Query 045600
Match_columns 899
No_of_seqs 746 out of 4553
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 03:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-101 6E-106 919.7 79.0 685 109-899 48-733 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 9.3E-86 2E-90 786.3 67.6 591 94-691 134-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-69 2.7E-74 631.9 57.5 485 412-899 84-570 (697)
4 PLN03081 pentatricopeptide (PP 100.0 7.7E-70 1.7E-74 633.7 52.7 475 109-585 84-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 4.8E-67 1E-71 609.2 60.1 527 180-757 368-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 5.7E-65 1.2E-69 591.9 59.4 528 283-824 370-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-41 3.6E-46 417.4 86.1 791 84-889 25-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.7E-41 1.2E-45 412.6 89.0 777 92-884 101-898 (899)
9 PRK11447 cellulose synthase su 100.0 8.8E-24 1.9E-28 259.1 67.0 633 219-885 34-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.2E-23 2.7E-28 257.8 61.8 616 252-892 32-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 3.2E-22 6.8E-27 233.2 63.1 629 194-887 56-741 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.1E-20 2.4E-25 220.4 63.6 672 123-873 55-760 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.4E-19 3.1E-24 185.5 37.4 442 418-875 51-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 1.1E-16 2.3E-21 174.0 54.8 467 414-889 269-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 4.9E-19 1.1E-23 181.7 31.9 420 455-886 53-485 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 5.3E-17 1.1E-21 187.2 47.4 419 453-887 130-572 (615)
17 KOG4318 Bicoid mRNA stability 99.8 3.8E-16 8.3E-21 167.4 44.2 694 133-886 11-808 (1088)
18 KOG2002 TPR-containing nuclear 99.8 6.2E-15 1.3E-19 160.5 53.8 547 330-888 146-747 (1018)
19 PRK11788 tetratricopeptide rep 99.8 8.7E-18 1.9E-22 184.1 31.0 270 621-894 70-355 (389)
20 PRK15174 Vi polysaccharide exp 99.8 4.3E-16 9.4E-21 178.7 40.8 331 519-857 45-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 2.1E-15 4.6E-20 177.0 46.3 393 453-889 18-459 (765)
22 PRK15174 Vi polysaccharide exp 99.8 5E-16 1.1E-20 178.2 39.7 356 527-890 16-385 (656)
23 KOG4422 Uncharacterized conser 99.8 6.4E-15 1.4E-19 145.4 41.2 445 213-719 116-590 (625)
24 PRK11788 tetratricopeptide rep 99.8 2.3E-16 4.9E-21 172.9 32.6 165 625-792 185-354 (389)
25 KOG4422 Uncharacterized conser 99.8 2.2E-14 4.8E-19 141.6 42.1 445 313-817 115-587 (625)
26 KOG2076 RNA polymerase III tra 99.8 3E-13 6.5E-18 146.7 51.7 637 161-882 153-891 (895)
27 PRK10049 pgaA outer membrane p 99.8 1.1E-14 2.3E-19 171.2 44.6 411 418-861 18-465 (765)
28 KOG2076 RNA polymerase III tra 99.8 4.8E-13 1.1E-17 145.1 52.7 604 262-889 153-852 (895)
29 PRK14574 hmsH outer membrane p 99.8 6.5E-14 1.4E-18 160.7 49.1 175 392-573 42-225 (822)
30 KOG4318 Bicoid mRNA stability 99.8 1.4E-14 3.1E-19 155.6 40.3 629 234-884 11-734 (1088)
31 TIGR00990 3a0801s09 mitochondr 99.8 4.2E-14 9.2E-19 163.2 47.4 233 621-858 332-577 (615)
32 KOG0495 HAT repeat protein [RN 99.7 2.6E-10 5.6E-15 119.3 58.9 463 393-896 415-888 (913)
33 PRK14574 hmsH outer membrane p 99.7 1.2E-12 2.7E-17 150.3 45.9 452 360-874 45-534 (822)
34 KOG0495 HAT repeat protein [RN 99.7 1.2E-10 2.6E-15 121.8 51.2 421 459-890 385-850 (913)
35 KOG2003 TPR repeat-containing 99.6 4.6E-13 1E-17 133.1 30.4 477 361-879 213-715 (840)
36 KOG0547 Translocase of outer m 99.6 1E-11 2.3E-16 125.4 31.9 215 665-884 336-564 (606)
37 PF13429 TPR_15: Tetratricopep 99.5 2.5E-14 5.5E-19 147.9 10.9 255 627-885 15-276 (280)
38 KOG1915 Cell cycle control pro 99.5 8.2E-09 1.8E-13 104.3 44.5 456 389-852 78-585 (677)
39 KOG1126 DNA-binding cell divis 99.4 8.8E-12 1.9E-16 131.5 20.9 278 601-889 334-623 (638)
40 KOG1126 DNA-binding cell divis 99.4 1.6E-11 3.5E-16 129.5 22.3 246 635-886 334-586 (638)
41 PRK10747 putative protoheme IX 99.4 1.8E-10 3.8E-15 124.8 30.6 291 529-853 97-391 (398)
42 KOG1173 Anaphase-promoting com 99.4 2E-09 4.4E-14 111.5 36.1 261 619-885 243-517 (611)
43 KOG0985 Vesicle coat protein c 99.4 3E-07 6.6E-12 101.2 54.0 733 92-871 371-1327(1666)
44 KOG4162 Predicted calmodulin-b 99.4 5.4E-09 1.2E-13 112.3 39.9 411 478-896 316-792 (799)
45 PRK10747 putative protoheme IX 99.4 2.5E-10 5.5E-15 123.6 31.0 275 599-885 97-389 (398)
46 KOG1155 Anaphase-promoting com 99.4 2.4E-09 5.1E-14 108.1 34.9 248 630-885 272-535 (559)
47 KOG1915 Cell cycle control pro 99.4 3.1E-08 6.8E-13 100.2 42.6 459 417-884 75-583 (677)
48 TIGR00540 hemY_coli hemY prote 99.4 6.4E-11 1.4E-15 129.1 26.2 279 597-884 95-397 (409)
49 TIGR00540 hemY_coli hemY prote 99.4 3.9E-10 8.5E-15 122.9 31.0 292 527-852 95-399 (409)
50 KOG1155 Anaphase-promoting com 99.4 5.5E-09 1.2E-13 105.5 35.3 327 547-885 160-494 (559)
51 PF13429 TPR_15: Tetratricopep 99.4 2.1E-12 4.5E-17 133.6 11.7 254 592-852 14-277 (280)
52 KOG2003 TPR repeat-containing 99.4 2.5E-09 5.5E-14 106.9 31.5 447 421-886 207-689 (840)
53 KOG2047 mRNA splicing factor [ 99.3 1.8E-06 3.8E-11 91.2 51.4 302 283-606 102-445 (835)
54 TIGR02521 type_IV_pilW type IV 99.3 3.5E-10 7.5E-15 114.2 24.2 195 689-885 30-231 (234)
55 KOG0985 Vesicle coat protein c 99.3 2.8E-06 6.2E-11 93.8 53.5 663 190-883 368-1246(1666)
56 KOG0547 Translocase of outer m 99.3 1.6E-08 3.5E-13 102.8 33.6 221 630-854 336-568 (606)
57 KOG3616 Selective LIM binding 99.3 4E-06 8.6E-11 89.5 51.9 121 762-882 1245-1387(1636)
58 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.8E-13 101.5 31.6 287 529-850 97-388 (400)
59 COG2956 Predicted N-acetylgluc 99.3 4.6E-09 9.9E-14 101.3 26.3 299 528-893 47-354 (389)
60 PF13041 PPR_2: PPR repeat fam 99.3 6E-12 1.3E-16 90.3 5.0 50 211-260 1-50 (50)
61 PF13041 PPR_2: PPR repeat fam 99.3 7.4E-12 1.6E-16 89.8 4.8 50 110-159 1-50 (50)
62 KOG1129 TPR repeat-containing 99.2 6E-10 1.3E-14 107.0 16.7 225 624-888 227-460 (478)
63 KOG3616 Selective LIM binding 99.2 1E-06 2.2E-11 93.9 41.9 343 194-606 456-811 (1636)
64 COG3071 HemY Uncharacterized e 99.2 1.9E-08 4.2E-13 100.3 27.4 257 621-884 119-388 (400)
65 PRK12370 invasion protein regu 99.2 5E-09 1.1E-13 118.8 26.9 245 635-887 276-536 (553)
66 KOG1840 Kinesin light chain [C 99.2 7.9E-09 1.7E-13 111.0 25.9 228 657-884 201-477 (508)
67 KOG4162 Predicted calmodulin-b 99.2 6.1E-07 1.3E-11 97.0 39.4 443 378-858 317-789 (799)
68 PRK11189 lipoprotein NlpI; Pro 99.2 1.8E-09 3.8E-14 111.8 20.2 211 670-888 41-267 (296)
69 KOG1173 Anaphase-promoting com 99.2 1.1E-07 2.5E-12 98.8 32.8 481 261-761 29-527 (611)
70 COG2956 Predicted N-acetylgluc 99.2 2.6E-09 5.6E-14 102.9 19.4 250 632-884 47-309 (389)
71 KOG2376 Signal recognition par 99.2 4.5E-07 9.7E-12 95.0 37.1 181 694-881 313-515 (652)
72 KOG2047 mRNA splicing factor [ 99.2 5.8E-06 1.3E-10 87.5 44.2 537 279-873 77-710 (835)
73 KOG1174 Anaphase-promoting com 99.2 6.7E-07 1.4E-11 89.3 35.6 262 618-889 230-503 (564)
74 KOG1156 N-terminal acetyltrans 99.1 1.2E-06 2.6E-11 92.8 38.9 446 427-884 19-509 (700)
75 COG3063 PilF Tfp pilus assembl 99.1 3.7E-09 8E-14 97.4 18.0 161 724-888 38-204 (250)
76 KOG1127 TPR repeat-containing 99.1 2.1E-06 4.5E-11 95.2 41.5 354 503-869 801-1192(1238)
77 PRK12370 invasion protein regu 99.1 1.3E-08 2.7E-13 115.5 23.8 209 670-885 276-501 (553)
78 KOG1174 Anaphase-promoting com 99.1 7.2E-07 1.6E-11 89.1 31.4 415 421-863 49-511 (564)
79 TIGR02521 type_IV_pilW type IV 99.1 4.6E-08 9.9E-13 98.6 24.4 198 619-853 30-233 (234)
80 KOG3785 Uncharacterized conser 99.1 1.3E-06 2.9E-11 85.4 32.2 144 390-544 63-213 (557)
81 KOG3785 Uncharacterized conser 99.1 6.2E-06 1.3E-10 80.8 36.7 180 391-579 29-213 (557)
82 KOG2376 Signal recognition par 99.0 3.3E-06 7.2E-11 88.6 36.1 438 289-782 18-517 (652)
83 KOG3617 WD40 and TPR repeat-co 99.0 3.2E-05 6.8E-10 84.1 44.1 245 619-885 1079-1358(1416)
84 KOG1156 N-terminal acetyltrans 99.0 3.5E-06 7.6E-11 89.4 35.5 424 461-898 18-485 (700)
85 PF12569 NARP1: NMDA receptor- 99.0 6.4E-07 1.4E-11 97.9 29.0 285 595-885 13-333 (517)
86 KOG3617 WD40 and TPR repeat-co 99.0 4.5E-05 9.7E-10 82.9 41.6 130 683-817 1212-1356(1416)
87 PRK11189 lipoprotein NlpI; Pro 98.9 5.2E-07 1.1E-11 93.5 26.4 231 635-872 41-286 (296)
88 KOG1840 Kinesin light chain [C 98.9 8.3E-07 1.8E-11 95.7 27.8 243 551-852 199-479 (508)
89 COG3063 PilF Tfp pilus assembl 98.9 4.5E-07 9.8E-12 83.9 21.5 190 694-885 39-235 (250)
90 PF04733 Coatomer_E: Coatomer 98.9 5.4E-08 1.2E-12 98.9 16.3 146 731-885 112-264 (290)
91 PF12569 NARP1: NMDA receptor- 98.9 8E-06 1.7E-10 89.4 33.1 282 493-816 12-330 (517)
92 KOG0548 Molecular co-chaperone 98.9 1.3E-06 2.8E-11 90.8 25.2 234 623-870 227-473 (539)
93 KOG1129 TPR repeat-containing 98.8 7.8E-08 1.7E-12 92.8 14.3 239 586-864 223-470 (478)
94 KOG1127 TPR repeat-containing 98.8 0.00021 4.5E-09 80.0 41.9 365 516-888 775-1177(1238)
95 KOG4340 Uncharacterized conser 98.8 5E-06 1.1E-10 79.5 25.8 380 489-885 14-442 (459)
96 KOG0624 dsRNA-activated protei 98.8 3E-05 6.6E-10 75.9 30.5 329 491-865 44-383 (504)
97 TIGR03302 OM_YfiO outer membra 98.8 5.9E-07 1.3E-11 90.4 19.5 179 689-886 32-232 (235)
98 cd05804 StaR_like StaR_like; a 98.7 2.6E-05 5.7E-10 84.2 32.9 257 627-887 50-337 (355)
99 KOG1125 TPR repeat-containing 98.7 3.7E-07 8E-12 95.6 16.1 211 671-887 301-528 (579)
100 PF04733 Coatomer_E: Coatomer 98.7 1.3E-06 2.8E-11 88.9 19.9 159 697-861 109-274 (290)
101 KOG0624 dsRNA-activated protei 98.7 2.4E-05 5.2E-10 76.5 26.5 189 697-889 162-373 (504)
102 PRK10370 formate-dependent nit 98.7 1.1E-06 2.5E-11 84.3 16.9 149 728-889 23-176 (198)
103 PRK15359 type III secretion sy 98.6 5.5E-07 1.2E-11 81.7 12.1 94 794-887 27-122 (144)
104 PLN02789 farnesyltranstransfer 98.6 1.7E-05 3.7E-10 81.9 24.4 211 670-884 52-300 (320)
105 PF12854 PPR_1: PPR repeat 98.6 4E-08 8.8E-13 62.9 3.2 33 177-209 2-34 (34)
106 KOG4340 Uncharacterized conser 98.6 1E-06 2.2E-11 84.1 13.6 199 693-894 13-215 (459)
107 KOG0548 Molecular co-chaperone 98.6 0.00012 2.5E-09 76.7 29.3 217 619-848 256-485 (539)
108 PRK04841 transcriptional regul 98.6 8.8E-05 1.9E-09 91.2 34.1 372 487-887 343-761 (903)
109 PLN02789 farnesyltranstransfer 98.5 5.4E-06 1.2E-10 85.6 19.0 192 696-890 43-254 (320)
110 PRK15359 type III secretion sy 98.5 2.1E-06 4.6E-11 77.9 13.3 123 742-869 14-138 (144)
111 cd05804 StaR_like StaR_like; a 98.5 0.00019 4.2E-09 77.5 30.7 265 620-887 6-294 (355)
112 PRK15179 Vi polysaccharide bio 98.5 1.5E-05 3.2E-10 90.9 21.5 130 754-885 84-216 (694)
113 COG5010 TadD Flp pilus assembl 98.4 3.3E-05 7.1E-10 73.6 18.4 153 725-880 70-225 (257)
114 TIGR02552 LcrH_SycD type III s 98.4 5E-06 1.1E-10 75.2 12.5 97 792-888 18-116 (135)
115 KOG1125 TPR repeat-containing 98.4 4.8E-05 1E-09 80.2 20.8 217 526-783 295-525 (579)
116 KOG3081 Vesicle coat complex C 98.4 0.0002 4.4E-09 68.2 22.9 156 697-858 115-277 (299)
117 PF12854 PPR_1: PPR repeat 98.4 4.6E-07 1E-11 58.0 3.8 32 751-782 2-33 (34)
118 COG5010 TadD Flp pilus assembl 98.4 2.5E-05 5.3E-10 74.4 16.8 136 752-888 62-199 (257)
119 PRK15363 pathogenicity island 98.3 1.3E-05 2.9E-10 71.0 13.4 96 792-887 36-133 (157)
120 COG4783 Putative Zn-dependent 98.3 0.00013 2.8E-09 75.8 22.5 109 768-878 318-429 (484)
121 KOG1128 Uncharacterized conser 98.3 2.2E-05 4.7E-10 84.9 17.2 211 659-887 402-617 (777)
122 KOG1070 rRNA processing protei 98.3 4.9E-05 1.1E-09 87.6 20.9 197 689-888 1457-1665(1710)
123 KOG3060 Uncharacterized conser 98.3 8.4E-05 1.8E-09 70.1 18.7 162 724-888 55-222 (289)
124 PRK04841 transcriptional regul 98.3 0.0024 5.1E-08 78.7 37.7 369 455-856 346-764 (903)
125 PRK10370 formate-dependent nit 98.3 4.4E-05 9.6E-10 73.4 17.6 154 697-861 23-182 (198)
126 TIGR03302 OM_YfiO outer membra 98.2 6.2E-05 1.3E-09 75.7 18.1 184 652-855 30-235 (235)
127 KOG1128 Uncharacterized conser 98.2 0.00017 3.7E-09 78.2 21.8 215 583-817 395-613 (777)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.7E-05 5.9E-10 81.9 14.9 121 759-883 172-294 (395)
