99.9 3.3E-22 1.1E-26 194.4 7.5 246 169-450 49-308 (336)
97 1h6u_A Internalin H; cell adhe 99.9 2.8E-20 9.7E-25 177.8 20.3 190 46-276 41-230 (308)
98 2xot_A Amphoterin-induced prot 99.8 5.8E-21 2E-25 187.0 12.3 181 242-453 21-207 (361)
99 4ay9_X Follicle-stimulating ho 99.8 6E-20 2E-24 179.1 18.6 200 2-207 14-218 (350)
100 3e6j_A Variable lymphocyte rec 99.8 1.7E-19 5.9E-24 164.4 16.1 156 240-427 20-175 (229)
101 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.9E-24 162.7 15.3 162 238-434 27-188 (208)
102 2o6s_A Variable lymphocyte rec 99.8 2.1E-19 7.3E-24 161.5 13.6 173 24-208 10-182 (208)
103 3cvr_A Invasion plasmid antige 99.8 2.6E-19 8.9E-24 183.5 15.7 148 238-434 99-253 (571)
104 2v9t_B SLIT homolog 2 protein 99.8 8.4E-19 2.9E-23 158.7 15.5 153 242-425 14-166 (220)
105 2wfh_A SLIT homolog 2 protein 99.8 2.9E-19 1E-23 158.0 12.1 137 338-475 30-182 (193)
106 1w8a_A SLIT protein; signaling 99.8 4.6E-19 1.6E-23 156.9 13.1 137 339-475 29-182 (192)
107 2xot_A Amphoterin-induced prot 99.8 6.4E-19 2.2E-23 172.5 13.4 177 23-204 20-202 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.3E-23 156.5 15.1 153 24-181 14-167 (220)
109 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.6E-23 164.0 14.5 171 18-204 43-213 (291)
110 3e6j_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 154.9 16.4 156 265-452 21-176 (229)
111 1h6t_A Internalin B; cell adhe 99.8 8.3E-18 2.8E-22 159.2 17.7 151 235-425 64-214 (291)
112 1m9s_A Internalin B; cell inva 99.8 3.2E-18 1.1E-22 177.5 14.1 128 235-400 83-210 (605)
113 3cvr_A Invasion plasmid antige 99.8 1E-17 3.5E-22 171.7 17.7 183 22-233 60-249 (571)
114 3sb4_A Hypothetical leucine ri 99.7 3.8E-18 1.3E-22 164.8 10.9 223 142-418 100-328 (329)
115 4ezg_A Putative uncharacterize 99.7 1.2E-17 4.2E-22 148.5 12.6 153 236-424 41-194 (197)
116 1m9s_A Internalin B; cell inva 99.7 9E-18 3.1E-22 174.1 13.2 173 17-205 39-211 (605)
117 4fs7_A Uncharacterized protein 99.7 1.3E-16 4.5E-21 158.1 19.9 147 239-421 230-376 (394)
118 3sb4_A Hypothetical leucine ri 99.7 7.9E-18 2.7E-22 162.6 10.2 221 166-441 100-327 (329)
119 1w8a_A SLIT protein; signaling 99.7 3.1E-17 1.1E-21 145.0 11.8 90 338-427 53-142 (192)
120 4ezg_A Putative uncharacterize 99.7 3.7E-17 1.3E-21 145.4 12.0 151 45-204 43-194 (197)
121 1xeu_A Internalin C; cellular 99.7 3.9E-17 1.3E-21 152.1 12.2 167 216-426 21-187 (263)
122 4fdw_A Leucine rich hypothetic 99.7 7E-16 2.4E-20 152.0 21.3 266 118-424 112-383 (401)
123 1xeu_A Internalin C; cellular 99.7 2.9E-17 9.8E-22 152.9 10.7 171 237-450 17-187 (263)
124 4fdw_A Leucine rich hypothetic 99.7 1.8E-15 6.2E-20 149.1 22.1 264 20-299 112-382 (401)
125 4fs7_A Uncharacterized protein 99.7 1.8E-15 6.1E-20 149.9 21.1 333 36-416 61-393 (394)
126 1dce_A Protein (RAB geranylger 99.7 2E-19 6.8E-24 185.4 -8.2 204 164-429 346-551 (567)
127 2o6r_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 135.8 13.3 115 338-452 27-141 (177)
128 2ell_A Acidic leucine-rich nuc 99.7 4.7E-16 1.6E-20 134.4 11.6 87 338-424 70-160 (168)
129 1dce_A Protein (RAB geranylger 99.7 2.7E-18 9.3E-23 177.0 -3.8 183 18-208 346-550 (567)
130 2ell_A Acidic leucine-rich nuc 99.6 7.1E-16 2.4E-20 133.3 10.1 138 237-405 22-164 (168)
131 2je0_A Acidic leucine-rich nuc 99.6 7E-16 2.4E-20 130.4 9.7 128 263-420 17-149 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 131.7 12.5 127 24-156 13-139 (193)
133 2o6r_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 128.0 13.1 130 23-157 9-138 (177)
134 4b8c_D Glucose-repressible alc 99.6 2.6E-16 9E-21 167.3 3.7 118 234-383 219-336 (727)
135 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 128.7 7.3 129 238-396 16-149 (149)
136 4b8c_D Glucose-repressible alc 99.6 3.1E-16 1.1E-20 166.7 3.4 180 183-399 216-403 (727)
137 3g39_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 127.1 11.3 110 340-452 10-119 (170)
138 4gt6_A Cell surface protein; l 99.6 2.6E-13 8.8E-18 134.3 22.7 299 61-423 54-369 (394)
139 4gt6_A Cell surface protein; l 99.5 5.7E-13 1.9E-17 131.8 23.0 335 36-424 53-391 (394)
140 2r9u_A Variable lymphocyte rec 99.5 2.5E-14 8.4E-19 123.9 11.3 109 341-452 14-122 (174)
141 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.2E-19 125.3 8.9 134 16-155 14-152 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.2E-19 125.3 8.8 83 340-424 65-153 (176)
143 1ds9_A Outer arm dynein; leuci 99.5 4E-16 1.4E-20 138.7 -5.2 152 238-424 17-185 (198)
144 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.7E-18 117.5 12.2 110 288-428 10-119 (170)
145 2r9u_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 114.9 12.3 91 338-428 32-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.8E-20 135.9 -6.0 154 259-447 14-184 (198)
147 2ifg_A High affinity nerve gro 99.4 6.9E-13 2.4E-17 129.0 10.3 109 342-453 11-121 (347)
148 4h09_A Hypothetical leucine ri 99.3 1.3E-10 4.4E-15 114.4 23.3 311 45-410 45-355 (379)
149 4h09_A Hypothetical leucine ri 99.3 3.3E-10 1.1E-14 111.4 25.1 317 17-389 42-358 (379)
150 2ifg_A High affinity nerve gro 99.3 5.3E-12 1.8E-16 122.7 10.0 114 338-452 30-145 (347)
151 3un9_A NLR family member X1; l 99.3 2E-13 6.9E-18 133.1 -1.2 165 239-426 72-254 (372)
152 3un9_A NLR family member X1; l 99.2 3.1E-13 1.1E-17 131.8 -4.4 160 45-204 71-252 (372)
153 2ra8_A Uncharacterized protein 98.8 2.4E-09 8.2E-14 103.4 4.7 162 235-422 168-341 (362)
154 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.9E-13 98.6 5.9 161 237-426 137-322 (362)
155 3rfe_A Platelet glycoprotein I 98.4 1.4E-07 4.9E-12 76.3 4.3 62 413-474 33-112 (130)
156 1io0_A Tropomodulin; LRR prote 98.4 4.2E-08 1.4E-12 85.4 0.6 42 259-300 32-78 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 3.8E-08 1.3E-12 85.7 0.2 123 279-425 28-165 (185)
158 3rw6_A Nuclear RNA export fact 98.3 8.2E-07 2.8E-11 81.1 5.9 62 338-401 169-234 (267)
159 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.5E-12 86.4 0.4 96 344-441 148-257 (267)
160 3e4g_A ATP synthase subunit S, 98.2 2.5E-07 8.4E-12 78.3 1.4 84 339-422 61-150 (176)
161 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.5E-11 73.9 2.5 82 47-129 62-149 (176)
162 3rfe_A Platelet glycoprotein I 97.1 0.0011 3.9E-08 53.2 7.1 57 342-400 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00017 5.8E-09 62.2 1.4 108 46-154 41-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00033 1.1E-08 60.4 1.6 85 338-422 40-137 (197)
165 2lz0_A Uncharacterized protein 72.9 9 0.00031 28.4 6.1 46 351-397 8-53 (100)
166 2lz0_A Uncharacterized protein 68.9 6 0.0002 29.4 4.3 49 372-421 5-53 (100)
167 2k1k_A Ephrin type-A receptor 32.8 26 0.0009 20.5 1.9 15 484-498 15-29 (38)
168 2klu_A T-cell surface glycopro 28.5 27 0.00092 23.2 1.6 14 495-508 24-37 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-55 Score=472.17 Aligned_cols=465 Identities=32% Similarity=0.510 Sum_probs=382.0
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 81 (536)
|+|++|.+.+.+|.. .+++|++|++++|.+++.+|..++..+++|+.|++++|.+++..|..|+++++|++|++++|.
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 556666665555533 566666666666666667777777656788888888888888888888888888888888888
Q ss_pred CccccchhHhhCCCCCCEEEcccCccCccCCccccCCC-CCCEEEccCCcCcccCCcCCCC--CCccCeeecccCcCCCC
Q 045598 82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLT-NLKWLQLEGSRFVGEIPQSLSK--CSSLEGLYLNNNSLSGK 158 (536)
Q Consensus 82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~l~~n~~~~~ 158 (536)
+++.+|...+..+++|++|++++|.+++..+..+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 88788877667888888898888888877777777776 8999999998888777777766 78899999999999888
Q ss_pred CCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCC
Q 045598 159 IPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFN 237 (536)
Q Consensus 159 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~ 237 (536)
.|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+.++.. +..
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~ 488 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSN 488 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-Hhc
Confidence 89999999999999999999998999999999999999999999998877766 6789999999999998777765 899
Q ss_pred CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcc
Q 045598 238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQ 317 (536)
Q Consensus 238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 317 (536)
+++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..........
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888765432111110
Q ss_pred ccc--eeE-Eee-------------------------------------cccee--eeccccccccceEEccCCcCcCCC
Q 045598 318 IRE--KFE-FTT-------------------------------------KNIAY--IYQGKVLSLLSGLDLSCNKLIGPI 355 (536)
Q Consensus 318 ~~~--~~~-~~~-------------------------------------~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~ 355 (536)
... ... ... +.... ......++.|+.|++++|.+++.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 000 000 000 00000 001123578999999999999999
Q ss_pred cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccc
Q 045598 356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA 435 (536)
Q Consensus 356 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 435 (536)
|..++.+++|+.|+|++|++++.+|+.++++++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|.. ..+.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~ 727 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 4788
Q ss_pred cCCccccccCcCCCCCCCCCCCCCCCCCcccCCCC
Q 045598 436 TFNESSYEGNTFLCGLPLPICRSPATMSEASIGNE 470 (536)
Q Consensus 436 ~l~~l~l~~n~~~c~~~l~~C~~~~~~~~~~~~~~ 470 (536)
++...++.|||.+|+.++..|.......+..+.+.
T Consensus 728 ~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~ 762 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 762 (768)
T ss_dssp GSCGGGGCSCTEEESTTSCCCCSCC----------
T ss_pred cCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCc
Confidence 99999999999999999888987776666555443
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-52 Score=451.19 Aligned_cols=467 Identities=21% Similarity=0.196 Sum_probs=345.6
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|.+++..+..+.++++|++|++++|...+.++...+..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 48999999998889999999999999999997666775555566899999999999999888999999999999999999
Q ss_pred cCccccchh-HhhCCCCCCEEEcccCccCccCC-ccccCCCCCCEEEccCCcCcccCCcCCCCC--CccCeeecccCcCC
Q 045598 81 HLTGEIPEH-LAVGCVNLRFLALSNNNLQGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQSLSKC--SSLEGLYLNNNSLS 156 (536)
Q Consensus 81 ~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~l~~n~~~ 156 (536)
.+++.++.. .++.+++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 998655553 35789999999999999987655 578899999999999999988777777766 78888888888887
Q ss_pred CCCCcccCCCCC------CCeEEccCCccccCCccccc------------------------------------C--CCC
Q 045598 157 GKIPRWLGNLTR------LQCIIMPNNHLEGPIPVEFC------------------------------------Q--LDL 192 (536)
Q Consensus 157 ~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~------------------------------------~--l~~ 192 (536)
+..+..+..+++ |++|++++|.+.+..+..+. + .++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 766665555554 78888877765433332221 1 256
Q ss_pred CCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcc
Q 045598 193 LQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 271 (536)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 271 (536)
|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+.. +..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 7777777777776666555 5667777888777775433 3347777778888888777776667777777777888887
Q ss_pred cccccccccccccCCCCCCEEecCCCcCCCCCCccccccchh------------------------------------hh
Q 045598 272 HNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH------------------------------------EK 315 (536)
Q Consensus 272 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~------------------------------------~~ 315 (536)
+|.+....+..|..+++|+.|++++|.+++... +...... ..
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 777776666667777777777777777664321 0000000 00
Q ss_pred ccccceeEEeeccceeeecc---ccccccceEEccCCcCc-----CCCcccccCCCCCCEEeCCCccCCCCCcccccCCC
Q 045598 316 KQIREKFEFTTKNIAYIYQG---KVLSLLSGLDLSCNKLI-----GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 387 (536)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 387 (536)
......+.+..+.+...... ..+++|+.|++++|.+. +..+..|.++++|+.|+|++|.+++..+..|.+++
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 00112233333333322111 22456777777777665 33345678888899999999999988888889999
Q ss_pred CCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-------------
Q 045598 388 YVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP------------- 454 (536)
Q Consensus 388 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~------------- 454 (536)
+|++|+|++|++++..+..+. ++|+.|++++|++++..|..+ .+++.+++.+|||.|+|++.
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~ 579 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTI 579 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTT
T ss_pred hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHHHhcCccc
Confidence 999999999999877666655 789999999999998888754 57889999999999999763
Q ss_pred -------CCCCCCCCCcccCCCCcCccc
Q 045598 455 -------ICRSPATMSEASIGNERDDNL 475 (536)
Q Consensus 455 -------~C~~~~~~~~~~~~~~~~~~~ 475 (536)
.|..|...++.++.......|
T Consensus 580 ~~~~~~~~C~~p~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 580 AGPPADIYCVYPDSFSGVSLFSLSTEGC 607 (844)
T ss_dssp CCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred ccccccCccCCchhhCCCccccCccccC
Confidence 599998888887777665544
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-51 Score=433.64 Aligned_cols=461 Identities=20% Similarity=0.203 Sum_probs=337.4
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|.+++..|..+.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 4899999999888889999999999999999998655666655 889999999999999888889999999999999999
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC--eeecccCcCCCC
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE--GLYLNNNSLSGK 158 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~~~~~ 158 (536)
.++ .++...++.+++|++|++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.+.+.
T Consensus 116 ~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 116 GIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred Ccc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 998 55444457889999999999998876655666688888888888888766666666666666 566666555433
Q ss_pred C---------------------------------------------------------------------------Cccc
Q 045598 159 I---------------------------------------------------------------------------PRWL 163 (536)
Q Consensus 159 ~---------------------------------------------------------------------------~~~~ 163 (536)
. +..|
T Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~ 274 (606)
T 3t6q_A 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274 (606)
T ss_dssp CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT
T ss_pred ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh
Confidence 3 3334
Q ss_pred CCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCcc
Q 045598 164 GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 242 (536)
Q Consensus 164 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 242 (536)
..+++|++|++++|.++ ..|..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+.+.++...+..+++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 55556666666666555 344455556666666666666555444332 4556666666666665555555566666677
Q ss_pred EEEccCCcCCCcc--chhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcc-ccccchhhhcccc
Q 045598 243 TLDLSYNRLNGSI--SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSC-FDNTTLHEKKQIR 319 (536)
Q Consensus 243 ~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~~~~~ 319 (536)
+|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+.. +..... .
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~------L 427 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL------L 427 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT------C
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc------C
Confidence 7777766666443 455666677777777777766666666666777777777777666554332 333221 1
Q ss_pred ceeEEeeccceeeec--cccccccceEEccCCcCcCC---CcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeC
Q 045598 320 EKFEFTTKNIAYIYQ--GKVLSLLSGLDLSCNKLIGP---IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDL 394 (536)
Q Consensus 320 ~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (536)
..+.+..+.+..... ...+++|++|++++|.+.+. .+..+..+++|++|++++|++++..|..|..+++|++|+|
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 222333333322221 13478899999999998763 3356888999999999999999888899999999999999
Q ss_pred CCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-------------------C
Q 045598 395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-------------------I 455 (536)
Q Consensus 395 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~-------------------~ 455 (536)
++|++++..|..+.++++| .|++++|++++..|..+..+++++.+++.+|||.|+|+.. .
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~ 586 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTL 586 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCB
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCe
Confidence 9999999999999999999 9999999999988888888999999999999999999742 4
Q ss_pred CCCCCCCCcccCCCCc
Q 045598 456 CRSPATMSEASIGNER 471 (536)
Q Consensus 456 C~~~~~~~~~~~~~~~ 471 (536)
|..|...+|.++..++
T Consensus 587 C~~p~~~~g~~l~~~~ 602 (606)
T 3t6q_A 587 CENPPLLRGVRLSDVT 602 (606)
T ss_dssp EEESGGGTTCBGGGCC
T ss_pred eCCchHhCCCeeeeee
Confidence 8888777777665554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-51 Score=441.28 Aligned_cols=441 Identities=30% Similarity=0.451 Sum_probs=329.8
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|+|++|.+.+.+|. +.++++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|.. .+++|++|++++|
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n 279 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSS
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCC
Confidence 488999999988886 899999999999999998777777765 889999999999888776654 7888888888888
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcC-CCCCCccCeeecccCcCCCCC
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKI 159 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~ 159 (536)
.+++.+|..++..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 8887788777555688888888888888777888888888888888888887666654 778888888888888877677
Q ss_pred CcccCCCC-CCCeEEccCCccccCCcccccC--CCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCccccccc
Q 045598 160 PRWLGNLT-RLQCIIMPNNHLEGPIPVEFCQ--LDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTF 235 (536)
Q Consensus 160 ~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~ 235 (536)
|..+..++ +|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+ .+++|+.|++++|.+.+.++.. +
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l 438 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-L 438 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-G
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-H
Confidence 77666665 6777777777766555555554 5666666666666665555444 4556666666666665554443 6
Q ss_pred CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315 (536)
Q Consensus 236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 315 (536)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|++++..|..+.......
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~- 517 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA- 517 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666555433211
Q ss_pred ccccceeEEeecccee-eec-cccccccceEEccCCcCcCCCcc------------------------------------
Q 045598 316 KQIREKFEFTTKNIAY-IYQ-GKVLSLLSGLDLSCNKLIGPIPL------------------------------------ 357 (536)
Q Consensus 316 ~~~~~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~------------------------------------ 357 (536)
.+.+..+.+.. ++. ...+++|+.|++++|.+.+.+|.
T Consensus 518 -----~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 518 -----ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp -----EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred -----EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 22222222221 111 12356777777777776655443
Q ss_pred ----------------------------------cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC
Q 045598 358 ----------------------------------QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403 (536)
Q Consensus 358 ----------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 403 (536)
.++.+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 4455688999999999999999999999999999999999999999
Q ss_pred chhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 404 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 404 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
|..+.++++|+.||+++|++++.+|..+..+++++.+++++|+.....|
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9999999999999999999999999999999999999999998766444
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-48 Score=417.60 Aligned_cols=466 Identities=21% Similarity=0.212 Sum_probs=283.0
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 81 (536)
|+|++|.+++..+..+.++++|++|++++|.++ .+|...+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 455555555333334555556666666655555 3332222235566666666666655555556666666666666666
Q ss_pred CccccchhHhh--CCCCCCEEEcccCccCccCCcccc-------------------------------------------
Q 045598 82 LTGEIPEHLAV--GCVNLRFLALSNNNLQGHMFSRNF------------------------------------------- 116 (536)
Q Consensus 82 l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~------------------------------------------- 116 (536)
++ .++...+. .+++|++|++++|.+++..+..+.
T Consensus 157 l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 157 IQ-ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CC-CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred cc-ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 55 33322211 234555555555555443332221
Q ss_pred --------CCC--CCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc-----
Q 045598 117 --------NLT--NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG----- 181 (536)
Q Consensus 117 --------~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~----- 181 (536)
+++ +|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|...+
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc
Confidence 121 25555555555554444455555555555555555544333333333333333333221110
Q ss_pred ----CCcccccCCCCCCEEEccCCcCcccCCCCC-CCC----------------------------CccEEEccCCCCCC
Q 045598 182 ----PIPVEFCQLDLLQILDISDNNISGSLPSCF-HPL----------------------------SIKQVHLSKNMLHG 228 (536)
Q Consensus 182 ----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~----------------------------~L~~L~l~~n~~~~ 228 (536)
.....|..+++|+.|++++|.+.+..+..+ .++ +|+.|++++|.+.+
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~ 395 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence 001134445555555555665555444333 233 45555555566543
Q ss_pred cccccccCCCCCccEEEccCCcCCCccc-hhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCC--CCCCc
Q 045598 229 QLKRGTFFNCSSLVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH--GPIPS 305 (536)
Q Consensus 229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~ 305 (536)
. .+..|..+++|++|++++|.+.+.++ ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|.
T Consensus 396 ~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 396 I-ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp E-CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred E-ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence 3 33458889999999999999876554 67888999999999999988777888888888999999888876 34555
Q ss_pred cccccchhhhccccceeEEeeccceeeecc--ccccccceEEccCCcCcCCCc--------ccccCCCCCCEEeCCCccC
Q 045598 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGPIP--------LQIGNLTRIQTLNLSHNNL 375 (536)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l 375 (536)
.+..... ...+.+..+.+..++.. ..+++|++|++++|.+++..+ ..+.++++|++|+|++|++
T Consensus 475 ~~~~l~~------L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 475 PFQPLRN------LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TTTTCTT------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred ccccCCC------CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 5544332 22334444444444432 347899999999999886422 2378899999999999999
Q ss_pred CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcc-ccccCCccccccCcCCCCCCC-
Q 045598 376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNTFLCGLPL- 453 (536)
Q Consensus 376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~l~l~~n~~~c~~~l- 453 (536)
+.+.++.|.++++|++|+|++|+++++.+..|.++++|+.|++++|++++..+..+. .+++++.+++.+|||.|+|+.
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~ 628 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccH
Confidence 977667899999999999999999988888889999999999999999988887776 688999999999999999985
Q ss_pred C--------------------CCCCCCCCCcccCCCCcCcccc
Q 045598 454 P--------------------ICRSPATMSEASIGNERDDNLI 476 (536)
Q Consensus 454 ~--------------------~C~~~~~~~~~~~~~~~~~~~~ 476 (536)
. .|..|...+++++..+++..++
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~ 671 (680)
T 1ziw_A 629 AWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK 671 (680)
T ss_dssp SSEECCSSCC---------------------------------
T ss_pred HHHHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhcC
Confidence 2 4667776666666666555443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-49 Score=416.21 Aligned_cols=456 Identities=19% Similarity=0.159 Sum_probs=343.0
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|.+++..+..+.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh-chhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 478888888887777888899999999999888844454444 4788999999999888877888899999999999999
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCc-cCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC----eeecccCcC
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQG-HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE----GLYLNNNSL 155 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~----~L~l~~n~~ 155 (536)
.++ .++...++.+++|++|++++|.+++ ..+..+.++++|++|++++|.+.+..+..+..+.+|+ .|++++|.+
T Consensus 115 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 115 KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp CCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred ccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence 887 5554445788889999999888876 3477788888899888888888776666555554443 455555544
Q ss_pred CCCCCcc-------------------------------------------------------------------------
Q 045598 156 SGKIPRW------------------------------------------------------------------------- 162 (536)
Q Consensus 156 ~~~~~~~------------------------------------------------------------------------- 162 (536)
.+..+..
T Consensus 194 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 273 (606)
T 3vq2_A 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273 (606)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence 4222222
Q ss_pred -------cCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccccc
Q 045598 163 -------LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 235 (536)
Q Consensus 163 -------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 235 (536)
+..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+. ..|.. ..++|+.|++++|...+.. .+
T Consensus 274 ~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp~~-~l~~L~~L~l~~n~~~~~~---~~ 346 (606)
T 3vq2_A 274 FSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFPTL-DLPFLKSLTLTMNKGSISF---KK 346 (606)
T ss_dssp CCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCCCC-CCSSCCEEEEESCSSCEEC---CC
T ss_pred ccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccccC-CCCccceeeccCCcCccch---hh
Confidence 2334555566666665543 23 6777889999999999994 55555 8889999999999654443 37
Q ss_pred CCCCCccEEEccCCcCCCc--cchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC-ccccccch
Q 045598 236 FNCSSLVTLDLSYNRLNGS--ISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCFDNTTL 312 (536)
Q Consensus 236 ~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~ 312 (536)
..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+.....
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 7899999999999998765 37788889999999999999884 66788899999999999999888766 45544332
Q ss_pred hhhccccceeEEeeccceeeec--cccccccceEEccCCcCcC-CCcccccCCCCCCEEeCCCccCCCCCcccccCCCCC
Q 045598 313 HEKKQIREKFEFTTKNIAYIYQ--GKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYV 389 (536)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 389 (536)
.. .+.+..+.+..... ...+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..|..+..+++|
T Consensus 426 L~------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 426 LL------YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp CC------EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CC------EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 22 22233333332221 2347899999999999987 478899999999999999999999889999999999
Q ss_pred CEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccc-cCCccccccCcCCCCCCCC--------------
Q 045598 390 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA-TFNESSYEGNTFLCGLPLP-------------- 454 (536)
Q Consensus 390 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~l~~n~~~c~~~l~-------------- 454 (536)
++|++++|++++..|..+.++++|+.|++++|+++ .+|..+..++ +++.+++.+|||.|+|+..
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~ 578 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLV 578 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBS
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCccccc
Confidence 99999999999988999999999999999999999 5666677786 5999999999999999863
Q ss_pred -----CCCCCCCCCcccCCCCcCc
Q 045598 455 -----ICRSPATMSEASIGNERDD 473 (536)
Q Consensus 455 -----~C~~~~~~~~~~~~~~~~~ 473 (536)
.|..|...++..+..++..
T Consensus 579 ~~~~~~C~~p~~~~~~~l~~~~~~ 602 (606)
T 3vq2_A 579 NVEQMTCATPVEMNTSLVLDFNNS 602 (606)
T ss_dssp SGGGCCCC----------------
T ss_pred CCccceeCCChHhCCCEeeecccc
Confidence 4777766666666555544
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-47 Score=399.94 Aligned_cols=419 Identities=22% Similarity=0.215 Sum_probs=300.6
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+.+|.++++|++|++++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 4788888888777777888888888888888887 444444444788888888888888777778888888888888888
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCcc-CCccccCCCCCCEEEccCCcCcccCCcCCCCCCcc----CeeecccCcC
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL----EGLYLNNNSL 155 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l~~n~~ 155 (536)
.++ .++...++.+++|++|++++|.++.. .+..+.++++|++|++++|.+.+..+..+..+.+| +.+++++|.+
T Consensus 111 ~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 887 66654457788888888888888763 46777888888888888888776666666666666 6677777666
Q ss_pred CCCCCcccCCCCCCCeEEccCC----------------------------------------------------------
Q 045598 156 SGKIPRWLGNLTRLQCIIMPNN---------------------------------------------------------- 177 (536)
Q Consensus 156 ~~~~~~~~~~l~~L~~L~l~~n---------------------------------------------------------- 177 (536)
.+..+..+... +|++|++++|
T Consensus 190 ~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 190 NFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred eecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 54444433332 3444444333
Q ss_pred ccccCCcccccCCCCCCEEEccCCcCcccCCCCC--------------------CCCCccEEEccCCCCCCcccccccCC
Q 045598 178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF--------------------HPLSIKQVHLSKNMLHGQLKRGTFFN 237 (536)
Q Consensus 178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------~~~~L~~L~l~~n~~~~~~~~~~~~~ 237 (536)
.+.+..+..+..+++|+.|++++|.+.+...... ..++|+.+++++|.+.+..+. ..
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~---~~ 345 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VD 345 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC---CB
T ss_pred hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc---cc
Confidence 1112222334444555555555555543222222 333444444444443322221 45
Q ss_pred CCCccEEEccCCcCCCcc--chhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC-ccccccchhh
Q 045598 238 CSSLVTLDLSYNRLNGSI--SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCFDNTTLHE 314 (536)
Q Consensus 238 ~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~ 314 (536)
+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~----- 419 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS----- 419 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT-----
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc-----
Confidence 566666677666665433 45566667777777777766643333 6666777777777776665444 22322
Q ss_pred hccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-CCCcccccCCCCCCEEe
Q 045598 315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKYVESLD 393 (536)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 393 (536)
+++|++|++++|.+.+..|..+.++++|++|++++|.+. +..|..+..+++|++|+
T Consensus 420 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 420 -----------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp -----------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred -----------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 689999999999999989999999999999999999997 56889999999999999
Q ss_pred CCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC
Q 045598 394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 454 (536)
Q Consensus 394 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~ 454 (536)
+++|++++..|..+..+++|+.|++++|++++..|..+..+++++.+++.+||+.|+|+..
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999888999999999999999999999998888889999999999999999999764
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.2e-47 Score=398.63 Aligned_cols=418 Identities=18% Similarity=0.207 Sum_probs=336.8
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcC------cc------cCChhH---------------------hhcC--
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNF------RG------HIPVEI---------------------ADVL-- 45 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~------~~------~~p~~~---------------------~~~l-- 45 (536)
.|+|+++++.|.+|..++++++|++|++++|.+ .+ .+|... ...+
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 378899999999998999999999999988865 11 112111 1000
Q ss_pred ----------------CCCcEEEcc--CCCCcccCCccCCCCCCCCEEEccCCcCccc-----------------cchhH
Q 045598 46 ----------------PSLYAFNNS--MNALDGSIPSSFGNMKFLQFLDLSNNHLTGE-----------------IPEHL 90 (536)
Q Consensus 46 ----------------~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~ 90 (536)
..++.+.+. .|.+++ +|.+++++++|++|++++|.+++. +|..+
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence 011111111 457777 888999999999999999999854 88776
Q ss_pred hh--CCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCc-Ccc-cCCcCCCCC------CccCeeecccCcCCCCCC
Q 045598 91 AV--GCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSR-FVG-EIPQSLSKC------SSLEGLYLNNNSLSGKIP 160 (536)
Q Consensus 91 ~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~ 160 (536)
+ ++++|++|++++|.+.+..+..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+. .+|
T Consensus 244 -~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 244 -KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp -CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred -hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence 5 79999999999999998889999999999999999998 887 677777665 89999999999998 788
Q ss_pred c--ccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCC-ccEEEccCCCCCCcccccccCC
Q 045598 161 R--WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFN 237 (536)
Q Consensus 161 ~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~ 237 (536)
. .+..+++|++|++++|.+.+..| .+..+++|+.|++++|++...+.....+.+ |+.|++++|.+. .++.. +..
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~ 398 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDA 398 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhh
Confidence 7 89999999999999999987777 888899999999999999855545457777 999999999987 66654 555
Q ss_pred C--CCccEEEccCCcCCCccchhhh-------CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598 238 C--SSLVTLDLSYNRLNGSISDWVD-------GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD 308 (536)
Q Consensus 238 ~--~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 308 (536)
. ++|++|++++|.+.+..|..+. .+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+.
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 4 4899999999999988888777 778999999999999954445566789999999999999854444433
Q ss_pred ccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCccccc--CCCCCCEEeCCCccCCCCCcccccCC
Q 045598 309 NTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG--NLTRIQTLNLSHNNLTGSIPSTFSNL 386 (536)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l 386 (536)
... .....+++|++|++++|.++ .+|..+. .+++|++|+|++|++++ +|..+..+
T Consensus 479 ~~~---------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l 535 (636)
T 4eco_A 479 DEN---------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535 (636)
T ss_dssp ETT---------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred ccc---------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence 210 00011348999999999999 6777776 89999999999999997 78889999
Q ss_pred CCCCEEeC------CCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598 387 KYVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450 (536)
Q Consensus 387 ~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~ 450 (536)
++|++|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|..+. ++++.+++++||+.|-
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 99999999 56778889999999999999999999999 57787654 7999999999999873
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-45 Score=382.60 Aligned_cols=434 Identities=19% Similarity=0.175 Sum_probs=292.8
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 81 (536)
+|.++.+++ .+|..+. +.+++|++++|.+++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.
T Consensus 17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 455556665 5666553 57999999999999555555554 8999999999999999889999999999999999999
Q ss_pred CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCc
Q 045598 82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 161 (536)
Q Consensus 82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 161 (536)
++ .++...++++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+.
T Consensus 93 l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cc-ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 98 44444458999999999999999988788899999999999999999875545566699999999999999977778
Q ss_pred ccCCCCCCC--eEEccCCccccCCcccccCC-------------------------------------------------
Q 045598 162 WLGNLTRLQ--CIIMPNNHLEGPIPVEFCQL------------------------------------------------- 190 (536)
Q Consensus 162 ~~~~l~~L~--~L~l~~n~~~~~~~~~~~~l------------------------------------------------- 190 (536)
.++.+++|+ +|++++|.+.+..+..+...
