BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045600
(899 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 730 GYGLYGD----------GEAALE-LFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMV 778
GYGL GD GE AL + ++ +GV+P EI+Y+ + + G ++K +
Sbjct: 289 GYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAI 348
Query: 779 FKSMVEHGISQKMEHY-ACMVDLLGRTGHLNEAFI----FVKKLP 818
+H + + LLG G + AF + +KLP
Sbjct: 349 KHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLP 393
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 730 GYGLYGD----------GEAALE-LFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMV 778
GYGL GD GE AL + ++ +GV+P EI+Y+ + + G ++K +
Sbjct: 283 GYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAI 342
Query: 779 FKSMVEHGISQKMEHY-ACMVDLLGRTGHLNEAFI----FVKKLP 818
+H + + LLG G + AF + +KLP
Sbjct: 343 KHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLP 387
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 730 GYGLYGDGE-----------AALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMV 778
GYG+ GD A L + + ++ SG+ PN+I Y+ + + G +++ +
Sbjct: 276 GYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAI 335
Query: 779 FKSMVEHGISQKMEHYACMVDLLGRTGHL 807
EH S + G TGHL
Sbjct: 336 KTVFSEHATSGTL----AFSSTKGATGHL 360
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 636 AKQAVAFFTELLGA-----GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHV 690
++ ++ FF +LGA + P N I + L+NS+N++ + FV +KGL K +
Sbjct: 82 SENSLQFFMPVLGALFIGVAVAPAN----DIYNERELLNSMNISQPTVVFVSKKGLQKIL 137
Query: 691 AVSNAL 696
V L
Sbjct: 138 NVQKKL 143
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 636 AKQAVAFFTELLGA-----GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHV 690
++ ++ FF +LGA + P N I + L+NS+N++ + FV +KGL K +
Sbjct: 82 SENSLQFFMPVLGALFIGVAVAPAN----DIYNERELLNSMNISQPTVVFVSKKGLQKIL 137
Query: 691 AVSNAL 696
V L
Sbjct: 138 NVQKKL 143
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 636 AKQAVAFFTELLGA-----GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHV 690
++ ++ FF +LGA + P N I + L+NS+N++ + FV +KGL K +
Sbjct: 87 SENSLQFFMPVLGALFIGVAVAPAN----DIYNERELLNSMNISQPTVVFVSKKGLQKIL 142
Query: 691 AVSNAL 696
V L
Sbjct: 143 NVQKKL 148
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 459 GCSKLDDVLLGKSAHAFSLR--KGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSS 516
G K D V+ S + R K +V LD+ L+ S GG S AFTL
Sbjct: 76 GWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTL--------- 126
Query: 517 VSWNTLISRCVQNGAVEEAVILLQRMQKEGVE 548
W + + V G + L M EG++
Sbjct: 127 -KWPERVGKLVLMGGGTGGMSLFTPMPTEGIK 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,239,646
Number of Sequences: 62578
Number of extensions: 949546
Number of successful extensions: 2583
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2582
Number of HSP's gapped (non-prelim): 8
length of query: 899
length of database: 14,973,337
effective HSP length: 108
effective length of query: 791
effective length of database: 8,214,913
effective search space: 6497996183
effective search space used: 6497996183
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)