129 KOG1914 mRNA cleavage and poly 98.2 0.015 3.2E-07 61.5 37.1 171 636-807 347-526 (656)
130 PRK14720 transcript cleavage f 98.2 0.00042 9.1E-09 79.9 24.5 148 692-869 118-269 (906)
131 TIGR00756 PPR pentatricopeptid 98.1 3.2E-06 6.9E-11 55.3 4.2 35 214-248 1-35 (35)
132 PRK15179 Vi polysaccharide bio 98.1 0.0004 8.6E-09 79.5 23.5 138 720-861 85-226 (694)
133 KOG3081 Vesicle coat complex C 98.1 0.0011 2.4E-08 63.4 22.0 176 641-824 94-276 (299)
134 KOG2053 Mitochondrial inherita 98.1 0.03 6.4E-07 63.0 40.5 159 723-884 438-606 (932)
135 TIGR00756 PPR pentatricopeptid 98.1 4E-06 8.7E-11 54.8 4.1 35 113-147 1-35 (35)
136 COG4783 Putative Zn-dependent 98.1 0.00037 7.9E-09 72.5 19.6 132 733-885 318-453 (484)
137 KOG1070 rRNA processing protei 98.1 0.00087 1.9E-08 77.9 23.9 224 655-879 1458-1693(1710)
138 TIGR02552 LcrH_SycD type III s 98.0 0.00013 2.7E-09 66.0 13.6 115 743-860 5-122 (135)
139 KOG3060 Uncharacterized conser 98.0 0.0012 2.5E-08 62.6 19.7 180 634-817 26-217 (289)
140 PF13414 TPR_11: TPR repeat; P 98.0 1.6E-05 3.5E-10 61.8 6.5 65 822-886 2-67 (69)
141 COG4235 Cytochrome c biogenesi 98.0 0.00012 2.6E-09 71.9 13.6 111 788-898 153-268 (287)
142 PF13432 TPR_16: Tetratricopep 98.0 1.7E-05 3.6E-10 60.8 6.3 60 829-888 3-62 (65)
143 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.3E-05 1.8E-09 65.4 11.3 96 793-888 4-107 (119)
144 PF12895 Apc3: Anaphase-promot 98.0 1.1E-05 2.4E-10 65.6 4.9 79 804-883 2-84 (84)
145 cd00189 TPR Tetratricopeptide 98.0 8.4E-05 1.8E-09 62.1 10.7 95 793-887 2-98 (100)
146 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 52.2 3.9 34 112-145 1-34 (34)
147 PF13812 PPR_3: Pentatricopept 97.9 1.1E-05 2.4E-10 52.2 3.8 34 213-246 1-34 (34)
148 KOG1914 mRNA cleavage and poly 97.9 0.045 9.6E-07 58.0 35.1 147 532-683 347-500 (656)
149 PF09976 TPR_21: Tetratricopep 97.9 0.0003 6.6E-09 64.1 14.2 113 769-883 24-144 (145)
150 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00024 5.1E-09 75.0 15.1 123 694-820 173-297 (395)
151 PRK14720 transcript cleavage f 97.9 0.0011 2.5E-08 76.5 21.5 224 617-892 28-258 (906)
152 KOG0550 Molecular chaperone (D 97.9 0.00042 9.1E-09 70.1 15.3 166 698-887 177-351 (486)
153 KOG0553 TPR repeat-containing 97.9 0.00021 4.6E-09 69.6 12.5 106 766-873 91-199 (304)
154 PF07079 DUF1347: Protein of u 97.9 0.05 1.1E-06 56.4 34.3 50 833-883 472-521 (549)
155 PLN03088 SGT1, suppressor of 97.8 8E-05 1.7E-09 79.1 10.3 107 763-870 9-117 (356)
156 PF09976 TPR_21: Tetratricopep 97.8 0.00074 1.6E-08 61.6 15.2 123 724-849 15-144 (145)
157 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5E-10 49.4 3.4 31 214-244 1-31 (31)
158 PF01535 PPR: PPR repeat; Int 97.7 3.6E-05 7.8E-10 48.5 3.3 31 113-143 1-31 (31)
159 PRK10153 DNA-binding transcrip 97.7 0.0008 1.7E-08 74.6 15.7 75 822-898 419-493 (517)
160 PRK02603 photosystem I assembl 97.7 0.00045 9.8E-09 65.2 11.4 96 793-888 37-151 (172)
161 PRK15331 chaperone protein Sic 97.7 0.0004 8.7E-09 62.1 10.0 100 786-885 31-133 (165)
162 COG4700 Uncharacterized protei 97.7 0.0031 6.7E-08 56.7 15.3 130 753-883 86-219 (251)
163 KOG0553 TPR repeat-containing 97.6 0.00021 4.7E-09 69.6 8.6 93 798-890 88-182 (304)
164 PF14559 TPR_19: Tetratricopep 97.6 7.4E-05 1.6E-09 57.8 4.6 56 834-889 2-57 (68)
165 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00078 1.7E-08 59.1 11.7 104 758-861 4-114 (119)
166 PF13371 TPR_9: Tetratricopept 97.6 0.0002 4.3E-09 56.3 6.8 60 830-889 2-61 (73)
167 PF13431 TPR_17: Tetratricopep 97.5 7.2E-05 1.6E-09 47.8 2.4 33 846-878 2-34 (34)
168 COG3898 Uncharacterized membra 97.5 0.14 3.1E-06 52.0 26.5 283 587-885 83-391 (531)
169 CHL00033 ycf3 photosystem I as 97.5 0.00079 1.7E-08 63.3 10.5 91 791-881 35-137 (168)
170 PRK02603 photosystem I assembl 97.5 0.003 6.5E-08 59.6 14.1 130 720-872 34-166 (172)
171 PF14938 SNAP: Soluble NSF att 97.4 0.0059 1.3E-07 62.9 16.7 117 766-883 124-263 (282)
172 PLN03088 SGT1, suppressor of 97.4 0.0022 4.8E-08 68.2 13.4 100 727-830 8-110 (356)
173 PRK10866 outer membrane biogen 97.4 0.017 3.6E-07 57.6 18.7 171 696-884 38-239 (243)
174 COG3898 Uncharacterized membra 97.4 0.21 4.4E-06 50.9 27.9 255 623-883 85-355 (531)
175 PRK10803 tol-pal system protei 97.4 0.0012 2.5E-08 66.2 10.4 95 794-888 146-248 (263)
176 PRK10153 DNA-binding transcrip 97.3 0.008 1.7E-07 66.8 16.9 139 718-858 334-488 (517)
177 PF14938 SNAP: Soluble NSF att 97.3 0.011 2.4E-07 60.8 16.9 95 792-886 115-225 (282)
178 PF13432 TPR_16: Tetratricopep 97.3 0.00077 1.7E-08 51.4 6.1 61 797-857 3-65 (65)
179 PF04840 Vps16_C: Vps16, C-ter 97.3 0.32 7E-06 50.4 28.8 107 590-715 181-287 (319)
180 cd00189 TPR Tetratricopeptide 97.2 0.003 6.5E-08 52.4 10.3 62 793-854 36-99 (100)
181 KOG2796 Uncharacterized conser 97.2 0.012 2.5E-07 56.2 14.2 133 723-855 179-318 (366)
182 PF05843 Suf: Suppressor of fo 97.2 0.01 2.2E-07 60.8 15.4 135 722-858 2-142 (280)
183 PF04840 Vps16_C: Vps16, C-ter 97.2 0.37 8E-06 50.0 31.6 109 692-816 179-287 (319)
184 PRK15363 pathogenicity island 97.2 0.036 7.8E-07 49.6 16.2 94 721-817 35-129 (157)
185 PF12895 Apc3: Anaphase-promot 97.1 0.00086 1.9E-08 54.4 5.4 80 734-816 2-83 (84)
186 COG4105 ComL DNA uptake lipopr 97.1 0.15 3.3E-06 49.5 21.1 67 828-898 172-241 (254)
187 PF10037 MRP-S27: Mitochondria 97.1 0.0053 1.1E-07 65.2 12.4 120 650-769 61-186 (429)
188 CHL00033 ycf3 photosystem I as 97.1 0.018 3.9E-07 54.0 15.0 80 721-802 35-117 (168)
189 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0022 4.7E-08 67.3 9.1 65 822-886 74-141 (453)
190 KOG1538 Uncharacterized conser 97.1 0.051 1.1E-06 58.5 19.0 210 473-749 623-845 (1081)
191 PF12688 TPR_5: Tetratrico pep 97.1 0.0065 1.4E-07 52.3 10.2 86 797-882 7-100 (120)
192 KOG2053 Mitochondrial inherita 97.0 0.92 2E-05 51.7 44.4 217 260-513 21-254 (932)
193 PF08579 RPM2: Mitochondrial r 97.0 0.0071 1.5E-07 49.9 9.3 83 558-666 32-115 (120)
194 PF07079 DUF1347: Protein of u 97.0 0.59 1.3E-05 48.9 34.5 117 700-818 389-522 (549)
195 KOG1130 Predicted G-alpha GTPa 97.0 0.0055 1.2E-07 62.0 10.5 255 630-885 27-343 (639)
196 KOG2280 Vacuolar assembly/sort 97.0 0.87 1.9E-05 50.7 31.0 328 520-881 441-794 (829)
197 PF14559 TPR_19: Tetratricopep 97.0 0.0011 2.4E-08 51.2 4.6 54 768-822 3-57 (68)
198 KOG2041 WD40 repeat protein [G 97.0 0.83 1.8E-05 50.2 29.9 134 390-542 766-904 (1189)
199 COG4700 Uncharacterized protei 96.9 0.04 8.7E-07 49.8 13.9 103 786-888 84-191 (251)
200 PF08579 RPM2: Mitochondrial r 96.9 0.016 3.4E-07 47.9 10.4 80 724-803 28-116 (120)
201 PF09205 DUF1955: Domain of un 96.9 0.096 2.1E-06 44.5 15.0 138 731-889 12-152 (161)
202 KOG0550 Molecular chaperone (D 96.9 0.39 8.5E-06 49.5 22.0 86 699-786 258-351 (486)
203 KOG2041 WD40 repeat protein [G 96.8 1.2 2.5E-05 49.2 27.5 126 498-644 747-876 (1189)
204 KOG1538 Uncharacterized conser 96.8 0.2 4.4E-06 54.2 20.3 191 391-648 639-845 (1081)
205 PF13281 DUF4071: Domain of un 96.8 0.16 3.5E-06 53.0 19.3 160 694-855 145-337 (374)
206 PF10037 MRP-S27: Mitochondria 96.8 0.031 6.8E-07 59.5 14.5 123 612-734 58-186 (429)
207 COG0457 NrfG FOG: TPR repeat [ 96.8 0.69 1.5E-05 45.9 27.2 194 690-886 59-265 (291)
208 PF13414 TPR_11: TPR repeat; P 96.7 0.0029 6.3E-08 48.9 5.2 64 791-854 3-69 (69)
209 PF13424 TPR_12: Tetratricopep 96.7 0.0029 6.2E-08 50.4 5.1 61 825-885 7-74 (78)
210 PF13428 TPR_14: Tetratricopep 96.7 0.0028 6.1E-08 43.6 4.2 42 824-865 2-43 (44)
211 PF13525 YfiO: Outer membrane 96.7 0.13 2.9E-06 49.8 17.4 174 697-878 12-199 (203)
212 PF05843 Suf: Suppressor of fo 96.7 0.052 1.1E-06 55.6 15.2 140 621-764 2-148 (280)
213 PF13512 TPR_18: Tetratricopep 96.6 0.037 8.1E-07 48.6 11.6 94 795-888 14-130 (142)
214 PF06239 ECSIT: Evolutionarily 96.6 0.02 4.3E-07 53.7 10.4 96 711-806 35-153 (228)
215 PRK10803 tol-pal system protei 96.6 0.026 5.6E-07 56.7 12.0 90 767-858 154-252 (263)
216 KOG0543 FKBP-type peptidyl-pro 96.5 0.0099 2.2E-07 61.0 8.3 124 762-885 214-354 (397)
217 KOG2796 Uncharacterized conser 96.5 0.14 3E-06 49.2 14.9 140 621-762 178-325 (366)
218 PF03704 BTAD: Bacterial trans 96.4 0.069 1.5E-06 48.7 13.0 60 825-884 64-123 (146)
219 KOG1130 Predicted G-alpha GTPa 96.4 0.0065 1.4E-07 61.6 6.3 219 665-883 27-301 (639)
220 PF13371 TPR_9: Tetratricopept 96.3 0.014 3E-07 45.7 6.7 65 799-863 3-69 (73)
221 PF12688 TPR_5: Tetratrico pep 96.3 0.12 2.5E-06 44.6 12.7 92 626-717 7-102 (120)
222 PF06239 ECSIT: Evolutionarily 96.3 0.037 8E-07 52.0 10.0 97 404-500 34-153 (228)
223 KOG0543 FKBP-type peptidyl-pro 96.3 0.054 1.2E-06 55.8 12.0 128 727-855 214-358 (397)
224 KOG4555 TPR repeat-containing 96.2 0.037 8E-07 46.8 8.7 90 798-887 50-145 (175)
225 KOG1585 Protein required for f 96.2 0.45 9.7E-06 45.4 16.6 88 792-880 151-250 (308)
226 PRK11906 transcriptional regul 96.1 0.089 1.9E-06 55.7 13.0 147 736-883 273-433 (458)
227 KOG4234 TPR repeat-containing 96.0 0.042 9.2E-07 50.3 8.8 58 831-888 142-199 (271)
228 COG4235 Cytochrome c biogenesi 96.0 0.17 3.7E-06 50.3 13.8 105 753-858 152-262 (287)
229 PRK11906 transcriptional regul 95.9 0.29 6.3E-06 52.0 15.5 143 705-852 273-436 (458)
230 PF03704 BTAD: Bacterial trans 95.9 0.062 1.3E-06 49.0 9.7 70 723-794 64-139 (146)
231 PRK10866 outer membrane biogen 95.9 1.2 2.7E-05 44.3 19.4 192 522-748 38-239 (243)
232 PF13525 YfiO: Outer membrane 95.8 0.19 4.1E-06 48.8 13.2 148 723-897 7-177 (203)
233 PF13281 DUF4071: Domain of un 95.8 0.84 1.8E-05 47.8 18.1 164 723-886 143-334 (374)
234 COG3118 Thioredoxin domain-con 95.6 0.55 1.2E-05 46.6 15.3 119 766-886 144-265 (304)
235 PF02259 FAT: FAT domain; Int 95.6 3.7 8.1E-05 43.9 23.7 150 719-870 144-305 (352)
236 KOG1941 Acetylcholine receptor 95.5 1.4 3E-05 44.7 17.4 119 663-781 130-271 (518)
237 COG0457 NrfG FOG: TPR repeat [ 95.4 3.1 6.7E-05 41.1 26.2 217 655-879 59-286 (291)
238 COG3118 Thioredoxin domain-con 95.3 1.1 2.5E-05 44.4 16.3 175 707-883 120-299 (304)
239 KOG2280 Vacuolar assembly/sort 95.3 6.4 0.00014 44.3 33.8 113 689-816 683-795 (829)
240 KOG4555 TPR repeat-containing 95.0 0.12 2.6E-06 43.8 7.4 56 830-885 50-105 (175)
241 PF13424 TPR_12: Tetratricopep 95.0 0.034 7.5E-07 44.1 4.3 26 758-783 7-32 (78)
242 KOG1941 Acetylcholine receptor 95.0 0.33 7.3E-06 48.9 11.6 48 630-677 16-65 (518)
243 COG1729 Uncharacterized protei 94.9 0.21 4.5E-06 49.0 10.0 59 828-886 183-244 (262)
244 COG1729 Uncharacterized protei 94.9 0.29 6.4E-06 48.0 10.9 94 768-861 153-253 (262)
245 COG4785 NlpI Lipoprotein NlpI, 94.6 2.3 4.9E-05 40.0 15.1 157 721-887 99-267 (297)
246 PRK11619 lytic murein transgly 94.6 11 0.00025 43.5 32.7 113 735-849 255-372 (644)
247 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 1.3 2.8E-05 47.2 15.3 60 690-749 75-140 (453)
248 KOG1258 mRNA processing protei 94.4 9.8 0.00021 41.9 32.8 180 689-871 296-489 (577)
249 KOG2610 Uncharacterized conser 94.4 0.36 7.8E-06 48.2 10.1 160 732-893 114-283 (491)
250 KOG1258 mRNA processing protei 94.2 11 0.00023 41.7 26.3 120 757-877 298-420 (577)
251 COG5107 RNA14 Pre-mRNA 3'-end 94.2 8.7 0.00019 40.5 34.4 134 720-856 396-535 (660)
252 PF07719 TPR_2: Tetratricopept 94.1 0.083 1.8E-06 33.6 3.7 29 858-886 2-30 (34)
253 PF13176 TPR_7: Tetratricopept 94.1 0.1 2.2E-06 33.8 4.0 26 859-884 1-26 (36)
254 smart00299 CLH Clathrin heavy 93.9 4.4 9.5E-05 36.4 16.0 124 726-868 12-136 (140)
255 PF00515 TPR_1: Tetratricopept 93.9 0.094 2E-06 33.4 3.6 30 858-887 2-31 (34)
256 PF13428 TPR_14: Tetratricopep 93.9 0.12 2.5E-06 35.5 4.3 33 857-889 1-33 (44)
257 PF04184 ST7: ST7 protein; In 93.9 1.1 2.4E-05 47.7 13.2 54 829-882 265-320 (539)
258 PRK15331 chaperone protein Sic 93.8 1.5 3.3E-05 39.7 12.2 84 731-817 47-131 (165)
259 PF10300 DUF3808: Protein of u 93.7 3.2 6.9E-05 46.1 17.4 159 658-817 191-373 (468)
260 PF10300 DUF3808: Protein of u 93.7 3.3 7.1E-05 46.0 17.5 160 724-885 191-375 (468)
261 PF13512 TPR_18: Tetratricopep 93.6 3.7 8.1E-05 36.3 14.0 118 727-859 16-135 (142)