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 888899998 88888888776555443221
Q ss_pred --CCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccE
Q 045598 191 --DLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSH 267 (536)
Q Consensus 191 --~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 267 (536)
.+|+.|++++|.+.+..+..+ .+++|+.|++++|.+. .++.. +..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 045666666666666555544 4567777777777664 44444 666677777777777776665666666777777
Q ss_pred EEcccccccccccc-cccCCCCCCEEecCCCcCCCCC--CccccccchhhhccccceeEEeeccceeeecc--ccccccc
Q 045598 268 LILGHNNLEGEVPI-QLCELNQLQLLDLSNNNLHGPI--PSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLS 342 (536)
Q Consensus 268 L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~ 342 (536)
|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+...... ..+.+..+.+...... ..+++|+
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L------~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL------QSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC------CEEECCSCSCEEECTTTTTTCTTCS
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC------CEEECCCCcCCcCCHHHhcCCccCC
Confidence 77777766544433 3666667777777766665443 3333322211 1122222222222111 2245566
Q ss_pred eEEccCCcCcCCCcc-cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc---CchhhhCCCCCCEEEc
Q 045598 343 GLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK---IPHQLVELKTLEVFSV 418 (536)
Q Consensus 343 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l 418 (536)
+|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+.|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 666666665544432 355566666666666666655555566666666666666665541 2244555666666666
Q ss_pred cCCcCcccCCCCccccccCCccccccCcCC
Q 045598 419 AYNNLSGEIPEWTAQFATFNESSYEGNTFL 448 (536)
Q Consensus 419 ~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~ 448 (536)
++|++++..|..+..+++++.+++++|...
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCccChhhhccccCCCEEECCCCccC
Confidence 666666655555555666666666665543
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-44 Score=386.03 Aligned_cols=446 Identities=21% Similarity=0.214 Sum_probs=289.3
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|++++..+..+.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..+.+|+++++|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 4788899888777777888899999999999888555555554 889999999999888666667889999999999999
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCC--CCCccCeeecccCcCCCC
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS--KCSSLEGLYLNNNSLSGK 158 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~n~~~~~ 158 (536)
.++ .++...++++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+.
T Consensus 108 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 108 SIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp CCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred ccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 887 66655557888999999999988887777788888888888888877755444332 345666666666665544
Q ss_pred CCcc---------------------------------------------------cCCCC--CCCeEEccCCccccCCcc
Q 045598 159 IPRW---------------------------------------------------LGNLT--RLQCIIMPNNHLEGPIPV 185 (536)
Q Consensus 159 ~~~~---------------------------------------------------~~~l~--~L~~L~l~~n~~~~~~~~ 185 (536)
.+.. +..++ +|++|++++|.+.+..+.
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 266 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc
Confidence 4332 22232 266666666666655556
Q ss_pred cccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCC--------cccccccCCCCCccEEEccCCcCCCccc
Q 045598 186 EFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHG--------QLKRGTFFNCSSLVTLDLSYNRLNGSIS 256 (536)
Q Consensus 186 ~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 256 (536)
.|..+++|+.|++++|.+.+..+..+ .+.+|+.+++++|...+ .+....|..+++|++|++++|.+.+..+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 66666666666666666665544333 33444444444332211 1111134555666666666666655555
Q ss_pred hhhhCCCCccEEEc----------------------------ccccccccccccccCCCCCCEEecCCCcCCCCCC-ccc
Q 045598 257 DWVDGLSQLSHLIL----------------------------GHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCF 307 (536)
Q Consensus 257 ~~~~~l~~L~~L~L----------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~ 307 (536)
..+..+++|++|++ ++|.+++..+..|..+++|+.|++++|.+.+..+ ..+
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 426 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc
Confidence 55555444444444 4444454556667777788888888877765443 344
Q ss_pred cccchhhhcccc------------------ceeEEeeccce---eee-ccccccccceEEccCCcCcCCCcccccCCCCC
Q 045598 308 DNTTLHEKKQIR------------------EKFEFTTKNIA---YIY-QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRI 365 (536)
Q Consensus 308 ~~~~~~~~~~~~------------------~~~~~~~~~~~---~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 365 (536)
..........+. ..+.+..+.+. ..+ ....+++|++|++++|.+++..+..|.++++|
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence 333221111111 11111111111 111 11335678888888888877777777788888
Q ss_pred CEEeCCCccCCCCCc--------ccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccC
Q 045598 366 QTLNLSHNNLTGSIP--------STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 437 (536)
Q Consensus 366 ~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 437 (536)
++|++++|++++..+ ..|.++++|++|+|++|+++.+.+..|.++++|+.|++++|++++..+..+..++++
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 888888887775322 236777888888888888875555667888888888888888887666666777888
Q ss_pred CccccccCcCC
Q 045598 438 NESSYEGNTFL 448 (536)
Q Consensus 438 ~~l~l~~n~~~ 448 (536)
+.+++.+|...
T Consensus 587 ~~L~L~~N~l~ 597 (680)
T 1ziw_A 587 KSLNLQKNLIT 597 (680)
T ss_dssp CEEECTTSCCC
T ss_pred CEEECCCCcCC
Confidence 88888887543
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-45 Score=393.79 Aligned_cols=409 Identities=20% Similarity=0.241 Sum_probs=204.2
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEc-cCCcCccc-------------------------------------------
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDI-SNNNFRGH------------------------------------------- 36 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l-s~~~~~~~------------------------------------------- 36 (536)
.|+|+++++.|.+|..++++++|++|+| ++|.+.|.
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 3899999999999999999999999999 77765544
Q ss_pred ---------------------------------CChhHhhcCCCCcEEEccCCCCcc-----------------cCCccC
Q 045598 37 ---------------------------------IPVEIADVLPSLYAFNNSMNALDG-----------------SIPSSF 66 (536)
Q Consensus 37 ---------------------------------~p~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~ 66 (536)
+|..+.. +++|+.|++++|.+++ .+|..+
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence 3433333 4455555555555554 144444
Q ss_pred C--CCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCc-cCc-cCCcccc-------CCCCCCEEEccCCcCcccC
Q 045598 67 G--NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN-LQG-HMFSRNF-------NLTNLKWLQLEGSRFVGEI 135 (536)
Q Consensus 67 ~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~i~~~~ 135 (536)
+ ++++|++|++++|.+.+.+|..+ +.+++|++|++++|. +++ ..|..+. .+++|++|++++|.+. .+
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred hhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 4 55555555555555444555333 445555555555554 443 2332222 2335555555555555 34
Q ss_pred Cc--CCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCC-CCEEEccCCcCcccCCCCCC
Q 045598 136 PQ--SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL-LQILDISDNNISGSLPSCFH 212 (536)
Q Consensus 136 ~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~ 212 (536)
|. .+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+. ..|..+..+++ |+.|++++|.+. ..|..+.
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 44 4555555555555555554 344 4555555555555555554 34444445554 555555555554 2222221
Q ss_pred -C--CCccEEEccCCCCCCcccccc--cC--CCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccC
Q 045598 213 -P--LSIKQVHLSKNMLHGQLKRGT--FF--NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCE 285 (536)
Q Consensus 213 -~--~~L~~L~l~~n~~~~~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 285 (536)
. .+|+.|++++|.+.+.++... +. .+++|+.|++++|.+....+..+..+++|+.|++++|.++ .+|..+..
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~ 718 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK 718 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc
Confidence 1 225555555555544332110 11 2234555555555555322233334555555555555554 23322211
Q ss_pred --------CCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcc
Q 045598 286 --------LNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPL 357 (536)
Q Consensus 286 --------l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 357 (536)
+++|+.|++++|+++ .+|..+.. ..+++|+.|++++|.+++ +|.
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~--------------------------~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA--------------------------TTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------TTCTTCCEEECCSSCCSS-CCC
T ss_pred cccccccccCCccEEECCCCCCc-cchHHhhh--------------------------ccCCCcCEEEeCCCCCCc-cch
Confidence 114555555555554 22322220 013455555555555554 444
Q ss_pred cccCCCCCCEEeCCC------ccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCc
Q 045598 358 QIGNLTRIQTLNLSH------NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 431 (536)
Q Consensus 358 ~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 431 (536)
.+..+++|+.|+|++ |++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++....+..+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 555555555555543 444445555555555555555555555 24444332 355555555555554444444
Q ss_pred cccccCCccccccCcCC
Q 045598 432 AQFATFNESSYEGNTFL 448 (536)
Q Consensus 432 ~~~~~l~~l~l~~n~~~ 448 (536)
+.........+.+|++.
T Consensus 848 ~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 848 CPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHHHHTTCCEEECCTTS
T ss_pred cccccchheeecCCCcc
Confidence 44333444444444443
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-44 Score=381.68 Aligned_cols=428 Identities=18% Similarity=0.115 Sum_probs=344.6
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 81 (536)
++.++++++ .+|..+ .+++++|++++|.+++..+..+ ..+++|++|++++|.+++..|.+|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~-~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCS-SCCTTS--CTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcc-cCCCCC--CCCcCEEECCCCCcCEeChhhc-cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 566777776 667655 3889999999999994444444 458999999999999998889999999999999999999
Q ss_pred CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcc-cCCcCCCCCCccCeeecccCcCCCCCC
Q 045598 82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIP 160 (536)
Q Consensus 82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~ 160 (536)
++ .++...++++++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+..+
T Consensus 92 l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 99 5543444899999999999999998888889999999999999999986 458899999999999999999987777
Q ss_pred cccCCCCCCC----eEEccCCccccCCccccc------------------------------------------------
Q 045598 161 RWLGNLTRLQ----CIIMPNNHLEGPIPVEFC------------------------------------------------ 188 (536)
Q Consensus 161 ~~~~~l~~L~----~L~l~~n~~~~~~~~~~~------------------------------------------------ 188 (536)
..++.+++|+ ++++++|.+.+..+..+.
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 7776666554 677777766644443333
Q ss_pred --------------------------------CCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccC
Q 045598 189 --------------------------------QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236 (536)
Q Consensus 189 --------------------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 236 (536)
.+++|+.|++++|.+... +......+|+.|++++|.+ +.++. +
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~~n~l-~~lp~--~- 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-EDVPKHFKWQSLSIIRCQL-KQFPT--L- 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEESCCC-SSCCC--C-
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhh-hhccccccCCEEEcccccC-ccccc--C-
Confidence 234455555555555432 2334567899999999999 67773 5
Q ss_pred CCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccc--ccccccCCCCCCEEecCCCcCCCCCCccccccchhh
Q 045598 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE--VPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE 314 (536)
Q Consensus 237 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 314 (536)
.+++|++|++++|...+.. .+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++.. ..+.......
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCC
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCC
Confidence 8999999999999655433 566899999999999999865 3788999999999999999988643 4454433222
Q ss_pred hccccceeEEeeccceeee---ccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCC-CCcccccCCCCCC
Q 045598 315 KKQIREKFEFTTKNIAYIY---QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVE 390 (536)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 390 (536)
.+.+..+.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|+
T Consensus 403 ------~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 403 ------HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp ------EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ------eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 2222222222221 12347899999999999999899999999999999999999997 4788999999999
Q ss_pred EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCC
Q 045598 391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 448 (536)
Q Consensus 391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~ 448 (536)
+|++++|++++..|..+..+++|+.|++++|++++..|..+..+++++.+++.+|...
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 9999999999888999999999999999999999998999989999999999999865
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-44 Score=393.48 Aligned_cols=415 Identities=21% Similarity=0.210 Sum_probs=297.1
Q ss_pred CEEeccccccccC-CCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCcc--CCCCCCCCEEEc
Q 045598 1 TLSLVNDSLGGPF-RLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS--FGNMKFLQFLDL 77 (536)
Q Consensus 1 ~L~L~~~~~~~~~-~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L 77 (536)
+|||++|...+.+ |..+.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..+.. |.++++|++|++
T Consensus 52 ~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 4899999777666 778999999999999999999666666665 889999999999998766654 999999999999
Q ss_pred cCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCC--CCCCEEEccCCcCcccCCcCCCCCCc------cCeee
Q 045598 78 SNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNL--TNLKWLQLEGSRFVGEIPQSLSKCSS------LEGLY 149 (536)
Q Consensus 78 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~ 149 (536)
++|.+++..+...++++++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|+
T Consensus 131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 210 (844)
T 3j0a_A 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210 (844)
T ss_dssp ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB
T ss_pred CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEe
Confidence 99999855454556899999999999999988777777665 77777777777777666655555444 77777
Q ss_pred cccCcCCCCCCcccC------------------------------------C--CCCCCeEEccCCccccCCcccccCCC
Q 045598 150 LNNNSLSGKIPRWLG------------------------------------N--LTRLQCIIMPNNHLEGPIPVEFCQLD 191 (536)
Q Consensus 150 l~~n~~~~~~~~~~~------------------------------------~--l~~L~~L~l~~n~~~~~~~~~~~~l~ 191 (536)
+++|.+.+..+..+. . .++|++|++++|.+.+..+..|..++
T Consensus 211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 290 (844)
T 3j0a_A 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290 (844)
T ss_dssp CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred cCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC
Confidence 777655433332221 1 14566777777766666666666677
Q ss_pred CCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEc
Q 045598 192 LLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLIL 270 (536)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 270 (536)
+|+.|++++|.+.+..+..+ .+.+|+.|++++|.+.+. .+..|..+++|+.|++++|.+.+..+..|..+++|+.|++
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 77777777777766655544 456677777777766433 2333666677777777777666555556666666666666
Q ss_pred cccccccc------------------cc----------------------ccccCCCCCCEEecCCCcCCCCCCcc-ccc
Q 045598 271 GHNNLEGE------------------VP----------------------IQLCELNQLQLLDLSNNNLHGPIPSC-FDN 309 (536)
Q Consensus 271 ~~n~l~~~------------------~~----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~ 309 (536)
++|.+++. +| ..+..+++|+.|++++|++++..+.. +..
T Consensus 370 s~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred CCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 66665421 11 11335677777777777776544331 111
Q ss_pred cchhhhccccceeEEeeccceeee-------ccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccc
Q 045598 310 TTLHEKKQIREKFEFTTKNIAYIY-------QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPST 382 (536)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 382 (536)
. .....+.+..+.+.... ....+++|++|++++|.+++..|..|.++++|++|+|++|++++..+..
T Consensus 450 ~------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 450 N------PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp C------TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred C------CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 1 11223334433332111 1134689999999999999999999999999999999999999877777
Q ss_pred ccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCC
Q 045598 383 FSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 383 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 428 (536)
+. ++|+.|+|++|++++..|..+ .+|+.|++++|++.+..+
T Consensus 524 ~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 524 LP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred hh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 66 899999999999998888765 579999999999998654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-44 Score=373.78 Aligned_cols=430 Identities=18% Similarity=0.157 Sum_probs=285.4
Q ss_pred EeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcC
Q 045598 3 SLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82 (536)
Q Consensus 3 ~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 82 (536)
|.+++.++ .+|..+. ++|++|++++|.+++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.+
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 55666665 5665543 78888888888888555555544 78888888888888887778888888888888888888
Q ss_pred ccccchhHhhCCCCCCEEEcccCccCcc-CCccccCCCCCCEEEccCCc-CcccCCcCCCCCCccCeeecccCcCCCCCC
Q 045598 83 TGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNFNLTNLKWLQLEGSR-FVGEIPQSLSKCSSLEGLYLNNNSLSGKIP 160 (536)
Q Consensus 83 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 160 (536)
+ .++...++++++|++|++++|.+++. .+..+.++++|++|++++|. +....+..+.++++|++|++++|.+.+..|
T Consensus 87 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp C-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 8 56666557888888888888888763 34677888888888888887 443444678888888888888888887777
Q ss_pred cccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCC---C-CCCCCCccEEEccCCCCC---------
Q 045598 161 RWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP---S-CFHPLSIKQVHLSKNMLH--------- 227 (536)
Q Consensus 161 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~-~~~~~~L~~L~l~~n~~~--------- 227 (536)
..+..+++|++|+++.|.+.......+..+++|+.|++++|++.+... . .....+|+.|++.+|.+.
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 788888888888887777654333334557777777777777765321 0 011223333333332221
Q ss_pred -------------------Cccc--------------------------c--------cccCCCCCccEEEccCCcCCCc
Q 045598 228 -------------------GQLK--------------------------R--------GTFFNCSSLVTLDLSYNRLNGS 254 (536)
Q Consensus 228 -------------------~~~~--------------------------~--------~~~~~~~~L~~L~L~~n~l~~~ 254 (536)
+... . ..+...++|+.|++++|.+...
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 1000 0 0001123566666666666532
Q ss_pred cchhhhCCCCccEEEccccccccccc---ccccCCCCCCEEecCCCcCCCCCC--ccccccchhhhccccceeEEeeccc
Q 045598 255 ISDWVDGLSQLSHLILGHNNLEGEVP---IQLCELNQLQLLDLSNNNLHGPIP--SCFDNTTLHEKKQIREKFEFTTKNI 329 (536)
Q Consensus 255 ~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (536)
....+..+++|++|++++|.+++..| ..+..+++|++|++++|++++..+ ..+.... ....+.+..+.+
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~------~L~~L~Ls~N~l 399 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK------NLTSLDISRNTF 399 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT------TCCEEECTTCCC
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC------CCCEEECCCCCC
Confidence 22223456666666666666665443 225556666666666666654321 1121111 011122222222
Q ss_pred eeeec-cccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhh
Q 045598 330 AYIYQ-GKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV 408 (536)
Q Consensus 330 ~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 408 (536)
..++. ...+++|++|++++|.++. +|..+. ++|++|++++|++++. ...+++|++|+|++|+++ .+|. ..
T Consensus 400 ~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 400 HPMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp CCCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred ccCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cc
Confidence 22221 1225678888888888763 333332 5788888888888754 257899999999999998 5665 46
Q ss_pred CCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 409 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 409 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
.+++|+.|++++|++++..|..+..+++++.+++.+|||.|+|+
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 79999999999999999999989999999999999999999997
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=377.78 Aligned_cols=428 Identities=20% Similarity=0.208 Sum_probs=301.1
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+||+++|+++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 4899999998 6787665 89999999999999 455444445899999999999999888999999999999999999
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCcc-CCccccCCCCCCEEEccCCcCcccCCcCCCCCCcc--CeeecccCcC--
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL--EGLYLNNNSL-- 155 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~~-- 155 (536)
+++ .+|.. .+++|++|++++|.+++. .+..+.++++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 999 88876 799999999999999874 56889999999999999999875 356777777 9999999988
Q ss_pred CCCCCcccCC--------------------------CCCCCeEEccCCc-------cccCCcccccCCCCCCEEEccCCc
Q 045598 156 SGKIPRWLGN--------------------------LTRLQCIIMPNNH-------LEGPIPVEFCQLDLLQILDISDNN 202 (536)
Q Consensus 156 ~~~~~~~~~~--------------------------l~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~l~~n~ 202 (536)
.+..|..+.. +++|+.+++++|. +.+..+ .+..+++|+.|++++|.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 5556655554 4555666666554 332222 45556666666665555
Q ss_pred CcccCCCC----CCCCCccEEEccCCCCCCccccccc----CCCCCccEEEccCCcCCCccc-hhhhCC---CCccEEEc
Q 045598 203 ISGSLPSC----FHPLSIKQVHLSKNMLHGQLKRGTF----FNCSSLVTLDLSYNRLNGSIS-DWVDGL---SQLSHLIL 270 (536)
Q Consensus 203 ~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L 270 (536)
+.+..... ....+|+.|++++|.+.+.++...+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 44321110 1134677777777776666665522 5666666666666665 222 222222 33444444
Q ss_pred ccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeec----cccccccceEEc
Q 045598 271 GHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ----GKVLSLLSGLDL 346 (536)
Q Consensus 271 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~~L~l 346 (536)
++|.+.... .+..+++|++|++++|.+++..|..+...... ..+.+..+.+..++. ...+++|++|++
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL------ETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC------CEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC------CEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 444443211 01334444444444444444444333322111 111122222211110 123789999999
Q ss_pred cCCcCcCCCcc-cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598 347 SCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 347 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 425 (536)
++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence 99999985554 588899999999999999877776654 79999999999999 777777799999999999999995
Q ss_pred cCCCCccccccCCccccccCcCCCCCCC
Q 045598 426 EIPEWTAQFATFNESSYEGNTFLCGLPL 453 (536)
Q Consensus 426 ~~~~~~~~~~~l~~l~l~~n~~~c~~~l 453 (536)
..+..+..+++++.+++.+||+.|+|+.
T Consensus 459 l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 459 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 4444477899999999999999999875
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-43 Score=376.69 Aligned_cols=437 Identities=20% Similarity=0.189 Sum_probs=292.4
Q ss_pred CCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEE
Q 045598 21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFL 100 (536)
Q Consensus 21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 100 (536)
+++++|||++|+++ .+|...+..+++|++|+|++|.+++..+.+|.++++|++|+|++|+++ .+|...|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 35666666666666 444443344666666666666666655566666666666666666666 5565555666666666
Q ss_pred EcccCccCccCCccccCCCCCCEEEccCCcCccc-CCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCC----eEEcc
Q 045598 101 ALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE-IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ----CIIMP 175 (536)
Q Consensus 101 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~ 175 (536)
++++|.+++..+..|.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..+..+..+.+++ .++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 6666666665555666666666666666666542 345556666666666666665544333332221111 11111
Q ss_pred CCccccC-------------------------------------------------------------------------
Q 045598 176 NNHLEGP------------------------------------------------------------------------- 182 (536)
Q Consensus 176 ~n~~~~~------------------------------------------------------------------------- 182 (536)
.|.+...
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 1111100
Q ss_pred ------------------------------CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccc
Q 045598 183 ------------------------------IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 232 (536)
Q Consensus 183 ------------------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 232 (536)
....+....+++.|++.+|.+..... .....++.+.+..|.......
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~- 366 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS- 366 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEEEESCCSCCBCC-
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc--ccchhhhhcccccccCCCCcc-
Confidence 00112334456777777776654333 245678888888877643322
Q ss_pred cccCCCCCccEEEccCCcCCC--ccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCc-cccc
Q 045598 233 GTFFNCSSLVTLDLSYNRLNG--SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPS-CFDN 309 (536)
Q Consensus 233 ~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~ 309 (536)
...+++|+.+++++|.+.. ..+..+..+.+|+.+++..+... ..+..+..+++|+.++++.+......+. .+..
T Consensus 367 --~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 367 --EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp --CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred --cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccc
Confidence 4567888999999888753 33455666778888888888776 3445567778888888877765544332 2222
Q ss_pred cchhhhccccceeEEeeccceeeecc--ccccccceEEccCCcC-cCCCcccccCCCCCCEEeCCCccCCCCCcccccCC
Q 045598 310 TTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKL-IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNL 386 (536)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 386 (536)
... ........+.+.....+ ..++.+++|++++|.+ .+..|..|..+++|++|+|++|++++..|..|.++
T Consensus 444 l~~------l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 444 LRN------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp CTT------CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccc------cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 111 11122222222222211 3368899999999975 44578899999999999999999999999999999
Q ss_pred CCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc-ccCCccccccCcCCCCCCCC-----------
Q 045598 387 KYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPLP----------- 454 (536)
Q Consensus 387 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~l~~n~~~c~~~l~----------- 454 (536)
++|++|+|++|+++++.+..|.++++|+.|++++|++++..|..+..+ ++++.+++++|||.|+|++.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999988887 68999999999999999753
Q ss_pred --------CCCCCCCCCcccCCCCc
Q 045598 455 --------ICRSPATMSEASIGNER 471 (536)
Q Consensus 455 --------~C~~~~~~~~~~~~~~~ 471 (536)
.|..|...+|+++..++
T Consensus 598 ~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 598 LLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp TBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred ccCCCCCceeCCchHHCCCEeeeec
Confidence 59999999998877664
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.5e-43 Score=356.17 Aligned_cols=381 Identities=22% Similarity=0.235 Sum_probs=278.6
Q ss_pred cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL 102 (536)
Q Consensus 23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 102 (536)
-+.++.++++++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 457888888888 7886 3 3689999999999998888999999999999999999876777777788999999999
Q ss_pred ccCccCccCCccccCCCCCCEEEccCCcCcccCCc--CCCCCCccCeeecccCcCCCCCCcc-cCCCCCCCeEEccCCcc
Q 045598 103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ--SLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQCIIMPNNHL 179 (536)
Q Consensus 103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~ 179 (536)
++|.+++..+..+.++++|++|++++|.+.+..+. .+.++++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99999988888999999999999999998864443 4888999999999999998776765 78899999999999998
Q ss_pred ccCCcccccCC--CCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch
Q 045598 180 EGPIPVEFCQL--DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD 257 (536)
Q Consensus 180 ~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 257 (536)
.+..+..+..+ .+|+.|++++|.+.+..+..... .. ...+..+++|++|++++|.+.+..+.
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EK-CGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HH-HCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred cccChhhhhccccccccccccccCcccccchhhccc---------------cc-cccccccceeeeEecCCCcccccchh
Confidence 88777777655 67888888888877554332210 00 00122334555555555555544444
Q ss_pred hhhCC---CCccEEEccccccccc----------cccccc--CCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598 258 WVDGL---SQLSHLILGHNNLEGE----------VPIQLC--ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322 (536)
Q Consensus 258 ~~~~l---~~L~~L~L~~n~l~~~----------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (536)
.+... ++|+.|++++|...+. .+..+. ..++|+.|++++|.+++..|..+..
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------------- 297 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH------------- 297 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-------------
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-------------
Confidence 43332 4555555555533221 111111 2356777777777777666665544
Q ss_pred EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK 402 (536)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 402 (536)
+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus 298 ---------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 298 ---------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp ---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred ---------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence 55777777777777766677777777777777777777766677777777777777777777777
Q ss_pred CchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 403 IPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 403 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
.|..+..+++|+.|++++|++++..+..+..+++++.+++++||+.|+|+
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 77777777777777777777776666666677777777777777777776
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.7e-43 Score=373.31 Aligned_cols=396 Identities=18% Similarity=0.224 Sum_probs=323.6
Q ss_pred CCcCEEEccCCcCcccCChhHhhcCCCCcEEEc-cCCCCccc--------------------------------------
Q 045598 21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNN-SMNALDGS-------------------------------------- 61 (536)
Q Consensus 21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l-~~n~~~~~-------------------------------------- 61 (536)
.+++.|+|+++++.|.+|..+.. +++|+.|+| +.|.++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999999999998887 899999999 66644332
Q ss_pred --------------------------------------CCccCCCCCCCCEEEccCCcCcc-----------------cc
Q 045598 62 --------------------------------------IPSSFGNMKFLQFLDLSNNHLTG-----------------EI 86 (536)
Q Consensus 62 --------------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 86 (536)
+|..|+++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 67788999999999999999985 28
Q ss_pred chhH-hhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCc-Ccc-cCCcCCC-------CCCccCeeecccCcCC
Q 045598 87 PEHL-AVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSR-FVG-EIPQSLS-------KCSSLEGLYLNNNSLS 156 (536)
Q Consensus 87 ~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~-------~l~~L~~L~l~~n~~~ 156 (536)
|..+ |.++++|++|+|++|.+.+..|..+.++++|++|++++|+ +++ .+|..+. .+++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 8776 3489999999999999888888889999999999999998 776 5665444 4459999999999998
Q ss_pred CCCCc--ccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCC-ccEEEccCCCCCCccccc
Q 045598 157 GKIPR--WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRG 233 (536)
Q Consensus 157 ~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~ 233 (536)
.+|. .+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+...+.....+.+ |+.|++++|.+. .++..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 7787 8999999999999999998 556 888999999999999999844444456777 999999999986 56543
Q ss_pred ccCCCC--CccEEEccCCcCCCccchhh---h--CCCCccEEEccccccccccccc-ccCCCCCCEEecCCCcCCCCCCc
Q 045598 234 TFFNCS--SLVTLDLSYNRLNGSISDWV---D--GLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPS 305 (536)
Q Consensus 234 ~~~~~~--~L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~ 305 (536)
+...+ +|+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.++..++.
T Consensus 638 -~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 638 -FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp -CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred -hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 55554 49999999999987655432 2 2458999999999998 45544 55889999999999998844443
Q ss_pred cccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCccccc--CCCCCCEEeCCCccCCCCCcccc
Q 045598 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG--NLTRIQTLNLSHNNLTGSIPSTF 383 (536)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 383 (536)
.+.... +....+++|++|++++|.++ .+|..+. .+++|+.|+|++|++++ +|..+
T Consensus 716 ~~~~~~---------------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 716 SLKPKD---------------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp SSSCTT---------------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred Hhcccc---------------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence 332210 00011458999999999999 6777776 89999999999999997 68889
Q ss_pred cCCCCCCEEeCCC------CcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCC
Q 045598 384 SNLKYVESLDLSN------NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449 (536)
Q Consensus 384 ~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c 449 (536)
..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|..+. ++++.+++++|++..
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 9999999999976 788889999999999999999999999 67888754 699999999999764
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=363.77 Aligned_cols=393 Identities=22% Similarity=0.251 Sum_probs=317.8
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|.+.+..+..+.++++|++|++++|.++ .+|...+..+++|++|++++|.+++..+..++++++|++|++++|
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC
Confidence 4899999999888888999999999999999998 455444445899999999999998766667999999999999999
Q ss_pred cCcc-ccchhHhhCCCCCCEEEcccCccCccCCccccCCCCC----CEEEccCCcCcccCCcCC----------------
Q 045598 81 HLTG-EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL----KWLQLEGSRFVGEIPQSL---------------- 139 (536)
Q Consensus 81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~---------------- 139 (536)
.+++ .+|..+ +++++|++|++++|.++...+..+..+++| +.|++++|.+.+..+..+
T Consensus 135 ~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 213 (570)
T 2z63_A 135 LIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213 (570)
T ss_dssp CCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred ccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccc
Confidence 9884 357665 789999999999999988777777766666 677777776665444433
Q ss_pred -----------------------------------------------------------------CCCCccCeeecccCc
Q 045598 140 -----------------------------------------------------------------SKCSSLEGLYLNNNS 154 (536)
Q Consensus 140 -----------------------------------------------------------------~~l~~L~~L~l~~n~ 154 (536)
..+++|+.|++++|.
T Consensus 214 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp TTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred ccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence 334555555555555
Q ss_pred CCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccc-cc
Q 045598 155 LSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK-RG 233 (536)
Q Consensus 155 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~ 233 (536)
+. .+|..+..+ +|++|++++|.+.. .|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... +.
T Consensus 294 l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 294 IE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp EC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEH
T ss_pred ch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccc
Confidence 54 344445555 66666666665552 222 3566777777777776655444 567899999999999864321 23
Q ss_pred ccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccc-ccccCCCCCCEEecCCCcCCCCCCccccccch
Q 045598 234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTL 312 (536)
Q Consensus 234 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 312 (536)
.+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--- 443 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--- 443 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---
T ss_pred cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---
Confidence 377899999999999999865555 8899999999999999987665 56889999999999999999888877765
Q ss_pred hhhccccceeEEeeccceeeeccccccccceEEccCCcCc-CCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCE
Q 045598 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVES 391 (536)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 391 (536)
+++|++|++++|.+. +..|..+..+++|++|++++|++++..|..|..+++|++
T Consensus 444 -------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 444 -------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp -------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 679999999999997 578899999999999999999999888999999999999
Q ss_pred EeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCC
Q 045598 392 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430 (536)
Q Consensus 392 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 430 (536)
|++++|++++..+..+..+++|+.|++++|++++..|..
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999888888999999999999999999987753
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-42 Score=360.75 Aligned_cols=409 Identities=23% Similarity=0.216 Sum_probs=289.1
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
++|+++|++++ +|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 37888888874 676553 78999999999988 455444445889999999999998888888999999999999999
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCccC-CccccCCCCCCEEEccCCcCcccCCcCCCCCCcc--CeeecccCcC--
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHM-FSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL--EGLYLNNNSL-- 155 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~~-- 155 (536)
+++ .+|.. .+++|++|++++|.+++.. +..+.++++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 988 78865 6889999999999988754 46888899999999999888753 34555555 8899988888
Q ss_pred CCCCCcccCCC--------------------------CCCCeEEccCCccc----cCCcccccCCCCCCEEEccCCcCcc
Q 045598 156 SGKIPRWLGNL--------------------------TRLQCIIMPNNHLE----GPIPVEFCQLDLLQILDISDNNISG 205 (536)
Q Consensus 156 ~~~~~~~~~~l--------------------------~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~~~~ 205 (536)
.+..+..+..+ ++|+.+++++|+.. ......+..+++|+.++++++.+.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 66666555443 33444444443200 0001122233333333333322221
Q ss_pred cC----CCCCCCCCccEEEccCCCCCCccccccc----CCC--------------------------CCccEEEccCCcC
Q 045598 206 SL----PSCFHPLSIKQVHLSKNMLHGQLKRGTF----FNC--------------------------SSLVTLDLSYNRL 251 (536)
Q Consensus 206 ~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~--------------------------~~L~~L~L~~n~l 251 (536)
.. +......+|+.|++++|.+.+.++...| ..+ .+|++|++++|.+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 00 0011223666666666666555554422 222 3466666666655
Q ss_pred CCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCC--CccccccchhhhccccceeEEeeccc
Q 045598 252 NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI--PSCFDNTTLHEKKQIREKFEFTTKNI 329 (536)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (536)
.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++.. |..+..
T Consensus 344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------------- 401 (562)
T 3a79_B 344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-------------------- 401 (562)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--------------------
T ss_pred cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--------------------
Confidence 4221 1146778888888888888777777888888888888888777532 222322
Q ss_pred eeeeccccccccceEEccCCcCcCCCc-ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhh
Q 045598 330 AYIYQGKVLSLLSGLDLSCNKLIGPIP-LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV 408 (536)
Q Consensus 330 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 408 (536)
+++|++|++++|.+++.+| ..+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+.
T Consensus 402 --------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~ 470 (562)
T 3a79_B 402 --------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT 470 (562)
T ss_dssp --------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT
T ss_pred --------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc
Confidence 6799999999999998444 5688999999999999999876665544 79999999999999 6666666
Q ss_pred CCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598 409 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 453 (536)
Q Consensus 409 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l 453 (536)
.+++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+.
T Consensus 471 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999999999999954444488899999999999999999865
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-42 Score=364.54 Aligned_cols=392 Identities=19% Similarity=0.268 Sum_probs=256.1
Q ss_pred cccccccCCCCcCCCCCcCEEEccCCcCccc-----------------CChhHh-hcCCCCcEEEccCCCCcccCCccCC
Q 045598 6 NDSLGGPFRLPIHSHKRLGMLDISNNNFRGH-----------------IPVEIA-DVLPSLYAFNNSMNALDGSIPSSFG 67 (536)
Q Consensus 6 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~-----------------~p~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 67 (536)
+|++++ +|..+.++++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 455665 666666667777777776666653 666555 1256666666666666666666666
Q ss_pred CCCCCCEEEccCCc-Ccc-ccchhHhhCC------CCCCEEEcccCccCccCCc--cccCCCCCCEEEccCCcCcccCCc
Q 045598 68 NMKFLQFLDLSNNH-LTG-EIPEHLAVGC------VNLRFLALSNNNLQGHMFS--RNFNLTNLKWLQLEGSRFVGEIPQ 137 (536)
Q Consensus 68 ~l~~L~~L~L~~n~-l~~-~~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~ 137 (536)
++++|++|++++|+ +++ .+|..+ +.+ ++|++|++++|.++ ..+. .+.++++|++|++++|.+.+.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred cCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 66666666666666 665 566555 233 66666666666666 3444 56666666666666666665555
Q ss_pred CCCCCCccCeeecccCcCCCCCCcccCCCCC-CCeEEccCCccccCCcccccCCC--CCCEEEccCCcCcccCCCCCCCC
Q 045598 138 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR-LQCIIMPNNHLEGPIPVEFCQLD--LLQILDISDNNISGSLPSCFHPL 214 (536)
Q Consensus 138 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~ 214 (536)
.+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ ..|..+.... +|+.|++++|.+.+..|..+..
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 424 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP- 424 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT-
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc-
Confidence 5666666666666666665 45555556665 666666666655 3444444333 5555555555555443322210
Q ss_pred CccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccc-cccCC-------
Q 045598 215 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI-QLCEL------- 286 (536)
Q Consensus 215 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l------- 286 (536)
.... ...+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|. .+...
T Consensus 425 ---------------~~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 425 ---------------LDPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNT 487 (636)
T ss_dssp ---------------TCSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTG
T ss_pred ---------------cccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccccc
Confidence 0000 115668888888888888655566677888899999988888 4443 33333
Q ss_pred CCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCC
Q 045598 287 NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ 366 (536)
Q Consensus 287 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 366 (536)
++|+.|++++|.++ .+|..+... .+++|++|++++|.+++ +|..+..+++|+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~--------------------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRAT--------------------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTT--------------------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred CCccEEECcCCcCC-ccChhhhhc--------------------------cCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 28999999999888 444444300 16789999999999987 788888899999
Q ss_pred EEeC------CCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccc--cCC
Q 045598 367 TLNL------SHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA--TFN 438 (536)
Q Consensus 367 ~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~ 438 (536)
+|+| ++|++.+..|..+..+++|++|+|++|++. .+|..+. ++|+.|++++|++.......+.... ...
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ 616 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMY 616 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccc
Confidence 9999 567788889999999999999999999995 6777655 8999999999999875554443322 122
Q ss_pred ccccccCcCCCCCC
Q 045598 439 ESSYEGNTFLCGLP 452 (536)
Q Consensus 439 ~l~l~~n~~~c~~~ 452 (536)
.+.+......++|+
T Consensus 617 ~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 617 MLFYDKTQDIRGCD 630 (636)
T ss_dssp EEECCTTSEEESCG
T ss_pred eeecCCccccCCCc
Confidence 33333444555654
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.8e-42 Score=356.60 Aligned_cols=411 Identities=20% Similarity=0.176 Sum_probs=303.7
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..|+++++|++|++++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 489999999988888999999999999999999955555555 4899999999999999877777999999999999999
Q ss_pred cCcc-ccchhHhhCCCCCCEEEcccCc-cCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC
Q 045598 81 HLTG-EIPEHLAVGCVNLRFLALSNNN-LQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK 158 (536)
Q Consensus 81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 158 (536)
.+++ ..|. .++.+++|++|++++|. +....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+...
T Consensus 109 ~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 109 PYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred cccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 9983 2333 34789999999999998 5555567889999999999999999988888888888888888887776532
Q ss_pred CCcccCCCCCCCeEEccCCccccCC--c-c----------------------------cccCCCCCCEEEccCCcCcccC
Q 045598 159 IPRWLGNLTRLQCIIMPNNHLEGPI--P-V----------------------------EFCQLDLLQILDISDNNISGSL 207 (536)
Q Consensus 159 ~~~~~~~l~~L~~L~l~~n~~~~~~--~-~----------------------------~~~~l~~L~~L~l~~n~~~~~~ 207 (536)
....+..+++|++|++++|++.+.. + . .+..+++|+.+++++|.+.+..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 2222345677777777777766431 1 1 1122334444444444333211
Q ss_pred CC----------C--------------------------CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcC
Q 045598 208 PS----------C--------------------------FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251 (536)
Q Consensus 208 ~~----------~--------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l 251 (536)
.. . ....+|+.+++++|.+. .++...+..+++|++|++++|.+
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence 00 0 01246788888888874 56655446788888888888888
Q ss_pred CCccch---hhhCCCCccEEEccccccccccc--ccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEee
Q 045598 252 NGSISD---WVDGLSQLSHLILGHNNLEGEVP--IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTT 326 (536)
Q Consensus 252 ~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (536)
.+..+. .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++++ +|..+..... ...+.+..
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~------L~~L~Ls~ 419 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEK------MRFLNLSS 419 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTT------CCEEECTT
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhccccc------ccEEECCC
Confidence 765532 35677888888888888875432 457778888888888888874 4444433221 12233333
Q ss_pred ccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchh
Q 045598 327 KNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ 406 (536)
Q Consensus 327 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 406 (536)
+.+..++. ..+++|++|++++|.+++.. ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|..
T Consensus 420 N~l~~l~~-~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 420 TGIRVVKT-CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp SCCSCCCT-TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred CCcccccc-hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence 33332221 22468999999999998643 57899999999999999 4555 467899999999999999988999
Q ss_pred hhCCCCCCEEEccCCcCcccCC
Q 045598 407 LVELKTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 407 ~~~l~~L~~L~l~~N~l~~~~~ 428 (536)
+..+++|+.|++++|++.+..|
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 9999999999999999998766
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-40 Score=336.15 Aligned_cols=379 Identities=20% Similarity=0.179 Sum_probs=299.7
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCccc-CCccCCCCCCCCEEEccCC
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS-IPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n 80 (536)
++.++++++ .+|. + .++|++|++++|.+++..|..+.. +++|++|++++|.+.+. .+.+|.++++|++|++++|
T Consensus 15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 345556665 5554 2 378999999999999655666655 89999999999998744 4678999999999999999
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCccCC--ccccCCCCCCEEEccCCcCcccCCcC-CCCCCccCeeecccCcCCC
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMF--SRNFNLTNLKWLQLEGSRFVGEIPQS-LSKCSSLEGLYLNNNSLSG 157 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~ 157 (536)
.+++..|.. ++++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+
T Consensus 90 ~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 998444544 4789999999999999986433 34889999999999999999877765 8899999999999999988
Q ss_pred CCCcccCCC--CCCCeEEccCCccccCCcccc--------cCCCCCCEEEccCCcCcccCCCCC----CCCCccEEEccC
Q 045598 158 KIPRWLGNL--TRLQCIIMPNNHLEGPIPVEF--------CQLDLLQILDISDNNISGSLPSCF----HPLSIKQVHLSK 223 (536)
Q Consensus 158 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~--------~~l~~L~~L~l~~n~~~~~~~~~~----~~~~L~~L~l~~ 223 (536)
..+..+..+ .+|+.+++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+ ...+++.+++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 888777766 789999999999886554432 345678888888887765443322 234566666665
Q ss_pred CCCCCcccccccCCCCCccEEEccCCcCCCccchhhhC--CCCccEEEcccccccccccccccCCCCCCEEecCCCcCCC
Q 045598 224 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG--LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG 301 (536)
Q Consensus 224 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 301 (536)
|...+... ..+.+.+..+..+.. .++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 249 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 249 SYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp CTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cccccccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 54432110 011111111222222 3689999999999998888889999999999999999988
Q ss_pred CCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc
Q 045598 302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS 381 (536)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 381 (536)
..+..+.. +++|++|++++|.+++..+..+..+++|++|+|++|++++..|.
T Consensus 314 ~~~~~~~~----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 314 IDDNAFWG----------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp ECTTTTTT----------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cChhHhcC----------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 77777655 67899999999999888889999999999999999999988899
Q ss_pred cccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCC
Q 045598 382 TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429 (536)
Q Consensus 382 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 429 (536)
.|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999987777889999999999999999998874
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=344.79 Aligned_cols=384 Identities=23% Similarity=0.237 Sum_probs=297.0
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|.+.+..|..+..+++|++|++++|++++..|..+.. +++|++|++++|.++. +|.. .+++|++|++++|
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSS
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCceee-cCcc--ccCCccEEeccCC
Confidence 4899999999877788999999999999999999555666655 8999999999999984 5554 8999999999999
Q ss_pred cCcc-ccchhHhhCCCCCCEEEcccCccCccCCccccCCCCC--CEEEccCCcC--cccCCcCCCC--------------
Q 045598 81 HLTG-EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL--KWLQLEGSRF--VGEIPQSLSK-------------- 141 (536)
Q Consensus 81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~-------------- 141 (536)
.+++ .+|..+ +.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 101 ~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 101 AFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp CCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred ccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 9984 355555 789999999999999986 345667777 9999999988 5555554444
Q ss_pred ------------CCccCeeecccCc-------CCCCCCcccCCCC---------------------------CCCeEEcc
Q 045598 142 ------------CSSLEGLYLNNNS-------LSGKIPRWLGNLT---------------------------RLQCIIMP 175 (536)
Q Consensus 142 ------------l~~L~~L~l~~n~-------~~~~~~~~~~~l~---------------------------~L~~L~l~ 175 (536)
+++|+.+++++|. +.+..+ .+..++ +|++|+++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 6677777777765 222222 334444 45555555
Q ss_pred CCccccCCcccc-----cCCCCCCEEEccCCcCcccCCCCC----CCCCccEEEccCCCCCCcccccccCCCCCccEEEc
Q 045598 176 NNHLEGPIPVEF-----CQLDLLQILDISDNNISGSLPSCF----HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 246 (536)
Q Consensus 176 ~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 246 (536)
+|.+.+..|..+ ..+++|+.+++++|.+ ......+ ...+++.|++++|.+.... .+..+++|++|++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L 331 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDF 331 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEEC
T ss_pred cccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEe
Confidence 565555555555 5566666666666665 1111111 1245778888887764321 1268899999999
Q ss_pred cCCcCCCccchhhhCCCCccEEEcccccccc--cccccccCCCCCCEEecCCCcCCCCCCc-cccccchhhhccccceeE
Q 045598 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEG--EVPIQLCELNQLQLLDLSNNNLHGPIPS-CFDNTTLHEKKQIREKFE 323 (536)
Q Consensus 247 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~ 323 (536)
++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|++|++++|.+++..|. .+..
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~-------------- 397 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW-------------- 397 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc--------------
Confidence 9999998888889999999999999999986 4567789999999999999999874443 2332
Q ss_pred EeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC
Q 045598 324 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403 (536)
Q Consensus 324 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 403 (536)
+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++.+.
T Consensus 398 --------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 398 --------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp --------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred --------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence 67899999999999887777665 79999999999999 67777779999999999999999544
Q ss_pred chhhhCCCCCCEEEccCCcCcccCC
Q 045598 404 PHQLVELKTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 404 ~~~~~~l~~L~~L~l~~N~l~~~~~ 428 (536)
+..+..+++|+.|++++|++++..+
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhccCCcccEEECcCCCCcccCC
Confidence 4458999999999999999998544
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=330.95 Aligned_cols=323 Identities=20% Similarity=0.185 Sum_probs=164.8
Q ss_pred EEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccC
Q 045598 74 FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNN 153 (536)
Q Consensus 74 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 153 (536)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4444444444 444432 234555555555555554555555555555555555555554555555555555555555
Q ss_pred cCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccc
Q 045598 154 SLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 233 (536)
Q Consensus 154 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 233 (536)
.+....+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+ .
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~ 146 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH------------------------R 146 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT------------------------T
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh------------------------h
Confidence 5554333445555555555555555555555555555555555555555543222 1
Q ss_pred ccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchh
Q 045598 234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313 (536)
Q Consensus 234 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 313 (536)
.|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.....
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---- 222 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---- 222 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT----
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc----
Confidence 2444445555555555554444444455555555555555555444444555555555555554433322221111
Q ss_pred hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEe
Q 045598 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393 (536)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (536)
..+|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+
T Consensus 223 ------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 223 ------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp ------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred ------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence 12455555555555543334455555555555555555544444555555555555
Q ss_pred CCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 394 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
|++|++++..+..|.++++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 55555555555555555555555555555555444444445555555555555555553
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.7e-38 Score=329.77 Aligned_cols=385 Identities=22% Similarity=0.228 Sum_probs=300.3
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 80 (536)
+|||++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|.. .+++|++|++++|
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N 131 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFN 131 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSS
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCC
Confidence 4899999999888889999999999999999999555655554 899999999999998 45655 8999999999999
Q ss_pred cCccccch-hHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcC--cccCCcCCCC----------------
Q 045598 81 HLTGEIPE-HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF--VGEIPQSLSK---------------- 141 (536)
Q Consensus 81 ~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~---------------- 141 (536)
+++ .++. ..++++++|++|++++|.++......+..+ +|++|++++|.+ .+..|..+..
T Consensus 132 ~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 209 (562)
T 3a79_B 132 DFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209 (562)
T ss_dssp CCS-BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred Ccc-ccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence 998 5542 344799999999999999986443333333 449999999988 5555554443
Q ss_pred ----------CCccCeeecccCcCC----------------------------C----CCCcccCCCCCCCeEEccCCcc
Q 045598 142 ----------CSSLEGLYLNNNSLS----------------------------G----KIPRWLGNLTRLQCIIMPNNHL 179 (536)
Q Consensus 142 ----------l~~L~~L~l~~n~~~----------------------------~----~~~~~~~~l~~L~~L~l~~n~~ 179 (536)
+++|+.+++++|... + ..+.. ...++|++|++++|.+
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEE
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEe
Confidence 456667777665310 0 00000 1124899999999999
Q ss_pred ccCCcccc-----cCCCCCCEEEccCCcCcccCC-CC----CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 045598 180 EGPIPVEF-----CQLDLLQILDISDNNISGSLP-SC----FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 249 (536)
Q Consensus 180 ~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 249 (536)
.+..|..+ ..++.|+.+++..+.+ ..| .. +...+++.|++++|.+.... ....+++|++|++++|
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSS
T ss_pred eccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCC
Confidence 87777766 5666666666666665 122 11 12357999999999874322 1368899999999999
Q ss_pred cCCCccchhhhCCCCccEEEcccccccc--cccccccCCCCCCEEecCCCcCCCCCCc-cccccchhhhccccceeEEee
Q 045598 250 RLNGSISDWVDGLSQLSHLILGHNNLEG--EVPIQLCELNQLQLLDLSNNNLHGPIPS-CFDNTTLHEKKQIREKFEFTT 326 (536)
Q Consensus 250 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 326 (536)
.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|. .+..
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----------------- 426 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW----------------- 426 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-----------------
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-----------------
Confidence 9998889999999999999999999986 3356789999999999999999984443 3433
Q ss_pred ccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchh
Q 045598 327 KNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ 406 (536)
Q Consensus 327 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 406 (536)
+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|+|++|+++.+.+..
T Consensus 427 -----------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~ 492 (562)
T 3a79_B 427 -----------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492 (562)
T ss_dssp -----------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred -----------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 67899999999999877776554 79999999999999 56666669999999999999999544444
Q ss_pred hhCCCCCCEEEccCCcCcccCC
Q 045598 407 LVELKTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 407 ~~~l~~L~~L~l~~N~l~~~~~ 428 (536)
+..+++|+.|++++|++.+..+
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHH
T ss_pred HhcCCCCCEEEecCCCcCCCcc
Confidence 8999999999999999998654
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=322.22 Aligned_cols=321 Identities=21% Similarity=0.207 Sum_probs=239.8
Q ss_pred cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL 102 (536)
Q Consensus 23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 102 (536)
-+.++.++++++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 467888888888 7887665 48899999999999888888999999999999999988 554444578899999999
Q ss_pred ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598 103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP 182 (536)
Q Consensus 103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 182 (536)
++|.++......+.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99999887777788889999999999988877788888888899999988888877777888888888888888888877
Q ss_pred CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCC
Q 045598 183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL 262 (536)
Q Consensus 183 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 262 (536)
.+..+..+++|+.|++++|.+.+. +...|..+++|++|++++|...+.++......
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccC
Confidence 777788888888888888776532 22236677888888888877766665555555
Q ss_pred CCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccc
Q 045598 263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS 342 (536)
Q Consensus 263 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 342 (536)
.+|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+.. +++|+
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------------l~~L~ 275 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE----------------------------LLRLQ 275 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT----------------------------CTTCC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc----------------------------cccCC
Confidence 67888888888777544456777777777777777766555444433 44566
Q ss_pred eEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598 343 GLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400 (536)
Q Consensus 343 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 400 (536)
+|++++|.+.+..|..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++.
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 6666666666555556666666666666666666555555555666666666666554
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.4e-37 Score=310.48 Aligned_cols=346 Identities=26% Similarity=0.351 Sum_probs=259.3
Q ss_pred CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCC
Q 045598 19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLR 98 (536)
Q Consensus 19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 98 (536)
.+++++.|+++++.+. .+|. + ..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~-~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG-V-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc-h-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCC
Confidence 3578888888888887 5664 3 347888999998888886543 888888999999888888 5554 47888899
Q ss_pred EEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCc
Q 045598 99 FLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178 (536)
Q Consensus 99 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 178 (536)
+|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+.|+++ +.+.+. ..+..+++|++|++++|.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 99998888876543 77888889999888887753 247888888888886 344422 237788888888888888
Q ss_pred cccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchh
Q 045598 179 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258 (536)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 258 (536)
+.+. ..+..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh--
Confidence 8754 347788888888888888876544 3456778888888887753 22 36777888888888888875544
Q ss_pred hhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccc
Q 045598 259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVL 338 (536)
Q Consensus 259 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (536)
+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +.. +
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~----------------------------l 308 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN----------------------------L 308 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG----------------------------C
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC----------------------------C
Confidence 6777888888888888875433 7778888888888887775433 221 5
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 418 (536)
++|++|++++|.+++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 678888888888876555 66778888888888888754 467778888888888888876665 677888888888
Q ss_pred cCCcCcc
Q 045598 419 AYNNLSG 425 (536)
Q Consensus 419 ~~N~l~~ 425 (536)
++|++++
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 8888775
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-36 Score=319.97 Aligned_cols=423 Identities=20% Similarity=0.186 Sum_probs=321.5
Q ss_pred CCCCcCCCC---CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchh
Q 045598 13 FRLPIHSHK---RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEH 89 (536)
Q Consensus 13 ~~~~~~~~~---~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 89 (536)
+|.+...|. .-+..+.++.+++ ++|..+.. ++++|+|++|.++...+.+|.++++|++|+|++|+++ .+++.
T Consensus 20 ~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~lp~---~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~ 94 (635)
T 4g8a_A 20 IPESWEPCVEVVPNITYQCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG 94 (635)
T ss_dssp -----CCSEEEETTTEEECTTSCCS-SCCSSSCT---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTT
T ss_pred CCCCCCCccccCCCCEEECCCCCcC-ccCCCCCc---CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChh
Confidence 454444442 2356788888888 89987754 8999999999999888889999999999999999999 88888
Q ss_pred HhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCC-CCCcccCCCCC
Q 045598 90 LAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTR 168 (536)
Q Consensus 90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~ 168 (536)
.|.++++|++|+|++|+++...+..|.++++|++|++++|++.+..+..|+++++|++|++++|.+.. ..|..+..+++
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence 78999999999999999999888899999999999999999998877889999999999999999875 35778889999
Q ss_pred CCeEEccCCccccCCcccccCCCCC----CEEEccCCcCcccCCCCCCC-------------------------------
Q 045598 169 LQCIIMPNNHLEGPIPVEFCQLDLL----QILDISDNNISGSLPSCFHP------------------------------- 213 (536)
Q Consensus 169 L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l~~n~~~~~~~~~~~~------------------------------- 213 (536)
|++|++++|++++..+..+..+.++ ..++++.|.+....+..+..
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 9999999999987777666543322 24455554443222211111
Q ss_pred -------------------------------------------------------------------------CCccEEE
Q 045598 214 -------------------------------------------------------------------------LSIKQVH 220 (536)
Q Consensus 214 -------------------------------------------------------------------------~~L~~L~ 220 (536)
..++.++
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 334 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 334 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhh
Confidence 1223333
Q ss_pred ccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccc--cccccccCCCCCCEEecCCCc
Q 045598 221 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG--EVPIQLCELNQLQLLDLSNNN 298 (536)
Q Consensus 221 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 298 (536)
+.++.+.+ ++ ...++.|+.+++..|.+.... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.
T Consensus 335 l~~~~~~~-~~---~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 335 LVNCKFGQ-FP---TLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp EESCEESS-CC---CCBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred cccccccC-cC---cccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 33333321 11 235678999999999876432 34468999999999998863 355667788999999999988
Q ss_pred CCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-C
Q 045598 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-G 377 (536)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~ 377 (536)
.....+. +..........+....... .........+.+++.++++.|.+.+..+..+..+++|+.|++++|.+. +
T Consensus 409 ~~~~~~~-~~~l~~L~~l~l~~~~~~~---~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 409 VITMSSN-FLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp EEEECSC-CTTCTTCCEEECTTSEEES---TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ccccccc-ccccccccchhhhhccccc---cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 7654332 2222211111111100000 000111234678999999999999989999999999999999999754 4
Q ss_pred CCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598 378 SIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450 (536)
Q Consensus 378 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~ 450 (536)
..|+.|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..|..+..+++++.+++++|....-
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 5788999999999999999999999999999999999999999999999898888999999999999987653
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.9e-36 Score=305.87 Aligned_cols=345 Identities=26% Similarity=0.324 Sum_probs=296.2
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598 45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL 124 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 124 (536)
+++++.|+++++.+.. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3589999999999874 44 4888999999999999998 6665 5799999999999999987654 8899999999
Q ss_pred EccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598 125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
++++|.+.+..+ +.++++|++|++++|.+.+ .+ .+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 999999986533 8999999999999999875 33 58899999999997 445433 34889999999999999987
Q ss_pred ccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc
Q 045598 205 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC 284 (536)
Q Consensus 205 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 284 (536)
+. +....+++|+.|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI-SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC-hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 54 344577899999999999875544 67789999999999999854 457889999999999999986554 88
Q ss_pred CCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC
Q 045598 285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR 364 (536)
Q Consensus 285 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 364 (536)
.+++|+.|++++|.+++..+ +.. +++|++|++++|.+.+..+ +..+++
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~----------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAG----------------------------LTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTT----------------------------CTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred cCCCCCEEECCCCccCcccc--ccC----------------------------CCccCeEEcCCCcccCchh--hcCCCC
Confidence 99999999999999886544 322 6799999999999987554 788999
Q ss_pred CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCcccccc
Q 045598 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEG 444 (536)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~ 444 (536)
|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++++.+++.+
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 9999999999997765 78999999999999999865 468899999999999999998887 67899999999999
Q ss_pred CcCCC
Q 045598 445 NTFLC 449 (536)
Q Consensus 445 n~~~c 449 (536)
|++..
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 99876
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-36 Score=306.70 Aligned_cols=368 Identities=25% Similarity=0.291 Sum_probs=234.6
Q ss_pred CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCC-------------CCcEEEccCCCCcccCCccCC
Q 045598 1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLP-------------SLYAFNNSMNALDGSIPSSFG 67 (536)
Q Consensus 1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~-------------~L~~L~l~~n~~~~~~~~~~~ 67 (536)
+|++++|++ +.+|..++++++|++|++++|.+.|.+|..++. ++ +++.|++++|.+++ +|..
T Consensus 15 ~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~-- 89 (454)
T 1jl5_A 15 EPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL-- 89 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCC-CHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC--
T ss_pred hhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccccc-chhcchhhhhhhhccCCCEEEecCCcccc-CCCC--
Confidence 478889999 799999999999999999999998888887765 33 35999999999885 3432
Q ss_pred CCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCe
Q 045598 68 NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEG 147 (536)
Q Consensus 68 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 147 (536)
.++|++|++++|.++ .+|. ..++|++|++++|.+++.... .++|++|++++|.+.+ +| .+.++++|++
T Consensus 90 -~~~L~~L~l~~n~l~-~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 -PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp -CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred -cCCCCEEEccCCcCC-cccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 378999999999998 5774 347899999999988854321 2689999999999986 55 5899999999
Q ss_pred eecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCC
Q 045598 148 LYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 227 (536)
Q Consensus 148 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 227 (536)
|++++|.+.+ +|..+ ++|++|++++|++.+. | .+..+++|+.|++++|.+++... . ..+|+.|++++|.+.
T Consensus 158 L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~-~--~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPD-L--PLSLESIVAGNNILE 228 (454)
T ss_dssp EECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCC-C--CTTCCEEECCSSCCS
T ss_pred EECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCC-C--cCcccEEECcCCcCC
Confidence 9999999884 55433 5899999999999863 4 68899999999999999886432 2 258999999999886
Q ss_pred CcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598 228 GQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF 307 (536)
Q Consensus 228 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 307 (536)
.++. +..+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|+.|++++|.+++... ..
T Consensus 229 -~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~-~~ 296 (454)
T 1jl5_A 229 -ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE-LP 296 (454)
T ss_dssp -SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC-CC
T ss_pred -cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC-cC
Confidence 5653 8889999999999999885 343 24789999999999885 5543 4789999999998876221 10
Q ss_pred cccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCC
Q 045598 308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 387 (536)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 387 (536)
.. ...+.+..+.+..++. .+++|++|++++|.+++ +|.. +++|++|++++|.+++ +|. .++
T Consensus 297 ~~---------L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~ 357 (454)
T 1jl5_A 297 PN---------LYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQ 357 (454)
T ss_dssp TT---------CCEEECCSSCCSEECC--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred Cc---------CCEEECcCCcCCcccC--CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhh
Confidence 00 1111222222222111 12355666666665553 3322 3556666666666553 333 245
Q ss_pred CCCEEeCCCCcccc--cCchhhhCC-------------CCCCEEEccCCcCcc
Q 045598 388 YVESLDLSNNKLNG--KIPHQLVEL-------------KTLEVFSVAYNNLSG 425 (536)
Q Consensus 388 ~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~N~l~~ 425 (536)
+|++|++++|++++ .+|..+..+ ++|+.|++++|++++
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 56666666666655 445555444 455555555555554
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-36 Score=298.10 Aligned_cols=334 Identities=22% Similarity=0.212 Sum_probs=186.7
Q ss_pred CCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCee
Q 045598 69 MKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGL 148 (536)
Q Consensus 69 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 148 (536)
++++++|+++++.++ .+|..++..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467777777777776 6676666677777777777777776666677777777777777777776666667777777777
Q ss_pred ecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598 149 YLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 228 (536)
Q Consensus 149 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 228 (536)
++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. ....++|+.+++++|.+.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence 77777776444444567777777777777777666666777777777777777665431 1223344444444444321
Q ss_pred cccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598 229 QLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD 308 (536)
Q Consensus 229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 308 (536)
+...++|++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+.
T Consensus 201 ------~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 201 ------LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp ------EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ------cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 11223455555555555432 111 124455555555555422 2344455555555555555444343333
Q ss_pred ccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCC
Q 045598 309 NTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKY 388 (536)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 388 (536)
. +++|++|++++|.+++ .+..+..+++|++|++++|++. .+|..+..+++
T Consensus 270 ~----------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 270 K----------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319 (390)
T ss_dssp T----------------------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred c----------------------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence 2 3445555555555443 2333444555555555555555 23444555555
Q ss_pred CCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCC
Q 045598 389 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL 451 (536)
Q Consensus 389 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~ 451 (536)
|++|++++|+++.. + +..+++|+.|++++|++.+.... ..+..+....+.+++..|.+
T Consensus 320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred CCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceecc
Confidence 56666665555533 1 34455555566666555543211 11233334444455555543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-35 Score=299.09 Aligned_cols=357 Identities=18% Similarity=0.131 Sum_probs=256.7
Q ss_pred cccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchh
Q 045598 10 GGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEH 89 (536)
Q Consensus 10 ~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 89 (536)
.+..+.++..+++|++|++++|.++ .+| .+. .+++|++|++++|.+++. + ++++++|++|++++|.++ .++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--
T ss_pred CcccccChhHcCCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--
Confidence 3344456778899999999999998 456 444 488999999999999864 3 889999999999999998 555
Q ss_pred HhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCC
Q 045598 90 LAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 169 (536)
Q Consensus 90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 169 (536)
++.+++|++|++++|.+++.. +..+++|++|++++|.+.+. .+..+++|++|++++|...+.. .+..+++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred -cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 478999999999999998742 78889999999999998864 3788899999999999654344 47788999
Q ss_pred CeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 045598 170 QCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 249 (536)
Q Consensus 170 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 249 (536)
++|++++|++++. + +..+++|+.|++++|.+++. ....+++|+.|++++|.+.+ ++ +..+++|+.|++++|
T Consensus 173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCC
Confidence 9999999999864 3 77889999999999998865 34467889999999998875 44 678889999999999
Q ss_pred cCCCccchhhhCCC-------CccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598 250 RLNGSISDWVDGLS-------QLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322 (536)
Q Consensus 250 ~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (536)
.+++..+..+..+. +|+.|++++|...+.+| +..+++|+.|++++|...+..|.........
T Consensus 244 ~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L--------- 312 (457)
T 3bz5_A 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL--------- 312 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC---------
T ss_pred cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe---------
Confidence 98876544433332 34445555555444444 4567788888888887655544322111100
Q ss_pred EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK 402 (536)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 402 (536)
. ....++|++|++++|.+++. .++.+++|+.|++++|++++ ++.|+.|++++|.+.+.
T Consensus 313 ----------~-l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 313 ----------D-LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp ----------C-CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred ----------c-hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence 0 01135666677777666653 26666667777777666664 23455556666666543
Q ss_pred CchhhhCCCCCCEEEccCCcCcccCCCCc
Q 045598 403 IPHQLVELKTLEVFSVAYNNLSGEIPEWT 431 (536)
Q Consensus 403 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 431 (536)
..+..|..+++++|+++|.+|..+
T Consensus 371 -----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 371 -----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred -----ceeeecCccccccCcEEEEcChhH
Confidence 234556777888888888777643
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.3e-35 Score=294.30 Aligned_cols=373 Identities=23% Similarity=0.258 Sum_probs=263.4
Q ss_pred CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCC-------------CEEEccCCcCccc
Q 045598 19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFL-------------QFLDLSNNHLTGE 85 (536)
Q Consensus 19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~ 85 (536)
..+.|++|++++|.+ +.+|..+.. +++|++|++++|.+.+..|..++++++| ++|++++|.++ .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 358899999999999 699999876 8999999999999999999999998865 99999999998 6
Q ss_pred cchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCC
Q 045598 86 IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 165 (536)
Q Consensus 86 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 165 (536)
+|. ..++|++|++++|.+++. +. ..++|++|++++|.+.+. +.. .++|++|++++|.+.+ +| .++.
T Consensus 86 lp~----~~~~L~~L~l~~n~l~~l-p~---~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 86 LPE----LPPHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CCS----CCTTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCC----CcCCCCEEEccCCcCCcc-cc---ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 775 247999999999999974 33 248999999999998853 221 2689999999999985 66 5999
Q ss_pred CCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEE
Q 045598 166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 245 (536)
Q Consensus 166 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 245 (536)
+++|++|++++|++++ .|.. ..+|++|++++|.+++. +....+++|+.|++++|.+.+ ++.. .++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCc-CCCC----cCcccEEE
Confidence 9999999999999985 3433 35999999999999874 556688999999999999864 4332 25999999
Q ss_pred ccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEe
Q 045598 246 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFT 325 (536)
Q Consensus 246 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (536)
+++|.+. .+|. +..+++|++|++++|++++ +|.. +++|+.|++++|.+++. |..... ...+.+.