262 PF04053 Coatomer_WDAD: Coatom 93.6 1.4 2.9E-05 48.2 14.0 106 697-819 325-430 (443)
263 PF12921 ATP13: Mitochondrial 93.5 0.86 1.9E-05 39.8 10.0 48 752-799 48-96 (126)
264 KOG3941 Intermediate in Toll s 93.5 0.56 1.2E-05 45.7 9.4 97 710-806 54-173 (406)
265 PF07719 TPR_2: Tetratricopept 93.5 0.19 4.2E-06 31.8 4.6 33 824-856 2-34 (34)
266 COG4649 Uncharacterized protei 93.3 2.5 5.5E-05 38.2 12.4 131 720-851 58-195 (221)
267 KOG2610 Uncharacterized conser 93.2 1.7 3.8E-05 43.5 12.4 159 700-860 113-286 (491)
268 KOG2114 Vacuolar assembly/sort 93.2 20 0.00043 41.2 26.6 117 186-310 338-458 (933)
269 PF00515 TPR_1: Tetratricopept 93.0 0.19 4.1E-06 31.9 4.0 33 824-856 2-34 (34)
270 PF04184 ST7: ST7 protein; In 92.9 9.9 0.00021 41.0 18.2 142 626-782 174-321 (539)
271 smart00299 CLH Clathrin heavy 92.9 3.6 7.8E-05 37.0 13.7 26 805-833 110-135 (140)
272 COG4649 Uncharacterized protei 92.8 7.5 0.00016 35.3 15.6 118 767-884 69-194 (221)
273 PF12921 ATP13: Mitochondrial 92.6 1.3 2.7E-05 38.8 9.7 30 687-716 49-78 (126)
274 PF09613 HrpB1_HrpK: Bacterial 92.2 0.96 2.1E-05 40.8 8.6 70 803-872 22-93 (160)
275 PF04097 Nic96: Nup93/Nic96; 92.0 28 0.00062 40.2 23.1 46 417-463 113-158 (613)
276 PF09613 HrpB1_HrpK: Bacterial 92.0 5.9 0.00013 35.9 13.2 65 768-834 22-88 (160)
277 KOG2114 Vacuolar assembly/sort 92.0 28 0.00061 40.1 28.8 49 695-743 710-758 (933)
278 PF13174 TPR_6: Tetratricopept 91.9 0.21 4.6E-06 31.4 3.2 30 859-888 2-31 (33)
279 KOG0890 Protein kinase of the 91.8 52 0.0011 42.9 29.3 312 557-887 1389-1732(2382)
280 KOG3941 Intermediate in Toll s 91.8 1.7 3.7E-05 42.5 10.1 107 610-716 55-185 (406)
281 KOG4234 TPR repeat-containing 91.7 2.6 5.7E-05 39.1 10.7 120 766-886 105-233 (271)
282 TIGR02561 HrpB1_HrpK type III 91.4 1.1 2.4E-05 39.5 7.8 53 835-887 22-74 (153)
283 PF00637 Clathrin: Region in C 91.4 0.099 2.1E-06 47.5 1.6 86 152-240 12-97 (143)
284 PF13170 DUF4003: Protein of u 91.3 20 0.00043 37.0 18.8 64 738-801 160-227 (297)
285 COG3629 DnrI DNA-binding trans 91.1 1.8 3.8E-05 43.5 10.0 76 723-800 155-236 (280)
286 KOG4648 Uncharacterized conser 91.1 0.49 1.1E-05 47.3 6.0 107 763-875 104-213 (536)
287 COG2976 Uncharacterized protei 91.0 4.1 8.9E-05 37.9 11.3 87 765-853 98-189 (207)
288 COG2976 Uncharacterized protei 91.0 9.2 0.0002 35.7 13.5 90 797-887 95-189 (207)
289 COG1747 Uncharacterized N-term 90.7 28 0.0006 37.7 23.7 177 688-869 64-251 (711)
290 PF13181 TPR_8: Tetratricopept 90.7 0.54 1.2E-05 29.8 4.1 30 858-887 2-31 (34)
291 KOG2066 Vacuolar assembly/sort 90.3 39 0.00084 38.7 26.0 75 486-563 393-467 (846)
292 PF04053 Coatomer_WDAD: Coatom 90.0 7.7 0.00017 42.5 14.6 130 554-715 298-427 (443)
293 PF07721 TPR_4: Tetratricopept 90.0 0.46 1E-05 28.0 3.0 25 857-881 1-25 (26)
294 PRK09687 putative lyase; Provi 89.9 25 0.00054 36.0 25.4 75 482-561 203-277 (280)
295 PF02259 FAT: FAT domain; Int 89.9 15 0.00033 39.2 17.3 67 821-887 144-214 (352)
296 KOG1586 Protein required for f 89.9 19 0.00042 34.6 17.0 24 834-857 165-188 (288)
297 PF09205 DUF1955: Domain of un 89.8 13 0.00027 32.3 14.7 64 724-788 89-152 (161)
298 PF06552 TOM20_plant: Plant sp 89.7 0.7 1.5E-05 42.3 5.3 47 839-885 51-108 (186)
299 COG3947 Response regulator con 89.5 23 0.00051 35.3 15.6 59 827-885 283-341 (361)
300 PF08631 SPO22: Meiosis protei 89.4 28 0.0006 35.7 25.6 20 831-850 254-273 (278)
301 PF13374 TPR_10: Tetratricopep 89.3 0.69 1.5E-05 30.9 4.1 29 858-886 3-31 (42)
302 COG3629 DnrI DNA-binding trans 89.3 1.9 4.1E-05 43.3 8.4 60 826-885 156-215 (280)
303 PF13170 DUF4003: Protein of u 88.9 13 0.00028 38.3 14.5 127 636-764 78-225 (297)
304 PF07035 Mic1: Colon cancer-as 88.8 16 0.00034 33.7 13.4 133 435-579 14-148 (167)
305 PF07035 Mic1: Colon cancer-as 88.5 20 0.00044 33.0 14.9 55 694-748 93-147 (167)
306 KOG4570 Uncharacterized conser 88.5 4.6 0.0001 40.3 10.2 98 684-785 58-164 (418)
307 COG0790 FOG: TPR repeat, SEL1 88.2 33 0.00071 35.5 17.6 115 771-888 128-268 (292)
308 PF13181 TPR_8: Tetratricopept 88.1 0.92 2E-05 28.7 3.8 31 825-855 3-33 (34)
309 PF04097 Nic96: Nup93/Nic96; 87.3 64 0.0014 37.4 22.6 211 489-717 115-354 (613)
310 COG5107 RNA14 Pre-mRNA 3'-end 86.9 46 0.001 35.4 34.5 443 280-766 39-545 (660)
311 KOG1585 Protein required for f 86.8 32 0.0007 33.4 14.4 111 762-884 97-217 (308)
312 KOG4642 Chaperone-dependent E3 86.7 2.1 4.5E-05 41.0 6.5 80 805-884 24-105 (284)
313 KOG4648 Uncharacterized conser 86.5 2.9 6.3E-05 42.1 7.7 94 728-824 104-199 (536)
314 PRK15180 Vi polysaccharide bio 86.4 6.1 0.00013 41.8 10.2 147 728-877 296-448 (831)
315 PF09986 DUF2225: Uncharacteri 86.2 3.9 8.5E-05 39.7 8.5 63 826-888 121-196 (214)
316 TIGR02561 HrpB1_HrpK type III 86.1 16 0.00034 32.6 11.1 19 799-817 52-70 (153)
317 PF13176 TPR_7: Tetratricopept 86.1 1.2 2.6E-05 28.7 3.4 27 826-852 2-28 (36)
318 PRK11619 lytic murein transgly 85.6 79 0.0017 36.8 41.5 94 797-890 413-509 (644)
319 COG4455 ImpE Protein of avirul 85.4 6 0.00013 37.5 8.6 128 724-859 4-141 (273)
320 KOG1920 IkappaB kinase complex 85.3 98 0.0021 37.6 25.3 21 797-817 1005-1025(1265)
321 PF11207 DUF2989: Protein of u 84.2 5.6 0.00012 37.5 8.1 75 802-877 118-198 (203)
322 KOG0545 Aryl-hydrocarbon recep 84.1 4.2 9.2E-05 39.1 7.2 63 826-888 233-295 (329)
323 COG4455 ImpE Protein of avirul 83.9 3.5 7.5E-05 38.9 6.5 65 794-858 4-70 (273)
324 PF14561 TPR_20: Tetratricopep 83.8 3.5 7.6E-05 33.5 5.9 43 844-886 9-51 (90)
325 PF14853 Fis1_TPR_C: Fis1 C-te 83.7 7.5 0.00016 27.8 6.7 37 827-863 5-41 (53)
326 KOG1550 Extracellular protein 83.6 44 0.00095 38.2 16.8 149 733-889 261-429 (552)
327 COG4105 ComL DNA uptake lipopr 83.1 50 0.0011 32.6 21.8 75 523-597 41-117 (254)
328 PF10602 RPN7: 26S proteasome 83.0 12 0.00025 35.2 10.0 92 724-817 39-139 (177)
329 PF13174 TPR_6: Tetratricopept 83.0 2.4 5.2E-05 26.3 3.9 31 826-856 3-33 (33)
330 PHA02875 ankyrin repeat protei 82.7 69 0.0015 35.1 17.8 199 134-349 17-230 (413)
331 COG4785 NlpI Lipoprotein NlpI, 82.6 5.6 0.00012 37.5 7.3 88 768-857 77-167 (297)
332 PF13431 TPR_17: Tetratricopep 82.5 1.4 3.1E-05 27.9 2.6 19 792-810 14-32 (34)
333 smart00028 TPR Tetratricopepti 82.2 2.5 5.4E-05 25.5 3.8 28 858-885 2-29 (34)
334 TIGR03504 FimV_Cterm FimV C-te 82.0 2.7 6E-05 28.5 3.8 27 861-887 3-29 (44)
335 KOG4279 Serine/threonine prote 81.7 34 0.00073 38.8 13.8 193 610-855 188-398 (1226)
336 KOG1920 IkappaB kinase complex 81.7 1.3E+02 0.0029 36.5 24.6 49 761-817 1004-1052(1265)
337 KOG2066 Vacuolar assembly/sort 81.6 1.1E+02 0.0023 35.4 23.1 29 694-722 509-537 (846)
338 KOG1308 Hsp70-interacting prot 80.7 1.2 2.6E-05 45.0 2.6 88 803-890 126-215 (377)
339 PRK09687 putative lyase; Provi 80.4 72 0.0016 32.6 26.7 77 691-771 143-221 (280)
340 PRK10941 hypothetical protein; 80.4 8.9 0.00019 38.7 8.6 62 826-887 184-245 (269)
341 KOG1550 Extracellular protein 80.1 1.2E+02 0.0025 34.8 22.0 179 705-888 343-540 (552)
342 COG5159 RPN6 26S proteasome re 80.0 14 0.0003 36.5 9.2 54 727-780 9-69 (421)
343 KOG1464 COP9 signalosome, subu 79.7 66 0.0014 31.7 17.9 127 622-748 67-218 (440)
344 PRK12798 chemotaxis protein; R 79.5 92 0.002 33.3 22.2 179 703-884 125-322 (421)
345 PF00637 Clathrin: Region in C 78.7 2.6 5.6E-05 38.1 4.0 85 355-442 13-97 (143)
346 COG2909 MalT ATP-dependent tra 78.1 1.5E+02 0.0033 34.9 28.4 192 700-894 425-655 (894)
347 PF10602 RPN7: 26S proteasome 77.8 29 0.00062 32.6 10.7 61 757-817 37-99 (177)
348 KOG4507 Uncharacterized conser 77.2 13 0.00028 40.6 8.9 81 804-884 620-703 (886)
349 KOG0551 Hsp90 co-chaperone CNS 77.1 11 0.00023 38.3 7.7 94 792-885 82-181 (390)
350 PHA02875 ankyrin repeat protei 77.0 91 0.002 34.2 16.4 54 393-450 174-230 (413)
351 PF04910 Tcf25: Transcriptiona 76.4 82 0.0018 33.6 14.8 121 753-885 36-167 (360)
352 KOG3364 Membrane protein invol 76.2 15 0.00032 32.0 7.3 75 788-862 29-110 (149)
353 TIGR02508 type_III_yscG type I 74.4 19 0.00041 29.4 7.0 63 288-353 44-106 (115)
354 COG1747 Uncharacterized N-term 74.4 1.4E+02 0.003 32.7 23.9 161 619-786 65-235 (711)
355 cd00923 Cyt_c_Oxidase_Va Cytoc 74.2 19 0.00041 29.3 6.9 49 815-863 34-82 (103)
356 PF02284 COX5A: Cytochrome c o 73.4 21 0.00045 29.4 7.1 48 816-863 38-85 (108)
357 PF11207 DUF2989: Protein of u 73.3 21 0.00045 33.8 8.2 73 738-811 123-198 (203)
358 PRK15180 Vi polysaccharide bio 72.3 25 0.00054 37.5 9.3 135 700-838 299-442 (831)
359 smart00028 TPR Tetratricopepti 72.3 7 0.00015 23.3 3.8 31 825-855 3-33 (34)
360 PF08631 SPO22: Meiosis protei 72.2 1.2E+02 0.0026 31.0 26.0 20 729-748 254-273 (278)
361 KOG4570 Uncharacterized conser 72.2 30 0.00065 34.9 9.3 102 277-379 58-165 (418)
362 cd00923 Cyt_c_Oxidase_Va Cytoc 71.7 14 0.0003 30.0 5.7 61 128-190 23-84 (103)
363 TIGR02508 type_III_yscG type I 71.4 44 0.00096 27.4 8.4 63 390-455 45-107 (115)
364 PF13374 TPR_10: Tetratricopep 70.7 11 0.00024 24.8 4.6 27 723-749 4-30 (42)
365 KOG2063 Vacuolar assembly/sort 69.3 96 0.0021 37.0 14.2 26 623-648 507-532 (877)
366 KOG0376 Serine-threonine phosp 69.2 4.2 9.1E-05 43.4 3.1 98 763-862 11-111 (476)
367 COG4976 Predicted methyltransf 68.8 7.6 0.00017 37.1 4.3 53 835-887 7-59 (287)
368 PF10579 Rapsyn_N: Rapsyn N-te 68.8 11 0.00024 29.3 4.5 45 835-879 18-65 (80)
369 PF14853 Fis1_TPR_C: Fis1 C-te 68.4 9.9 0.00021 27.2 3.9 31 859-889 3-33 (53)
370 KOG2063 Vacuolar assembly/sort 68.2 2.4E+02 0.0053 33.8 17.0 27 518-544 506-532 (877)
371 KOG3364 Membrane protein invol 68.2 82 0.0018 27.7 9.9 68 820-887 29-101 (149)
372 PF09670 Cas_Cas02710: CRISPR- 67.7 70 0.0015 34.4 12.1 50 733-783 143-196 (379)
373 KOG0276 Vesicle coat complex C 67.4 76 0.0016 35.3 11.8 109 698-823 645-753 (794)
374 KOG4507 Uncharacterized conser 66.5 21 0.00046 39.1 7.5 75 794-868 645-721 (886)
375 COG3947 Response regulator con 65.0 37 0.00081 33.9 8.3 69 724-794 282-356 (361)
376 KOG2471 TPR repeat-containing 64.3 1.6E+02 0.0034 32.0 13.1 63 829-894 212-274 (696)
377 KOG2471 TPR repeat-containing 64.0 1.8E+02 0.004 31.6 13.5 106 765-870 249-382 (696)
378 PF12862 Apc5: Anaphase-promot 61.0 26 0.00056 28.7 5.8 52 834-885 9-69 (94)
379 PF07720 TPR_3: Tetratricopept 60.9 14 0.0003 23.9 3.2 24 858-881 2-25 (36)
380 PF10579 Rapsyn_N: Rapsyn N-te 60.8 18 0.00039 28.2 4.3 45 768-812 18-64 (80)
381 KOG4642 Chaperone-dependent E3 60.3 96 0.0021 30.3 9.8 99 700-800 20-126 (284)
382 PF10345 Cohesin_load: Cohesin 60.2 3.3E+02 0.0072 31.7 38.4 49 836-884 547-604 (608)
383 cd08819 CARD_MDA5_2 Caspase ac 59.3 59 0.0013 26.0 6.9 65 675-741 22-86 (88)
384 PHA03100 ankyrin repeat protei 58.7 2.5E+02 0.0053 31.5 15.3 41 168-208 87-131 (480)
385 KOG0276 Vesicle coat complex C 58.1 63 0.0014 35.9 9.2 57 212-277 665-721 (794)
386 PF13762 MNE1: Mitochondrial s 57.6 1.4E+02 0.0031 26.7 10.2 76 489-564 43-128 (145)
387 KOG0890 Protein kinase of the 57.4 6.2E+02 0.014 34.0 33.6 75 494-573 1429-1505(2382)
388 KOG1498 26S proteasome regulat 57.0 2.6E+02 0.0057 29.6 16.4 183 689-898 51-253 (439)
389 PF02284 COX5A: Cytochrome c o 56.1 56 0.0012 27.0 6.5 46 639-684 29-74 (108)
390 PF07720 TPR_3: Tetratricopept 55.4 39 0.00084 21.8 4.6 32 825-856 3-36 (36)
391 PF13762 MNE1: Mitochondrial s 54.7 1.6E+02 0.0035 26.4 10.4 50 414-463 78-128 (145)
392 PF07163 Pex26: Pex26 protein; 53.3 1.5E+02 0.0032 29.9 10.1 84 696-779 89-181 (309)
393 PF13929 mRNA_stabil: mRNA sta 53.2 2.6E+02 0.0057 28.4 12.5 60 379-438 197-261 (292)
394 PRK10941 hypothetical protein; 52.9 94 0.002 31.5 9.2 68 795-862 185-254 (269)
395 PF08311 Mad3_BUB1_I: Mad3/BUB 52.7 87 0.0019 27.4 8.0 61 819-882 62-124 (126)
396 smart00386 HAT HAT (Half-A-TPR 52.7 25 0.00054 21.3 3.5 29 837-865 1-29 (33)
397 PF04190 DUF410: Protein of un 52.5 2.6E+02 0.0057 28.2 15.8 104 396-511 2-116 (260)
398 PF06552 TOM20_plant: Plant sp 52.4 51 0.0011 30.6 6.5 43 839-888 96-138 (186)
399 PRK12798 chemotaxis protein; R 52.0 3.3E+02 0.0073 29.3 18.1 192 694-886 85-286 (421)
400 KOG3824 Huntingtin interacting 51.8 25 0.00054 35.2 4.8 64 801-864 126-191 (472)