T Consensus 222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~~~~~---------L~~L~ls 285 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL-PELPQS---------LTFLDVS 285 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC-CCCCTT---------CCEEECC
T ss_pred CcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc-CcccCc---------CCEEECc
Confidence 9999998 5564 8889999999999999985 4442 48999999999999863 332211 2233333
Q ss_pred eccceeeeccccccccceEEccCCcCcCCCcccccCC-CCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCc
Q 045598 326 TKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNL-TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP 404 (536)
Q Consensus 326 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 404 (536)
.+.+..++. .+++|++|++++|.+++. + .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|
T Consensus 286 ~N~l~~l~~--~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp 353 (454)
T 1jl5_A 286 ENIFSGLSE--LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP 353 (454)
T ss_dssp SSCCSEESC--CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCC
T ss_pred CCccCcccC--cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-ccc
Confidence 443433322 246899999999988752 2 23 589999999999986 4443 588999999999998 455
Q ss_pred hhhhCCCCCCEEEccCCcCcc--cCCCCcccc-------------ccCCccccccCcCCC
Q 045598 405 HQLVELKTLEVFSVAYNNLSG--EIPEWTAQF-------------ATFNESSYEGNTFLC 449 (536)
Q Consensus 405 ~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~-------------~~l~~l~l~~n~~~c 449 (536)
. .+++|+.|++++|++++ .+|..+..+ ++++.+++++|++..
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 5 47899999999999998 778877776 678888888888765
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-35 Score=305.38 Aligned_cols=334 Identities=22% Similarity=0.208 Sum_probs=206.2
Q ss_pred CCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCee
Q 045598 69 MKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGL 148 (536)
Q Consensus 69 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 148 (536)
+++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456677777777766 6666666667777777777777776666667777777777777777776666666777777777
Q ss_pred ecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598 149 YLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 228 (536)
Q Consensus 149 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 228 (536)
++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++.. ...+++|+.+++++|.+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 77777776544445567777777777777777666666777777777777777666432 2234455555555554432
Q ss_pred cccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598 229 QLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD 308 (536)
Q Consensus 229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 308 (536)
+...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+.
T Consensus 207 ------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 207 ------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp ------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 223345666666666665322211 2456666666666653 24455666666666666666655555444
Q ss_pred ccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCC
Q 045598 309 NTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKY 388 (536)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 388 (536)
. +++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus 276 ~----------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~ 325 (597)
T 3oja_B 276 K----------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325 (597)
T ss_dssp T----------------------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred C----------------------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC
Confidence 3 4556666666666654 3444555677777777777776 35555666777
Q ss_pred CCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCC
Q 045598 389 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL 451 (536)
Q Consensus 389 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~ 451 (536)
|+.|+|++|++++.. +..+++|+.|++++|++.+..... .+..+....+.+++..|..
T Consensus 326 L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 326 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCCCCCT
T ss_pred CCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH--HHHHHhhhccccccccCCc
Confidence 777777777766432 445667777777777776543211 2334444455566666654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.9e-34 Score=283.81 Aligned_cols=311 Identities=22% Similarity=0.239 Sum_probs=223.1
Q ss_pred CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598 20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99 (536)
Q Consensus 20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 99 (536)
+++++.|+++++.+. .+|..++..+++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...++.+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 467777777777776 677766666777777777777777666667777777777777777777 555454467777777
Q ss_pred EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179 (536)
Q Consensus 100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 179 (536)
|++++|.++......+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+. .+..+++|+++++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777765555566777777777777777666666677777777777777766543 234456666666666655
Q ss_pred ccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598 180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259 (536)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 259 (536)
.+ +...++|+.|++++|.+... +. ...++|+.|++++|.+++. .++
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~------------------------~~---~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV------------------------RG---PVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE------------------------EC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec------------------------cc---cccccccEEECCCCCCccc--HHH
Confidence 42 12234555565555555422 22 1236788888888888754 567
Q ss_pred hCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc
Q 045598 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS 339 (536)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (536)
..+++|++|++++|.+++..|..+..+++|+.|++++|++++... .+. .++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~----------------------------~l~ 295 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQ----------------------------PIP 295 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSS----------------------------CCT
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccC----------------------------CCC
Confidence 788889999999998887778888888999999999888775322 111 167
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK 402 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 402 (536)
+|++|++++|.+. .+|..+..+++|++|++++|++++. + +..+++|++|++++|++.+.
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 8999999999888 4566678899999999999999854 2 67889999999999999764
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-33 Score=276.70 Aligned_cols=304 Identities=23% Similarity=0.318 Sum_probs=151.1
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598 45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL 124 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 124 (536)
+++|+.|+++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 3455555555555542 22 2455555555555555555 3333 34555555555555555432 234455555555
Q ss_pred EccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598 125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
++++|.+.+.. . +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCch-h-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 55555544322 1 445555555555555333222 224455555555555555443222 444445555555544443
Q ss_pred ccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc
Q 045598 205 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC 284 (536)
Q Consensus 205 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 284 (536)
+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +.
T Consensus 191 ~~------------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 DI------------------------SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CC------------------------GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred cc------------------------cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 11 11 4445556666666665554322 4555566666666665553322 55
Q ss_pred CCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC
Q 045598 285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR 364 (536)
Q Consensus 285 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 364 (536)
.+++|++|++++|.+++. ..+.. +++|++|++++|.+++. ..+..+++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~----------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~ 288 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKD----------------------------LTKLKMLNVGSNQISDI--SVLNNLSQ 288 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTT----------------------------CTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred cCCCCCEEECCCCccCCC--hhHhc----------------------------CCCcCEEEccCCccCCC--hhhcCCCC
Confidence 556666666666555432 11111 34555555555555532 23555556
Q ss_pred CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 424 (536)
|++|++++|++++..+..+..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 6666666665555555555555666666666666554433 455556666666665543
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-33 Score=284.65 Aligned_cols=353 Identities=19% Similarity=0.185 Sum_probs=260.8
Q ss_pred CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCC
Q 045598 33 FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMF 112 (536)
Q Consensus 33 ~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (536)
..+..+..+.. +++|+.|++++|.+++. | .+..+++|++|++++|.++ .+| ++.+++|++|++++|.+++.
T Consensus 30 ~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-- 100 (457)
T 3bz5_A 30 MQATDTISEEQ-LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-- 100 (457)
T ss_dssp CCTTSEEEHHH-HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC--
T ss_pred cCcccccChhH-cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee--
Confidence 33344445554 78999999999999864 4 6899999999999999998 565 47899999999999999875
Q ss_pred ccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCC
Q 045598 113 SRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL 192 (536)
Q Consensus 113 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 192 (536)
.+.++++|++|++++|++.+. + +..+++|++|++++|.+.+. .++.+++|++|++++|...+.. .+..+++
T Consensus 101 -~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 101 -DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred -ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 278899999999999998864 3 88999999999999999864 3788999999999999544333 4778899
Q ss_pred CCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccc
Q 045598 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272 (536)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 272 (536)
|+.|++++|++++.. ....++|+.|++++|.+.+. .+..+++|++|++++|++++ +| +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 999999999998753 45678899999999988653 27788999999999999986 44 77889999999999
Q ss_pred ccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCc
Q 045598 273 NNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 352 (536)
Q Consensus 273 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 352 (536)
|++++.. +..+++|+.|++++|.+....-..-.. ...++ ...+++|+.|++++|...
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~-------------------~~~~~-~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQ-------------------LIYFQ-AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTT-------------------CCEEE-CTTCTTCCCCCCTTCTTC
T ss_pred CcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCcc-------------------CCccc-ccccccCCEEECCCCccc
Confidence 9998643 445677777777776654321110000 00011 122577888888888765
Q ss_pred CCCcc--------cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598 353 GPIPL--------QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 353 ~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 424 (536)
+.+|. .+.++++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|.+.
T Consensus 300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE 368 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred ceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence 54443 245566777777777777763 26777777777777777764 245566667777777
Q ss_pred ccCCCCccccccCCccccccCcCCCCC
Q 045598 425 GEIPEWTAQFATFNESSYEGNTFLCGL 451 (536)
Q Consensus 425 ~~~~~~~~~~~~l~~l~l~~n~~~c~~ 451 (536)
+. ..+..+..++++.|.+....
T Consensus 369 g~-----~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 369 AE-----GQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp EE-----EEEEECCCBCCBTTBEEEEC
T ss_pred ec-----ceeeecCccccccCcEEEEc
Confidence 64 24556677777777765443
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-33 Score=271.58 Aligned_cols=307 Identities=21% Similarity=0.338 Sum_probs=248.7
Q ss_pred cCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCc
Q 045598 65 SFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSS 144 (536)
Q Consensus 65 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 144 (536)
.+..+++|++|+++++.++ .++. +..+++|++|++++|.++...+ +..+++|++|++++|.+... ..+.++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 3567788999999998887 6664 3678889999999888876544 77888888888888887753 35778888
Q ss_pred cCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCC
Q 045598 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 224 (536)
Q Consensus 145 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 224 (536)
|++|++++|.+.+. +. +..+++|++|++++|..... ...+..+++|+.|++++|.+.+.
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~------------------ 170 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDV------------------ 170 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCC------------------
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCc------------------
Confidence 88888888887743 32 77788888888888754433 33467777777777777766522
Q ss_pred CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP 304 (536)
Q Consensus 225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 304 (536)
+. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+
T Consensus 171 ------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 171 ------TP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp ------GG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred ------hh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 11 6788999999999999986543 7889999999999999985544 8889999999999999886544
Q ss_pred ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccccc
Q 045598 305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS 384 (536)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 384 (536)
+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+.
T Consensus 239 --~~~----------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~ 284 (347)
T 4fmz_A 239 --LAN----------------------------LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLN 284 (347)
T ss_dssp --GTT----------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred --hhc----------------------------CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhc
Confidence 322 67999999999999864 4688999999999999999965 5689
Q ss_pred CCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcC
Q 045598 385 NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 447 (536)
Q Consensus 385 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~ 447 (536)
.+++|++|++++|++++..+..+..+++|+.|++++|++++..| +..+++++.+++.+|+.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 99999999999999999999999999999999999999998777 67899999999999985
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.9e-33 Score=291.58 Aligned_cols=311 Identities=22% Similarity=0.244 Sum_probs=211.5
Q ss_pred CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598 20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99 (536)
Q Consensus 20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 99 (536)
+++++.++++++.+. .+|..++..+++|+.|++++|.+++..+.+|.++++|++|++++|.++ .++...++++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 356666666666665 566665555666666666666666665666666666666666666666 444444456666666
Q ss_pred EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179 (536)
Q Consensus 100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 179 (536)
|++++|.++...+..+.++++|++|++++|.+.+..|..|.++++|+.|++++|.+.+. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 66666666655555556666666666666666655555666666666666666666533 133455566666666555
Q ss_pred ccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598 180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259 (536)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 259 (536)
.+ +...++|+.|++++|.+.. ++.. ..++|+.|++++|.+++ +.++
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~------------------------~~~~---~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINV------------------------VRGP---VNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCE------------------------EECS---CCSCCCEEECCSSCCCC--CGGG
T ss_pred cc-----ccCCchhheeeccCCcccc------------------------cccc---cCCCCCEEECCCCCCCC--Chhh
Confidence 42 2233445555555555432 2221 12578888888888875 3667
Q ss_pred hCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc
Q 045598 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS 339 (536)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (536)
..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++.. ..+.. ++
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~----------------------------l~ 301 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQP----------------------------IP 301 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSC----------------------------CT
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-ccccc----------------------------CC
Confidence 78888999999999888888888888899999999998887532 22211 67
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK 402 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 402 (536)
+|+.|++++|.+. .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|++.+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 8999999999888 56777888999999999999998652 67788999999999998754
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-34 Score=274.61 Aligned_cols=260 Identities=34% Similarity=0.567 Sum_probs=208.8
Q ss_pred CccCeeecccCcCCC--CCCcccCCCCCCCeEEccC-CccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEE
Q 045598 143 SSLEGLYLNNNSLSG--KIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV 219 (536)
Q Consensus 143 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 219 (536)
.+++.|++++|.+.+ ..|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------------- 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA------------- 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-------------
Confidence 356666666666665 5566666666677777663 666666666666777777777776666532
Q ss_pred EccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCC-CCCEEecCCCc
Q 045598 220 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN-QLQLLDLSNNN 298 (536)
Q Consensus 220 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 298 (536)
++.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.
T Consensus 117 ----------~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 117 ----------IPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ----------CCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ----------CCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 2222 66677888888888888777777788888888888888888877888888887 88888888888
Q ss_pred CCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCC
Q 045598 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378 (536)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 378 (536)
+++..|..+.. ++ |++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 186 l~~~~~~~~~~----------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 186 LTGKIPPTFAN----------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp EEEECCGGGGG----------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred eeccCChHHhC----------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 88777766654 33 88899999998888899999999999999999999976
Q ss_pred CcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCCCCC
Q 045598 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR 457 (536)
Q Consensus 379 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~~C~ 457 (536)
.+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++++.+++.+||+.|+.|++.|.
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCCC
Confidence 655 888999999999999999999999999999999999999999999987 78999999999999999998877663
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.6e-31 Score=259.50 Aligned_cols=292 Identities=22% Similarity=0.273 Sum_probs=197.5
Q ss_pred CCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeee
Q 045598 70 KFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLY 149 (536)
Q Consensus 70 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 149 (536)
.++++++++++.++ .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 35677777777776 666544 25677777777777766666677777777777777777766677777777777777
Q ss_pred cccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCc
Q 045598 150 LNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 229 (536)
Q Consensus 150 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 229 (536)
+++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... .
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~ 161 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------G 161 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------G
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------C
Confidence 7777776 3444333 6788888888877776666777778888888877776521 1
Q ss_pred ccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccc
Q 045598 230 LKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309 (536)
Q Consensus 230 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 309 (536)
.....+..+++|++|++++|.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 122235666777777777777764 33322 267777777777777666667777777777777777776655544433
Q ss_pred cchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccC----
Q 045598 310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSN---- 385 (536)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---- 385 (536)
+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 239 ----------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 239 ----------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp ----------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred ----------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 456777777777776 55666777778888888888877666665543
Q ss_pred --CCCCCEEeCCCCcccc--cCchhhhCCCCCCEEEccCCc
Q 045598 386 --LKYVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN 422 (536)
Q Consensus 386 --l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~N~ 422 (536)
.+.|+.|++++|.+.. +.|..|..+++++.+++++|+
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3667778888887753 556677777777777777774
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=8e-32 Score=261.68 Aligned_cols=290 Identities=22% Similarity=0.284 Sum_probs=188.6
Q ss_pred CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeec
Q 045598 71 FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL 150 (536)
Q Consensus 71 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 150 (536)
+++.++++++.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5667777777766 666544 256777777777777666666777777777777777777666667777777777777
Q ss_pred ccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcc
Q 045598 151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 230 (536)
Q Consensus 151 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 230 (536)
++|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.++.. ..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 777776 3444333 6777777777777766666677777777777777776521 01
Q ss_pred cccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccccc
Q 045598 231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT 310 (536)
Q Consensus 231 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 310 (536)
....+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~- 239 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF- 239 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence 11224444 66666666666664 232221 56677777777776655566667777777777777776655544433
Q ss_pred chhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCC----
Q 045598 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNL---- 386 (536)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---- 386 (536)
+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|...
T Consensus 240 ---------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 240 ---------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp ---------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred ---------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 456777777777666 456667777777777777777776655555442
Q ss_pred --CCCCEEeCCCCccc--ccCchhhhCCCCCCEEEccCCc
Q 045598 387 --KYVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNN 422 (536)
Q Consensus 387 --~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~N~ 422 (536)
++|+.|++++|.+. +..|.+|..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56777777777766 4566677777777777777764
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.8e-35 Score=301.36 Aligned_cols=363 Identities=19% Similarity=0.140 Sum_probs=211.4
Q ss_pred CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcc----cCCccCCCCCCCCEEEccCCcCccccchhHhhCCC
Q 045598 20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG----SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV 95 (536)
Q Consensus 20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 95 (536)
.++|++|+++++++++.....++..+++|+.|++++|.+++ .++..+..+++|++|++++|.+++..+..++..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35788999999998755555556668899999999998875 34567888899999999999887555556656666
Q ss_pred ----CCCEEEcccCccCcc----CCccccCCCCCCEEEccCCcCcccCCcC-----CCCCCccCeeecccCcCCCCC---
Q 045598 96 ----NLRFLALSNNNLQGH----MFSRNFNLTNLKWLQLEGSRFVGEIPQS-----LSKCSSLEGLYLNNNSLSGKI--- 159 (536)
Q Consensus 96 ----~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~l~~n~~~~~~--- 159 (536)
+|++|++++|.++.. .+..+..+++|++|++++|.+.+..+.. ....++|++|++++|.+.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 699999999988743 3566778888999999888876433222 223557888888888776533
Q ss_pred -CcccCCCCCCCeEEccCCccccCCccccc-----CCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccc
Q 045598 160 -PRWLGNLTRLQCIIMPNNHLEGPIPVEFC-----QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 233 (536)
Q Consensus 160 -~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 233 (536)
+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.++..... .++.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~- 221 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG- 221 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-
Confidence 34455667888888888877644333332 255777787777776532100 0111
Q ss_pred ccCCCCCccEEEccCCcCCCcc-----chhhhCCCCccEEEccccccccc----ccccccCCCCCCEEecCCCcCCCCCC
Q 045598 234 TFFNCSSLVTLDLSYNRLNGSI-----SDWVDGLSQLSHLILGHNNLEGE----VPIQLCELNQLQLLDLSNNNLHGPIP 304 (536)
Q Consensus 234 ~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~ 304 (536)
.+..+++|++|++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 1334455555555555444321 11112344555555555555432 23334445555555555554433222
Q ss_pred ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCC----CcccccCCCCCCEEeCCCccCCCCCc
Q 045598 305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP----IPLQIGNLTRIQTLNLSHNNLTGSIP 380 (536)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~ 380 (536)
..+...- ....++|++|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 302 ~~l~~~l-----------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 302 RLLCETL-----------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHHHH-----------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHHHHHh-----------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 1111100 00013455555555555433 23334445555555555555553322
Q ss_pred ccccC-----CCCCCEEeCCCCcccc----cCchhhhCCCCCCEEEccCCcCcc
Q 045598 381 STFSN-----LKYVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 381 ~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~ 425 (536)
..+.. .++|++|++++|++++ .++..+..+++|+.|++++|++++
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 22221 3455566666655553 444555555556666666655553
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.9e-31 Score=259.02 Aligned_cols=252 Identities=23% Similarity=0.271 Sum_probs=140.1
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
+++.++++++.++ .+|..++ ++++.|++++|.+++..+.+|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 4566666665555 5554443 35556666666555555555555666666666665555 33222234555555555
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 181 (536)
+++|.++..... +. ++|++|++++|.+....+..+.++++|+.|++++|.+.. .+
T Consensus 109 L~~n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~ 163 (332)
T 2ft3_A 109 ISKNHLVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG 163 (332)
T ss_dssp CCSSCCCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred CCCCcCCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence 555555532222 11 455555555555544433444445555555555554431 01
Q ss_pred CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhC
Q 045598 182 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261 (536)
Q Consensus 182 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 261 (536)
..+..+..+ +|+.|++++|.+++...... .+|+.|++++|.+.+ ++...+..+++|++|++++|.+.+..+..+..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 333344444 45555555555443222111 344444444444432 22233677778888888888887766667777
Q ss_pred CCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598 262 LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD 308 (536)
Q Consensus 262 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 308 (536)
+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 788888888888877 5666677778888888888877766655554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.9e-31 Score=257.54 Aligned_cols=295 Identities=21% Similarity=0.264 Sum_probs=154.9
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
+++.++++++.++ .+|..+. +.++.|++++|.+++..+..|.++++|++|++++|.++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 89 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------------ 89 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------------
Confidence 4555555555554 4444332 24455555555555444444555555555555555544
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 181 (536)
+..+..+.++++|++|++++|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 90 -------~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 90 -------KISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp -------CBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred -------eeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 4444444444455555555444442 222221 455555555555554444445555566666666555532
Q ss_pred --CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598 182 --PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259 (536)
Q Consensus 182 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 259 (536)
..+..+..+++|+.|++++|.++....... .+|+.|++++|.+.+ +....+..+++|++|++++|.+++..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 445556666666666666666653322111 344444444444432 222235666667777777766665555566
Q ss_pred hCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc
Q 045598 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS 339 (536)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (536)
..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|....
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~---------------------------- 287 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG---------------------------- 287 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS----------------------------
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc----------------------------
Confidence 66666677777666666 5555666666666666666666655544443210
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCC--CCcccccCCCCCCEEeCCCCc
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG--SIPSTFSNLKYVESLDLSNNK 398 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~ 398 (536)
.....+.++.|++++|++.. ..|..|..+++++.++|++|+
T Consensus 288 ------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 288 ------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ------------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 00113556666666666642 445666667777777777664
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.1e-34 Score=295.47 Aligned_cols=361 Identities=18% Similarity=0.145 Sum_probs=258.9
Q ss_pred CCCCcEEEccCCCCcccCCcc-CCCCCCCCEEEccCCcCccc----cchhHhhCCCCCCEEEcccCccCccCCccc-cCC
Q 045598 45 LPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNNHLTGE----IPEHLAVGCVNLRFLALSNNNLQGHMFSRN-FNL 118 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l 118 (536)
.++|+.|+++++.++...... +..+++|++|++++|.+++. ++.. +..+++|++|++++|.++......+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 357889999988887544333 77788999999999988732 2333 3677889999999988875433332 234
Q ss_pred C----CCCEEEccCCcCcc----cCCcCCCCCCccCeeecccCcCCCCCCccc-----CCCCCCCeEEccCCccccCC--
Q 045598 119 T----NLKWLQLEGSRFVG----EIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-----GNLTRLQCIIMPNNHLEGPI-- 183 (536)
Q Consensus 119 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~-- 183 (536)
+ +|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 68888888888774 346677888888888888888754333222 23457888888888777533
Q ss_pred --cccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc----cch
Q 045598 184 --PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS----ISD 257 (536)
Q Consensus 184 --~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~ 257 (536)
+..+..+++|++|++++|.+...... .+........++|++|++++|.+++. ++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~-------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVR-------------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHH-------------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHH-------------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 44455667788888877776532110 11111112456999999999999864 467
Q ss_pred hhhCCCCccEEEcccccccccc-----cccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceee
Q 045598 258 WVDGLSQLSHLILGHNNLEGEV-----PIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYI 332 (536)
Q Consensus 258 ~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (536)
.+..+++|++|++++|.+++.. +..+..+++|++|++++|.++......+...
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~---------------------- 279 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV---------------------- 279 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH----------------------
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH----------------------
Confidence 7788999999999999987543 2233468999999999998875321111100
Q ss_pred eccccccccceEEccCCcCcCCCcccccC-----CCCCCEEeCCCccCCCC----CcccccCCCCCCEEeCCCCcccccC
Q 045598 333 YQGKVLSLLSGLDLSCNKLIGPIPLQIGN-----LTRIQTLNLSHNNLTGS----IPSTFSNLKYVESLDLSNNKLNGKI 403 (536)
Q Consensus 333 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~ 403 (536)
...+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++++..
T Consensus 280 --l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 280 --LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp --HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred --HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 011578999999999987654444432 37999999999999865 4566778899999999999998765
Q ss_pred chhhhC-----CCCCCEEEccCCcCcc----cCCCCccccccCCccccccCcCCC
Q 045598 404 PHQLVE-----LKTLEVFSVAYNNLSG----EIPEWTAQFATFNESSYEGNTFLC 449 (536)
Q Consensus 404 ~~~~~~-----l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~l~l~~n~~~c 449 (536)
+..+.. .++|+.|++++|++++ .+|..+..+++++.+++.+|+...
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 555543 7899999999999996 677777788999999999998653
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.3e-31 Score=257.44 Aligned_cols=249 Identities=31% Similarity=0.492 Sum_probs=141.7
Q ss_pred CCCEEEccCCcCcc--cCCcCCCCCCccCeeeccc-CcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEE
Q 045598 120 NLKWLQLEGSRFVG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL 196 (536)
Q Consensus 120 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 196 (536)
+++.|+++++.+.+ ..|..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4444455555555555553 44444445555555555555555555554445555555555555
Q ss_pred EccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCC-CccEEEcccccc
Q 045598 197 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLS-QLSHLILGHNNL 275 (536)
Q Consensus 197 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 275 (536)
++++|.+.+..+ .. +..+++|++|++++|.+++..|..+..++ +|+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p-----------------------~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLP-----------------------PS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCC-----------------------GG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCC-----------------------hH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 555555442211 11 34444555555555555444444454444 555555555555
Q ss_pred cccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCC
Q 045598 276 EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI 355 (536)
Q Consensus 276 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 355 (536)
++..|..+..++ |+.|++++|.+++..|..+.. +++|++|++++|.+++..
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------------l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------------DKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------TSCCSEEECCSSEECCBG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------CCCCCEEECCCCceeeec
Confidence 555555555554 555555555555544444433 445566666666655444
Q ss_pred cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcC
Q 045598 356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423 (536)
Q Consensus 356 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 423 (536)
+. +..+++|++|++++|++++..|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 43 566777778888888777777777777788888888888877777765 6777788888888773
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=261.06 Aligned_cols=134 Identities=22% Similarity=0.332 Sum_probs=85.9
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
+++|++|++++|.++. +| .+..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus 184 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp CSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred ccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 3445555555555542 22 355566677777777776666666667777777777777777666666666777777777
Q ss_pred ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC------------------CCCCCCCCCcccCCCCcCc
Q 045598 418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP------------------ICRSPATMSEASIGNERDD 473 (536)
Q Consensus 418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~------------------~C~~~~~~~~~~~~~~~~~ 473 (536)
+++|++++..+..+..+++++.+++.+|||.|+|.+. .|..|...+++.+...+..
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~ 335 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQN 335 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----C
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhh
Confidence 7777777666666666677777777777777777542 4888888888766555443
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3.9e-30 Score=260.59 Aligned_cols=209 Identities=23% Similarity=0.252 Sum_probs=124.7
Q ss_pred cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCc-CCCCCCccccccchh
Q 045598 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN-LHGPIPSCFDNTTLH 313 (536)
Q Consensus 235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~ 313 (536)
|.++++|++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..+..
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~---- 194 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG---- 194 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT----
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC----
Confidence 4444444445554444444444444444555555555555544334444555555555555422 22222222222
Q ss_pred hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEe
Q 045598 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393 (536)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (536)
+++|++|++++|.+++. | .+..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus 195 ------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 195 ------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp ------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred ------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 34555555555555532 2 355667777777777777766677777777777777
Q ss_pred CCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC------------------C
Q 045598 394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP------------------I 455 (536)
Q Consensus 394 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~------------------~ 455 (536)
+++|++++..+..|.++++|+.|++++|++++..+..+..+++++.+++.+|||.|+|.+. .
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~ 328 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGR 328 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCB
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcE
Confidence 7777777666777777777777777777777666666666777777777777777777642 4
Q ss_pred CCCCCCCCcccCCCCcCc
Q 045598 456 CRSPATMSEASIGNERDD 473 (536)
Q Consensus 456 C~~~~~~~~~~~~~~~~~ 473 (536)
|..|...++..+...+..
T Consensus 329 C~~P~~l~g~~l~~~~~~ 346 (452)
T 3zyi_A 329 CHAPMHMRGRYLVEVDQA 346 (452)
T ss_dssp EEESTTTTTCBTTSCCGG
T ss_pred eCCchHhccchhhccchh
Confidence 778887777766555443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.5e-30 Score=247.21 Aligned_cols=247 Identities=23% Similarity=0.273 Sum_probs=115.7
Q ss_pred EEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC--CcccccCCCCCCEEEccC
Q 045598 123 WLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP--IPVEFCQLDLLQILDISD 200 (536)
Q Consensus 123 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~ 200 (536)
.++.+++.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555544 2233221 3555555555555533333345555555555555554421 123333444455555444
Q ss_pred CcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccc-hhhhCCCCccEEEcccccccccc
Q 045598 201 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEV 279 (536)
Q Consensus 201 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 279 (536)
|.+.. ++.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 88 n~i~~------------------------l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVIT------------------------MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEEE------------------------EEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred Ccccc------------------------Chhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 44331 1111 4455566666666665554333 34555555555555555555555
Q ss_pred cccccCCCCCCEEecCCCcCCC-CCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCccc
Q 045598 280 PIQLCELNQLQLLDLSNNNLHG-PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358 (536)
Q Consensus 280 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 358 (536)
+..+..+++|++|++++|.+++ ..|..+.. +++|++|++++|.+++..|..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------------l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------------LRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------CTTCCEEECTTSCCCEECTTT
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhh----------------------------CcCCCEEECCCCCcCCcCHHH
Confidence 5555555555555555555443 22322222 334444444444444444444
Q ss_pred ccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCC-CCCEEEccCCcCcc
Q 045598 359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSG 425 (536)
Q Consensus 359 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~ 425 (536)
+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|+.|++++|++++
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 44444444444444444443333444444444444444444444444444442 44444444444443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=247.51 Aligned_cols=210 Identities=23% Similarity=0.215 Sum_probs=143.7
Q ss_pred CCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC
Q 045598 67 GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE 146 (536)
Q Consensus 67 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 146 (536)
..++...+.+++++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.+.+..+..|.++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34455556777777777 7776552 5788888888888777666777788888888888877776667777777888
Q ss_pred eeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCc-ccccCCCCCCEEEccCCc-CcccCCCCCCCCCccEEEccCC
Q 045598 147 GLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIP-VEFCQLDLLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKN 224 (536)
Q Consensus 147 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n 224 (536)
+|++++|.+.+..+..+..+++|++|++++|++..... ..+..+++|+.|++++|. +.
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------------- 163 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-------------------- 163 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--------------------
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc--------------------
Confidence 88888777775444447777777777777777765444 456677777777777663 33
Q ss_pred CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP 304 (536)
Q Consensus 225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 304 (536)
.++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+
T Consensus 164 ----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 164 ----KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp ----EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred ----ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 2223336666777777777777776666777777777777777777764333334456777777777777665443
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.2e-29 Score=235.90 Aligned_cols=250 Identities=24% Similarity=0.271 Sum_probs=144.6
Q ss_pred CeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 045598 170 QCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 249 (536)
Q Consensus 170 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 249 (536)
++++.+++.++.+ |..+ .++++.|++++|.+++..+. .|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~------------------------~~~~~~~L~~L~l~~n 66 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAA------------------------SFRACRNLTILWLHSN 66 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTT------------------------TTTTCTTCCEEECCSS
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHH------------------------HcccCCCCCEEECCCC
Confidence 4566666666532 3222 34666666666666544333 3555555666666666
Q ss_pred cCCCccchhhhCCCCccEEEccccc-ccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeecc
Q 045598 250 RLNGSISDWVDGLSQLSHLILGHNN-LEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKN 328 (536)
Q Consensus 250 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (536)
.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..
T Consensus 67 ~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 127 (285)
T 1ozn_A 67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------------- 127 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------------
T ss_pred ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-------------------
Confidence 5555545555555666666666664 44444555555666666666666655554444433
Q ss_pred ceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhh
Q 045598 329 IAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV 408 (536)
Q Consensus 329 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 408 (536)
+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..+.
T Consensus 128 ---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 128 ---------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp ---------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ---------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 44566666666666555555555666666666666666654444566666666666666666655566666
Q ss_pred CCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcC
Q 045598 409 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERD 472 (536)
Q Consensus 409 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~ 472 (536)
.+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|+.. .|..|...++..+...+.
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~ 278 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence 6666666666666666544444555566666666666666666542 477787777776655554
Q ss_pred cc
Q 045598 473 DN 474 (536)
Q Consensus 473 ~~ 474 (536)
.+
T Consensus 279 ~~ 280 (285)
T 1ozn_A 279 ND 280 (285)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.7e-29 Score=242.42 Aligned_cols=280 Identities=19% Similarity=0.142 Sum_probs=164.3
Q ss_pred CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598 20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99 (536)
Q Consensus 20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 99 (536)
|+.....++++++++ .+|..++. +|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~~---~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCCT---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCcc-cccccccc---cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCE
Confidence 344444555555555 55554432 5556666665555544445555666666666665555 333333345555666
Q ss_pred EEcccCccCccCCccccCCCCCCEEEccCCcCcccCC-cCCCCCCccCeeecccC-cCCCCCCcccCCCCCCCeEEccCC
Q 045598 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP-QSLSKCSSLEGLYLNNN-SLSGKIPRWLGNLTRLQCIIMPNN 177 (536)
Q Consensus 100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n 177 (536)
|++++|.++...+..+.++++|++|++++|.+....+ ..+.++++|++|++++| .+....+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 6666665554444445555566666666655553332 24555556666666555 244333445555556666666666
Q ss_pred ccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCccccc--ccCCCCCccEEEccCCcCCC-
Q 045598 178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRG--TFFNCSSLVTLDLSYNRLNG- 253 (536)
Q Consensus 178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~L~~n~l~~- 253 (536)
.+.+..+..+..+++|++|++++|.+.......+ ..++|+.|++++|.+.+..... .....+.++.++++++.+.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 5555555555555566666666555543222222 2455666666665554322111 12345678888898888875
Q ss_pred ---ccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598 254 ---SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP 304 (536)
Q Consensus 254 ---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 304 (536)
.+|.++..+++|+.|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 356778899999999999999994444446899999999999999886544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2e-28 Score=234.89 Aligned_cols=279 Identities=22% Similarity=0.242 Sum_probs=222.3
Q ss_pred CCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC--CCcccCCCCCCCeEEc
Q 045598 97 LRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTRLQCIIM 174 (536)
Q Consensus 97 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l 174 (536)
-+.++.+++.++..+. .+. ++|++|++++|.+....+..|.++++|++|++++|.+... .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~-~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCS-CCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCC-CCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 3578888888886544 332 7899999999999966666789999999999999998733 2556678999999999
Q ss_pred cCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc
Q 045598 175 PNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 254 (536)
Q Consensus 175 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 254 (536)
++|.+.. .+..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+.
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCcc
Confidence 9999984 56678899999999999998874322 12367788999999999998878
Q ss_pred cchhhhCCCCccEEEcccccccc-cccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeee
Q 045598 255 ISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIY 333 (536)
Q Consensus 255 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (536)
.+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------ 197 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------ 197 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT------------------------
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC------------------------
Confidence 88888889999999999999886 57888899999999999999998877776654
Q ss_pred ccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCC-CCCEEeCCCCcccccCc--hhhhCC
Q 045598 334 QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK-YVESLDLSNNKLNGKIP--HQLVEL 410 (536)
Q Consensus 334 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~--~~~~~l 410 (536)
+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|++|++++|++++..+ .....+
T Consensus 198 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 198 ----LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp ----CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred ----CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 67899999999999987787899999999999999999998899999885 99999999999985432 111222
Q ss_pred CCCCEEEccCCcCcccCCCC
Q 045598 411 KTLEVFSVAYNNLSGEIPEW 430 (536)
Q Consensus 411 ~~L~~L~l~~N~l~~~~~~~ 430 (536)
...+.+.+..+.+.+..|..
T Consensus 274 ~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 274 KDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp HHTGGGBSCGGGCBEEESGG
T ss_pred HhhhhhhccccccccCCchh
Confidence 23333444455555544443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=237.72 Aligned_cols=248 Identities=24% Similarity=0.242 Sum_probs=186.2
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
..+.++.++.+++ .+|..++ ++++.|++++|.+++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 4677888888887 7887665 37888888888888777788888888888888888887 66666667888888888
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCc-CCCCCCcccCCCCCCCeEEccCCccc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLQCIIMPNNHLE 180 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 180 (536)
|++|.++...+..+..+++|++|++++|.+....+..|.++++|++|++++|. +....+..|..+++|++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 88888887777778888888888888888887766778888888888888743 44333446777777777777777776
Q ss_pred cCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260 (536)
Q Consensus 181 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 260 (536)
.. | .+..+++|+.|++++|++++.. +..|..+++|++|++++|.+++..+..|.
T Consensus 199 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 199 EI-P-NLTPLIKLDELDLSGNHLSAIR------------------------PGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp SC-C-CCTTCSSCCEEECTTSCCCEEC------------------------TTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred cc-c-ccCCCcccCEEECCCCccCccC------------------------hhhhccCccCCEEECCCCceeEEChhhhc
Confidence 33 2 3566667777777766665432 23366777778888888877777777777
Q ss_pred CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCC
Q 045598 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300 (536)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 300 (536)
.+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7778888888888877666666777788888888887765
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.7e-28 Score=227.97 Aligned_cols=225 Identities=23% Similarity=0.216 Sum_probs=154.3
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598 24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS 103 (536)
Q Consensus 24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 103 (536)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCCC---CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 67788877777 6776553 47888888888888766677888888888888888877 4433344677778888887
Q ss_pred cCc-cCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598 104 NNN-LQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP 182 (536)
Q Consensus 104 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 182 (536)
+|. ++...+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 776 6666666777777777777777777766666677777777777777777655555566667777777777766655
Q ss_pred CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCC
Q 045598 183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL 262 (536)
Q Consensus 183 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 262 (536)
.+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHP------------------------HAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECT------------------------TTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHHHhcCccccCEEECCCCcccccCH------------------------hHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 55556666666666666666553322 225566667777777777666555666666
Q ss_pred CCccEEEcccccccc
Q 045598 263 SQLSHLILGHNNLEG 277 (536)
Q Consensus 263 ~~L~~L~L~~n~l~~ 277 (536)
++|+.|++++|++..
T Consensus 225 ~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 225 RALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cccCEEeccCCCccC
Confidence 677777777766653
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.4e-30 Score=272.06 Aligned_cols=382 Identities=10% Similarity=0.032 Sum_probs=206.8
Q ss_pred CCCCcCEEEccCCcCcccCChhHhhcCCC-CcEEEccCCC-Ccc-cCCccCCCCCCCCEEEccCCcCccccc---hhHhh
Q 045598 19 SHKRLGMLDISNNNFRGHIPVEIADVLPS-LYAFNNSMNA-LDG-SIPSSFGNMKFLQFLDLSNNHLTGEIP---EHLAV 92 (536)
Q Consensus 19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~-L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~ 92 (536)
.+++|++|+++++.+.+..+..+...++. |++|++++|. ++. .++....++++|++|++++|.+++... ..+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45666666666666554444444443333 6666666554 111 111122355666666666665543211 11234
Q ss_pred CCCCCCEEEcccCccCccC----CccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCC---CCCCcccCC
Q 045598 93 GCVNLRFLALSNNNLQGHM----FSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS---GKIPRWLGN 165 (536)
Q Consensus 93 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~ 165 (536)
.+++|++|++++|.+++.. +..+.++++|++|++++|.+.+ .+..+..+++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5566666666666654221 2223355666666666665553 3345555666666666542211 122234455
Q ss_pred CCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCC--CCCCCCccEEEccCCCCCCcccccccCCCCCccE
Q 045598 166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243 (536)
Q Consensus 166 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 243 (536)
+++|+.++++++... ..+..+..+++|++|++++|.+++.... ...+++|+.|++. +.+.+......+..+++|++
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 566666666554322 3444555566666666666664432211 1245566666666 22222211222345566666
Q ss_pred EEccC-----------CcCCCc-cchhhhCCCCccEEEcccccccccccccccC-CCCCCEEecC----CCcCCCCCCcc
Q 045598 244 LDLSY-----------NRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLS----NNNLHGPIPSC 306 (536)
Q Consensus 244 L~L~~-----------n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~~~~~ 306 (536)
|++++ +.+++. .......+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.+.+.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 66662 344322 1222344666666666666666555444443 6666666664 33443321110
Q ss_pred ccccchhhhccccceeEEeeccceeeeccccccccceEEccCCc--CcCCCccccc-CCCCCCEEeCCCccCCCC-Cccc
Q 045598 307 FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK--LIGPIPLQIG-NLTRIQTLNLSHNNLTGS-IPST 382 (536)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~ 382 (536)
++... ...+++|++|++++|. +++..+..+. .+++|++|++++|++++. .+..
T Consensus 427 ---------------------~~~~~--~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 427 ---------------------GVRSL--LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp ---------------------HHHHH--HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred ---------------------HHHHH--HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 00000 1126788889987543 5544444443 378899999999888752 3445
Q ss_pred ccCCCCCCEEeCCCCccccc-CchhhhCCCCCCEEEccCCcCccc
Q 045598 383 FSNLKYVESLDLSNNKLNGK-IPHQLVELKTLEVFSVAYNNLSGE 426 (536)
Q Consensus 383 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~ 426 (536)
+..+++|++|++++|.+++. .+.....+++|+.|++++|+++..
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 67788899999999987654 344456788899999999988764
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.5e-27 Score=238.10 Aligned_cols=248 Identities=22% Similarity=0.216 Sum_probs=172.4
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
..+.++.++..++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence 3466777777776 6666554 36777777777777766777777777777777777776 45544456677777777
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccC-cCCCCCCcccCCCCCCCeEEccCCccc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNN-SLSGKIPRWLGNLTRLQCIIMPNNHLE 180 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 180 (536)
|++|.++...+..+..+++|++|++++|.+....+..|.++++|+.|++++| .+....+..|..+++|++|++++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 7777777666666667777777777777776555556667777777777663 333233334556666666666666665
Q ss_pred cCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260 (536)
Q Consensus 181 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 260 (536)
+. | .+..+++|+.|++++|.+++ +.+..|..+++|++|++++|.+.+..+..|.
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPE------------------------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSE------------------------ECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cc-c-cccccccccEEECcCCcCcc------------------------cCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence 33 2 34455555555555555542 3333478888999999999999888888888
Q ss_pred CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCC
Q 045598 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300 (536)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 300 (536)
.+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8999999999999998777777888899999999999876
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.5e-30 Score=271.90 Aligned_cols=404 Identities=12% Similarity=0.057 Sum_probs=250.6
Q ss_pred cCCCCCcCEEEccCCcCc---ccCC-----------hhHhhcCCCCcEEEccCCCCcccCCccCCC-CC-CCCEEEccCC
Q 045598 17 IHSHKRLGMLDISNNNFR---GHIP-----------VEIADVLPSLYAFNNSMNALDGSIPSSFGN-MK-FLQFLDLSNN 80 (536)
Q Consensus 17 ~~~~~~L~~L~ls~~~~~---~~~p-----------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~-~L~~L~L~~n 80 (536)
+..+++|++|+++++... +.+| ..+...+++|+.|++++|.+++..+..+.. ++ +|++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 345677888888764321 1111 222334677888888877776655554544 33 3888888777
Q ss_pred c-CccccchhHhhCCCCCCEEEcccCccCccCC----ccccCCCCCCEEEccCCcCcc----cCCcCCCCCCccCeeecc
Q 045598 81 H-LTGEIPEHLAVGCVNLRFLALSNNNLQGHMF----SRNFNLTNLKWLQLEGSRFVG----EIPQSLSKCSSLEGLYLN 151 (536)
Q Consensus 81 ~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~ 151 (536)
. ++...-..+...+++|++|++++|.+++... .....+++|++|++++|.+.+ .++..+.++++|+.|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 5 2211112233467788888888877654422 123466778888887777652 223334566778888887
Q ss_pred cCcCCCCCCcccCCCCCCCeEEccCCccc---cCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598 152 NNSLSGKIPRWLGNLTRLQCIIMPNNHLE---GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 228 (536)
Q Consensus 152 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 228 (536)
+|.+.+ .+..+..+++|++|+++..... ......+..+++|+.+.++++............++|++|++++|.+.+
T Consensus 229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred CccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 777663 5566677777888777653222 223345566677777777665333222222245677777777777544
Q ss_pred cccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccc-----------ccccccc-cccccCCCCCCEEecCC
Q 045598 229 QLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH-----------NNLEGEV-PIQLCELNQLQLLDLSN 296 (536)
Q Consensus 229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~-~~~~~~l~~L~~L~l~~ 296 (536)
......+..+++|++|+++++...+.++.....+++|++|++++ +.+++.. +.....+++|+.|+++.
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 33323356677777777773322223334445567777777773 4444322 22234567777777766
Q ss_pred CcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEcc----CCcCcCC-----CcccccCCCCCCE
Q 045598 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLS----CNKLIGP-----IPLQIGNLTRIQT 367 (536)
Q Consensus 297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~ 367 (536)
+.+++..+..+. ..+++|++|+++ .|.+++. ++..+.++++|+.
T Consensus 388 ~~l~~~~~~~l~---------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 388 SDITNESLESIG---------------------------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp SCCCHHHHHHHH---------------------------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCccHHHHHHHH---------------------------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 665542222111 125789999997 5667653 3334677999999
Q ss_pred EeCCCcc--CCCCCcccc-cCCCCCCEEeCCCCcccc-cCchhhhCCCCCCEEEccCCcCccc-CCCCccccccCCcccc
Q 045598 368 LNLSHNN--LTGSIPSTF-SNLKYVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGE-IPEWTAQFATFNESSY 442 (536)
Q Consensus 368 L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~l~l 442 (536)
|++++|. +++..+..+ ..+++|++|++++|++++ ..+..+..+++|+.|++++|++++. ++.....+++++.+++
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 9998654 554444433 448999999999999986 3455567899999999999998754 3444456889999999
Q ss_pred ccCcCC
Q 045598 443 EGNTFL 448 (536)
Q Consensus 443 ~~n~~~ 448 (536)
++|+..
T Consensus 521 s~n~it 526 (592)
T 3ogk_B 521 QGYRAS 526 (592)
T ss_dssp ESCBCC
T ss_pred cCCcCC
Confidence 999843
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-26 Score=224.32 Aligned_cols=236 Identities=19% Similarity=0.264 Sum_probs=152.4
Q ss_pred CCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEE
Q 045598 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL 196 (536)
Q Consensus 117 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 196 (536)
..++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|+.|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3477888888888887 56667777888888888888887 67777888888888888888887 557778888888888
Q ss_pred EccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccc
Q 045598 197 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276 (536)
Q Consensus 197 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 276 (536)
++++|.+.+..|..+.. . .. ...+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~-----~---------~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS-----T---------DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE-----E---------C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh-----c---------cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 88887665444432210 0 00 011334445555555555444 33444444444444444444444
Q ss_pred ccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCc
Q 045598 277 GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356 (536)
Q Consensus 277 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 356 (536)
+ +|..+..+ ++|++|++++|.+.+..|
T Consensus 220 ~-l~~~l~~l----------------------------------------------------~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 220 A-LGPAIHHL----------------------------------------------------PKLEELDLRGCTALRNYP 246 (328)
T ss_dssp C-CCGGGGGC----------------------------------------------------TTCCEEECTTCTTCCBCC
T ss_pred c-CchhhccC----------------------------------------------------CCCCEEECcCCcchhhhH
Confidence 2 23333344 445555555555555566
Q ss_pred ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598 357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 424 (536)
..++.+++|++|+|++|++.+..|..+..+++|++|+|++|++.+.+|..+.++++|+.+++..+.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66666777777777777777677777777777777777777777777777777777777777766544
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.3e-26 Score=223.91 Aligned_cols=186 Identities=20% Similarity=0.250 Sum_probs=155.2
Q ss_pred CCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeE
Q 045598 93 GCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCI 172 (536)
Q Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 172 (536)
...++++|++++|.++ ..+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4589999999999999 45666888999999999999999 78888999999999999999998 778899999999999
Q ss_pred EccCCccccCCcccccC---------CCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccE
Q 045598 173 IMPNNHLEGPIPVEFCQ---------LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243 (536)
Q Consensus 173 ~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 243 (536)
++++|++.+..|..+.. +++|++|++++|+++ .++.. +..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~~-l~~l~~L~~ 210 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPAS-IANLQNLKS 210 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCGG-GGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchHh-hcCCCCCCE
Confidence 99998887777766543 555666655555544 34443 788999999
Q ss_pred EEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF 307 (536)
Q Consensus 244 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 307 (536)
|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence 9999999995 55678999999999999999998888888888888888888887665555443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-28 Score=235.33 Aligned_cols=239 Identities=21% Similarity=0.194 Sum_probs=124.2
Q ss_pred CCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccE
Q 045598 139 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ 218 (536)
Q Consensus 139 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 218 (536)
+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ .++|+.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence 3444455555555555554444455555555555555555543332 5555555555555555543221 134444
Q ss_pred EEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccc-cCCCCCCEEecCCC
Q 045598 219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQL-CELNQLQLLDLSNN 297 (536)
Q Consensus 219 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n 297 (536)
|++++|.+.+..+ ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|
T Consensus 104 L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 4444444432211 124567777777777766656566666777777777777765555544 35666777777666
Q ss_pred cCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCC
Q 045598 298 NLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG 377 (536)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 377 (536)
.+++..+.. .+++|++|++++|.+++. |..+..+++|+.|++++|+++
T Consensus 180 ~l~~~~~~~------------------------------~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~- 227 (317)
T 3o53_A 180 FIYDVKGQV------------------------------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV- 227 (317)
T ss_dssp CCCEEECCC------------------------------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-
T ss_pred cCccccccc------------------------------ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-
Confidence 655321110 134455555555555432 222444555555555555555
Q ss_pred CCcccccCCCCCCEEeCCCCccc-ccCchhhhCCCCCCEEEcc
Q 045598 378 SIPSTFSNLKYVESLDLSNNKLN-GKIPHQLVELKTLEVFSVA 419 (536)
Q Consensus 378 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~ 419 (536)
.+|..+..+++|+.|++++|++. +..+..+..+++|+.++++
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 23444455555555555555554 3444444444444444444
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.1e-25 Score=233.52 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=52.8
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEc
Q 045598 47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQL 126 (536)
Q Consensus 47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 126 (536)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++.... .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 4667777777666 4454443 56677777777666 5554 35666666666666654322 4455666666
Q ss_pred cCCcCcccCCcCCCCCCccCeeecccCcCC
Q 045598 127 EGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156 (536)
Q Consensus 127 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 156 (536)
++|.+.+. |. .+++|+.|++++|.+.
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCS
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCC
Confidence 65555532 22 3344555555555544
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4e-25 Score=229.38 Aligned_cols=113 Identities=26% Similarity=0.351 Sum_probs=50.6
Q ss_pred CCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecc
Q 045598 72 LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLN 151 (536)
Q Consensus 72 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 151 (536)
+++|++++|.++ .+|..+. ++|++|++++|.++.+.. .+++|++|++++|+++. +|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 455555555554 4444331 455555555555543222 33455555555555442 222 34455555555
Q ss_pred cCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598 152 NNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 152 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
+|.+.+ +|. .+++|++|++++|+++.+ |. .+++|+.|++++|.++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLA 154 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCC
Confidence 555442 222 234455555555544432 11 1244444444444443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.7e-28 Score=233.95 Aligned_cols=274 Identities=18% Similarity=0.190 Sum_probs=216.7
Q ss_pred cCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCC
Q 045598 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 224 (536)
Q Consensus 145 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 224 (536)
++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+ ...+++|+.|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 4445555555543444456677899999999999998888899999999999999999987665 457789999999999
Q ss_pred CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP 304 (536)
Q Consensus 225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 304 (536)
.+.+ +...++|++|++++|.+++..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 91 ~l~~------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 91 YVQE------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEEE------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred cccc------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 8853 22348999999999999866544 36789999999999998778788899999999999999887655
Q ss_pred ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccccc
Q 045598 305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS 384 (536)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 384 (536)
..+.. .+++|++|++++|.+++. + ....+++|++|++++|++++. |..+.
T Consensus 162 ~~~~~---------------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~ 211 (317)
T 3o53_A 162 AELAA---------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQ 211 (317)
T ss_dssp GGGGG---------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGG
T ss_pred HHHhh---------------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhc
Confidence 44421 157899999999999865 3 233589999999999999964 44588
Q ss_pred CCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc-ccCCCCccccccCCccccccCcCCCCCCCCCCCCC
Q 045598 385 NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSP 459 (536)
Q Consensus 385 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~~C~~~ 459 (536)
.+++|++|++++|+++ .+|..+..+++|+.|++++|+++ +..|.++..++.++.+++.+++...+.....|..+
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~ 286 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence 9999999999999998 56777889999999999999998 67777777888888888886544443333334433
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.3e-27 Score=241.43 Aligned_cols=245 Identities=22% Similarity=0.212 Sum_probs=131.6
Q ss_pred CccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEcc
Q 045598 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 222 (536)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 222 (536)
++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ .++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 355555555555554444555555555555555555553333 5555556666665555543221 1333333333
Q ss_pred CCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc-CCCCCCEEecCCCcCCC
Q 045598 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC-ELNQLQLLDLSNNNLHG 301 (536)
Q Consensus 223 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~ 301 (536)
+|.+.+..+ ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus 108 ~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 333322211 1235566666666666655555555566666666666666655555443 45556666665555543
Q ss_pred CCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc
Q 045598 302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS 381 (536)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 381 (536)
. .+ ...+++|+.|+|++|.+++..+
T Consensus 184 ~----------------------------------------------------~~--~~~l~~L~~L~Ls~N~l~~~~~- 208 (487)
T 3oja_A 184 V----------------------------------------------------KG--QVVFAKLKTLDLSSNKLAFMGP- 208 (487)
T ss_dssp E----------------------------------------------------EC--CCCCTTCCEEECCSSCCCEECG-
T ss_pred c----------------------------------------------------cc--cccCCCCCEEECCCCCCCCCCH-
Confidence 2 11 2235566666666666664333
Q ss_pred cccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc-ccCCCCccccccCCccccc-------cCcCCCCCCC
Q 045598 382 TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYE-------GNTFLCGLPL 453 (536)
Q Consensus 382 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~l~-------~n~~~c~~~l 453 (536)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|.++..++.+..+.+. ++++.|.|+.
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 35566666666666666663 4445556666666666666665 3444444455555555554 7788887653
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=3.5e-25 Score=208.06 Aligned_cols=186 Identities=25% Similarity=0.272 Sum_probs=126.8
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI 318 (536)
Q Consensus 239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 318 (536)
+++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------- 107 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ--------- 107 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc---------
Confidence 35666666666666555555666666666666666666444445566666667777666666555544433
Q ss_pred cceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398 (536)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 398 (536)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 108 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 108 -------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp -------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 4567777777777766666667777777777777777776666667777777777777777
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
+++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 776666667777777777777777776666666667777777777777777775
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.2e-27 Score=229.80 Aligned_cols=249 Identities=23% Similarity=0.195 Sum_probs=158.1
Q ss_pred CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCc-ccCCccCC-------CCCCCCEEEccCCcCccccchhH
Q 045598 19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALD-GSIPSSFG-------NMKFLQFLDLSNNHLTGEIPEHL 90 (536)
Q Consensus 19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~ 90 (536)
..++|+.|++++|.+ .+|..++. .|+.|++++|.++ ..++..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345677777777777 56776666 2677777777663 23444343 56777777777777766666654
Q ss_pred h-hCCCCCCEEEcccCccCccCCccccCC-----CCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC--CCcc
Q 045598 91 A-VGCVNLRFLALSNNNLQGHMFSRNFNL-----TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRW 162 (536)
Q Consensus 91 ~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~ 162 (536)
+ ..+++|++|++++|.+++. +..+..+ ++|++|++++|++.+..+..+.++++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 3 5667777777777777655 4545444 6677777777777666656666777777777777665432 1222
Q ss_pred c--CCCCCCCeEEccCCcccc---CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCC
Q 045598 163 L--GNLTRLQCIIMPNNHLEG---PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 237 (536)
Q Consensus 163 ~--~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 237 (536)
+ ..+++|++|++++|++++ .....+..+++|+.|++++|++++. .+...+..
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~~ 251 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA-----------------------AGAPSCDW 251 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-----------------------CCCSCCCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc-----------------------cchhhhhh
Confidence 2 566667777777666652 1123334556666666666666543 22222455
Q ss_pred CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCC
Q 045598 238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG 301 (536)
Q Consensus 238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 301 (536)
+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 677788888888777 4555444 6788888888887754 54 7777888888888887764
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.8e-27 Score=227.24 Aligned_cols=209 Identities=23% Similarity=0.235 Sum_probs=124.6
Q ss_pred CCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCcc-CCcccc-------CCCCCCEEEccCCcCcccCCc
Q 045598 66 FGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNF-------NLTNLKWLQLEGSRFVGEIPQ 137 (536)
Q Consensus 66 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-------~l~~L~~L~L~~n~i~~~~~~ 137 (536)
+++.++|+.|++++|.+ .+|..+... |++|++++|.++.. .+..+. ++++|++|++++|++.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 45556777777888777 567666433 67777777777432 222222 567777777777777766666
Q ss_pred CC--CCCCccCeeecccCcCCCCCCcccCCC-----CCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCC
Q 045598 138 SL--SKCSSLEGLYLNNNSLSGKIPRWLGNL-----TRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSC 210 (536)
Q Consensus 138 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 210 (536)
.+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+..+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-- 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence 54 6777777777777777755 5555555 677777777777766666666666677777776666542100
Q ss_pred CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc---cchhhhCCCCccEEEccccccccccc-ccccCC
Q 045598 211 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS---ISDWVDGLSQLSHLILGHNNLEGEVP-IQLCEL 286 (536)
Q Consensus 211 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 286 (536)
..+...+..+++|++|++++|.+++. ....+..+++|+.|++++|.+++..| ..+..+
T Consensus 191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 01111135666777777777766621 11233445566666666665554432 223334
Q ss_pred CCCCEEecCCCcCC
Q 045598 287 NQLQLLDLSNNNLH 300 (536)
Q Consensus 287 ~~L~~L~l~~n~~~ 300 (536)
++|++|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 55555555555444
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.8e-25 Score=209.63 Aligned_cols=208 Identities=26% Similarity=0.271 Sum_probs=160.8
Q ss_pred ccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecC
Q 045598 216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS 295 (536)
Q Consensus 216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 295 (536)
++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 30 l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 444444444442 2333347778888888888888887666778888888888888888887777778888888888888
Q ss_pred CCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCC-CcccccCCCCCCEEeCCCcc
Q 045598 296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP-IPLQIGNLTRIQTLNLSHNN 374 (536)
Q Consensus 296 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~ 374 (536)
+|.+.+..+..+.. +++|++|++++|.+.+. .|..+..+++|++|++++|+
T Consensus 109 ~n~l~~~~~~~~~~----------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 109 ETNLASLENFPIGH----------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TSCCCCSTTCCCTT----------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCccccCchhccc----------------------------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 88887766555543 67888888888888764 57888888999999999999
Q ss_pred CCCCCcccccCCCCCC----EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598 375 LTGSIPSTFSNLKYVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450 (536)
Q Consensus 375 l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~ 450 (536)
+++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..+..+++++.+++.+||+.|+
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 9877777777777777 889999999866655554 44799999999999877777777888899999999999998
Q ss_pred CCC
Q 045598 451 LPL 453 (536)
Q Consensus 451 ~~l 453 (536)
|+.
T Consensus 240 c~~ 242 (276)
T 2z62_A 240 CPR 242 (276)
T ss_dssp TTT
T ss_pred CCc
Confidence 863
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.3e-29 Score=261.34 Aligned_cols=251 Identities=15% Similarity=0.165 Sum_probs=139.1
Q ss_pred cCCCCCcCEEEccCCcCccc---CC-----------hhHhhcCCCCcEEEccCCCCcccCCccCC-CCCCCCEEEccCC-
Q 045598 17 IHSHKRLGMLDISNNNFRGH---IP-----------VEIADVLPSLYAFNNSMNALDGSIPSSFG-NMKFLQFLDLSNN- 80 (536)
Q Consensus 17 ~~~~~~L~~L~ls~~~~~~~---~p-----------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n- 80 (536)
+..+++|+.|+++++..... .| ..+...+++|+.|+++++.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 34567888888887642211 11 23344577888888888887765555554 5788888888887
Q ss_pred cCccccchhHhhCCCCCCEEEcccCccCccCCccc----cCCCCCCEEEccCCc--Ccc-cCCcCCCCCCccCeeecccC
Q 045598 81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN----FNLTNLKWLQLEGSR--FVG-EIPQSLSKCSSLEGLYLNNN 153 (536)
Q Consensus 81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~--i~~-~~~~~~~~l~~L~~L~l~~n 153 (536)
.+++.....+...+++|++|++++|.+++.....+ ..+++|++|+++++. +.. ..+..+..+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 45422233444578888888888887765443333 266788888888775 211 11112234678888888877
Q ss_pred cCCCCCCcccCCCCCCCeEEccCCc-------cccCCcccccCCCCCCEE-EccCCcCcccCCCCC-CCCCccEEEccCC
Q 045598 154 SLSGKIPRWLGNLTRLQCIIMPNNH-------LEGPIPVEFCQLDLLQIL-DISDNNISGSLPSCF-HPLSIKQVHLSKN 224 (536)
Q Consensus 154 ~~~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~-~~~~L~~L~l~~n 224 (536)
...+..+..+..+++|++|+++.+. +.+ .+..+.++++|+.+ .+.+.... ..+... ..++|++|++++|
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCC
Confidence 3222245556667778888755442 221 22245566666666 22222111 111111 3455666666666
Q ss_pred CCCCcccccccCCCCCccEEEccCCcCCC-ccchhhhCCCCccEEEc
Q 045598 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNG-SISDWVDGLSQLSHLIL 270 (536)
Q Consensus 225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 270 (536)
.+.+......+..+++|++|++++| +.+ ..+.....+++|++|++
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 5433222222345566666666655 221 11222233556666665
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=7.8e-25 Score=207.35 Aligned_cols=183 Identities=27% Similarity=0.256 Sum_probs=140.9
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI 318 (536)
Q Consensus 239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 318 (536)
++++.|++++|.+++..+..+..+++|+.|++++|.+++..+ ...+++|++|++++|.++. .|..+..
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~--------- 98 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQS-LPLLGQT--------- 98 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSS-CCCCTTT---------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCCc-Cchhhcc---------
Confidence 466777777777776666677777777777777777774333 2567788888888887763 3333322
Q ss_pred cceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398 (536)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 398 (536)
+++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 99 -------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 99 -------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp -------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred -------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5678888888888887777788888888888888888887777778888888889999888
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598 399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 453 (536)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l 453 (536)
++...+..|..+++|+.|++++|+++ .+|..+....+++.+++.+|||.|+|..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 88776677788888999999998888 5666666777888888999999998864
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-26 Score=233.35 Aligned_cols=234 Identities=21% Similarity=0.165 Sum_probs=152.8
Q ss_pred CCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEcc
Q 045598 96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP 175 (536)
Q Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 175 (536)
+|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ...++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEECc
Confidence 67777777777776666666677777777777776664433 66666666666666665521 122555666666
Q ss_pred CCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCcc
Q 045598 176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 255 (536)
Q Consensus 176 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 255 (536)
+|.+.+..+. .+++|+.|++ ++|.+.+..+. .+..+++|+.|++++|.+++..
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L-----------------------~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYL-----------------------ANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEEC-----------------------CSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCCCCCcc---ccCCCCEEEC-----------------------CCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcC
Confidence 6555543322 2344445554 44444333333 3778899999999999999888
Q ss_pred chhhh-CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeec
Q 045598 256 SDWVD-GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ 334 (536)
Q Consensus 256 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (536)
|..+. .+++|+.|++++|.+++..+ ...+++|+.|++++|.+++.++
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~------------------------------ 208 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP------------------------------ 208 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG------------------------------
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH------------------------------
Confidence 87775 79999999999999986532 3346777777777776653222
Q ss_pred cccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc-ccCchhhhCCCCC
Q 045598 335 GKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN-GKIPHQLVELKTL 413 (536)
Q Consensus 335 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 413 (536)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|
T Consensus 209 -----------------------~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 209 -----------------------EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp -----------------------GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred -----------------------hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 24555666777777777663 4555666777777777777776 4555666667777
Q ss_pred CEEEcc
Q 045598 414 EVFSVA 419 (536)
Q Consensus 414 ~~L~l~ 419 (536)
+.++++
T Consensus 265 ~~l~~~ 270 (487)
T 3oja_A 265 QTVAKQ 270 (487)
T ss_dssp HHHHHH
T ss_pred cEEecc
Confidence 766665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.3e-24 Score=203.30 Aligned_cols=223 Identities=23% Similarity=0.263 Sum_probs=166.8
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598 24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS 103 (536)
Q Consensus 24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 103 (536)
..++.++.++. .+|..+. ++|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 10 ~~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECC
Confidence 35666666776 7777664 47899999999998877778999999999999999998 6666666789999999999
Q ss_pred cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC-CCcccCCCCCCCeEEccCCccccC
Q 045598 104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTRLQCIIMPNNHLEGP 182 (536)
Q Consensus 104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~ 182 (536)
+|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+. .|..+..+++|++|++++|++++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 9999888888888999999999999998877766788999999999999998763 578888899999999999998877
Q ss_pred CcccccCCCCCC----EEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCC
Q 045598 183 IPVEFCQLDLLQ----ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252 (536)
Q Consensus 183 ~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 252 (536)
.+..+..+++|+ .|++++|.+.+..+..+...+|+.|++++|.+. .++...|..+++|++|++++|++.
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccc
Confidence 777777666666 788888888766554444334444444444443 222222344444444444444433
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4.1e-28 Score=255.11 Aligned_cols=380 Identities=14% Similarity=0.094 Sum_probs=252.2
Q ss_pred CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCC-CCccc-CCccCCCCCCCCEEEccCCcCccccchh---Hhh
Q 045598 18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMN-ALDGS-IPSSFGNMKFLQFLDLSNNHLTGEIPEH---LAV 92 (536)
Q Consensus 18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~ 92 (536)
..+++|++|+++++.+.+..+..+...+++|+.|++++| .+++. ++..+.++++|++|++++|.+++..+.. +..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 367899999999999987777788766899999999998 45432 3344558999999999999877433322 224
Q ss_pred CCCCCCEEEcccCc--cCccCC-ccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCc-------CCCCCCcc
Q 045598 93 GCVNLRFLALSNNN--LQGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNS-------LSGKIPRW 162 (536)
Q Consensus 93 ~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~~ 162 (536)
.+++|++|++++|. +..... ..+..+++|++|++++|...+..+..+..+++|++|++..+. +. ..+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence 67899999999986 221111 112357999999999983332356667788999999976543 22 12335
Q ss_pred cCCCCCCCeE-EccCCccccCCcccccCCCCCCEEEccCCcCcccCCC--CCCCCCccEEEccCCCCCCcccccccCCCC
Q 045598 163 LGNLTRLQCI-IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 239 (536)
Q Consensus 163 ~~~l~~L~~L-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 239 (536)
+.++++|+.+ .+.+... ...+..+..+++|++|++++|.+++.... ...+++|+.|++.+| +.+.........++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 6778888888 3433322 23344444678899999998886543211 125678999999887 33222222234578
Q ss_pred CccEEEccC---------CcCCCccchhh-hCCCCccEEEccccccccccccccc-CCCCCCEEecC--C----CcCCCC
Q 045598 240 SLVTLDLSY---------NRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLC-ELNQLQLLDLS--N----NNLHGP 302 (536)
Q Consensus 240 ~L~~L~L~~---------n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~ 302 (536)
+|++|++.+ +.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 999998843 34443322223 3488999998888888766555554 58899999998 3 333322
Q ss_pred CCc-cccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccC-CCCCCEEeCCCccCCCCCc
Q 045598 303 IPS-CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN-LTRIQTLNLSHNNLTGSIP 380 (536)
Q Consensus 303 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~ 380 (536)
..+ .+.. + ...+++|++|++++ .+++..+..+.. +++|+.|+|++|.+++...