401 cd08819 CARD_MDA5_2 Caspase ac 49.0 1.2E+02 0.0027 24.3 7.2 39 497-536 48-86 (88)
402 KOG0403 Neoplastic transformat 48.8 3.8E+02 0.0082 28.9 17.9 290 217-547 218-574 (645)
403 KOG0991 Replication factor C, 48.6 61 0.0013 31.4 6.5 110 30-145 141-271 (333)
404 KOG4077 Cytochrome c oxidase, 47.7 1.5E+02 0.0032 25.7 7.9 48 816-863 77-124 (149)
405 PF13934 ELYS: Nuclear pore co 47.7 2.5E+02 0.0053 27.7 11.1 106 723-837 78-186 (226)
406 COG2912 Uncharacterized conser 47.1 69 0.0015 32.0 7.0 59 827-885 185-243 (269)
407 TIGR03504 FimV_Cterm FimV C-te 47.0 42 0.00092 22.9 3.9 25 626-650 5-29 (44)
408 PF13934 ELYS: Nuclear pore co 46.5 3E+02 0.0065 27.1 12.5 120 693-821 79-202 (226)
409 KOG2581 26S proteasome regulat 46.5 2.6E+02 0.0056 29.8 11.0 122 734-855 139-279 (493)
410 PF09477 Type_III_YscG: Bacter 45.9 1E+02 0.0023 25.8 6.6 79 162-243 21-99 (116)
411 KOG2396 HAT (Half-A-TPR) repea 45.8 4.5E+02 0.0098 29.0 33.7 88 762-851 466-558 (568)
412 PF14689 SPOB_a: Sensor_kinase 45.7 44 0.00096 24.8 4.3 29 755-783 22-50 (62)
413 PF14863 Alkyl_sulf_dimr: Alky 45.4 91 0.002 27.9 6.9 66 807-875 57-122 (141)
414 PF10345 Cohesin_load: Cohesin 45.4 5.5E+02 0.012 29.9 32.2 84 800-883 370-479 (608)
415 TIGR02710 CRISPR-associated pr 45.3 3.4E+02 0.0075 29.0 12.2 55 727-781 136-196 (380)
416 KOG2422 Uncharacterized conser 45.3 4.9E+02 0.011 29.3 15.9 214 665-884 248-514 (665)
417 PF11663 Toxin_YhaV: Toxin wit 45.2 28 0.0006 30.4 3.5 41 112-157 95-138 (140)
418 PF00244 14-3-3: 14-3-3 protei 45.1 3.1E+02 0.0066 27.2 11.4 161 727-887 7-199 (236)
419 PF09477 Type_III_YscG: Bacter 44.9 1.8E+02 0.0039 24.5 7.7 54 390-445 46-99 (116)
420 COG4976 Predicted methyltransf 44.6 33 0.00072 33.0 4.2 55 802-856 6-62 (287)
421 smart00777 Mad3_BUB1_I Mad3/BU 44.3 1.7E+02 0.0036 25.6 8.2 62 818-882 61-124 (125)
422 COG5187 RPN7 26S proteasome re 44.2 94 0.002 31.1 7.3 93 791-883 115-218 (412)
423 KOG0530 Protein farnesyltransf 44.0 3.5E+02 0.0075 27.1 12.3 48 843-890 133-180 (318)
424 KOG0687 26S proteasome regulat 43.0 2.6E+02 0.0057 28.8 10.2 90 792-883 105-207 (393)
425 PF04910 Tcf25: Transcriptiona 42.9 4.5E+02 0.0097 28.1 19.5 54 728-783 110-166 (360)
426 KOG0376 Serine-threonine phosp 42.8 26 0.00056 37.7 3.6 93 796-888 9-103 (476)
427 KOG2908 26S proteasome regulat 42.7 2.6E+02 0.0057 29.0 10.2 90 723-812 77-178 (380)
428 PF10255 Paf67: RNA polymerase 42.5 1.2E+02 0.0025 32.8 8.4 56 829-884 128-191 (404)
429 PF12968 DUF3856: Domain of Un 41.2 2.3E+02 0.0051 24.4 11.7 67 793-884 57-127 (144)
430 PRK10564 maltose regulon perip 41.0 42 0.00092 34.0 4.6 41 316-356 259-299 (303)
431 PF10366 Vps39_1: Vacuolar sor 40.9 1.7E+02 0.0036 24.8 7.6 28 214-241 40-67 (108)
432 COG4259 Uncharacterized protei 40.7 1.3E+02 0.0029 24.6 6.3 53 775-827 56-109 (121)
433 PF09986 DUF2225: Uncharacteri 39.7 3.6E+02 0.0077 26.3 10.7 63 792-854 119-196 (214)
434 PRK13800 putative oxidoreducta 39.0 8.3E+02 0.018 30.1 24.1 255 303-579 624-880 (897)
435 PF10366 Vps39_1: Vacuolar sor 38.3 1.5E+02 0.0032 25.2 6.8 28 416-443 40-67 (108)
436 PF08195 TRI9: TRI9 protein; 37.9 12 0.00026 23.5 0.2 13 887-899 10-22 (43)
437 PF11848 DUF3368: Domain of un 37.7 1.2E+02 0.0027 21.0 5.3 34 425-458 12-45 (48)
438 KOG1464 COP9 signalosome, subu 37.5 4.3E+02 0.0093 26.4 20.0 40 566-605 42-84 (440)
439 PHA02537 M terminase endonucle 37.5 4.1E+02 0.0089 26.1 11.2 105 732-855 94-210 (230)
440 COG2909 MalT ATP-dependent tra 36.7 8.1E+02 0.018 29.3 26.6 213 667-882 427-684 (894)
441 PF07163 Pex26: Pex26 protein; 36.7 3E+02 0.0066 27.8 9.4 84 763-846 90-181 (309)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 36.2 2.3E+02 0.0049 24.8 8.0 42 774-815 81-123 (126)
443 PF07575 Nucleopor_Nup85: Nup8 36.1 7.3E+02 0.016 28.6 17.0 26 384-410 149-174 (566)
444 PF07575 Nucleopor_Nup85: Nup8 36.1 2.8E+02 0.0062 31.9 11.1 75 502-578 391-465 (566)
445 COG4259 Uncharacterized protei 36.0 1.2E+02 0.0025 25.0 5.3 38 845-882 59-97 (121)
446 PF11846 DUF3366: Domain of un 35.7 1.4E+02 0.003 28.5 7.3 32 718-749 141-172 (193)
447 COG4941 Predicted RNA polymera 35.5 5.2E+02 0.011 26.9 11.0 122 737-862 272-404 (415)
448 PF09670 Cas_Cas02710: CRISPR- 35.2 2.3E+02 0.0051 30.5 9.6 52 765-817 140-195 (379)
449 PF11848 DUF3368: Domain of un 35.2 1.4E+02 0.0031 20.7 5.2 33 526-558 12-44 (48)
450 PF10516 SHNi-TPR: SHNi-TPR; 34.2 94 0.002 20.4 3.9 28 858-885 2-29 (38)
451 KOG1586 Protein required for f 33.5 4.8E+02 0.01 25.7 19.2 21 768-788 166-186 (288)
452 PF14669 Asp_Glu_race_2: Putat 33.2 4.3E+02 0.0092 25.0 11.8 56 762-817 138-207 (233)
453 PF11846 DUF3366: Domain of un 33.2 1.3E+02 0.0029 28.6 6.7 37 818-854 139-175 (193)
454 KOG1308 Hsp70-interacting prot 33.2 14 0.00029 37.8 -0.1 64 833-896 124-187 (377)
455 COG5108 RPO41 Mitochondrial DN 32.4 3.2E+02 0.007 31.1 9.7 23 521-543 33-55 (1117)
456 PRK13342 recombination factor 32.3 7E+02 0.015 27.3 18.7 100 548-665 173-275 (413)
457 PF14669 Asp_Glu_race_2: Putat 32.1 4.5E+02 0.0097 24.9 14.2 54 829-882 138-206 (233)
458 PF04781 DUF627: Protein of un 31.7 3.1E+02 0.0068 23.3 7.5 99 764-882 4-103 (111)
459 PF14561 TPR_20: Tetratricopep 31.3 2.9E+02 0.0062 22.4 9.0 62 822-883 21-85 (90)
460 KOG4521 Nuclear pore complex, 30.4 1.1E+03 0.025 29.2 14.8 57 759-816 986-1046(1480)
461 KOG0545 Aryl-hydrocarbon recep 30.0 5.6E+02 0.012 25.4 11.6 69 793-861 232-302 (329)
462 COG5191 Uncharacterized conser 29.8 1.3E+02 0.0027 30.7 5.7 77 787-863 103-182 (435)
463 PRK10564 maltose regulon perip 29.6 65 0.0014 32.7 3.9 39 215-253 259-297 (303)
464 KOG1524 WD40 repeat-containing 29.4 2.8E+02 0.0061 30.5 8.5 49 755-809 572-620 (737)
465 COG0790 FOG: TPR repeat, SEL1 29.3 6.3E+02 0.014 25.8 20.6 111 704-817 91-217 (292)
466 KOG2297 Predicted translation 28.8 6.5E+02 0.014 25.8 12.6 18 793-810 323-340 (412)
467 PF11768 DUF3312: Protein of u 28.8 7.4E+02 0.016 27.8 11.8 127 694-843 412-543 (545)
468 KOG2297 Predicted translation 28.7 6.6E+02 0.014 25.8 11.1 18 723-740 323-340 (412)
469 PF06957 COPI_C: Coatomer (COP 28.7 1.1E+02 0.0023 33.2 5.5 44 813-856 288-333 (422)
470 KOG2300 Uncharacterized conser 28.6 8.3E+02 0.018 27.0 32.1 150 732-881 334-509 (629)
471 PF11663 Toxin_YhaV: Toxin wit 28.3 66 0.0014 28.2 3.1 32 426-459 106-137 (140)
472 KOG3824 Huntingtin interacting 27.8 98 0.0021 31.3 4.6 56 766-823 126-183 (472)
473 PF14689 SPOB_a: Sensor_kinase 27.8 1.2E+02 0.0026 22.5 4.1 26 724-749 26-51 (62)
474 KOG0686 COP9 signalosome, subu 27.7 7.9E+02 0.017 26.4 13.3 58 487-544 152-215 (466)
475 cd02679 MIT_spastin MIT: domai 27.2 1.4E+02 0.0031 23.5 4.6 43 768-817 20-65 (79)
476 COG4941 Predicted RNA polymera 27.0 6.3E+02 0.014 26.4 10.0 115 770-885 270-393 (415)
477 PF08424 NRDE-2: NRDE-2, neces 26.6 7.6E+02 0.016 25.9 16.1 161 719-890 17-213 (321)
478 KOG4567 GTPase-activating prot 26.4 6E+02 0.013 26.1 9.6 78 640-722 263-350 (370)
479 COG0735 Fur Fe2+/Zn2+ uptake r 26.2 2.6E+02 0.0056 25.2 6.8 63 641-704 7-69 (145)
480 PF12796 Ank_2: Ankyrin repeat 26.1 3.3E+02 0.0071 21.5 7.3 20 188-207 29-48 (89)
481 TIGR01503 MthylAspMut_E methyl 25.9 1.8E+02 0.0039 31.6 6.4 57 839-897 70-126 (480)
482 PF04190 DUF410: Protein of un 25.7 7E+02 0.015 25.2 19.2 82 688-784 88-169 (260)
483 KOG4814 Uncharacterized conser 25.2 2.7E+02 0.0059 31.5 7.7 61 826-886 397-457 (872)
484 PF12796 Ank_2: Ankyrin repeat 25.2 2.5E+02 0.0054 22.2 6.1 15 192-206 4-18 (89)
485 cd00280 TRFH Telomeric Repeat 25.0 4.4E+02 0.0096 24.8 7.8 67 737-806 85-158 (200)
486 PRK13342 recombination factor 24.7 9.4E+02 0.02 26.3 18.6 119 652-788 173-302 (413)
487 smart00804 TAP_C C-terminal do 24.6 87 0.0019 23.4 2.8 28 121-148 33-62 (63)
488 PRK09857 putative transposase; 24.5 4.9E+02 0.011 26.8 9.3 64 827-890 210-273 (292)
489 PF03943 TAP_C: TAP C-terminal 24.1 64 0.0014 22.9 2.0 28 121-148 21-50 (51)
490 PF04762 IKI3: IKI3 family; I 23.5 3.5E+02 0.0075 33.3 9.2 50 829-883 878-927 (928)
491 KOG4334 Uncharacterized conser 23.1 26 0.00056 37.3 -0.2 150 140-296 408-573 (650)
492 smart00777 Mad3_BUB1_I Mad3/BU 22.9 5.2E+02 0.011 22.6 8.8 40 776-815 83-123 (125)
493 PF10255 Paf67: RNA polymerase 22.7 3.8E+02 0.0082 29.0 8.2 59 725-783 126-191 (404)
494 PF12862 Apc5: Anaphase-promot 22.7 2.8E+02 0.006 22.6 5.9 22 831-852 49-70 (94)
495 cd08326 CARD_CASP9 Caspase act 22.6 2.7E+02 0.0059 22.3 5.5 38 294-331 41-78 (84)
496 PF11838 ERAP1_C: ERAP1-like C 22.5 8.8E+02 0.019 25.1 19.0 186 697-882 45-262 (324)
497 PF07064 RIC1: RIC1; InterPro 22.2 8.2E+02 0.018 24.7 12.7 159 116-283 86-255 (258)
498 PF13929 mRNA_stabil: mRNA sta 21.8 8.7E+02 0.019 24.8 15.1 62 480-541 197-263 (292)
499 COG5159 RPN6 26S proteasome re 21.7 8.6E+02 0.019 24.7 21.1 32 523-554 10-41 (421)
500 PF04034 DUF367: Domain of unk 21.6 5.5E+02 0.012 22.5 7.6 58 792-849 67-125 (127)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-101 Score=919.65 Aligned_cols=685 Identities=33% Similarity=0.600 Sum_probs=654.3
Q ss_pred CCChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchhhhhHH
Q 045600 109 KPCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLVIQTAL 188 (899)
Q Consensus 109 ~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 188 (899)
+|+..++|.+|++|++.|++++|+.+|+.|...|+.|+..||..++++|.+.+.++.|.++|..+.+.|..+++.++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhh
Q 045600 189 VDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGK 268 (899)
Q Consensus 189 ~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 268 (899)
+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+++|++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 045600 269 SLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPD 348 (899)
Q Consensus 269 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 348 (899)
++|..+++.|+.||+.++|+||++|+++|+++.|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHC
Q 045600 349 LVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRN 428 (899)
Q Consensus 349 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 428 (899)
..||+++|.+|++.|+.+.|.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|.+||+++||++|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHH
Q 045600 429 RFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLF 508 (899)
Q Consensus 429 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (899)
|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..++++||++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH
Q 045600 509 HRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTF 588 (899)
Q Consensus 509 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 588 (899)
++|.++|+++||++|.+|+++|+.++|+++|++|.. +++||..||+.++.+|++.|++
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l--------------------- 505 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGAL--------------------- 505 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchH---------------------
Confidence 999999999999999999999999988888888865 3666666655555555444444
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhccc
Q 045600 589 LNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLI 668 (899)
Q Consensus 589 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 668 (899)
T Consensus 506 -------------------------------------------------------------------------------- 505 (857)
T PLN03077 506 -------------------------------------------------------------------------------- 505 (857)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 669 NSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 669 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
+.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|+++|+.++|+++|++|.
T Consensus 506 ---~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 506 ---MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred ---HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444455556777799999999999999999999999 8999999999999999999999999999999
Q ss_pred HcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 045600 749 LSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMV-EHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILE 827 (899)
Q Consensus 749 ~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 827 (899)
+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|.+.|++++|.+++++|+.+||..+|.
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~ 661 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCcccccC
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLVGD 899 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 899 (899)
+|+.+|..+|+.+.++...+++++++|+++..|..|+++|.+.|+|++|.++++.|+++|++|+||+||||+
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-86 Score=786.34 Aligned_cols=591 Identities=27% Similarity=0.464 Sum_probs=570.8
Q ss_pred hccHHHHhhcCCCCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhHHHHHH
Q 045600 94 ITSYHIALSSFPIIKKPCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGREIHCVI 173 (899)
Q Consensus 94 ~~~~~~a~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 173 (899)
.+....|+.+|++|++||+++||++|++|++.|++++|+.+|++|+..|+.||.+||+.+|++|+..+++..+.++|..+
T Consensus 134 ~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHH
Q 045600 174 FRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSS 253 (899)
Q Consensus 174 ~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 253 (899)
.+.|+.||+.++|+||.+|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHH
Q 045600 254 VIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEA 333 (899)
Q Consensus 254 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 333 (899)
+|.+|++.|+.+.|.++|..|.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 045600 334 FEIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNR 413 (899)
Q Consensus 334 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 413 (899)
+++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.++
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 045600 414 NLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLM 493 (899)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 493 (899)
|+++||++|.+|+++|+.++|+++|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..++++||+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 999999999999999999999999999986 6999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 045600 494 FYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVI 573 (899)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 573 (899)
+|+++|++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++
T Consensus 533 ~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 045600 574 HGYAI-KTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGD-KREISLWNAIISVYVQTNKAKQAVAFFTELLGAGL 651 (899)
Q Consensus 574 ~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 651 (899)
|+.|. +.|+.|+..+|++++++|++.|++++|. +++++++ .||..+|++|+.+|..+|+.+.+....+++.+.
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~---~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-- 686 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY---NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-- 686 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH---HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--
Confidence 99999 6899999999999999999999999999 8888875 789999999999999999999998888888874
Q ss_pred CCC-HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChh
Q 045600 652 EPD-NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVA 691 (899)
Q Consensus 652 ~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 691 (899)
.|+ ...|..+...|+..|++++|.++.+.|++.|+.+++.
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 454 4556666678889999999999999999998887664
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-69 Score=631.91 Aligned_cols=485 Identities=31% Similarity=0.522 Sum_probs=476.6
Q ss_pred CCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHH
Q 045600 412 NRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAG-LNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNA 490 (899)
Q Consensus 412 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 490 (899)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.|+..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHH
Q 045600 491 LLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQG 570 (899)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 570 (899)
++++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 045600 571 MVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAG 650 (899)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 650 (899)
.+++..+.+.|+.||..++++|+++|+++|++++|. ++|+.+..+|+.+||++|.+|++.|++++|+++|++|.+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~---~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR---CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH---HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 045600 651 LEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMING 730 (899)
Q Consensus 651 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 730 (899)
+.||..||++++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|+++|++++|.++|++|..||..+||+||.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCccCcchHHHHHHHHhhcCChHH
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMV-EHGISQKMEHYACMVDLLGRTGHLNE 809 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~ 809 (899)
|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999998 57999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 810 AFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 810 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
|.+++++|+..|+..+|++++.+|..+|+.+.|+.+++++.+..|++...|..|+++|.+.|++++|.+++++|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccC
Q 045600 890 KVPGFSLVGD 899 (899)
Q Consensus 890 ~~~~~~~~~~ 899 (899)
+.||+||||.
T Consensus 561 k~~g~s~i~~ 570 (697)
T PLN03081 561 MHPACTWIEV 570 (697)
T ss_pred cCCCeeEEEE
Confidence 9999999984
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.7e-70 Score=633.67 Aligned_cols=475 Identities=22% Similarity=0.366 Sum_probs=462.4
Q ss_pred CCChhhHHHHHHHHhcCCChhhHHHHHHHHHhcC-CCCCCCcHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchhhhhH
Q 045600 109 KPCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSG-CPSDDFTFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLVIQTA 187 (899)
Q Consensus 109 ~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 187 (899)
.++..+||++|.+|.+.|++++|+++|..|...+ +.||.+||+.++++|++.++++.|.++|..|.+.|+.||+.+||+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhh
Q 045600 188 LVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFG 267 (899)
Q Consensus 188 l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 267 (899)
|+++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 045600 268 KSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQP 347 (899)
Q Consensus 268 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (899)
+++|..+.+.|+.+|..++++||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 045600 348 DLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVR 427 (899)
Q Consensus 348 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 427 (899)
|..||++++.+|++.|+++.|.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH-hCCCCcHhHHHHHHHHHHcCCChHHHHH
Q 045600 428 NRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLR-KGIVSNLDVLNALLMFYSDGGQFSYAFT 506 (899)
Q Consensus 428 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (899)
+|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 045600 507 LFHRMST-RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVA 584 (899)
Q Consensus 507 ~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 584 (899)
++++|+. |+..+|++++.+|..+|+++.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+..
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999975 8999999999999999999999999999975 6664 6799999999999999999999999999999864
Q ss_pred C
Q 045600 585 D 585 (899)
Q Consensus 585 ~ 585 (899)
.
T Consensus 562 ~ 562 (697)
T PLN03081 562 H 562 (697)
T ss_pred C
Confidence 3
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-67 Score=609.21 Aligned_cols=527 Identities=17% Similarity=0.253 Sum_probs=394.8
Q ss_pred CchhhhhHHHHHHHhcCChHHHHHHhccCCCCCcee-----HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 045600 180 QNLVIQTALVDFYAKKGEMLTARLLFDQIPLADLVS-----CNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSV 254 (899)
Q Consensus 180 ~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 254 (899)
++...|..++..|++.|++++|.++|++|+.++.+. ++.++.+|++.|..++|+.+|+.|.. ||..||+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 344455555555555555555555555555443332 23344445555555555555555542 555555555
Q ss_pred HHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcC----CCCcccHHHHHHHHHcCCCh
Q 045600 255 IPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLL----EKNASVWNAMISAYTQSKKF 330 (899)
Q Consensus 255 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~ 330 (899)
|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|+++.|.++|++|. .||+++||+||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 55555555555555555555555556666666666666666666666666666664 45677777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHH--hCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 045600 331 FEAFEIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIK--NGLGNQPSVLTALLSMYAKLGNIDSAKFLFD 408 (899)
Q Consensus 331 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 408 (899)
++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|++++++|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777777778888888888888888888888888888888765 5677888888888888888888888888888
Q ss_pred cCCC----CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc
Q 045600 409 QIPN----RNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSN 484 (899)
Q Consensus 409 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 484 (899)
.|.+ |+..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 8865 456889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045600 485 LDVLNALLMFYSDGGQFSYAFTLFHRMS----TRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPN 560 (899)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 560 (899)
..+|+++|.+|+++|++++|.++|++|. .||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999995 589999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHH---HHhhcCCCCChhhHHHHHHHHHHcCCHH
Q 045600 561 LNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCL---LLFQMGDKREISLWNAIISVYVQTNKAK 637 (899)
Q Consensus 561 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~ 637 (899)
|++.|++++|.++++.|.+.|+.||..+|++++.++.+ .++++.... ..++.+...+...| .+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~ 829 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW------------TS 829 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch------------HH
Confidence 99999999999999999999999999999999876432 233332100 22222222222222 35
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC
Q 045600 638 QAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI 717 (899)
Q Consensus 638 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 717 (899)
+|+.+|++|++.|+.||..||+.+|.+++..+..+.+..+++.|...+..
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~------------------------------ 879 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS------------------------------ 879 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC------------------------------
Confidence 68888888888888888888877775544444444444444443333333
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Q 045600 718 YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI 757 (899)
Q Consensus 718 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 757 (899)
|+..+|+++|+++.+. .++|..++++|.+.|+.|+..