T Consensus 419 ~~~~~~~~----------------------l--~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 419 PLDIGFGA----------------------I--VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTHHHHHH----------------------H--HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred chhhHHHH----------------------H--HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 111 0000 0 01256788888877 565554445544 7888888888888875444
Q ss_pred ccc-cCCCCCCEEeCCCCcccccCch-hhhCCCCCCEEEccCCcCcc
Q 045598 381 STF-SNLKYVESLDLSNNKLNGKIPH-QLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 381 ~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~ 425 (536)
..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 444 6678888888888888644333 33457888888888888753
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.8e-23 Score=196.35 Aligned_cols=179 Identities=23% Similarity=0.280 Sum_probs=137.9
Q ss_pred CCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEE
Q 045598 21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFL 100 (536)
Q Consensus 21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 100 (536)
.+.+.+++++++++ .+|..++ ++++.|++++|.+++..+.+|.++++|++|++++|.++ .++...+..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence 45788999999888 7887665 47889999999888777778889999999999999888 7787777788888888
Q ss_pred EcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccc
Q 045598 101 ALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180 (536)
Q Consensus 101 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 180 (536)
++++|.++...+..+.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 88888888777777777888888888888877766666777777777777777777555555667777777777777776
Q ss_pred cCCcccccCCCCCCEEEccCCcCc
Q 045598 181 GPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 181 ~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
+..+..|..+++|+.|++++|+++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EeChhHhccCCCcCEEECCCCcCC
Confidence 655555666666666666666655
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.1e-24 Score=201.69 Aligned_cols=225 Identities=23% Similarity=0.258 Sum_probs=163.7
Q ss_pred cCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCC
Q 045598 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 224 (536)
Q Consensus 145 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 224 (536)
+..+++.++.+.+. .....+++|+.|++++|.+... ..+..+++|+.|++++|.+.+
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~------------------- 77 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD------------------- 77 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-------------------
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-------------------
Confidence 33444444444322 2234456666666666665522 235556666666666665542
Q ss_pred CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP 304 (536)
Q Consensus 225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 304 (536)
++ .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 78 -----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 78 -----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp -----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 11 26677788888888888877767777778888888888888886666667888888888888888887666
Q ss_pred ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccccc
Q 045598 305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS 384 (536)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 384 (536)
..+.. +++|++|++++|.+++..+..++.+++|++|++++|++++..+..+.
T Consensus 151 ~~~~~----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 151 GVFDK----------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp TTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred HHhcc----------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 55544 56788888888888877777788899999999999999988888889
Q ss_pred CCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc
Q 045598 385 NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 434 (536)
Q Consensus 385 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 434 (536)
.+++|++|++++|.+.+ .+++|+.+++..|.++|.+|.+++.+
T Consensus 203 ~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 99999999999998874 35678889999999999988876544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.5e-23 Score=193.71 Aligned_cols=185 Identities=21% Similarity=0.175 Sum_probs=156.2
Q ss_pred CcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCC
Q 045598 16 PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV 95 (536)
Q Consensus 16 ~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 95 (536)
.+.++++++.+++++++++ .+|..++ +.++.|++++|.+++..+..|.++++|++|++++|.++ .++.. ..++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCT
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCC
Confidence 3678899999999999998 8887775 48999999999999888889999999999999999998 66653 5788
Q ss_pred CCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEcc
Q 045598 96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP 175 (536)
Q Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 175 (536)
+|++|++++|.++. .+..+..+++|++|++++|++.+..+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 78 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 99999999999884 45567888999999999999887777788889999999999998887666777888889999999
Q ss_pred CCccccCCcccccCCCCCCEEEccCCcCcccCC
Q 045598 176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLP 208 (536)
Q Consensus 176 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 208 (536)
+|+++...+..|..+++|+.|++++|+++....
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 998887777777888888888888888874433
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.1e-22 Score=188.68 Aligned_cols=180 Identities=26% Similarity=0.288 Sum_probs=135.2
Q ss_pred CccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEec
Q 045598 215 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDL 294 (536)
Q Consensus 215 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 294 (536)
..+.++++++.+. .++.. +. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567777777764 44443 22 57788888888887777777778888888888888888767777778888888888
Q ss_pred CCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc
Q 045598 295 SNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN 374 (536)
Q Consensus 295 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 374 (536)
++|.+++..+..+.. +++|++|++++|.+++..+..|..+++|++|+|++|.
T Consensus 91 ~~n~l~~~~~~~~~~----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 91 ANNQLASLPLGVFDH----------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp TTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhHhcc----------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 888887666665544 5678888888888876666667778888888888888
Q ss_pred CCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCccc
Q 045598 375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 426 (536)
Q Consensus 375 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 426 (536)
+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8766666777788888888888888777676777788888888888887765
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.7e-22 Score=189.92 Aligned_cols=181 Identities=24% Similarity=0.242 Sum_probs=103.3
Q ss_pred CCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEE
Q 045598 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLL 292 (536)
Q Consensus 213 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 292 (536)
+.+|+.|++.+|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4456666666665532 22 145566666666666665542 245556666666666666665555555566666666
Q ss_pred ecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCC
Q 045598 293 DLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372 (536)
Q Consensus 293 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 372 (536)
++++|.+++..+..+.. +++|++|++++|.+++..+..+..+++|++|++++
T Consensus 115 ~L~~n~l~~~~~~~~~~----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDK----------------------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp ECTTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCccCHHHhcc----------------------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 66666665554444433 44566666666666555555555566666666666
Q ss_pred ccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCccc
Q 045598 373 NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 426 (536)
Q Consensus 373 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 426 (536)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 666655555555566666666666666655555555566666666666655543
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.4e-22 Score=186.42 Aligned_cols=180 Identities=22% Similarity=0.275 Sum_probs=105.2
Q ss_pred CccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319 (536)
Q Consensus 240 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 319 (536)
+.++++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------- 81 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---------- 81 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc----------
Confidence 34556666665552 332222 45666666666666555555666666666666666666555544433
Q ss_pred ceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcc
Q 045598 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399 (536)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 399 (536)
+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++
T Consensus 82 ------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 82 ------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp ------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence 44566666666666655555556666666666666666655555556666666666666666
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598 400 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450 (536)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~ 450 (536)
++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+|++.|+
T Consensus 144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 655555566666666666666666655555555556666666666666665
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=1.2e-22 Score=184.20 Aligned_cols=136 Identities=24% Similarity=0.322 Sum_probs=79.5
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 419 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 419 (536)
+|++|++++|.+.+..|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 44444444444444444555555555555555555554444445555555555555555555555555555555555565
Q ss_pred CCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcCccc
Q 045598 420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDNL 475 (536)
Q Consensus 420 ~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~ 475 (536)
+|++++..+..+..+++++.+++.+|||.|+|++. .|..|...+++.+..++.+++
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~ 208 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF 208 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGC
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHC
Confidence 55555555555555555556666666666665432 588898888887777766554
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.8e-22 Score=184.65 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=80.9
Q ss_pred CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc-CccccchhHhhCCCCCCEEEccc-CccCcc
Q 045598 33 FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH-LTGEIPEHLAVGCVNLRFLALSN-NNLQGH 110 (536)
Q Consensus 33 ~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 110 (536)
++ .+|. +. ++++.|++++|.+++..+.+|.++++|++|++++|. ++ .++...+.++++|++|++++ |.++..
T Consensus 23 l~-~ip~-~~---~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQ-RIPS-LP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CS-SCCC-CC---TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred cc-ccCC-CC---CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 44 5665 32 367777777777776666667777777777777775 66 56655556667777777776 666666
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC---eeecccC-cCCCCCCcccCCCCCCC-eEEccCCcc
Q 045598 111 MFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE---GLYLNNN-SLSGKIPRWLGNLTRLQ-CIIMPNNHL 179 (536)
Q Consensus 111 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~ 179 (536)
.+..+.++++|++|++++|.+.+ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ +|++++|++
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 55566666666666666666553 333 44444444 5555554 44433333334444444 444444333
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.4e-23 Score=205.91 Aligned_cols=182 Identities=23% Similarity=0.206 Sum_probs=80.2
Q ss_pred EEcccCccCccCCccccCCCCCCEEEccCCcCcccCC----cCCCCCC-ccCeeecccCcCCCCCCcccCCC-----CCC
Q 045598 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP----QSLSKCS-SLEGLYLNNNSLSGKIPRWLGNL-----TRL 169 (536)
Q Consensus 100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L 169 (536)
++++.|.+++..+..+...++|++|++++|.+.+..+ ..+.+++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555554444433344445555555555544333 3344444 45555555555544333333332 445
Q ss_pred CeEEccCCccccCCcccc----cCC-CCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCC-CCCccE
Q 045598 170 QCIIMPNNHLEGPIPVEF----CQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN-CSSLVT 243 (536)
Q Consensus 170 ~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~ 243 (536)
++|++++|.+++..+..+ ... ++|+.|++++|.+++..+. .+. ..+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-------------------~l~-~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-------------------EFK-QAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-------------------HHH-HHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-------------------HHH-HHHHhCCCceeE
Confidence 555555544443333322 122 3444444444444321110 000 01222 245666
Q ss_pred EEccCCcCCCccc----hhhhCCC-CccEEEccccccccccccc----ccCC-CCCCEEecCCCcCCC
Q 045598 244 LDLSYNRLNGSIS----DWVDGLS-QLSHLILGHNNLEGEVPIQ----LCEL-NQLQLLDLSNNNLHG 301 (536)
Q Consensus 244 L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~~~~ 301 (536)
|++++|.+++... ..+..++ +|++|++++|.+++..+.. +..+ ++|++|++++|.+++
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 6666666553222 2223333 5666666666555444322 2233 356666666555543
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.2e-22 Score=181.55 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=165.4
Q ss_pred ccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCC-CcccCCccCCCCCCCCEEEccC-CcCccccch
Q 045598 11 GPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNA-LDGSIPSSFGNMKFLQFLDLSN-NHLTGEIPE 88 (536)
Q Consensus 11 ~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 88 (536)
..+|. + .++|++|++++|+++ .+|...+..+++|+.|++++|. ++...+.+|.++++|++|++++ |.++ .++.
T Consensus 24 ~~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~ 98 (239)
T 2xwt_C 24 QRIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDP 98 (239)
T ss_dssp SSCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECT
T ss_pred cccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCH
Confidence 35665 3 358999999999999 6666555568999999999997 8877777999999999999999 9998 7887
Q ss_pred hHhhCCCCCCEEEcccCccCccCCccccCCCCCC---EEEccCC-cCcccCCcCCCCCCccC-eeecccCcCCCCCCccc
Q 045598 89 HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLK---WLQLEGS-RFVGEIPQSLSKCSSLE-GLYLNNNSLSGKIPRWL 163 (536)
Q Consensus 89 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~ 163 (536)
..+.++++|++|++++|.+++.. . +..+++|+ +|++++| .+....+..|.++++|+ .|++++|.+....+..+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 77789999999999999998743 3 78888888 9999999 99888778899999999 99999999984444445
Q ss_pred CCCCCCCeEEccCCc-cccCCcccccCC-CCCCEEEccCCcCcccCCCCCCCCCccEEEcc
Q 045598 164 GNLTRLQCIIMPNNH-LEGPIPVEFCQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLS 222 (536)
Q Consensus 164 ~~l~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 222 (536)
.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|++++..+. .+.+|+.|++.
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence 55 899999999995 887778888998 9999999999988754332 23344444443
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.3e-23 Score=206.16 Aligned_cols=212 Identities=20% Similarity=0.191 Sum_probs=112.5
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEEccCCcCccccch----hHhhCCC-CCCEEEcccCccCccCCccccCCCCCCEEE
Q 045598 51 FNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPE----HLAVGCV-NLRFLALSNNNLQGHMFSRNFNLTNLKWLQ 125 (536)
Q Consensus 51 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 125 (536)
+.++.|.+++.+|..+...++|++|++++|.++ ..+. ..+..++ +|++|++++|.++...+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH-------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH-------
Confidence 456666666655555555555666666666665 3332 2334455 56666666665554443333322
Q ss_pred ccCCcCcccCCcCCCC-CCccCeeecccCcCCCCCCcc----cCCC-CCCCeEEccCCccccCCcccc----cC-CCCCC
Q 045598 126 LEGSRFVGEIPQSLSK-CSSLEGLYLNNNSLSGKIPRW----LGNL-TRLQCIIMPNNHLEGPIPVEF----CQ-LDLLQ 194 (536)
Q Consensus 126 L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~ 194 (536)
+.. .++|++|++++|.+.+..+.. +..+ ++|++|++++|.+++..+..+ .. .++|+
T Consensus 75 -------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 75 -------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp -------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred -------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 000 144555555555444333322 2223 566666666666654444332 22 24677
Q ss_pred EEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCC-CccEEEccCCcCCCccchhh----hCC-CCccEE
Q 045598 195 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYNRLNGSISDWV----DGL-SQLSHL 268 (536)
Q Consensus 195 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L 268 (536)
+|++++|.+++.... .+... +...+ +|++|++++|.+++..+..+ ..+ ++|++|
T Consensus 142 ~L~Ls~N~l~~~~~~-------------------~l~~~-l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 142 SLNLRGNDLGIKSSD-------------------ELIQI-LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp EEECTTSCGGGSCHH-------------------HHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred EEEccCCcCCHHHHH-------------------HHHHH-HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence 777777766532110 11111 23333 77777777777765554433 334 478888
Q ss_pred Eccccccccc----ccccccC-CCCCCEEecCCCcCCCCC
Q 045598 269 ILGHNNLEGE----VPIQLCE-LNQLQLLDLSNNNLHGPI 303 (536)
Q Consensus 269 ~L~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~ 303 (536)
++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 8888877752 3334444 347778888777766543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=5.9e-22 Score=189.97 Aligned_cols=208 Identities=24% Similarity=0.218 Sum_probs=110.8
Q ss_pred CCCCEEEccCCcCcccCCcCC--CCCCccCeeecccCcCCCCCC----cccCCCCCCCeEEccCCccccCCcccccCCCC
Q 045598 119 TNLKWLQLEGSRFVGEIPQSL--SKCSSLEGLYLNNNSLSGKIP----RWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL 192 (536)
Q Consensus 119 ~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 192 (536)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666655555555 566666666666666654333 22334566666666666666555556666666
Q ss_pred CCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch---hhhCCCCccEEE
Q 045598 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD---WVDGLSQLSHLI 269 (536)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ 269 (536)
|++|++++|++.+.. +......+..+++|++|++++|.++...+. .+..+++|++|+
T Consensus 171 L~~L~Ls~N~l~~~~--------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 171 LTSLDLSDNPGLGER--------------------GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp CCEEECCSCTTCHHH--------------------HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred CCEEECCCCCCccch--------------------hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 666666666543210 000111134556666666666666521111 234445555555
Q ss_pred cccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCC
Q 045598 270 LGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCN 349 (536)
Q Consensus 270 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 349 (536)
+++|.+++..|..+..+. .+++|++|++++|
T Consensus 231 Ls~N~l~~~~p~~~~~~~-------------------------------------------------~~~~L~~L~Ls~N 261 (310)
T 4glp_A 231 LSHNSLRATVNPSAPRCM-------------------------------------------------WSSALNSLNLSFA 261 (310)
T ss_dssp CTTSCCCCCCCSCCSSCC-------------------------------------------------CCTTCCCEECCSS
T ss_pred CCCCCCCccchhhHHhcc-------------------------------------------------CcCcCCEEECCCC
Confidence 555555544343333331 0234555555555
Q ss_pred cCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598 350 KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400 (536)
Q Consensus 350 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 400 (536)
.++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 555 3344332 5677777777777643 22 566677777777777765
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.3e-23 Score=201.49 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=49.0
Q ss_pred cccceEEccCCc-CcCCCcccccCCCCCCEEeCCCcc-CCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598 339 SLLSGLDLSCNK-LIGPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416 (536)
Q Consensus 339 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 416 (536)
++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+. .++..|
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L 298 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHL 298 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTS
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcce
Confidence 344444444444 333444455666777777777774 22111124566777777777777 4322222221 224555
Q ss_pred EccCCcCcccCCCCc
Q 045598 417 SVAYNNLSGEIPEWT 431 (536)
Q Consensus 417 ~l~~N~l~~~~~~~~ 431 (536)
++++|++++..|...
T Consensus 299 ~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 299 QINCSHFTTIARPTI 313 (336)
T ss_dssp EESCCCSCCTTCSSC
T ss_pred EEecccCccccCCcc
Confidence 677787777776654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.4e-23 Score=207.95 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=106.7
Q ss_pred cCCCCCccEEEccCCcCCCccchhh----hCC---------CCccEEEccccccc-cccc---ccccCCCCCCEEecCCC
Q 045598 235 FFNCSSLVTLDLSYNRLNGSISDWV----DGL---------SQLSHLILGHNNLE-GEVP---IQLCELNQLQLLDLSNN 297 (536)
Q Consensus 235 ~~~~~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~~L~l~~n 297 (536)
+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.++ ...+ ..+..+++|++|++++|
T Consensus 118 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4455666666666666543322222 222 66677777766665 2233 34556667777777777
Q ss_pred cCCCC-----CCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCc----CCCcccccCCCCCCEE
Q 045598 298 NLHGP-----IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI----GPIPLQIGNLTRIQTL 368 (536)
Q Consensus 298 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L 368 (536)
.++.. .+..+. .+++|++|++++|.++ ..+|..+..+++|+.|
T Consensus 198 ~l~~~g~~~l~~~~l~----------------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLA----------------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCCHHHHHHHHHTTGG----------------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCHhHHHHHHHHHhh----------------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 65521 111111 1456777777777764 4566677888888888
Q ss_pred eCCCccCCCC----Cccccc--CCCCCCEEeCCCCcccc----cCchhh-hCCCCCCEEEccCCcCcccCC
Q 045598 369 NLSHNNLTGS----IPSTFS--NLKYVESLDLSNNKLNG----KIPHQL-VELKTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 369 ~L~~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~~ 428 (536)
+|++|.+++. ++..+. .+++|++|+|++|++++ .+|..+ .++++|+.|++++|++++..+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8888888754 355553 37889999999998886 366666 568889999999998886553
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8.6e-21 Score=185.04 Aligned_cols=243 Identities=19% Similarity=0.148 Sum_probs=164.4
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE-EEc
Q 045598 24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF-LAL 102 (536)
Q Consensus 24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L 102 (536)
++++.++++++ ++|..++ ++++.|++++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56788888887 7887764 478888888888886666678888888888888888765677766677777665 445
Q ss_pred ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598 103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP 182 (536)
Q Consensus 103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 182 (536)
+.|+++.+.+..+..+++|++|++++|++....+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 567777666666677777777777777666544444444444555555432 223323
Q ss_pred CcccccCCC-CCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhC
Q 045598 183 IPVEFCQLD-LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261 (536)
Q Consensus 183 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 261 (536)
.+..|..+. .++.|++++|+++.+.+..+...+++.+.+.+++..+.++..+|..+++|++|++++|+++...+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 333333332 4566666777666666666666677777776544446777777899999999999999998655544
Q ss_pred CCCccEEEcccccccccccccccCCCCCCEEecCCC
Q 045598 262 LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNN 297 (536)
Q Consensus 262 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 297 (536)
+.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4556666665554444566 3788899999998754
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=8.5e-22 Score=178.49 Aligned_cols=192 Identities=22% Similarity=0.269 Sum_probs=115.8
Q ss_pred cEEEccCCcCCCccchhhhCCCCccEEEccccccccccc-ccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccc
Q 045598 242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320 (536)
Q Consensus 242 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 320 (536)
+.+++++|.++. +|..+ .+.++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..|..
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 467777777764 34333 2356777777777775533 34667777777777777776655555543
Q ss_pred eeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400 (536)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 400 (536)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus 80 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 80 -----------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp -----------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred -----------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 456666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCchhhhCCCCCCEEEccCCcCcccCCCCccccc-cCCccc-cccCcCCCCCCCCCCCCCCCCCcccCCCCcCcc
Q 045598 401 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA-TFNESS-YEGNTFLCGLPLPICRSPATMSEASIGNERDDN 474 (536)
Q Consensus 401 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~-l~~n~~~c~~~l~~C~~~~~~~~~~~~~~~~~~ 474 (536)
+..|..|..+++|+.|++++|++.+..+-. .+. .++... ..++ +.|..|...++..+..+....
T Consensus 143 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~--~l~~~~~~~~~~~~~--------~~C~~P~~l~g~~l~~l~~~~ 208 (220)
T 2v70_A 143 TVAPGAFDTLHSLSTLNLLANPFNCNCYLA--WLGEWLRKKRIVTGN--------PRCQKPYFLKEIPIQDVAIQD 208 (220)
T ss_dssp CBCTTTTTTCTTCCEEECCSCCEECSGGGH--HHHHHHHHSCCBCCC--------CEEEESGGGTTEEGGGSCGGG
T ss_pred EECHHHhcCCCCCCEEEecCcCCcCCCchH--HHHHHHHhcCccccC--------CccCCChHHCCCChhhCCHHH
Confidence 666666666666666666666666533210 000 000000 1111 257788877777666555443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.7e-23 Score=204.25 Aligned_cols=247 Identities=19% Similarity=0.206 Sum_probs=151.5
Q ss_pred cCChhHhhcCCCCcEEEccCCCCcccC----CccCCCCCCCCEEEccCCc---CccccchhH------hhCCCCCCEEEc
Q 045598 36 HIPVEIADVLPSLYAFNNSMNALDGSI----PSSFGNMKFLQFLDLSNNH---LTGEIPEHL------AVGCVNLRFLAL 102 (536)
Q Consensus 36 ~~p~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~L 102 (536)
.++..+.. +++|+.|++++|.+++.. +..+.++++|++|++++|. +++.+|..+ +..+++|++|+|
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 44444444 567777777777766542 2346677777777777753 333444443 245677777777
Q ss_pred ccCccCc----cCCccccCCCCCCEEEccCCcCcccCCcC----CCCC---------CccCeeecccCcCCC-CCC---c
Q 045598 103 SNNNLQG----HMFSRNFNLTNLKWLQLEGSRFVGEIPQS----LSKC---------SSLEGLYLNNNSLSG-KIP---R 161 (536)
Q Consensus 103 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l---------~~L~~L~l~~n~~~~-~~~---~ 161 (536)
++|.++. ..+..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+.. ..+ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 7777665 23344556667777777777664322222 2222 566666666666642 222 2
Q ss_pred ccCCCCCCCeEEccCCcccc-----CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccC
Q 045598 162 WLGNLTRLQCIIMPNNHLEG-----PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236 (536)
Q Consensus 162 ~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 236 (536)
.+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++... ...++. .+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~-~l~ 241 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAI-ALK 241 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHH-HGG
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHH-HHc
Confidence 34455666666666666552 12224555666666666666553110 012333 267
Q ss_pred CCCCccEEEccCCcCCCc----cchhhhC--CCCccEEEcccccccc----cccccc-cCCCCCCEEecCCCcCCCCC
Q 045598 237 NCSSLVTLDLSYNRLNGS----ISDWVDG--LSQLSHLILGHNNLEG----EVPIQL-CELNQLQLLDLSNNNLHGPI 303 (536)
Q Consensus 237 ~~~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~ 303 (536)
.+++|++|++++|.+++. ++..+.. +++|+.|++++|.+++ .+|..+ ..+++|+.|++++|++++..
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 788899999999888754 4555543 8889999999999886 366666 56899999999999888654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.2e-21 Score=181.94 Aligned_cols=150 Identities=23% Similarity=0.375 Sum_probs=80.2
Q ss_pred CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315 (536)
Q Consensus 236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 315 (536)
..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.+++..+ +..
T Consensus 82 ~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~------ 149 (308)
T 1h6u_A 82 KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG------ 149 (308)
T ss_dssp TTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG------
T ss_pred ccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC------
Confidence 3444444444444444432 1344445555555555554432 2 14455555555555555543322 111
Q ss_pred ccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCC
Q 045598 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395 (536)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 395 (536)
+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 150 ----------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 150 ----------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK 203 (308)
T ss_dssp ----------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECT
T ss_pred ----------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEcc
Confidence 4455555665555554322 5666666777777766664432 5666677777777
Q ss_pred CCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 396 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 425 (536)
+|++++..+ +..+++|+.|++++|++++
T Consensus 204 ~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 204 NNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 776664432 5666777777777776664
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=186.66 Aligned_cols=203 Identities=17% Similarity=0.135 Sum_probs=131.1
Q ss_pred CCCcCEEEccCCcCcccCChhHh-hcCCCCcEEEccCCCCcccCC----ccCCCCCCCCEEEccCCcCccccchhHhhCC
Q 045598 20 HKRLGMLDISNNNFRGHIPVEIA-DVLPSLYAFNNSMNALDGSIP----SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGC 94 (536)
Q Consensus 20 ~~~L~~L~ls~~~~~~~~p~~~~-~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 94 (536)
+++|++|++++|.+.+..|..++ ..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++ .++...++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccC
Confidence 35577777777777766666653 346677777777777765433 33456777777777777776 4444444677
Q ss_pred CCCCEEEcccCccCcc---C-CccccCCCCCCEEEccCCcCcccCC--c-CCCCCCccCeeecccCcCCCCCCcccCCC-
Q 045598 95 VNLRFLALSNNNLQGH---M-FSRNFNLTNLKWLQLEGSRFVGEIP--Q-SLSKCSSLEGLYLNNNSLSGKIPRWLGNL- 166 (536)
Q Consensus 95 ~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~L~~n~i~~~~~--~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l- 166 (536)
++|++|++++|.+.+. . ...+..+++|++|++++|+++...+ . .+..+++|++|++++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 7777777777776531 1 2223566777777777777752211 1 24566777777777777776656555555
Q ss_pred --CCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCC
Q 045598 167 --TRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 227 (536)
Q Consensus 167 --~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 227 (536)
++|++|++++|+++. .|..+. ++|+.|++++|++++. +....+++|+.|++++|.+.
T Consensus 249 ~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 577777777777773 344442 6777777777777754 23345677777777777764
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.3e-22 Score=194.36 Aligned_cols=246 Identities=20% Similarity=0.224 Sum_probs=173.9
Q ss_pred CCeEEccCCccccCCcccccCC--CCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCc-ccccccCCCCCccEEE
Q 045598 169 LQCIIMPNNHLEGPIPVEFCQL--DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLD 245 (536)
Q Consensus 169 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~ 245 (536)
++.++++++.+. +..+..+ ++++.+++++|.+.+..+..+...+|+.|++++|.+.+. ++. .+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEe
Confidence 444455444433 2233333 455555555555555555555555666666666655433 333 377889999999
Q ss_pred ccCCcCCCccchhhhCCCCccEEEcccc-ccccc-ccccccCCCCCCEEecCCC-cCCCC-CCccccccchhhhccccce
Q 045598 246 LSYNRLNGSISDWVDGLSQLSHLILGHN-NLEGE-VPIQLCELNQLQLLDLSNN-NLHGP-IPSCFDNTTLHEKKQIREK 321 (536)
Q Consensus 246 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (536)
+++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~------------- 191 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA------------- 191 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-------------
Confidence 9999988778888888999999999999 67653 5666888999999999999 77642 122221
Q ss_pred eEEeeccceeeecccccc-ccceEEccCC--cCc-CCCcccccCCCCCCEEeCCCcc-CCCCCcccccCCCCCCEEeCCC
Q 045598 322 FEFTTKNIAYIYQGKVLS-LLSGLDLSCN--KLI-GPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKYVESLDLSN 396 (536)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 396 (536)
.++ +|++|++++| .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++
T Consensus 192 ---------------~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 192 ---------------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp ---------------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred ---------------hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 156 8999999999 455 3456677889999999999999 7767778899999999999999
Q ss_pred Cc-ccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc-ccCCccccccCcCCCC
Q 045598 397 NK-LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCG 450 (536)
Q Consensus 397 n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~l~~n~~~c~ 450 (536)
|. +.......+.++++|+.|++++| ++ ...+..+ ..+..+.+.+|.+...
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccc
Confidence 95 33333336788999999999999 33 2234444 3477888877776543
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.8e-20 Score=177.78 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=95.4
Q ss_pred CCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEE
Q 045598 46 PSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ 125 (536)
Q Consensus 46 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 125 (536)
++|+.|+++++.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. ..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 355566665555543 22 3555556666666665555 3443 34555555555555555532 2344555555555
Q ss_pred ccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcc
Q 045598 126 LEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205 (536)
Q Consensus 126 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 205 (536)
+++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 555555432 1 24455555555555555543221 4444555555555554443222 4444444444444444432
Q ss_pred cCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccc
Q 045598 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276 (536)
Q Consensus 206 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 276 (536)
. +. +..+++|++|++++|.+.+.. .+..+++|+.|++++|+++
T Consensus 188 ~------------------------~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 I------------------------SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp C------------------------GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred C------------------------hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 1 11 445556666666666655433 2455566666666666655
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=5.8e-21 Score=187.01 Aligned_cols=181 Identities=23% Similarity=0.197 Sum_probs=127.8
Q ss_pred cEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc-CCCCCCEEecCCCcCCCCCCccccccchhhhccccc
Q 045598 242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC-ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320 (536)
Q Consensus 242 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 320 (536)
+.++++++.++. +|..+ .+.++.|++++|.+++..+..+. .+++|+.|++++|.+++..+..|..
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 86 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence 466777776663 34332 23567777777777766666665 6777777777777777666555544
Q ss_pred eeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400 (536)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 400 (536)
+++|++|++++|.++...+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 87 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 87 -----------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp -----------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 567777777777777666667778888888888888888777778888888888888888888
Q ss_pred ccCchhh---hCCCCCCEEEccCCcCcccCCCCcccccc--CCccccccCcCCCCCCC
Q 045598 401 GKIPHQL---VELKTLEVFSVAYNNLSGEIPEWTAQFAT--FNESSYEGNTFLCGLPL 453 (536)
Q Consensus 401 ~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~l~l~~n~~~c~~~l 453 (536)
++.+..| ..+++|+.|++++|++++..+..+..++. ++.+++.+|||.|+|.+
T Consensus 150 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 6555555 46788888888888888655555555554 36788888888888853
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=6e-20 Score=179.08 Aligned_cols=200 Identities=19% Similarity=0.088 Sum_probs=161.5
Q ss_pred EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccC-CccCCCCCCCCE-EEccC
Q 045598 2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSI-PSSFGNMKFLQF-LDLSN 79 (536)
Q Consensus 2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~-L~L~~ 79 (536)
++-++++++ .+|..+ .+++++|+|++|+++ .+|...+..+++|++|+|++|.+.+.+ +.+|.++++++. +.+++
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 455667776 677665 478999999999999 888877777999999999999986544 457899998875 56677
Q ss_pred CcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccC-CcCcccCCcCCCCCC-ccCeeecccCcCCC
Q 045598 80 NHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEG-SRFVGEIPQSLSKCS-SLEGLYLNNNSLSG 157 (536)
Q Consensus 80 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~ 157 (536)
|+++ .++...+..+++|++|++++|.++...+..+....++..|++.+ +.+....+..|..+. .++.|++++|.+..
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8998 78777778999999999999999988777777778888999976 567766666777765 68899999999985
Q ss_pred CCCcccCCCCCCCeEEccC-CccccCCcccccCCCCCCEEEccCCcCcccC
Q 045598 158 KIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGSL 207 (536)
Q Consensus 158 ~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 207 (536)
. +......++|+++++.+ |.++.+.+..|.++++|+.|++++|+++...
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 4 44444567899999975 6777666778899999999999999987443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.7e-19 Score=164.45 Aligned_cols=156 Identities=24% Similarity=0.232 Sum_probs=104.8
Q ss_pred CccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319 (536)
Q Consensus 240 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 319 (536)
..+.++.+++.++. +|..+ .++|+.|++++|.+++..+..|..+++|++|++++|.++...+..|..
T Consensus 20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 34667887777763 34332 267788888888887766777777777888888777776555554443
Q ss_pred ceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcc
Q 045598 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399 (536)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 399 (536)
+++|++|++++|.+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++
T Consensus 87 ------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 87 ------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp ------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred ------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 456777777777776665666666777777777777776 4556666667777777777777
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcccC
Q 045598 400 NGKIPHQLVELKTLEVFSVAYNNLSGEI 427 (536)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 427 (536)
++..+..+..+++|+.|++++|++.+..
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6555556666667777777776666543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=162.65 Aligned_cols=162 Identities=26% Similarity=0.291 Sum_probs=132.4
Q ss_pred CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcc
Q 045598 238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQ 317 (536)
Q Consensus 238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 317 (536)
.++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------- 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK-------- 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence 357888888888888766677788888888888888888666666788888888888888888766655544
Q ss_pred ccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCC
Q 045598 318 IREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397 (536)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 397 (536)
+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 99 --------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 99 --------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred --------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 668888899888888777777888999999999999999777777888999999999999
Q ss_pred cccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc
Q 045598 398 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 434 (536)
Q Consensus 398 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 434 (536)
.+.+ .+++|+.|+++.|++++.+|..++.+
T Consensus 159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred Ceec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 8763 45678899999999999998876544
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.1e-19 Score=161.52 Aligned_cols=173 Identities=24% Similarity=0.245 Sum_probs=105.6
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598 24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS 103 (536)
Q Consensus 24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 103 (536)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45666666665 5555443 36677777777766555555666777777777777666 5555555566667777777
Q ss_pred cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045598 104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI 183 (536)
Q Consensus 104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 183 (536)
+|.++...+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 66666555555666666666666666666555555666666666666666666544444556666666666666543
Q ss_pred cccccCCCCCCEEEccCCcCcccCC
Q 045598 184 PVEFCQLDLLQILDISDNNISGSLP 208 (536)
Q Consensus 184 ~~~~~~l~~L~~L~l~~n~~~~~~~ 208 (536)
..+++|+.|+++.|++++..|
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBB
T ss_pred ----cCCCCHHHHHHHHHhCCceee
Confidence 223455555555555554433
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.6e-19 Score=183.54 Aligned_cols=148 Identities=26% Similarity=0.319 Sum_probs=94.0
Q ss_pred CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcc
Q 045598 238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQ 317 (536)
Q Consensus 238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 317 (536)
+++|++|++++|.+++ +|. +.. +|+.|++++|.+++ +|. .+++|+.|++++|.+++. |. .
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~-------- 158 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML-PE---L-------- 158 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---C--------
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC---c--------
Confidence 4666777777776665 444 333 67777777777764 444 466777777777776652 22 1
Q ss_pred ccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCC-------C
Q 045598 318 IREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYV-------E 390 (536)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~ 390 (536)
+++|++|++++|.+++ +|. |. ++|+.|+|++|.++ .+|. +.. +| +
T Consensus 159 --------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~ 210 (571)
T 3cvr_A 159 --------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEI 210 (571)
T ss_dssp --------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCE
T ss_pred --------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccce
Confidence 4567777777777765 444 54 67777777777777 3444 443 55 7
Q ss_pred EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc
Q 045598 391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 434 (536)
Q Consensus 391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 434 (536)
.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 211 ~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred EEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 7777777777 456666667777777777777777666655444
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=8.4e-19 Score=158.72 Aligned_cols=153 Identities=23% Similarity=0.276 Sum_probs=98.6
Q ss_pred cEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccce
Q 045598 242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREK 321 (536)
Q Consensus 242 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 321 (536)
+.++++++.++. +|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 345555555553 232221 45666666666666555555666666666666666666555555544
Q ss_pred eEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccc
Q 045598 322 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG 401 (536)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 401 (536)
+++|++|++++|.++...+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++
T Consensus 79 ----------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 79 ----------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp ----------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ----------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 4566666666666665555556677777777777777776666777777777777777777776
Q ss_pred cCchhhhCCCCCCEEEccCCcCcc
Q 045598 402 KIPHQLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 402 ~~~~~~~~l~~L~~L~l~~N~l~~ 425 (536)
..+..|..+++|+.|++++|++.+
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECHHHHhCCCCCCEEEeCCCCcCC
Confidence 666667777777777777777765
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=158.02 Aligned_cols=137 Identities=20% Similarity=0.318 Sum_probs=123.7
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
++.|++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.+..|..+++|+.|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 457999999999998 5678999999999999999999988888999999999999999999988889999999999999
Q ss_pred ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcCccc
Q 045598 418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDNL 475 (536)
Q Consensus 418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~ 475 (536)
+++|+++...+..+..+++++.+++.+|||.|+|.+. .|..|...+++.+.....+.+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~ 182 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF 182 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHe
Confidence 9999999887778888999999999999999999753 588898888887777665544
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=4.6e-19 Score=156.88 Aligned_cols=137 Identities=22% Similarity=0.338 Sum_probs=124.3
Q ss_pred cccceEEccCCcCcCCCcc-cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 339 SLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
..+++|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 4799999999999877664 589999999999999999998899999999999999999999998888899999999999
Q ss_pred ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcCccc
Q 045598 418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDNL 475 (536)
Q Consensus 418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~ 475 (536)
+++|++++..|..+..+++++.+++.+|+|.|+|++. .|..|...++..+..+..+.+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~ 182 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhc
Confidence 9999999999999999999999999999999999853 699999988887776665543
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.4e-19 Score=172.48 Aligned_cols=177 Identities=23% Similarity=0.226 Sum_probs=146.8
Q ss_pred cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCC-CCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFG-NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
-+.+++++++++ .+|..++. .++.|++++|.+++..+..+. ++++|++|+|++|+++ .++...+..+++|++|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~~---~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCCT---TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCccCCC---CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence 368999999998 78877654 789999999999988777887 8999999999999998 77766668899999999
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCccc---CCCCCCCeEEccCCc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL---GNLTRLQCIIMPNNH 178 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~ 178 (536)
|++|.++...+..+.++++|++|+|++|.+....+..|.++++|+.|++++|.+....+..| ..+++|++|++++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99999998888888899999999999999988888889999999999999999885444444 568889999999998
Q ss_pred cccCCcccccCCCC--CCEEEccCCcCc
Q 045598 179 LEGPIPVEFCQLDL--LQILDISDNNIS 204 (536)
Q Consensus 179 ~~~~~~~~~~~l~~--L~~L~l~~n~~~ 204 (536)
+....+..+..++. ++.|++++|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 88776677777766 377888877765
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=156.49 Aligned_cols=153 Identities=23% Similarity=0.241 Sum_probs=111.3
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598 24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIP-SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL 102 (536)
Q Consensus 24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 102 (536)
+.++++++.++ .+|..++. .++.|++++|.+++..+ ..|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~---~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCT---TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCCCC---CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence 57888888877 67765543 56788888888776544 45777788888888888777 555555567777777777
Q ss_pred ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598 103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181 (536)
Q Consensus 103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 181 (536)
++|.+++..+..+.++++|++|++++|++.+..|..|.++++|+.|++++|.+.+..|..|..+++|++|++++|.+..
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7777777666667777777777777777776667777777777777777777776666677777777777777776653
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=164.04 Aligned_cols=171 Identities=23% Similarity=0.357 Sum_probs=97.5
Q ss_pred CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598 18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL 97 (536)
Q Consensus 18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 97 (536)
..+++|+.|++++|.+. .++. + ..+++|+.|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTC
T ss_pred hhcCcccEEEccCCCcc-cChh-H-hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCC
Confidence 34556666666666665 3332 2 235666666666666654332 666666666666666665 3433 3456666
Q ss_pred CEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCC
Q 045598 98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN 177 (536)
Q Consensus 98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 177 (536)
++|++++|.++.. ..+..+++|++|++++|++.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 6666666666543 3455566666666666665543 345556666666666666654332 555666666666666
Q ss_pred ccccCCcccccCCCCCCEEEccCCcCc
Q 045598 178 HLEGPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
.+++. ..+..+++|+.|++++|++.
T Consensus 189 ~i~~l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 189 HISDL--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred cCCCC--hhhccCCCCCEEECcCCccc
Confidence 66533 23555666666666665554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.7e-18 Score=154.89 Aligned_cols=156 Identities=23% Similarity=0.270 Sum_probs=118.7
Q ss_pred ccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceE
Q 045598 265 LSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGL 344 (536)
Q Consensus 265 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 344 (536)
.+.++.+++.++ .+|..+. ++|+.|++++|.+++..+..+.. +++|++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~----------------------------l~~L~~L 69 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS----------------------------LINLKEL 69 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT----------------------------CTTCCEE
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC----------------------------ccCCcEE
Confidence 456777777776 4554433 67888888888888776766654 5678888
Q ss_pred EccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598 345 DLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 345 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 424 (536)
++++|.+....+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 88888887666667778888888888888888766667788888888888888887 66777778888888888888888
Q ss_pred ccCCCCccccccCCccccccCcCCCCCC
Q 045598 425 GEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 425 ~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
+..+..+..+++++.+++.+|||.|+|+
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7666667777788888888888888875
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=8.3e-18 Score=159.18 Aligned_cols=151 Identities=25% Similarity=0.371 Sum_probs=115.5
Q ss_pred cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhh
Q 045598 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE 314 (536)
Q Consensus 235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 314 (536)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++ .+..+++|++|++++|.+++. ..+..
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~----- 132 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVH----- 132 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGG-----
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcC-----
Confidence 5667788888888888875444 7778888888888888774 33 377888888888888887753 12221
Q ss_pred hccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeC
Q 045598 315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDL 394 (536)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (536)
+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++
T Consensus 133 -----------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 133 -----------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp -----------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred -----------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 56788888888888764 567888889999999998886544 888889999999
Q ss_pred CCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598 395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425 (536)
Q Consensus 395 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 425 (536)
++|++++. + .+..+++|+.|++++|+++.
T Consensus 186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 99988853 3 37888899999999998875
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.2e-18 Score=177.51 Aligned_cols=128 Identities=29% Similarity=0.398 Sum_probs=66.6
Q ss_pred cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhh
Q 045598 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE 314 (536)
Q Consensus 235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 314 (536)
+..+++|+.|+|++|.+.+. + .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~----- 151 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSR----- 151 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGS-----
T ss_pred hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcc-----
Confidence 44556666666666666532 2 45556666666666666653 2 2355556666666666655532 11111
Q ss_pred hccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeC
Q 045598 315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDL 394 (536)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (536)
+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++. ..+..+++|+.|+|
T Consensus 152 -----------------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 152 -----------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 204 (605)
T ss_dssp -----------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEC
T ss_pred -----------------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEc
Confidence 3455555555555554333 45555555555555555532 23455555555555
Q ss_pred CCCccc
Q 045598 395 SNNKLN 400 (536)
Q Consensus 395 ~~n~l~ 400 (536)
++|++.
T Consensus 205 ~~N~l~ 210 (605)
T 1m9s_A 205 FSQECL 210 (605)
T ss_dssp CSEEEE
T ss_pred cCCcCc
Confidence 555554
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1e-17 Score=171.74 Aligned_cols=183 Identities=23% Similarity=0.344 Sum_probs=142.6
Q ss_pred CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598 22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101 (536)
Q Consensus 22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 101 (536)
+++.|++++|+++ .+|..++ ++|+.|++++|.++ .+| ..+++|++|++++|.++ .+|. + .. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEE
T ss_pred CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEE
Confidence 8899999999888 4787664 58899999999888 556 45788999999999988 5777 4 33 899999
Q ss_pred cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181 (536)
Q Consensus 102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 181 (536)
+++|.++++.. .+++|++|++++|.+.+ +|. .+++|+.|++++|.+.+ +|. +. ++|++|++++|.++.
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence 99999887433 57889999999998885 444 56789999999999885 555 55 889999999998884
Q ss_pred CCcccccCCCCC-------CEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccc
Q 045598 182 PIPVEFCQLDLL-------QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 233 (536)
Q Consensus 182 ~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 233 (536)
.|. +.. +| +.|++++|.++.++...+.+++|+.|++++|.+.+.++..
T Consensus 195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 195 -LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 444 543 67 9999999999876655667888999999999887665543
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=3.8e-18 Score=164.83 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=129.5
Q ss_pred CCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEc
Q 045598 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHL 221 (536)
Q Consensus 142 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 221 (536)
+++|+.+++.+ .+......+|.++++|+.+++..|.+..+.+.+|.++.++..+....+.....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~--------------- 163 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF--------------- 163 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT---------------
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc---------------
Confidence 66666666655 55544455566666666666666665555555565555554444433211000
Q ss_pred cCCCCCCcccccccCCCCCcc-EEEccCCcCCCccchh-hh---CCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598 222 SKNMLHGQLKRGTFFNCSSLV-TLDLSYNRLNGSISDW-VD---GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296 (536)
Q Consensus 222 ~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~-~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 296 (536)
...+...+|..+.+|+ .+.+.... .++.. +. ...++..+.+.++-...........+++|+.+++++
T Consensus 164 -----~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 164 -----KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp -----STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred -----cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence 0112223344555555 33333211 11111 11 234555555554422211111112366777777777
Q ss_pred CcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCC-EEeCCCccC
Q 045598 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ-TLNLSHNNL 375 (536)
Q Consensus 297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l 375 (536)
|.++.+.+.+|.. +++|+++++.+| ++...+.+|.++++|+ .+++.+ .+
T Consensus 236 n~i~~I~~~aF~~----------------------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 236 TNATTIPDFTFAQ----------------------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp BCCCEECTTTTTT----------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred CCcceecHhhhhC----------------------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 7776666666655 456777777776 5556667788888888 888887 67
Q ss_pred CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598 376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418 (536)
Q Consensus 376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 418 (536)
+.+.+.+|.++++|+++++++|+++.+.+.+|.++++|+.+..
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7677788888888888888888888777888888888888753
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-17 Score=148.50 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=107.4
Q ss_pred CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315 (536)
Q Consensus 236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 315 (536)
..+++|++|++++|.+. .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 45567777788777777 334 4667777888888877654 2235677777888888777777655555443
Q ss_pred ccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc-CCCCCcccccCCCCCCEEeC
Q 045598 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKYVESLDL 394 (536)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 394 (536)
+++|++|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|++|++
T Consensus 111 ----------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 111 ----------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNI 166 (197)
T ss_dssp ----------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEEC
T ss_pred ----------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEEC
Confidence 5677777888777776667777788888888888887 553 33 5777888888888
Q ss_pred CCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598 395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 395 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 424 (536)
++|++++. + .+..+++|+.|++++|++.
T Consensus 167 ~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 88888753 3 5677888888888888765
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9e-18 Score=174.12 Aligned_cols=173 Identities=23% Similarity=0.353 Sum_probs=106.2
Q ss_pred cCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCC
Q 045598 17 IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN 96 (536)
Q Consensus 17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 96 (536)
+..+++|+.|++++|.+. .+| .+ ..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.++ .++ . +..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~-l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-S-LKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TG-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-T-STTCTT
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-h-hccCCC
Confidence 345566666666666665 444 23 236666777776666665433 666666777777666666 444 2 355666
Q ss_pred CCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccC
Q 045598 97 LRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176 (536)
Q Consensus 97 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 176 (536)
|++|+|++|.+... ..+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|++|++++
T Consensus 111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 66666666666643 3456666666666666666643 456666666666666666664433 66666666666666
Q ss_pred CccccCCcccccCCCCCCEEEccCCcCcc
Q 045598 177 NHLEGPIPVEFCQLDLLQILDISDNNISG 205 (536)
Q Consensus 177 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 205 (536)
|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 185 N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 185 NHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 666643 346666666666666666654
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=1.3e-16 Score=158.05 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=83.3
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI 318 (536)
Q Consensus 239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 318 (536)
.+|+.+.+... ++......+.++..++.+.+..+... .....|..+..++.+....+.+. ..+|..
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~--------- 295 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYG--------- 295 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTT---------
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccc---------
Confidence 45555555432 22223344555556666665544332 34445555666666555443221 112222
Q ss_pred cceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398 (536)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 398 (536)
..+|+.+.+..+ ++.....+|.++++|+.++|.++ ++.+...+|.++++|+.+++..+
T Consensus 296 -------------------~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 296 -------------------CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp -------------------CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred -------------------cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence 345555655443 33344566777777777777644 55455667777778888877766
Q ss_pred ccccCchhhhCCCCCCEEEccCC
Q 045598 399 LNGKIPHQLVELKTLEVFSVAYN 421 (536)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~l~~N 421 (536)
++.+...+|.++++|+.+++..+
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEehHHHhhCCCCCCEEEECCC
Confidence 65566777777778887777654
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=7.9e-18 Score=162.59 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=158.1
Q ss_pred CCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEE
Q 045598 166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 245 (536)
Q Consensus 166 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 245 (536)
+++|+++.+.. .++.+...+|.++++|+.+++++|.+..+ +..+|..+.++..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i------------------------~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL------------------------LPEALADSVTAIFIP 154 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE------------------------CTTSSCTTTCEEEEC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc------------------------chhhhcCCCceEEec
Confidence 88888888888 77777778888888888888888877633 344466666777666
Q ss_pred ccCCc----CCCccchhhhCCCCcc-EEEcccccc-cccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598 246 LSYNR----LNGSISDWVDGLSQLS-HLILGHNNL-EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319 (536)
Q Consensus 246 L~~n~----l~~~~~~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 319 (536)
...+. ........|.++..|+ .+.+..... .......-....+++.+.+.++-.. ..+..
T Consensus 155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~----~~~~~---------- 220 (329)
T 3sb4_A 155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN----ADFKL---------- 220 (329)
T ss_dssp TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH----HHHHH----------
T ss_pred CcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH----HHHHH----------
Confidence 65532 1222334455667777 555543221 1111111113456677777654211 00000
Q ss_pred ceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCC-EEeCCCCc
Q 045598 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVE-SLDLSNNK 398 (536)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~ 398 (536)
+ ...+++|+++++++|.++...+.+|.++++|++|+|.+| +..+.+.+|.++++|+ .+++.+ .
T Consensus 221 ------------l--~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 221 ------------I--RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp ------------H--HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred ------------H--HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 0 011578999999999999888889999999999999998 8878888999999999 999999 7
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccc
Q 045598 399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS 441 (536)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~ 441 (536)
++.+.+.+|.++++|+.+++++|+++...+..|..+++++.+.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 8878889999999999999999999988888888888887764
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=3.1e-17 Score=145.04 Aligned_cols=90 Identities=26% Similarity=0.381 Sum_probs=52.1
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
+++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 34455555555555555555555556666666666666655555555666666666666666655555555666666666
Q ss_pred ccCCcCcccC
Q 045598 418 VAYNNLSGEI 427 (536)
Q Consensus 418 l~~N~l~~~~ 427 (536)
+++|++++..
T Consensus 133 L~~N~l~c~c 142 (192)
T 1w8a_A 133 LASNPFNCNC 142 (192)
T ss_dssp CTTCCBCCSG
T ss_pred eCCCCccCcC
Confidence 6666665543
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.7e-17 Score=145.37 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=85.4
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598 45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL 124 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 124 (536)
+++|+.|++++|.++ .++ .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 345666666666665 333 4566666666666666554 332 2 2456666666666666665555556666666666
Q ss_pred EccCCcCcccCCcCCCCCCccCeeecccCc-CCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcC
Q 045598 125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 203 (536)
Q Consensus 125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 203 (536)
++++|.+.+..+..+..+++|++|++++|. +. ..+ .+..+++|++|++++|.+.+.. .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 666666655445555666666666666665 43 233 4555666666666666665322 455556666666666655
Q ss_pred c
Q 045598 204 S 204 (536)
Q Consensus 204 ~ 204 (536)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.9e-17 Score=152.06 Aligned_cols=167 Identities=22% Similarity=0.249 Sum_probs=126.9
Q ss_pred ccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecC
Q 045598 216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS 295 (536)
Q Consensus 216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 295 (536)
+..++++++.+.+ ++ .+..+++|++|++++|.++.. + .+..+++|+.|++++|.+++..+ +..+++|+.|+++
T Consensus 21 l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3344444444432 22 266778888999998888743 4 57788889999999998885444 8888899999999
Q ss_pred CCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccC
Q 045598 296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNL 375 (536)
Q Consensus 296 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 375 (536)
+|++++..+.. .++|++|++++|.+++. ..+..+++|+.|++++|++
T Consensus 94 ~N~l~~l~~~~-------------------------------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 94 RNRLKNLNGIP-------------------------------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp SSCCSCCTTCC-------------------------------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCC
T ss_pred CCccCCcCccc-------------------------------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcC
Confidence 99887543211 14788899999988863 3588889999999999999
Q ss_pred CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCccc
Q 045598 376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 426 (536)
Q Consensus 376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 426 (536)
++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 141 ~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 865 3688889999999999999866 6678889999999999988865
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=7e-16 Score=152.04 Aligned_cols=266 Identities=17% Similarity=0.169 Sum_probs=178.9
Q ss_pred CCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEE
Q 045598 118 LTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILD 197 (536)
Q Consensus 118 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 197 (536)
+..++.+.+.++ +..+...+|.++ +|+.+.+..+ +......+|.+ .+|+.+.+.. .+..+...+|.++.+|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 355666666543 344555566664 5777777554 54455556666 3577777765 55556667777788888888
Q ss_pred ccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccc
Q 045598 198 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 277 (536)
Q Consensus 198 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 277 (536)
+++|.++.+....|...+|+.+.+..+ + ..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++.
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 887777777777777777788877744 3 3677777889999999998875 55455667777 688999884 55665
Q ss_pred cccccccCCCCCCEEecCCCcCC-----CCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCc
Q 045598 278 EVPIQLCELNQLQLLDLSNNNLH-----GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 352 (536)
Q Consensus 278 ~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 352 (536)
.....|.++++|+.+++.++.+. ...+.+|.. +++|+.+++.+ .++
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~----------------------------c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG----------------------------CPKLARFEIPE-SIR 312 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT----------------------------CTTCCEECCCT-TCC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC----------------------------CccCCeEEeCC-ceE
Confidence 66778888999999988877654 233333433 45677777763 355
Q ss_pred CCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCC-CCCEEEccCCcCc
Q 045598 353 GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLS 424 (536)
Q Consensus 353 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 424 (536)
.....+|.++++|+.+.|..+ ++.+...+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+.
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 555667777777777777544 555556677777 777777777777666666666664 5667766666543
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.9e-17 Score=152.94 Aligned_cols=171 Identities=22% Similarity=0.271 Sum_probs=144.8
Q ss_pred CCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhc
Q 045598 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK 316 (536)
Q Consensus 237 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 316 (536)
.+.++..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~------- 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKD------- 83 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT-------
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hcc-------
Confidence 4556788899999988543 57789999999999999984 55 68899999999999999987654 433
Q ss_pred cccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCC
Q 045598 317 QIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396 (536)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 396 (536)
+++|++|++++|.+++..+ +.. ++|+.|++++|.+++. +.+..+++|++|++++
T Consensus 84 ---------------------l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 84 ---------------------LTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN 137 (263)
T ss_dssp ---------------------CSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTT
T ss_pred ---------------------CCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCC
Confidence 7899999999999986433 333 9999999999999964 4689999999999999
Q ss_pred CcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450 (536)
Q Consensus 397 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~ 450 (536)
|++++. + .+..+++|+.|++++|++++. ..+..+++++.+++.+|++.+.
T Consensus 138 N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 138 NKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 999965 3 688999999999999999987 5577899999999999998775
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.8e-15 Score=149.09 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=177.1
Q ss_pred CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598 20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99 (536)
Q Consensus 20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 99 (536)
+..++.+.+.. .++ .++...+..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 45666666653 344 4555555544 6777777654 555556667664 577777765 455 666666677777777
Q ss_pred EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179 (536)
Q Consensus 100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 179 (536)
++++.|.++.+...+|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ +......+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 77777777766666665 467777777643 55555667777777777777653 44344555666 677777773 345
Q ss_pred ccCCcccccCCCCCCEEEccCCcCc-----ccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCC
Q 045598 180 EGPIPVEFCQLDLLQILDISDNNIS-----GSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253 (536)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 253 (536)
..+...+|.++++|+.+.+.++.+. .+....| .+.+|+.+.+.++ + ..+...+|.+|++|+.+.+..+ ++.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I-RILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-EEEhhhhhcCCCCccEEEECcc-ccE
Confidence 5566677777777777777766554 3444555 5567777777743 3 3667777889999999999654 665
Q ss_pred ccchhhhCCCCccEEEcccccccccccccccCCC-CCCEEecCCCcC
Q 045598 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN-QLQLLDLSNNNL 299 (536)
Q Consensus 254 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 299 (536)
....+|.++ +|+.+++.+|.........|.+++ +++.|.+..+.+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 667788888 899999999888766667777774 788888876653
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.8e-15 Score=149.86 Aligned_cols=333 Identities=14% Similarity=0.158 Sum_probs=199.5
Q ss_pred cCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccc
Q 045598 36 HIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN 115 (536)
Q Consensus 36 ~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (536)
+++...|..+.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ ++.+...+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 45555555566777777753 355555566777777777777544 44 566666666777766655433 444455555
Q ss_pred cCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCE
Q 045598 116 FNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195 (536)
Q Consensus 116 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 195 (536)
.++..++....... ......+|.++.+|+.+.+..+. .......|.++++|+.+.+..+ +..+...+|.++..|+.
T Consensus 137 ~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 55543333222222 22334567777777777775543 2244456777777777777655 34355566777777777
Q ss_pred EEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccc
Q 045598 196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 275 (536)
Q Consensus 196 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 275 (536)
+.+..+... .....+....|+.+.+.... ..+...+|..+.+++.+.+..+... .....|..+..++.+......+
T Consensus 213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred eecCCCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence 766554332 33444455667777765443 2445556777777777777665433 4455666777777777665433
Q ss_pred cccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCC
Q 045598 276 EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI 355 (536)
Q Consensus 276 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 355 (536)
....|..+.+|+.+.+.++ ++.....+|.. +.+|+.+++..+ ++...
T Consensus 289 ---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~----------------------------c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 289 ---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFES----------------------------CTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp ---CTTTTTTCTTCCEEEECTT-CCEECTTTTTT----------------------------CTTCCEECCCTT-CCEEC
T ss_pred ---ccccccccccccccccccc-cceechhhhcC----------------------------CCCCCEEEeCCc-ccEEh
Confidence 2335667777777777643 44444555544 456777777543 55455
Q ss_pred cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598 356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416 (536)
Q Consensus 356 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 416 (536)
..+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 667777778888877665 55555667777778887777654 22 234556666666543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2e-19 Score=185.41 Aligned_cols=204 Identities=22% Similarity=0.190 Sum_probs=116.1
Q ss_pred CCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccE
Q 045598 164 GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243 (536)
Q Consensus 164 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 243 (536)
...++|+.|++++|++. ..|..+..+++|+.|++++|......+. .+. .+...+..+ ..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----ll~-----~~~~~~~~~-~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----LMR-----ALDPLLYEK-ETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----HHH-----HHCTGGGHH-HHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----HHH-----hcccccCCH-HHHHHHHhccc
Confidence 34556666666666665 4456666666666666644421000000 000 000111111 12445555555
Q ss_pred EE-ccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598 244 LD-LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322 (536)
Q Consensus 244 L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (536)
|+ ++.|.+ .+|+.+.+++|.++...+ ..|+.|++++|.+++. |. +..
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~------------- 461 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQ------------- 461 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGG-------------
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccc-------------
Confidence 55 333322 223334444454442211 2467777777777653 32 333
Q ss_pred EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK 402 (536)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 402 (536)
+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.
T Consensus 462 ---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 462 ---------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp ---------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred ---------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 567777777777777 566677777777777777777775 44 677777777777777777766
Q ss_pred C-chhhhCCCCCCEEEccCCcCcccCCC
Q 045598 403 I-PHQLVELKTLEVFSVAYNNLSGEIPE 429 (536)
Q Consensus 403 ~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 429 (536)
. |..+..+++|+.|++++|++++..|.
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 5 77777777777777777777765553
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=4.5e-16 Score=135.77 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=105.8
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 46899999999999987778889999999999999999988778899999999999999999988888889999999999
Q ss_pred ccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
+++|++++..+..+..+++++.+++.+|++.|+|+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999998777777789999999999999999886
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.7e-16 Score=134.44 Aligned_cols=87 Identities=25% Similarity=0.288 Sum_probs=60.4
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCc-ccccCCCCCCEEeCCCCcccccCc---hhhhCCCCC
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNNKLNGKIP---HQLVELKTL 413 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L 413 (536)
+++|++|++++|.+.+..|..+..+++|+.|++++|.+++... ..+..+++|++|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 4456666666666665556566667777777777777775422 567777788888888887775544 467778888
Q ss_pred CEEEccCCcCc
Q 045598 414 EVFSVAYNNLS 424 (536)
Q Consensus 414 ~~L~l~~N~l~ 424 (536)
+.|++++|.+.
T Consensus 150 ~~L~l~~n~~~ 160 (168)
T 2ell_A 150 TYLDGYDREDQ 160 (168)
T ss_dssp CEETTEETTSC
T ss_pred cEecCCCCChh
Confidence 88888888776
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.7e-18 Score=176.96 Aligned_cols=183 Identities=18% Similarity=0.215 Sum_probs=140.3
Q ss_pred CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCC-------------CcccCCccCCCCCCCCEEE-ccCCcCc
Q 045598 18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNA-------------LDGSIPSSFGNMKFLQFLD-LSNNHLT 83 (536)
Q Consensus 18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-L~~n~l~ 83 (536)
..+++|+.|++++|.++ .+|..+.. +++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 56788999999999997 88988887 7789999987664 4556677788888888888 5665443
Q ss_pred cccchhHh-----h--CCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCC
Q 045598 84 GEIPEHLA-----V--GCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156 (536)
Q Consensus 84 ~~~~~~~~-----~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 156 (536)
.++...+ . ....|++|++++|.+++. +. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 3322110 0 123588888888888864 33 788888888888888888 66778888888888888888888
Q ss_pred CCCCcccCCCCCCCeEEccCCccccCC-cccccCCCCCCEEEccCCcCcccCC
Q 045598 157 GKIPRWLGNLTRLQCIIMPNNHLEGPI-PVEFCQLDLLQILDISDNNISGSLP 208 (536)
Q Consensus 157 ~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~ 208 (536)
+ +| .+..+++|++|++++|++++.. |..+..+++|+.|++++|.+++.++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5 55 7888888888888888888776 7888888888888888888876544
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.1e-16 Score=133.27 Aligned_cols=138 Identities=25% Similarity=0.262 Sum_probs=112.1
Q ss_pred CCCCccEEEccCCcCC-CccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598 237 NCSSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315 (536)
Q Consensus 237 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 315 (536)
..++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3468889999999887 56677778888999999999998854 67888899999999999988766655433
Q ss_pred ccccceeEEeeccceeeeccccccccceEEccCCcCcCCC-cccccCCCCCCEEeCCCccCCCCCc---ccccCCCCCCE
Q 045598 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI-PLQIGNLTRIQTLNLSHNNLTGSIP---STFSNLKYVES 391 (536)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~ 391 (536)
+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++
T Consensus 94 ----------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 94 ----------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp ----------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred ----------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 678999999999988643 3778899999999999999996655 47899999999
Q ss_pred EeCCCCcccccCch
Q 045598 392 LDLSNNKLNGKIPH 405 (536)
Q Consensus 392 L~L~~n~l~~~~~~ 405 (536)
|++++|.+. ..|+
T Consensus 152 L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 152 LDGYDREDQ-EAPD 164 (168)
T ss_dssp ETTEETTSC-BCCS
T ss_pred ecCCCCChh-hccc
Confidence 999999887 4443
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=7e-16 Score=130.44 Aligned_cols=128 Identities=23% Similarity=0.271 Sum_probs=84.1
Q ss_pred CCccEEEccccccc-ccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccccc
Q 045598 263 SQLSHLILGHNNLE-GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLL 341 (536)
Q Consensus 263 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 341 (536)
++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+.. +++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~----------------------------l~~L 66 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK----------------------------LNKL 66 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC----------------------------CTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc----------------------------CCCC
Confidence 45666666666665 45555556666666666666666543 22222 4566
Q ss_pred ceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCC-CcccccCCCCCCEEeCCCCcccccCc---hhhhCCCCCCEEE
Q 045598 342 SGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKYVESLDLSNNKLNGKIP---HQLVELKTLEVFS 417 (536)
Q Consensus 342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ 417 (536)
++|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+
T Consensus 67 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 6677777766665666666677788888888877753 23667777888888888888776555 4677778888877
Q ss_pred ccC
Q 045598 418 VAY 420 (536)
Q Consensus 418 l~~ 420 (536)
+++
T Consensus 147 l~d 149 (149)
T 2je0_A 147 GYD 149 (149)
T ss_dssp TBC
T ss_pred CCC
Confidence 653
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=131.69 Aligned_cols=127 Identities=24% Similarity=0.289 Sum_probs=78.0
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598 24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS 103 (536)
Q Consensus 24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 103 (536)
+.+++++++++ .+|..++ ++|+.|++++|.++ .+|..|.++++|++|++++|.++ .++...+.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 46677777666 6665543 36666666666666 44566666666666666666666 4554444566666666666
Q ss_pred cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCC
Q 045598 104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156 (536)
Q Consensus 104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 156 (536)
+|.++...+..+.++++|++|++++|.+....+..|..+++|+.|++++|++.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666655555666666666666666666444445555566666666655543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=7.5e-15 Score=127.99 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=92.9
Q ss_pred cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598 23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL 102 (536)
Q Consensus 23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 102 (536)
.+.+++++++++ .+|..++ ++|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 467778777777 6675544 47788888888877666666777888888888888777 666665567777777777
Q ss_pred ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCC
Q 045598 103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG 157 (536)
Q Consensus 103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 157 (536)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7777776666666677777777777777765555556667777777777776654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.6e-16 Score=167.33 Aligned_cols=118 Identities=27% Similarity=0.361 Sum_probs=66.6
Q ss_pred ccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchh
Q 045598 234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313 (536)
Q Consensus 234 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 313 (536)
.+..+++|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---- 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS---- 291 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG----
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC----
Confidence 3555666666666666665 33333445666666666666666 55555666666666666666665 33444433
Q ss_pred hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccc
Q 045598 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTF 383 (536)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 383 (536)
+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+
T Consensus 292 ------------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 292 ------------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp ------------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ------------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 455666666666655 445556666666666666666665555444
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.3e-15 Score=128.72 Aligned_cols=129 Identities=26% Similarity=0.289 Sum_probs=102.2
Q ss_pred CCCccEEEccCCcCC-CccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhc
Q 045598 238 CSSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK 316 (536)
Q Consensus 238 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 316 (536)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 367888888888887 56677777888888888888888754 66788888888888888888755554432
Q ss_pred cccceeEEeeccceeeeccccccccceEEccCCcCcCC-CcccccCCCCCCEEeCCCccCCCCCc---ccccCCCCCCEE
Q 045598 317 QIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP-IPLQIGNLTRIQTLNLSHNNLTGSIP---STFSNLKYVESL 392 (536)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L 392 (536)
+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus 87 ---------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 87 ---------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ---------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred ---------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 56888889988888863 34778889999999999999987655 578889999999
Q ss_pred eCCC
Q 045598 393 DLSN 396 (536)
Q Consensus 393 ~L~~ 396 (536)
++++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 9864
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=3.1e-16 Score=166.75 Aligned_cols=180 Identities=23% Similarity=0.200 Sum_probs=98.3
Q ss_pred CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCC
Q 045598 183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL 262 (536)
Q Consensus 183 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 262 (536)
.+..+..++.|+.|++++|.+....+..+.+.+|+.|+|++|.+. .++.. |..+++|++|+|++|.++ .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 344555566666666666666544444445556666666666664 55544 778889999999999888 668888888
Q ss_pred CCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccc
Q 045598 263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS 342 (536)
Q Consensus 263 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 342 (536)
++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+.... ....