T Consensus 880 -~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 880 -QKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred -cchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 4555666666666332 368999999999999999875
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.7e-65 Score=591.87 Aligned_cols=528 Identities=17% Similarity=0.205 Sum_probs=390.5
Q ss_pred cchhhHHHHhhhcCCChhhHHHHHhhcCCCCccc-----HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 045600 283 DFLVPALISMYAGDLDLSTARKLFDSLLEKNASV-----WNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIP 357 (899)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 357 (899)
...|..++..+++.|++++|.++|++|++++... ++.++.+|.+.|..++|+.+|+.|.. ||..||+.+|.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 3334444444444444444444444444333322 22233334444444444444444432 44444444444
Q ss_pred HhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHHCCChhH
Q 045600 358 SCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIP----NRNLLCWNAMMSAYVRNRFWDA 433 (899)
Q Consensus 358 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 433 (899)
+|++.|+++.|.++++.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+.+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 444444444444444444444455555555555556666666666666666665 3566667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH--hCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhc
Q 045600 434 SLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLR--KGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRM 511 (899)
Q Consensus 434 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (899)
|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+ .|+.||..+|+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777777778888888888888888888888888877765 567778788888888888888888888888877
Q ss_pred CC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh
Q 045600 512 ST----RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVT 587 (899)
Q Consensus 512 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 587 (899)
.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 65 46678888888888888888899999999888899999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHhcCChhhhhhHH-HHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc
Q 045600 588 FLNALITMYCNCGSTNDGRLCL-LLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGV 666 (899)
Q Consensus 588 ~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 666 (899)
+|++|+.+|+++|++++|..++ ++......||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999887333 222233578999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 045600 667 LINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQ 746 (899)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 746 (899)
+.|+++.|.+++..|.+.|+.|+..+|++++.+|. +++++|.++.+.+.. |+. .......+..+.|+.+|++
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999997654 246666555443331 110 1111122344679999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCCH
Q 045600 747 MQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL---PCKPSV 823 (899)
Q Consensus 747 m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~ 823 (899)
|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.+++++.+. .++|+.++++| ++.|+.
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999988889999999999999998888889999999999998432 46899999998 666765
Q ss_pred H
Q 045600 824 S 824 (899)
Q Consensus 824 ~ 824 (899)
.
T Consensus 916 ~ 916 (1060)
T PLN03218 916 S 916 (1060)
T ss_pred c
Confidence 3
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-41 Score=417.37 Aligned_cols=791 Identities=13% Similarity=0.072 Sum_probs=503.7
Q ss_pred HHHhhhHHhhhccHHHHhhcCCCC---CCCChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccC
Q 045600 84 LALRTLEAFEITSYHIALSSFPII---KKPCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSL 160 (899)
Q Consensus 84 ~~~~~~~~~~~~~~~~a~~~f~~~---~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 160 (899)
...+....+..+.+..|...|... .+.+...|..+..++...|++++|+..|+++...+.. +......+..++...
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 103 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQ 103 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHC
Confidence 333344455566777777777653 3456778888899999999999999999998876543 344455566777777
Q ss_pred CChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCC---CCCceeHHHHHHHHHcCCCchHHHHHHH
Q 045600 161 SDLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIP---LADLVSCNTLMAGYSFNGLDQEALETFR 237 (899)
Q Consensus 161 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (899)
|+++.|...+........+.+...+..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|.++++
T Consensus 104 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 104 GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777666554322333445566667777777777777777777653 2345566777777777777777777777
Q ss_pred HHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCC---Cc
Q 045600 238 RILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEK---NA 314 (899)
Q Consensus 238 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~ 314 (899)
++.... +++...+..+...+...|+.+.|.+.++.+++.. +.+..++..++..+...|++++|...++.+.+. +.
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 776543 2344556666666667777777777777776654 345556666666777777777777777766332 22
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHhhccCCcccchHHHHHHHHhCC-------------
Q 045600 315 SVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDL-VTFVSIIPSCENYCSFQCGESLTACVIKNGL------------- 380 (899)
Q Consensus 315 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~------------- 380 (899)
..+......+...|++++|...|+++.+.+ |+. ..+..+...+...|+++.|...+..+.+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 222222333445566666666666655433 221 1122222334445555555555555444321
Q ss_pred --------------------CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHH
Q 045600 381 --------------------GNQPSVLTALLSMYAKLGNIDSAKFLFDQIPN---RNLLCWNAMMSAYVRNRFWDASLAV 437 (899)
Q Consensus 381 --------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 437 (899)
+.+...+..+...+.+.|++++|.+.|+++.+ .+...|..+...+...|++++|.+.
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 419 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIAD 419 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHH
Confidence 12333444444444444445544444444432 1223344444444445555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---C
Q 045600 438 FRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---R 514 (899)
Q Consensus 438 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 514 (899)
|+++.+.... +......++..+.+.|+.++|..++..+.+. .+.+..++..+...+...|++++|...|+++.. .
T Consensus 420 ~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 420 LETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 5444433211 1122233344445555555555555555442 233455666666667777777777777766543 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 515 SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALIT 594 (899)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 594 (899)
+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+...|+.++|..+++.+.+.+. .+...+..+..
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 575 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQ 575 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHH
Confidence 44556666666667777777777777766532 23455666666666677777777777777665542 34455666777
Q ss_pred HHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHH
Q 045600 595 MYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLT 674 (899)
Q Consensus 595 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 674 (899)
.|.+.|+.++|...++......+.+...|..+...|...|++++|...|+++.+.. +.+...+..+..++...|++++|
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 77777777777644433333344566777777777888888888888887777653 33455666677777777888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 045600 675 HSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSG 751 (899)
Q Consensus 675 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 751 (899)
...++.+.+.... +...+..++..+...|++++|.++++.+. .++...+..+...+...|++++|++.++++.+
T Consensus 655 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-- 731 (899)
T TIGR02917 655 ITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-- 731 (899)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 8887777765433 45667777777777888888888777775 33556677777788888888888888888877
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 045600 752 VRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESL 829 (899)
Q Consensus 752 ~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 829 (899)
..|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.++++ ..++++..+..+
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45655677777778888888888888888877543 334577777888888888888888888877 334456677788
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
+..+...|+ .+|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.++.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888888888 77888888888888888888888888888888888888888888876653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.7e-41 Score=412.57 Aligned_cols=777 Identities=11% Similarity=0.018 Sum_probs=654.9
Q ss_pred hhhccHHHHhhcCCCCC----CCChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhh
Q 045600 92 FEITSYHIALSSFPIIK----KPCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGR 167 (899)
Q Consensus 92 ~~~~~~~~a~~~f~~~~----~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 167 (899)
...+.++.|...|.... +.....+..+..++...|++++|...|+++..... .+..++..+...+...|+++.|.
T Consensus 101 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 179 (899)
T TIGR02917 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEAR 179 (899)
T ss_pred HHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHH
Confidence 44567889999998764 22356788889999999999999999999877532 34557778888899999999999
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCC---CCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 045600 168 EIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIP---LADLVSCNTLMAGYSFNGLDQEALETFRRILTVGL 244 (899)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 244 (899)
.++..+++.. +.+...+..+...+.+.|++++|...|++.. +.+..+|..++..+.+.|++++|...++.+.+...
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 258 (899)
T TIGR02917 180 ALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP 258 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999998765 4577888889999999999999999999863 44677899999999999999999999999987643
Q ss_pred CCCcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCC---CCcccHHHHH
Q 045600 245 KPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLE---KNASVWNAMI 321 (899)
Q Consensus 245 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li 321 (899)
.. ..........+...|+++.|...+..+++.+.. +...+..+...+...|+++.|...|+.+.+ .+...+..+.
T Consensus 259 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 336 (899)
T TIGR02917 259 NS-PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLA 336 (899)
T ss_pred CC-chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 32 222323333455789999999999999887632 233444556678899999999999998753 3556778888
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 045600 322 SAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNID 401 (899)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (899)
..+.+.|++++|...+..+.+.. ..+...+..+...+...|+++.|...+..+.+.. +.+...+..+...+...|+++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChH
Confidence 99999999999999999998764 3456778888889999999999999999988764 345677888999999999999
Q ss_pred HHHHHHhcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 045600 402 SAKFLFDQIPNR---NLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLR 478 (899)
Q Consensus 402 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 478 (899)
+|.+.|+.+.+. +...+..++..+.+.|++++|.++++++... .+++..++..+...+...|+.++|.+.+..+.+
T Consensus 415 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999987642 3446777888999999999999999999875 345677889999999999999999999999987
Q ss_pred hCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045600 479 KGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLI 555 (899)
Q Consensus 479 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 555 (899)
.. +.+...+..+...+...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...++++.+.+ +.+...+.
T Consensus 494 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 571 (899)
T TIGR02917 494 IE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPAL 571 (899)
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHH
Confidence 54 34556777889999999999999999999865 367789999999999999999999999998752 34567788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCC
Q 045600 556 SFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNK 635 (899)
Q Consensus 556 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 635 (899)
.+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...++-.....+.+...+..+...+.+.|+
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 89999999999999999999998754 45678899999999999999999844443334445577889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHh
Q 045600 636 AKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGS 715 (899)
Q Consensus 636 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 715 (899)
+++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+.. +...+..+...+.+.|++++|.+.+++
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998864 445788889999999999999999999999888643 667788889999999999999999999
Q ss_pred cC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcc
Q 045600 716 LI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKME 792 (899)
Q Consensus 716 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 792 (899)
+. .|+..++..++..+.+.|++++|.+.++++.+. .| +...+..+...|...|++++|.++|+++.+.. +++..
T Consensus 729 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 805 (899)
T TIGR02917 729 ALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAV 805 (899)
T ss_pred HHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHH
Confidence 87 566678888999999999999999999999984 45 56788888899999999999999999999654 44568
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASA 870 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 870 (899)
.+..++..+...|+ .+|+++++++ ...| ++..+..+...+...|++++|...++++++.+|.++.++..++.+|.+.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 89999999999999 8899999987 4344 4556788889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHH
Q 045600 871 GRWEDAYRVRSCMK 884 (899)
Q Consensus 871 g~~~eA~~~~~~~~ 884 (899)
|++++|.+++++|.
T Consensus 885 g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 885 GRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.8e-24 Score=259.13 Aligned_cols=633 Identities=11% Similarity=0.012 Sum_probs=399.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcchh-----------
Q 045600 219 LMAGYSFNGLDQEALETFRRILTVGLKP-NVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLV----------- 286 (899)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----------- 286 (899)
.+.-+-..++.+.|.+.++++... .| |...+..+...+...|+.++|.+.++...+..... ....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~-~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS-NAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHhcCC
Confidence 344556778888888888877654 34 34456666666777777777877777777765221 1111
Q ss_pred -----hHHHHhhhcCCChhhHHHHHhhcCCCCcccHH----HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 045600 287 -----PALISMYAGDLDLSTARKLFDSLLEKNASVWN----AMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIP 357 (899)
Q Consensus 287 -----~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 357 (899)
..+...+...|++++|.+.|+...+.+..... .........|+.++|++.|+++.+.... +......+-.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 12223445555555555555555432211111 0001111235555555555555544211 2223333334
Q ss_pred HhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHH
Q 045600 358 SCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAV 437 (899)
Q Consensus 358 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 437 (899)
.+...|+.++|...++.+.+..... ..............+.... ....+...+..+-.....+.|...
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~-~~aa~~~~~~l~~~~~~~~-----------~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGR-DAAAQLWYGQIKDMPVSDA-----------SVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccCCChh-----------hHHHHHHHHHHCCCchHHHHHHHH
Confidence 4444444444544444443321000 0000000000000000000 001111112222222233445555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC--CC
Q 045600 438 FRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST--RS 515 (899)
Q Consensus 438 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 515 (899)
+.++......|+.... ..-..+...|++++|...++..++.. +.+...+..+...|.+.|++++|...|++..+ |+
T Consensus 258 L~~~~~~~~dp~~~~~-~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 258 LAEQQKQLADPAFRAR-AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHhccCcchHHH-HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5554443323332221 22334556778888888887777653 23566777777888888888888888877654 22
Q ss_pred h---hhHHH------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 045600 516 S---VSWNT------------LISRCVQNGAVEEAVILLQRMQKEGVEL-DMVTLISFLPNLNKNGNIKQGMVIHGYAIK 579 (899)
Q Consensus 516 ~---~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 579 (899)
. ..|.. ....+.+.|++++|+..|++..+. .| +...+..+...+...|++++|.+.|+++.+
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11221 234567788899999999888874 44 455666777888888999999999888887
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCC------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045600 580 TGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKR------------EISLWNAIISVYVQTNKAKQAVAFFTELL 647 (899)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 647 (899)
.... +...+..+...|. .++.++|. ..++..... ....+..+...+...|++++|++.|++..
T Consensus 414 ~~p~-~~~a~~~L~~l~~-~~~~~~A~---~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 414 MDPG-NTNAVRGLANLYR-QQSPEKAL---AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred hCCC-CHHHHHHHHHHHH-hcCHHHHH---HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6432 3445555666664 45667776 444333221 12245566778889999999999999999
Q ss_pred HCCCCCC-HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC----CH-
Q 045600 648 GAGLEPD-NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYK----DA- 721 (899)
Q Consensus 648 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~- 721 (899)
+.. |+ ...+..+...+.+.|++++|...++.+.+.... +...+..+...+...++.++|.+.++++... +.
T Consensus 489 ~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 489 ALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 864 44 456667788899999999999999999876543 4444455556677899999999999988622 11
Q ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcch
Q 045600 722 --------FSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEH 793 (899)
Q Consensus 722 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 793 (899)
..+..+...+...|+.++|+++++. ..++...+..+...+.+.|++++|+..|+++.+.. +.+...
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a 639 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADA 639 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 1123456778899999999999872 23355677788889999999999999999999643 234588
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc------hhHHHHHH
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENP------GSYVMLHN 865 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~ 865 (899)
+..++.+|...|++++|.+.+++. ...|+ ...+..+...+...|+.++|...++++++..|+++ ..+..++.
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 889999999999999999999987 44454 45567788888899999999999999999887654 36677899
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 045600 866 IYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 866 ~y~~~g~~~eA~~~~~~~~~ 885 (899)
+|.+.|++++|+..|++...
T Consensus 720 ~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.2e-23 Score=257.78 Aligned_cols=616 Identities=13% Similarity=0.017 Sum_probs=427.8
Q ss_pred HHHHHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcc---cH-----------
Q 045600 252 SSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNAS---VW----------- 317 (899)
Q Consensus 252 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~----------- 317 (899)
...++..-..++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.+++..+.++. .+
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 334455567778888888888777664 335667777777788888888888888877543221 11
Q ss_pred -----HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHH
Q 045600 318 -----NAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLV-TFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALL 391 (899)
Q Consensus 318 -----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 391 (899)
-.+...+.+.|++++|+..|+.+.+.+. |+.. ............++.++|...++.+.+.. +.+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 1223356777888888888888776432 2221 11111111224567777777777777664 33555666777
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhccCCChHHHH
Q 045600 392 SMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAV-SIISVLSGCSKLDDVLLGK 470 (899)
Q Consensus 392 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~ 470 (899)
..+...|+.++|...++++...... +...+...+..+...+..|+.. .+...+..+......+.+.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 7777777777777777776432210 1111122222222222222221 2333333444444455566
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045600 471 SAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST--R-SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGV 547 (899)
Q Consensus 471 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 547 (899)
..+.........|.... ......+...|++++|...|++... | +...+..+...+.+.|++++|+..|++..+...
T Consensus 256 ~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred HHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66665544433444322 2335567789999999999998765 3 678899999999999999999999999887432
Q ss_pred CC-CHHHH------------HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhc
Q 045600 548 EL-DMVTL------------ISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQM 614 (899)
Q Consensus 548 ~p-~~~t~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 614 (899)
.. ....+ ......+.+.|++++|...++++++... .+...+..+...|...|++++|...++....