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~---------------------------~~~~ 344 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS---------------------------VTGL 344 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH---------------------------HHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc---------------------------hhhh
Confidence 89999999999887 6777788899999999999988877776654321 1122
Q ss_pred eEEccCCcCcCCCcccccCCCCCCEEeCCCc--------cCCCCCcccccCCCCCCEEeCCCCcc
Q 045598 343 GLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN--------NLTGSIPSTFSNLKYVESLDLSNNKL 399 (536)
Q Consensus 343 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l 399 (536)
.+++++|.+++.+|. .|+.|+++.| .+.+..+..+..+..++...+++|-+
T Consensus 345 ~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 345 IFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HHHHHHCCCCCCCCC------C-----------------------------------------CC
T ss_pred HHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 356677777666554 3445555555 22222333344444555555555554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=6.8e-15 Score=127.06 Aligned_cols=110 Identities=25% Similarity=0.253 Sum_probs=97.6
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 419 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 419 (536)
..+++++++|.++. +|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999885 565553 789999999999998888899999999999999999998888888999999999999
Q ss_pred CCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 420 ~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
+|++++..+..+..+++++.+++.+|||.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998888778889999999999999999986
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=2.6e-13 Score=134.32 Aligned_cols=299 Identities=11% Similarity=0.160 Sum_probs=149.2
Q ss_pred cCCccCCCCC-CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCc---cCccCCccccCCCCCCEEEccCCcCcccCC
Q 045598 61 SIPSSFGNMK-FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN---LQGHMFSRNFNLTNLKWLQLEGSRFVGEIP 136 (536)
Q Consensus 61 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 136 (536)
+...+|.+++ .|+.+.+..+ ++ .|....|.+|.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ +.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 3445666664 4777776543 44 5666666667777777666542 45555556666666666555443 233444
Q ss_pred cCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCc
Q 045598 137 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI 216 (536)
Q Consensus 137 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 216 (536)
.+|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +..+...+|.. .+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~--------------- 192 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK--------------- 192 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT---------------
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc---------------
Confidence 45555666666655432 22233344555555555555433 22233333432 34555544332
Q ss_pred cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchh-------------hhCCCCccEEEcccccccccccccc
Q 045598 217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW-------------VDGLSQLSHLILGHNNLEGEVPIQL 283 (536)
Q Consensus 217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~ 283 (536)
.. .+...+|..+.+++................ +.....+..+.+. +.++......|
T Consensus 193 --------~~--~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF 261 (394)
T 4gt6_A 193 --------VT--RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAF 261 (394)
T ss_dssp --------CC--EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTT
T ss_pred --------cc--ccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEccccee
Confidence 21 222333445555554444333221100000 0111223333332 12222334456
Q ss_pred cCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCC
Q 045598 284 CELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLT 363 (536)
Q Consensus 284 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 363 (536)
..+..|+.+.+.++. ......+|.. .+.|+.+.+.. .++.....+|.++.
T Consensus 262 ~~c~~L~~i~lp~~~-~~I~~~aF~~----------------------------c~~L~~i~l~~-~i~~I~~~aF~~c~ 311 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV-VSIGTGAFMN----------------------------CPALQDIEFSS-RITELPESVFAGCI 311 (394)
T ss_dssp TTCSSCCEEECCTTC-CEECTTTTTT----------------------------CTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred eecccccEEeccccc-ceecCccccc----------------------------ccccccccCCC-cccccCceeecCCC
Confidence 666666666665432 2223333332 34555565542 33334455666667
Q ss_pred CCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcC
Q 045598 364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423 (536)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 423 (536)
+|+.++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++.++..
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 7777776543 44445566777777777777543 5545566677777777777766543
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.55 E-value=5.7e-13 Score=131.85 Aligned_cols=335 Identities=12% Similarity=0.094 Sum_probs=196.7
Q ss_pred cCChhHhhcCC-CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc---CccccchhHhhCCCCCCEEEcccCccCccC
Q 045598 36 HIPVEIADVLP-SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH---LTGEIPEHLAVGCVNLRFLALSNNNLQGHM 111 (536)
Q Consensus 36 ~~p~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (536)
.++...|..++ .|+.+.+.. .++.+...+|.++++|+.+.+..+. ++ .++...|.++.+|+.+.+..+ ++.+.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence 45555555453 588888875 3666677888889999998887763 65 777777888888888777654 55567
Q ss_pred CccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCC
Q 045598 112 FSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191 (536)
Q Consensus 112 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 191 (536)
..++..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ +......+|.. .+|+.+.+..+-.. ....+|..+.
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcc
Confidence 778888888998888754 34355677888888888888654 33344445544 57888887665333 5556777788
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcc
Q 045598 192 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 271 (536)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 271 (536)
+++................+...... ......+.....+..+.+.. .+......+|.++..|+.+.+.
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECC
T ss_pred ccceecccccccccccceeecccccc-----------cccccccccccccceEEcCC-cceEcccceeeecccccEEecc
Confidence 88877765544332211111000000 00000011222333333322 1222233455566666666665
Q ss_pred cccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcC
Q 045598 272 HNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 351 (536)
Q Consensus 272 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 351 (536)
++... .....|.++++|+.+.+. +.++.....+|.. +.+|+.+++..+ +
T Consensus 274 ~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~----------------------------c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 274 DSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG----------------------------CISLKSIDIPEG-I 322 (394)
T ss_dssp TTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT----------------------------CTTCCEEECCTT-C
T ss_pred cccce-ecCcccccccccccccCC-CcccccCceeecC----------------------------CCCcCEEEeCCc-c
Confidence 44332 444456666666666664 2344344444443 345666666543 4
Q ss_pred cCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598 352 IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 352 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 424 (536)
+.....+|.++.+|+++.|..+ ++.+...+|.++++|+.+++.++... ..++....+|+.+.+..|.+.
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 4445567888888888888654 66566678888888888888887653 145667778888877766543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=2.5e-14 Score=123.92 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=92.7
Q ss_pred cceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccC
Q 045598 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420 (536)
Q Consensus 341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 420 (536)
-+.+++++|.+. .+|..+. ++|+.|+|++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888998886 5565554 7899999999999988888899999999999999999977777788899999999999
Q ss_pred CcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598 421 NNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 421 N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
|++++..+..+..+++++.+++.+|+|.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997777778888899999999999999875
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.8e-14 Score=125.34 Aligned_cols=134 Identities=21% Similarity=0.186 Sum_probs=98.3
Q ss_pred CcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCC
Q 045598 16 PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV 95 (536)
Q Consensus 16 ~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 95 (536)
.+.++++|+.|++++|+++ .+|. +....++|+.|++++|.+++. ..+.++++|++|++++|.++ .+|...+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 4567888999999999888 5553 555456899999999998865 57888899999999999888 67766667788
Q ss_pred CCCEEEcccCccCccCC-ccccCCCCCCEEEccCCcCcccCCc----CCCCCCccCeeecccCcC
Q 045598 96 NLRFLALSNNNLQGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQ----SLSKCSSLEGLYLNNNSL 155 (536)
Q Consensus 96 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~~ 155 (536)
+|++|++++|.++.... ..+..+++|++|++++|.+... |. .+..+++|+.|++++|..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888888865432 2566777777777777776633 33 255566666666665543
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.8e-14 Score=125.35 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=45.0
Q ss_pred ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc--cccCCCCCCEEeCCCCcccccCch----hhhCCCCC
Q 045598 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKYVESLDLSNNKLNGKIPH----QLVELKTL 413 (536)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L 413 (536)
+|++|++++|.+++..+..+..+++|++|++++|.++. .|. .+..+++|++|++++|+++ ..|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 34444444444443333334555666666666666653 333 5566666666666666665 3333 35666666
Q ss_pred CEEEccCCcCc
Q 045598 414 EVFSVAYNNLS 424 (536)
Q Consensus 414 ~~L~l~~N~l~ 424 (536)
+.||+++|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 66666666554
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4e-16 Score=138.75 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=107.5
Q ss_pred CCCccEEEccCCcCCCccch------hhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccc
Q 045598 238 CSSLVTLDLSYNRLNGSISD------WVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311 (536)
Q Consensus 238 ~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 311 (536)
.+.++.++++.+.+.+..+. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++. .|..+..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~-- 91 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV-- 91 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH--
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc--
Confidence 34455555555555544443 77888888888888888885 55 77788888888888888773 3333221
Q ss_pred hhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCc-ccccCCCCCC
Q 045598 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVE 390 (536)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 390 (536)
+++|++|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|+
T Consensus 92 --------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 92 --------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp --------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred --------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 4678888888888875 34 57778888888888888885432 4677888888
Q ss_pred EEeCCCCcccccCch----------hhhCCCCCCEEEccCCcCc
Q 045598 391 SLDLSNNKLNGKIPH----------QLVELKTLEVFSVAYNNLS 424 (536)
Q Consensus 391 ~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l~~N~l~ 424 (536)
+|++++|++++..|. .+..+++|+.|| +|.++
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 888888888765543 267788888776 56555
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.2e-13 Score=117.47 Aligned_cols=110 Identities=22% Similarity=0.192 Sum_probs=96.9
Q ss_pred CCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCE
Q 045598 288 QLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT 367 (536)
Q Consensus 288 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 367 (536)
+.+.+++++|.++..+ ..+ ++.|++|++++|.+++..|..|.++++|++
T Consensus 10 ~~~~l~~s~n~l~~ip-~~~------------------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~ 58 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP-TGI------------------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTR 58 (170)
T ss_dssp ETTEEECTTSCCSSCC-SCC------------------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCEEEeCCCCcCccC-ccC------------------------------CCCCcEEEcCCCcCCccChhhhcCcccCCE
Confidence 3578899998887543 322 357999999999999988999999999999
Q ss_pred EeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCC
Q 045598 368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428 (536)
Q Consensus 368 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 428 (536)
|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+
T Consensus 59 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred EECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999998888889999999999999999998888889999999999999999997654
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.5e-13 Score=114.92 Aligned_cols=91 Identities=24% Similarity=0.234 Sum_probs=83.4
Q ss_pred ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 417 (536)
++.|++|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 35799999999999998899999999999999999999987777889999999999999999977777799999999999
Q ss_pred ccCCcCcccCC
Q 045598 418 VAYNNLSGEIP 428 (536)
Q Consensus 418 l~~N~l~~~~~ 428 (536)
+++|++.+..+
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999996543
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.1e-15 Score=135.88 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=125.2
Q ss_pred hhCCCCccEEEcccccccccccc------cccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceee
Q 045598 259 VDGLSQLSHLILGHNNLEGEVPI------QLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYI 332 (536)
Q Consensus 259 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (536)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45567788888888888777665 89999999999999999986 33 4433
Q ss_pred eccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCc-hhhhCCC
Q 045598 333 YQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP-HQLVELK 411 (536)
Q Consensus 333 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 411 (536)
+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..++
T Consensus 69 -----l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 69 -----MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140 (198)
T ss_dssp -----HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred -----CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC
Confidence 689999999999998 567777778999999999999996 44 68889999999999999985443 5788999
Q ss_pred CCCEEEccCCcCcccCCCC----------ccccccCCccccccCcC
Q 045598 412 TLEVFSVAYNNLSGEIPEW----------TAQFATFNESSYEGNTF 447 (536)
Q Consensus 412 ~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~l~l~~n~~ 447 (536)
+|+.|++++|++++..|.. +..+++++.++ +|+.
T Consensus 141 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 9999999999998876653 55667777664 5553
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=6.9e-13 Score=128.96 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=92.9
Q ss_pred ceEEccCC-cCcCCCcccccCCCCCCEEeCCC-ccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598 342 SGLDLSCN-KLIGPIPLQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 419 (536)
Q Consensus 342 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 419 (536)
..++++++ .++. +|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|+++++.|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 7874 676 88899999999996 99998877889999999999999999998888899999999999999
Q ss_pred CCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598 420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 453 (536)
Q Consensus 420 ~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l 453 (536)
+|+|++..+..+..+. ++.+++.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999977666665454 89999999999999864
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=1.3e-10 Score=114.36 Aligned_cols=311 Identities=9% Similarity=0.026 Sum_probs=149.2
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598 45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL 124 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 124 (536)
..+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+ ++.+...+|... +|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 35777777764 456566677888888888888654 55 6777777665 5777666533 444555555443 67777
Q ss_pred EccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598 125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 204 (536)
.+..+. ......+|.+. +++.+.+..+ +.......|..+.+++.+.+............+. ... ...
T Consensus 119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--------~~~- 185 (379)
T 4h09_A 119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNK--------NKT- 185 (379)
T ss_dssp ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EET--------TSS-
T ss_pred cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccc--------ccc-
Confidence 776542 22333444443 4444444322 2223334455555555555443322100000000 000 000
Q ss_pred ccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc
Q 045598 205 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC 284 (536)
Q Consensus 205 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 284 (536)
..........+..+.+..... .+....+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++......|.
T Consensus 186 -~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 186 -ILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp -EEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred -eecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence 000000111222222222111 222333555566666666443 22233445556666666666544 3434445566
Q ss_pred CCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC
Q 045598 285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR 364 (536)
Q Consensus 285 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 364 (536)
.+.+|+.+.+..+ +......+|.. +.+|+.+.+.++.++.....+|.++.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~----------------------------c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSG----------------------------CSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTT----------------------------CTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred eeehhcccccccc-ceecccccccc----------------------------ccccccccccccccceehhhhhcCCCC
Confidence 6666666666432 22222333322 345555555555554444455555566
Q ss_pred CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCC
Q 045598 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL 410 (536)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 410 (536)
|+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+...+|.++
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 666665433 44344455556666665555433 443444455444
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.33 E-value=3.3e-10 Score=111.41 Aligned_cols=317 Identities=12% Similarity=0.084 Sum_probs=189.7
Q ss_pred cCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCC
Q 045598 17 IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN 96 (536)
Q Consensus 17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 96 (536)
+....+|+.+.+.. .++ .++...|..+.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .++...|.. .+
T Consensus 42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence 44567899999864 566 788888888999999999754 776777889988 6888887654 55 777777765 48
Q ss_pred CCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccC
Q 045598 97 LRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176 (536)
Q Consensus 97 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 176 (536)
|+.+.+..+ ++.+...++.+. +++...+..+ +......+|..+.+++.+.+..+.........+ .....
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~------- 183 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LYNKN------- 183 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EEETT-------
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce-ecccc-------
Confidence 999999765 444555566554 5777766554 344556678888888888776543221100000 00000
Q ss_pred CccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccc
Q 045598 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256 (536)
Q Consensus 177 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 256 (536)
......+.....+..+.+.................++.+.+..+- ..+...+|..+.+|+.+.+..+ ++....
T Consensus 184 ----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 184 ----KTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ----SSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ----cceeccccccccccccccccceeEEeecccccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCc
Confidence 011112222233333333222111111111123344444443321 1344445667777777777654 444445
Q ss_pred hhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccc
Q 045598 257 DWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGK 336 (536)
Q Consensus 257 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (536)
.+|.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.+...+|..
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~--------------------------- 308 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD--------------------------- 308 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT---------------------------
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC---------------------------
Confidence 56667777777777543 44344556777777777777766666555666655
Q ss_pred cccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCC
Q 045598 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYV 389 (536)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 389 (536)
+.+|+.+++..+ ++.....+|.++++|+++.+..+ ++.+...+|.++..+
T Consensus 309 -c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 309 -CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp -CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred -CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 456777777543 44455677888888998888655 554556677776443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=5.3e-12 Score=122.70 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred ccccceEEccC-CcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598 338 LSLLSGLDLSC-NKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416 (536)
Q Consensus 338 ~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 416 (536)
+++|++|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 56899999996 999988889999999999999999999999999999999999999999999977777777666 9999
Q ss_pred EccCCcCcccCC-CCccccccCCccccccCcCCCCCC
Q 045598 417 SVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLP 452 (536)
Q Consensus 417 ~l~~N~l~~~~~-~~~~~~~~l~~l~l~~n~~~c~~~ 452 (536)
++++|++.+... .++..+.......+..+.+.|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 999999987433 122222222334455567777543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2e-13 Score=133.13 Aligned_cols=165 Identities=21% Similarity=0.197 Sum_probs=98.4
Q ss_pred CCccEEEccCCcCCCccchhhhC-----CCCccEEEcccccccccccccc-cCCCCCCEEecCCCcCCCCCCccccccch
Q 045598 239 SSLVTLDLSYNRLNGSISDWVDG-----LSQLSHLILGHNNLEGEVPIQL-CELNQLQLLDLSNNNLHGPIPSCFDNTTL 312 (536)
Q Consensus 239 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 312 (536)
++|++|++++|.++......+.. .++|++|++++|.++......+ ..+++|+.|++++|.++......+...-
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L- 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL- 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence 45667777777665433332222 2567777777776654332222 2345677777777766533222221100
Q ss_pred hhhccccceeEEeeccceeeeccccccccceEEccCCcCcCC----CcccccCCCCCCEEeCCCccCCCC----Cccccc
Q 045598 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP----IPLQIGNLTRIQTLNLSHNNLTGS----IPSTFS 384 (536)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~ 384 (536)
....+.|++|++++|.++.. ++..+..+++|++|+|++|.+++. +...+.
T Consensus 151 ----------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 151 ----------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp ----------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred ----------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 00134677777777776542 233446677888888888887642 244566
Q ss_pred CCCCCCEEeCCCCcccccC----chhhhCCCCCCEEEccCCcCccc
Q 045598 385 NLKYVESLDLSNNKLNGKI----PHQLVELKTLEVFSVAYNNLSGE 426 (536)
Q Consensus 385 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~ 426 (536)
..++|++|+|++|.+++.. ...+...++|+.|++++|.++..
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 6778888888888887532 33445568888888888888753
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=3.1e-13 Score=131.84 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=96.2
Q ss_pred CCCCcEEEccCCCCcccCCccC----C-CCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccc----
Q 045598 45 LPSLYAFNNSMNALDGSIPSSF----G-NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN---- 115 (536)
Q Consensus 45 l~~L~~L~l~~n~~~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 115 (536)
++.|+.|++++|.++......+ . ..++|++|+|++|.+++.....+...+.+|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3577888888887765333222 2 226788888888877644344444455677888888887765433333
Q ss_pred -cCCCCCCEEEccCCcCccc----CCcCCCCCCccCeeecccCcCCCCC----CcccCCCCCCCeEEccCCccccCC---
Q 045598 116 -FNLTNLKWLQLEGSRFVGE----IPQSLSKCSSLEGLYLNNNSLSGKI----PRWLGNLTRLQCIIMPNNHLEGPI--- 183 (536)
Q Consensus 116 -~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~--- 183 (536)
...++|++|++++|.+... ++..+..+++|++|++++|.+.+.. ...+...++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2456777777777776532 2233355667777777777765322 334455566777777777665322
Q ss_pred -cccccCCCCCCEEEccCCcCc
Q 045598 184 -PVEFCQLDLLQILDISDNNIS 204 (536)
Q Consensus 184 -~~~~~~l~~L~~L~l~~n~~~ 204 (536)
...+...++|++|++++|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 223334566777777766665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.4e-09 Score=103.40 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=84.1
Q ss_pred cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc--CCCCCCEEecCCC--cCCCCCCcccccc
Q 045598 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC--ELNQLQLLDLSNN--NLHGPIPSCFDNT 310 (536)
Q Consensus 235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~~~~~~~~~~~~~ 310 (536)
+..+|+|+.|.++++.-. ..+. + .+++|+.|++..|.+.......+. .+|+|+.|+|+.+ ...+.. .+...
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l 242 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF 242 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence 456678888888776311 1222 2 267888888887777644433343 5788888887531 111110 00000
Q ss_pred chhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccc---cCCCCCCEEeCCCccCCCC----Ccccc
Q 045598 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI---GNLTRIQTLNLSHNNLTGS----IPSTF 383 (536)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~ 383 (536)
. .......+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+
T Consensus 243 ~-------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 243 R-------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp G-------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred H-------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 0 00001125667777777766654322222 2356677777777766642 22333
Q ss_pred cCCCCCCEEeCCCCcccccCchhhhC-CCCCCEEEccCCc
Q 045598 384 SNLKYVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNN 422 (536)
Q Consensus 384 ~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~N~ 422 (536)
..+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 304 ~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45566777777776665433333332 2 2445666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=1.1e-08 Score=98.64 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=102.9
Q ss_pred CCCCccEEEccCCcCC---------CccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598 237 NCSSLVTLDLSYNRLN---------GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF 307 (536)
Q Consensus 237 ~~~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 307 (536)
.+++|+.|.+.+.... +.+...+..+|+|+.|.+++|.-. ..+. +. +++|+.|++..+.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 4456666666543221 134466778899999999988422 2232 33 7899999998877543221111
Q ss_pred cccchhhhccccceeEEeeccceeeeccccccccceEEccC--CcCcCC-----Ccccc--cCCCCCCEEeCCCccCCCC
Q 045598 308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSC--NKLIGP-----IPLQI--GNLTRIQTLNLSHNNLTGS 378 (536)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~ 378 (536)
.. ..+++|++|+|+. +...+. +...+ ..+++|+.|+|++|.+.+.
T Consensus 214 ~~--------------------------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 214 LG--------------------------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp HH--------------------------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred HH--------------------------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence 10 1267899999863 221111 11122 3479999999999988743
Q ss_pred Ccccc---cCCCCCCEEeCCCCcccccC----chhhhCCCCCCEEEccCCcCccc
Q 045598 379 IPSTF---SNLKYVESLDLSNNKLNGKI----PHQLVELKTLEVFSVAYNNLSGE 426 (536)
Q Consensus 379 ~~~~~---~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~ 426 (536)
.+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++..
T Consensus 268 ~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 22222 35789999999999988643 33335679999999999988753
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.43 E-value=1.4e-07 Score=76.34 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=34.3
Q ss_pred CCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCC------------------CCCCCCCCCCcccCCCCcCcc
Q 045598 413 LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL------------------PICRSPATMSEASIGNERDDN 474 (536)
Q Consensus 413 L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l------------------~~C~~~~~~~~~~~~~~~~~~ 474 (536)
|+.|+|++|+|+...+..+..+++++.+++.+|||.|+|.+ ..|..|..++++.+..+..++
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~ 112 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDE 112 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHH
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHH
Confidence 34444444444433333333444444455555566666643 258899988888776666544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=4.2e-08 Score=85.36 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=19.4
Q ss_pred hhCCCCccEEEcccc-ccccc----ccccccCCCCCCEEecCCCcCC
Q 045598 259 VDGLSQLSHLILGHN-NLEGE----VPIQLCELNQLQLLDLSNNNLH 300 (536)
Q Consensus 259 ~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 300 (536)
+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 333445555555555 44321 1222334455555555555543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=3.8e-08 Score=85.67 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=89.2
Q ss_pred ccccccCCCCCCEEecCCC-cCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCC--
Q 045598 279 VPIQLCELNQLQLLDLSNN-NLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI-- 355 (536)
Q Consensus 279 ~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 355 (536)
+...+...++|++|++++| .+.......+... ....+.|++|+|++|.+....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~------------------------L~~~~~L~~L~Ls~n~i~~~g~~ 83 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA------------------------LKTNTYVKKFSIVGTRSNDPVAF 83 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHH------------------------HTTCCSCCEEECTTSCCCHHHHH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHH------------------------HHhCCCcCEEECcCCCCChHHHH
Confidence 4445677899999999999 7764322221110 011467999999999987533
Q ss_pred --cccccCCCCCCEEeCCCccCCCC----CcccccCCCCCCEEeC--CCCccccc----CchhhhCCCCCCEEEccCCcC
Q 045598 356 --PLQIGNLTRIQTLNLSHNNLTGS----IPSTFSNLKYVESLDL--SNNKLNGK----IPHQLVELKTLEVFSVAYNNL 423 (536)
Q Consensus 356 --~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l 423 (536)
...+...++|++|+|++|.+.+. +...+...++|++|+| ++|.+... +...+...++|+.|++++|.+
T Consensus 84 ~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 84 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34456678999999999999853 3456777889999999 88998754 334556678999999999987
Q ss_pred cc
Q 045598 424 SG 425 (536)
Q Consensus 424 ~~ 425 (536)
..
T Consensus 164 ~~ 165 (185)
T 1io0_A 164 GP 165 (185)
T ss_dssp HH
T ss_pred Ch
Confidence 63
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=8.2e-07 Score=81.13 Aligned_cols=62 Identities=29% Similarity=0.380 Sum_probs=30.7
Q ss_pred ccccceEEccCCcCcC--CCcccccCCCCCCEEeCCCccCCCCCcccccCCC--CCCEEeCCCCcccc
Q 045598 338 LSLLSGLDLSCNKLIG--PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK--YVESLDLSNNKLNG 401 (536)
Q Consensus 338 ~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~ 401 (536)
++.|++|+|++|.+++ .++..+..+++|+.|+|++|.+.+. +.+..+. +|++|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 3455555555555554 2233344555555555555555543 2222222 55555555555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=1.3e-07 Score=86.44 Aligned_cols=96 Identities=23% Similarity=0.328 Sum_probs=67.5
Q ss_pred EEccCCcCc---CCCcccccCCCCCCEEeCCCccCCCC--CcccccCCCCCCEEeCCCCcccccCchhhhCCC--CCCEE
Q 045598 344 LDLSCNKLI---GPIPLQIGNLTRIQTLNLSHNNLTGS--IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK--TLEVF 416 (536)
Q Consensus 344 L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L 416 (536)
++++.|... ...+.....+++|+.|+|++|.+++. ++..+..+++|+.|+|++|++++. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 556666322 22222235688999999999999973 346677899999999999999865 2334444 89999
Q ss_pred EccCCcCcccCCC-------CccccccCCccc
Q 045598 417 SVAYNNLSGEIPE-------WTAQFATFNESS 441 (536)
Q Consensus 417 ~l~~N~l~~~~~~-------~~~~~~~l~~l~ 441 (536)
++++|++.+..|. .+..+++++.++
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999999976653 234456665543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=2.5e-07 Score=78.34 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=68.1
Q ss_pred cccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc-CCCCCcccccCC----CCCCEEeCCCCc-ccccCchhhhCCCC
Q 045598 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL----KYVESLDLSNNK-LNGKIPHQLVELKT 412 (536)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 412 (536)
..|++||+++|.++...-..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 369999999999988777778899999999999995 665333344443 479999999984 88766667788999
Q ss_pred CCEEEccCCc
Q 045598 413 LEVFSVAYNN 422 (536)
Q Consensus 413 L~~L~l~~N~ 422 (536)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.3e-06 Score=73.86 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=48.3
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc-CccccchhHhhCC----CCCCEEEcccCc-cCccCCccccCCCC
Q 045598 47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH-LTGEIPEHLAVGC----VNLRFLALSNNN-LQGHMFSRNFNLTN 120 (536)
Q Consensus 47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 120 (536)
.|+.||++++.+++.....+.++++|++|+|++|. +++..-..+ ..+ ++|++|+|++|. ++......+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56777777777666555566677777777777764 553222223 222 356677776653 55444444555666
Q ss_pred CCEEEccCC
Q 045598 121 LKWLQLEGS 129 (536)
Q Consensus 121 L~~L~L~~n 129 (536)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666655
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.0011 Score=53.15 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=37.5
Q ss_pred ceEEccCCcCc-CCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598 342 SGLDLSCNKLI-GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400 (536)
Q Consensus 342 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 400 (536)
..++.+++.++ ..+|..+. ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35667777665 23454333 36777777777777666666777777777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.02 E-value=0.00017 Score=62.17 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCcEEEccCC-CCcc----cCCccCCCCCCCCEEEccCCcCcccc----chhHhhCCCCCCEEEcccCccCccC----C
Q 045598 46 PSLYAFNNSMN-ALDG----SIPSSFGNMKFLQFLDLSNNHLTGEI----PEHLAVGCVNLRFLALSNNNLQGHM----F 112 (536)
Q Consensus 46 ~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~ 112 (536)
+.|+.|+|+++ .+.+ .+..++...+.|+.|+|++|.+.+.. .+.+ ..-+.|++|+|+.|.|.... .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCCHHHHHHHH
Confidence 45666666653 5443 23344555666666666666665321 1112 23355667777766665432 2
Q ss_pred ccccCCCCCCEEEccCCc---Cccc----CCcCCCCCCccCeeecccCc
Q 045598 113 SRNFNLTNLKWLQLEGSR---FVGE----IPQSLSKCSSLEGLYLNNNS 154 (536)
Q Consensus 113 ~~~~~l~~L~~L~L~~n~---i~~~----~~~~~~~l~~L~~L~l~~n~ 154 (536)
.++..-+.|++|+|+++. +... +..++..-++|+.|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 234444567777776542 2211 12334455677777776554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.82 E-value=0.00033 Score=60.36 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=61.0
Q ss_pred ccccceEEccCC-cCcCC----CcccccCCCCCCEEeCCCccCCCC----CcccccCCCCCCEEeCCCCcccccC----c
Q 045598 338 LSLLSGLDLSCN-KLIGP----IPLQIGNLTRIQTLNLSHNNLTGS----IPSTFSNLKYVESLDLSNNKLNGKI----P 404 (536)
Q Consensus 338 ~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~ 404 (536)
-+.|++|+|++| .+... +.+.+...+.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|.... -
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 357899999885 66532 345567778999999999998743 2334455588999999999987532 2
Q ss_pred hhhhCCCCCCEEEccCCc
Q 045598 405 HQLVELKTLEVFSVAYNN 422 (536)
Q Consensus 405 ~~~~~l~~L~~L~l~~N~ 422 (536)
+++..-+.|+.|++++|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHTTTTCCCSEEECCCCS
T ss_pred HHHhhCCceeEEECCCCc
Confidence 345556779999998763
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.88 E-value=9 Score=28.40 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=27.3
Q ss_pred CcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCC
Q 045598 351 LIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397 (536)
Q Consensus 351 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 397 (536)
++.....+|.++.+|+.+.|-.+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44444556666677777766554 33344556666666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.88 E-value=6 Score=29.41 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=38.1
Q ss_pred CccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCC
Q 045598 372 HNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 421 (536)
Q Consensus 372 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 421 (536)
+..++.+-..+|.++.+|+++.+-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44566666778999999999998875 45577788888999988887764
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.77 E-value=26 Score=20.54 Aligned_cols=15 Identities=0% Similarity=-0.190 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHHHHh
Q 045598 484 TFTTSYVIVIFATVI 498 (536)
Q Consensus 484 ~~~~~~~~~~~~~~~ 498 (536)
.++++.++.+.+++.
T Consensus 15 GiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 15 AVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 333333333333333
No 168
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=28.46 E-value=27 Score=23.18 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=5.5
Q ss_pred HHHhhhhhcchhhH
Q 045598 495 ATVIILYVNSYWRR 508 (536)
Q Consensus 495 ~~~~~~~~~~~~~~ 508 (536)
+.+.+++..+||++
T Consensus 24 ~glcI~ccvkcrhR 37 (70)
T 2klu_A 24 IGLGIFFSVRSRHR 37 (70)
T ss_dssp HHHHHHHHHHSSCC
T ss_pred HHHHHHHhhHHHHH
Confidence 33333333344443
Done!