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 11111 1223466789999999999999998753 3456777889999999999999954444444
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------CCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCC
Q 045600 615 GDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLE--------PDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGL 686 (899)
Q Consensus 615 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 686 (899)
..+.+...+..+...|. .++.++|+..++.+...... .....+..+...+...|++++|...+++..+..+
T Consensus 414 ~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P 492 (1157)
T PRK11447 414 MDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP 492 (1157)
T ss_pred hCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44556667777777774 46789999888765432100 0112344456667889999999999999998765
Q ss_pred CCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh------
Q 045600 687 DKHVAVSNALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI------ 757 (899)
Q Consensus 687 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------ 757 (899)
. +...+..+...|.+.|++++|.+.++++. .| ++..+..+...+...++.++|+..++++......++..
T Consensus 493 ~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 493 G-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 5 56677889999999999999999999885 33 55566666666778899999999998865433333221
Q ss_pred ---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045600 758 ---TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGA 832 (899)
Q Consensus 758 ---t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 832 (899)
.+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.+++. ...| +...+..++..
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~ 646 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEV 646 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 123456678899999999999872 2445567788999999999999999999988 4445 46678899999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 045600 833 CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVP 892 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 892 (899)
+...|+.++|++.++++.+..|+++..+..++.+|.+.|++++|.++++++.....+..|
T Consensus 647 ~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 999999999999999999999999999999999999999999999999999876554444
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.2e-22 Score=233.15 Aligned_cols=629 Identities=11% Similarity=0.012 Sum_probs=340.2
Q ss_pred hcCChHHHHHHhccCC---CCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHH
Q 045600 194 KKGEMLTARLLFDQIP---LADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSL 270 (899)
Q Consensus 194 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 270 (899)
..|++++|...|+... +.+...+..|...|.+.|+.++|+..+++..+. .|+-..|..++..+ ++.++|.++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 3488888888888764 224566788888888888888888888888765 45555555544333 777788888
Q ss_pred HHHHHHhCCCCCcchhhHHHHh--------hhcCCChhhHHHHHhhcCCCC--cccHHHH-HHHHHcCCChhHHHHHHHH
Q 045600 271 HGFTIKSGYLFDDFLVPALISM--------YAGDLDLSTARKLFDSLLEKN--ASVWNAM-ISAYTQSKKFFEAFEIFRQ 339 (899)
Q Consensus 271 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~~~~l-i~~~~~~g~~~~A~~l~~~ 339 (899)
++++++... .+..++..+... |.+.+....+.+ .+...++ ..+.... ...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 888877752 233444444443 666655555555 2332332 3333333 6777778888888888888
Q ss_pred HHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCcchH
Q 045600 340 MIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAK-LGNIDSAKFLFDQIPNRNLLCW 418 (899)
Q Consensus 340 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 418 (899)
+.+.++.. ..-... |...|.. .++ +++..+++...+.+...+
T Consensus 208 L~k~~pl~-~~~~~~-----------------------------------L~~ay~q~l~~-~~a~al~~~~lk~d~~l~ 250 (987)
T PRK09782 208 ARQQNTLS-AAERRQ-----------------------------------WFDVLLAGQLD-DRLLALQSQGIFTDPQSR 250 (987)
T ss_pred HHhcCCCC-HHHHHH-----------------------------------HHHHHHHhhCH-HHHHHHhchhcccCHHHH
Confidence 87765332 222222 3333333 233 444444443223344455
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHH
Q 045600 419 NAMMSAYVRNRFWDASLAVFRQMQFAGLN-PDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSN-LDVLNALLMFYS 496 (899)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 496 (899)
..+...|.+.|+.++|.++++++...-.. |+..++.-++.-..... ..+..-+.. ...++ ....-.+++.+.
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLL 324 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555433211 33333333322221111 000000000 00000 011222355566
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHH
Q 045600 497 DGGQFSYAFTLFHRMSTRSSVSWNTLISR--CVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIH 574 (899)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 574 (899)
+.+.++.+.++.. ..|.... ..+.. ....+...++...+..|.+. .+-+.....-+--.....|+.++|..++
T Consensus 325 ~~~~~~~~~~~~~--~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 325 KEGQYDAAQKLLA--TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred hccHHHHHHHHhc--CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6666665555532 1221111 11211 11224445555555555442 1113333323333334556666666666
Q ss_pred HHHHHh-C-CCCChhHHHHHHHHHHhcCChhhhhhHHHH-------------------------hhcCC---CC--Chhh
Q 045600 575 GYAIKT-G-CVADVTFLNALITMYCNCGSTNDGRLCLLL-------------------------FQMGD---KR--EISL 622 (899)
Q Consensus 575 ~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------------------------~~~~~---~~--~~~~ 622 (899)
...... + -..+.....-++..|.+.+..........+ +.... ++ +...
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 665542 1 122333444555666655553332211111 11111 12 4455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVR 702 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 702 (899)
|..+..++.. ++.++|+..+.+.... .|+......+..++...|++++|...++.+... .|+...+..+...+.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 6666665555 6666777766666554 255444333344445677777777777765443 2223334455566667
Q ss_pred cCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 045600 703 CGNISMARKLFGSLIYK---DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVF 779 (899)
Q Consensus 703 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~ 779 (899)
.|+.++|.+.+++.... +...+..+...+...|++++|+..+++..+ ..|+...+..+..++.+.|++++|...+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777666522 222222233333445777777777777766 5566666666666777777777777777
Q ss_pred HHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 780 KSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 780 ~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
++..+. .|+. ..+..+..++...|+.++|.+.+++. ...| ++..+..+...+...|++++|+..++++++++|++
T Consensus 633 ~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 633 RAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 777643 3433 56666667777777777777777665 3344 34456677777777777777777777777777777
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 857 PGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 857 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
..+....+++..+..+++.|.+.+++.-...
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7777777777777777777777666654433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.1e-20 Score=220.39 Aligned_cols=672 Identities=9% Similarity=-0.018 Sum_probs=404.1
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCC-CCcHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHH
Q 045600 123 SNCGLHADLLHVYIKCRLSGCPSD-DFTFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTA 201 (899)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A 201 (899)
...|++++|+..|++.++. .|+ ..++..+.+++...|+.++|....++.++... .|...+..+. ..++.++|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La----~i~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLA----AIPVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHH----HhccChhH
Confidence 3448999999999988765 343 55677888889999999999999988887653 4555555542 22888899
Q ss_pred HHHhccCC--CC-CceeHHHHHHH--------HHcCCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHhhccCChhhhhH
Q 045600 202 RLLFDQIP--LA-DLVSCNTLMAG--------YSFNGLDQEALETFRRILTVGLKPNVSTFSSV-IPVCTRLGHFCFGKS 269 (899)
Q Consensus 202 ~~~f~~~~--~~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~ 269 (899)
..+++++. .| +...+..+... |.+.+...+++ + .......|+..+.... ...+...|+++.+..
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999874 33 23344444443 66664444444 4 3333344455545555 788889999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHhhhc-CCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-C
Q 045600 270 LHGFTIKSGYLFDDFLVPALISMYAG-DLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQ-P 347 (899)
Q Consensus 270 ~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p 347 (899)
++..+++.+. .+......|...|.. .++ +.|..+++...+.+...+..+...|.+.|+.++|.++++++...-.. |
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 9999999873 335556666668887 466 88888887666678889999999999999999999999998765433 5
Q ss_pred CHhhHHHHHHHhhccCCcc-cchHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 045600 348 DLVTFVSIIPSCENYCSFQ-CGESLTACVIKNGLGNQ-PSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAY 425 (899)
Q Consensus 348 ~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 425 (899)
+..++.-.+. +.+... .+..-+.. .+.++ ....-.+++.+.+.+.++.+.++.. ....+. ..-.-..+.
T Consensus 282 ~~~~~~~~l~---r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~ 352 (987)
T PRK09782 282 QEKSWLYLLS---KYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVS 352 (987)
T ss_pred ccHHHHHHHH---hccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhc
Confidence 5555544443 322221 01110100 01111 1122345888999999998887744 222222 221112223
Q ss_pred HHCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCChHHHHHHHHHHHHh-C-CCCcHhHHHHHHHHHHcCCChH
Q 045600 426 VRNRFWDASLAVFRQMQFAGLNP-DAVSIISVLSGCSKLDDVLLGKSAHAFSLRK-G-IVSNLDVLNALLMFYSDGGQFS 502 (899)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~ 502 (899)
...+...++...++.|.+. .| +.....-+--.....|+.++|.+++...... + -.++....+-++..|.+.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred cccCchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 3457777888888878765 23 2222222223345677888888888877662 1 2235556667888888887755
Q ss_pred HHHHHHhh---cCCCChhhHHHHHHHHHhcCCHHHH---HHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCChHHHHHHH
Q 045600 503 YAFTLFHR---MSTRSSVSWNTLISRCVQNGAVEEA---VILLQRMQKEGVEL--DMVTLISFLPNLNKNGNIKQGMVIH 574 (899)
Q Consensus 503 ~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~ 574 (899)
...++..- +..+.. +.-.|+..++ .+.+...... .++ +...+..+..++.. ++.++|...+
T Consensus 431 ~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQ---------RQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred chHHHHHhccccccchh---------HHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 44444333 222222 1112333332 3333333221 122 44455555555544 6666677766
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 045600 575 GYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPD 654 (899)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 654 (899)
....... |+......+.. .+...|++++|...|+++... .|+
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~----------------------------------al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAY----------------------------------QAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred HHHHHhC--CchHHHHHHHH----------------------------------HHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 5555433 23222112222 223455555555555554332 233
Q ss_pred HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Q 045600 655 NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YKDAFSWSVMINGYG 732 (899)
Q Consensus 655 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~ 732 (899)
...+..+..++.+.|+.+.|...++...+.... ....+..+.....+.|++++|...+++.. .|+...|..+...+.
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYR 620 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333444444455556666666666555554321 22222223333344577777777777766 456667777777777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHH
Q 045600 733 LYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEA 810 (899)
Q Consensus 733 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 810 (899)
+.|++++|+..+++..+ ..|+. ..+..+..++...|++++|...+++..+. .|+ ...+..+..++...|++++|
T Consensus 621 ~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 621 QRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777776 56643 45566666777777777777777777743 333 36667777777777777777
Q ss_pred HHHHHhC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 045600 811 FIFVKKL-PCKPSV-SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRW 873 (899)
Q Consensus 811 ~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 873 (899)
...+++. ...|+. .+............+++.+.+.+++....+|... +....+.++..+|++
T Consensus 697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 697 QHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 7777766 555654 3444555666666677777777777777777655 555666666655544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-19 Score=185.50 Aligned_cols=442 Identities=15% Similarity=0.143 Sum_probs=346.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 045600 418 WNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLS-GCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYS 496 (899)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 496 (899)
-..+..-..+.|++++|++.-...-+.. |+..--..+++ .+.+..+.+...+.-...++. .+--.++|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 3445566667788888887665544332 22222222222 233333444333322222222 1234567888889999
Q ss_pred cCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhcCCChHHHHH
Q 045600 497 DGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFL-PNLNKNGNIKQGMV 572 (899)
Q Consensus 497 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~ 572 (899)
..|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ ..+...|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998876 3578899999999999999999999999887 778766554433 34445789999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 045600 573 IHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDK---REISLWNAIISVYVQTNKAKQAVAFFTELLGA 649 (899)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 649 (899)
.+-+.++.... -...|+-|...+-..|+...|. .-+++... .-...|-.|...|...+.+++|+..+.+....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~ai---q~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAI---QHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHH---HHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88888776432 2355777888888899999988 55555443 34567888999999999999999999988774
Q ss_pred CCCCC-HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHH
Q 045600 650 GLEPD-NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YK-DAFSWS 725 (899)
Q Consensus 650 g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~ 725 (899)
.|+ ...+..+...|...|.++.|...+++.++..+. -...|+.|..++-..|++.+|.+.+++.. .| ...+.+
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 454 456777777788999999999999998887543 35678999999999999999999999987 33 567889
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhh
Q 045600 726 VMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGR 803 (899)
Q Consensus 726 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~ 803 (899)
.|...|...|.++.|..+|....+ +.|.- ..++.|...|-++|++++|+..|++.+ .+.|+. ..|+.+.+.|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHH
Confidence 999999999999999999999998 88875 489999999999999999999999998 778887 899999999999
Q ss_pred cCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 045600 804 TGHLNEAFIFVKKL-PCKPSV-SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 804 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~e 875 (899)
.|+.+.|.+.+.+. ...|.. .....|...+...|++.+|+..|+.++++.|+.|.++.+|.+++.--.+|.+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999988 677764 4678899999999999999999999999999999999999998876555544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.1e-16 Score=174.03 Aligned_cols=467 Identities=14% Similarity=0.103 Sum_probs=290.5
Q ss_pred CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHH
Q 045600 414 NLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLN--PDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNAL 491 (899)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 491 (899)
|.+..+.|...|.-.|+++.+..+...+...-.. .-...|--+-+++-..|+++.|..+|-...+..-..-...+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3344444444444444444444444444332100 01112333444444445555555554444432222112223345
Q ss_pred HHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 045600 492 LMFYSDGGQFSYAFTLFHRMST--R-SSVSWNTLISRCVQNG----AVEEAVILLQRMQKEGVELDMVTLISFLPNLNKN 564 (899)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 564 (899)
..+|.+.|+++.+...|+++.. | +..+...+...|...+ ..++|..++.+..+. .+.|...|..+...+...
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhc
Confidence 5666666666666666666644 2 2334444444444443 334555555554442 222444554444444433
Q ss_pred CChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcC----CCC------ChhhHHHHHHHH
Q 045600 565 GNIKQGMVIHGYAI----KTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMG----DKR------EISLWNAIISVY 630 (899)
Q Consensus 565 g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~------~~~~~~~li~~~ 630 (899)
.- ...+.++..+. ..+-.+.+...|.+...+...|.++.|...+.-.... ..+ ++.+-..+...+
T Consensus 428 d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 32 22255544433 3344466667777777777777777776222111111 111 222233455566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhH-HHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCChhHHHHHHHHhHhcCCHHH
Q 045600 631 VQTNKAKQAVAFFTELLGAGLEPDNVT-VLSIISAGVLINSLNLTHSLMAFVIRK-GLDKHVAVSNALMDSYVRCGNISM 708 (899)
Q Consensus 631 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~ 708 (899)
-..++++.|.+.|..+.+. .|+-++ |..+.......+...+|...+...... .. ++..++.+.+.+.+...+.-
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~--np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS--NPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC--CcHHHHHHHHHHHhhhhhcc
Confidence 6677889999999998886 365443 333332233446777888888777765 33 44445566668888888888
Q ss_pred HHHHHHhcC-----CCCHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccC
Q 045600 709 ARKLFGSLI-----YKDAFSWSVMINGYGL------------YGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAG 770 (899)
Q Consensus 709 A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g 770 (899)
|.+-|+... .+|+.+.-+|.+.|.. .+..++|+++|.+... ..| |...-+-+.-+++..|
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhcc
Confidence 877555443 3466666666665543 2457889999999887 677 7778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Q 045600 771 LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL----PCKPSVSILESLLGACRIHGNVELGEIIS 846 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 846 (899)
++.+|..+|.+..+... ....+|..++++|...|+|-.|++.|+.. ....++..+..|.+++...|.+.+|...+
T Consensus 661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999996542 35578889999999999999999999877 34457778899999999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhc-------------------CChHHHHHHHHHHHhCCCc
Q 045600 847 GMLFEMDPENPGSYVMLHNIYASA-------------------GRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 847 ~~~~~~~p~~~~~~~~l~~~y~~~-------------------g~~~eA~~~~~~~~~~~~~ 889 (899)
..+..+.|.|+...++++-+..+. +..++|.++|..|...+.+
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999998888776543 3677888899988876654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=4.9e-19 Score=181.66 Aligned_cols=420 Identities=12% Similarity=0.155 Sum_probs=333.3
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC
Q 045600 455 SVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGA 531 (899)
Q Consensus 455 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 531 (899)
.+..-..+.|++++|++.-...-... +.+....-.+-..+....+++.....-....+ .-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34445566788888877544333221 22222222333445555566554443222222 246789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChhhhhhHH
Q 045600 532 VEEAVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTF-LNALITMYCNCGSTNDGRLCL 609 (899)
Q Consensus 532 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~ 609 (899)
.++|+.+++.+.+ ++|+ ...|..+..++...|+.+.|.+.|...++.+ |+... .+-+...+-..|++++|..++
T Consensus 132 ~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999998 6775 6789999999999999999999998888753 44322 233455566688999987444
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC
Q 045600 610 LLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPD-NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK 688 (899)
Q Consensus 610 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 688 (899)
.-.-+....-.+.|+.|...+-..|+...|+..|++..+. .|+ ...|..|-..+...+.++.|...+.+.......
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn- 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN- 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-
Confidence 3333333445678999999999999999999999999884 455 356777777888888888888888776655433
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI--YKD-AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~ 764 (899)
....+..+...|..+|.+|-|+..+++.+ .|+ +..|+.|..++...|++.+|...+++... +.|+. .+.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 45567778888999999999999999987 443 56899999999999999999999999998 77865 58999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVEL 841 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~ 841 (899)
.+...|.+++|..+|.... .+.|.. ...+.|...|-.+|++++|+.-+++. .++|... .+..++..|...|+.+.
T Consensus 363 i~~E~~~~e~A~~ly~~al--~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL--EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHhccchHHHHHHHHHH--hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999999988 456665 78889999999999999999999988 7888865 68999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 842 GEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 842 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
|++.+.+++..+|--+.++.+|+.+|...|+..+|+.-|+.....
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998753
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=5.3e-17 Score=187.25 Aligned_cols=419 Identities=10% Similarity=-0.015 Sum_probs=277.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 045600 453 IISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQN 529 (899)
Q Consensus 453 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 529 (899)
+...-..+.+.|+++.|...|...++. .|+...|..+...|.+.|++++|.+.++...+ .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344455566677777777777776654 34555666666777777777777777766554 2445666667777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHH
Q 045600 530 GAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCL 609 (899)
Q Consensus 530 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 609 (899)
|++++|+..|......+- .+......++..... ..+........+... ++...+..+.. |..........
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~--- 277 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRP--- 277 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcch---
Confidence 777777766665544211 111111111111111 112222222222211 11111111111 21111111111
Q ss_pred HHhhcCCCCC---hhhHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-CCCC-HhHHHHHHHHhcccCCHHHHHHHHHHH
Q 045600 610 LLFQMGDKRE---ISLWNAIISV---YVQTNKAKQAVAFFTELLGAG-LEPD-NVTVLSIISAGVLINSLNLTHSLMAFV 681 (899)
Q Consensus 610 ~~~~~~~~~~---~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~ 681 (899)
.-+......+ ...+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0011111101 1111111111 123468999999999999875 3343 345666667778899999999999998
Q ss_pred HHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hh
Q 045600 682 IRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EI 757 (899)
Q Consensus 682 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 757 (899)
.+.... ....|..+...+...|++++|...|++.. ..+...|..+...+...|++++|+..|++..+ +.|+ ..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHH
Confidence 877533 45577888889999999999999999886 34678899999999999999999999999998 6774 56
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HH-------HHH
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV-SI-------LES 828 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~ 828 (899)
.+..+..++.+.|++++|...+++.++.. +.+...|..++.++...|++++|.+.+++. ...|+. .. +..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788889999999999999999998532 234578889999999999999999999986 444431 11 111
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+..+...|++++|+..++++++++|++..++..++.+|.+.|++++|+++|++..+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22233446999999999999999999999999999999999999999999999987543
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.83 E-value=3.8e-16 Score=167.36 Aligned_cols=694 Identities=12% Similarity=0.030 Sum_probs=383.4
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCCCCC
Q 045600 133 HVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIPLAD 212 (899)
Q Consensus 133 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~ 212 (899)
.++..+...|+.|+..||..+|..||..|+++.|. +|..|.-...+....++++++......++.+.|. .|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667888999999999999999999999999888 9999887788888889999999888888887766 677
Q ss_pred ceeHHHHHHHHHcCCCchHHHHHHHH-HH-------HCCCCCCcchHHHHHHHhhccCChhhh---------hHHHHHHH
Q 045600 213 LVSCNTLMAGYSFNGLDQEALETFRR-IL-------TVGLKPNVSTFSSVIPVCTRLGHFCFG---------KSLHGFTI 275 (899)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~g~~~~a---------~~~~~~~~ 275 (899)
..+|+.|..+|.+.|+... ++..++ |. ..|+...+.-+-..++++- +-...+ +.++...+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 332222 22 2232222222222221111 111111 12223333
Q ss_pred HhCC-CCC-cchhhHH--HHhhh-cCCChhhHHHHHhhcCC-CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 045600 276 KSGY-LFD-DFLVPAL--ISMYA-GDLDLSTARKLFDSLLE-KNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDL 349 (899)
Q Consensus 276 ~~g~-~~~-~~~~~~l--i~~~~-~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 349 (899)
+.+. .|. ....... ++-.. -...+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|...+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3321 111 1111111 11111 12233333333333334 78899999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCC
Q 045600 350 VTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNR 429 (899)
Q Consensus 350 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 429 (899)
+-|..+|-+ .++...+..+..-|...|+.|+..|++..+..+.+.|....+.+....-.--....+..+..+...+.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 999888866 78888899999999999999999999988888887555322221111000001112333333311111
Q ss_pred C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCC---CcHhHHHHHHHHHHcCCCh
Q 045600 430 F-----WDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIV---SNLDVLNALLMFYSDGGQF 501 (899)
Q Consensus 430 ~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~ 501 (899)
+ ..-....+.+..-.|+......|... .-..+.|.-++.+++-..+...-.. .++..+..++
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l--------- 386 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL--------- 386 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH---------
Confidence 1 11122223333223433333223222 2223356666666666655442221 1222333333
Q ss_pred HHHHHHHhhcCCCCh-hhHHHHHHHHHh---cCCHHHHHHHHHHHHH----------------cCCCC-------CHHHH
Q 045600 502 SYAFTLFHRMSTRSS-VSWNTLISRCVQ---NGAVEEAVILLQRMQK----------------EGVEL-------DMVTL 554 (899)
Q Consensus 502 ~~A~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~g~~p-------~~~t~ 554 (899)
...|.+...+.. ..++ .-.+... .....+..++...... +...| =...-
T Consensus 387 ---rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~ 462 (1088)
T KOG4318|consen 387 ---RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIA 462 (1088)
T ss_pred ---HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHH
Confidence 334444443321 1121 1111111 1112222222221110 00111 11122
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCC------ChhhHHHHHH
Q 045600 555 ISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKR------EISLWNAIIS 628 (899)
Q Consensus 555 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~li~ 628 (899)
+.++..|++.-+..+++..-+.....-+. ..|..|++.++.....+.|. ...++...+ |..-+..+.+
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al---~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYAL---SFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHH---hchhhhcccchhhhcccHhHHHHHH
Confidence 34445555554444444333332222221 56788888888888888887 555555544 4445677788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CC-CHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCH
Q 045600 629 VYVQTNKAKQAVAFFTELLGAGL-EP-DNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNI 706 (899)
Q Consensus 629 ~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 706 (899)
...+.+....+..++.++.+.-. .| ...++-.++......|..+...+.++.+...|+..+ ..++....+.++.
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~ 612 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQ 612 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccch
Confidence 88888888888888888887422 22 134555666777778888888888888887776542 3344445566666
Q ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHH-
Q 045600 707 SMARKLFGSLI---YKDAFSWSVMINGYGL--YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFK- 780 (899)
Q Consensus 707 ~~A~~~~~~~~---~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~- 780 (899)
..|.++++... ++.+.....+.+.+.+ ..+++++..+-.... .|.+.|++.+|..+.+
T Consensus 613 s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq----------------~f~k~g~~~~a~di~et 676 (1088)
T KOG4318|consen 613 SAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQ----------------KFEKLGSCVDAGDITET 676 (1088)
T ss_pred hhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhH----------------HHHhcccccchhhcccc
Confidence 66666665443 2333222222222221 112222222111111 1233333333322221
Q ss_pred --------------------------HHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045600 781 --------------------------SMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACR 834 (899)
Q Consensus 781 --------------------------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 834 (899)
.+.+. .....|+..|.+.|+++.|..++.++...|++.+...++..+.
T Consensus 677 pG~r~r~~RDr~~de~e~~~lEll~elt~~l------g~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr 750 (1088)
T KOG4318|consen 677 PGVRCRNGRDRDTDEGEIVPLELLLELTHEL------GKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILR 750 (1088)
T ss_pred CcccccCCCccccccCccccHHHHHHHHhHh------HHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHH
Confidence 11111 1223367778888888888888888877788877777777766
Q ss_pred hhC---CHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 835 IHG---NVELGEIISGMLFEMDPENP---GSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 835 ~~g---~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
+.+ |+.++....+++.++.|..+ ..+...+....+-...+.|.+.+++..+.
T Consensus 751 ~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 751 RMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred hhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHc
Confidence 544 44555555666666654432 33333444444555555777778777765
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=6.2e-15 Score=160.52 Aligned_cols=547 Identities=11% Similarity=0.083 Sum_probs=384.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh--ccCCcccchHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHH
Q 045600 330 FFEAFEIFRQMIRAEMQPDLVTFVSIIPSCE--NYCSFQCGESLTACVIKNG--LGNQPSVLTALLSMYAKLGNIDSAKF 405 (899)
Q Consensus 330 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 405 (899)
.+.|...|....+.. |+... ..+..||. ..+++..+..+|..++... ..+|+.+. +-.++.++|+.+.|..
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHH
Confidence 477777777776643 33222 22344443 5668888888888866554 44555443 3467789999999999
Q ss_pred HHhcCCCCCcchHHHHHHHH---HH---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 045600 406 LFDQIPNRNLLCWNAMMSAY---VR---NRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRK 479 (899)
Q Consensus 406 ~~~~~~~~~~~~~~~li~~~---~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 479 (899)
.|.+..+-|...-++++... .. ...+..++.++...-... .-|++..+.|-..+.-.|+++.+..+...++..
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99998876654444443221 11 223455565555544332 235566777888888999999999999988876
Q ss_pred CCCC--cHhHHHHHHHHHHcCCChHHHHHHHhhcCC--CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 045600 480 GIVS--NLDVLNALLMFYSDGGQFSYAFTLFHRMST--RS--SVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELD-MV 552 (899)
Q Consensus 480 g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 552 (899)
.... -...|--+..+|-..|++++|...|-...+ ++ +..+-.+...+.+.|+.+.+...|+...+ ..|| ..
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~e 377 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNYE 377 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchHH
Confidence 5322 233466788899999999999999987765 22 44566788999999999999999999988 4454 56
Q ss_pred HHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHH-----HHhhcCCCCChhhH
Q 045600 553 TLISFLPNLNKNG----NIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCL-----LLFQMGDKREISLW 623 (899)
Q Consensus 553 t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-----~~~~~~~~~~~~~~ 623 (899)
|...+...|+..+ ..+.|..++....+.- ..|...|-.+..+|.....+.. ..++ .+...+....+...
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 6666666666664 4466666666665543 3466677777666655443333 2211 22334445788889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------hHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHH
Q 045600 624 NAIISVYVQTNKAKQAVAFFTELLGA---GLEPDN------VTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSN 694 (899)
Q Consensus 624 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 694 (899)
|.+...+...|++.+|...|+..... -..++. .+--.+....-..++.+.|.+.+..+.+..+. -+..|-
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHH
Confidence 99999999999999999999998765 223333 22223444455667999999999999887433 122222
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHc--
Q 045600 695 ALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSG-VRPNEITYLGVLSACSH-- 768 (899)
Q Consensus 695 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~~~~-- 768 (899)
-+..+....+...+|...++... ..++..|.-+...+.+...+..|.+-|+...+.- ..+|..+...|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 22222233467889999998876 4567778878888888889999988777766542 23677777777765532
Q ss_pred ----------cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhh
Q 045600 769 ----------AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIH 836 (899)
Q Consensus 769 ----------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 836 (899)
.+..++|+++|.++++.. +.|...-+-++-+++..|++.+|..+|... .......+|-.++..|...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 234678888888887533 334466677888999999999999999887 2334556799999999999
Q ss_pred CCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 837 GNVELGEIISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
|++-.|+++|+.+.+.. .+++.++..|+.++++.|++.+|.+++.......+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 99999999999999886 45788999999999999999999999988775443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=8.7e-18 Score=184.14 Aligned_cols=270 Identities=14% Similarity=0.122 Sum_probs=192.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 045600 621 SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPD---NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALM 697 (899)
Q Consensus 621 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 697 (899)
.++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+++.+.+... .+...+..++
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la 148 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 3444455555555555555555555555322111 12344555555566666666666666554421 2455666777
Q ss_pred HHhHhcCCHHHHHHHHHhcCC--CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHc
Q 045600 698 DSYVRCGNISMARKLFGSLIY--KD------AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSH 768 (899)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~ 768 (899)
..+.+.|++++|.+.++.+.. |+ ...|..+...+...|++++|++.++++.+ ..|+ ...+..+...+.+
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA--ADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHH
Confidence 777777777777777777652 21 12455677788888999999999999887 3464 4577778888999
Q ss_pred cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISG 847 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 847 (899)
.|++++|.++++++.+.+.......+..++.+|...|++++|.+.++++ ...|+...+..++..+.+.|+.++|...++
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999885442222466788899999999999999999987 556777777888899999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCCc
Q 045600 848 MLFEMDPENPGSYVMLHNIYAS---AGRWEDAYRVRSCMKRSRLKKVPGF 894 (899)
Q Consensus 848 ~~~~~~p~~~~~~~~l~~~y~~---~g~~~eA~~~~~~~~~~~~~~~~~~ 894 (899)
++++..|+++... .+...+.. .|+.++|+.++++|.+++++++|.+
T Consensus 307 ~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 307 EQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 9999999877544 44444443 5699999999999999999988874
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.3e-16 Score=178.69 Aligned_cols=331 Identities=10% Similarity=-0.018 Sum_probs=238.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 045600 519 WNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCN 598 (899)
Q Consensus 519 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (899)
...++..+.+.|+.++|..+++........ +......++.++...|++++|...++.+.+... .+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 344566677778888888887777764222 233444455566667788888888877776542 234556667777777
Q ss_pred cCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHH
Q 045600 599 CGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLM 678 (899)
Q Consensus 599 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 678 (899)
.|+.++|...++-.....+.+...+..+...+...|++++|...++.+......+ ...+.. +..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHH
Confidence 8888887744433334445566778888888888888888888888877654222 222222 23467788888888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHcC
Q 045600 679 AFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEA----ALELFKQMQLSG 751 (899)
Q Consensus 679 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g 751 (899)
+.+.+....++...+..+...+.+.|++++|.+.+++.. ..+...+..+...+...|++++ |+..+++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 887766544444455556677888899999999998876 3356778888888999998885 7888988887
Q ss_pred CCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHH-H
Q 045600 752 VRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSIL-E 827 (899)
Q Consensus 752 ~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~ 827 (899)
..|+ ...+..+...+...|++++|...+++..+. .|+ ...+..+..+|.+.|++++|.+.++++ ...|+...+ .
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 5674 457888888899999999999999998854 344 366777888999999999999998887 455665443 3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPENP 857 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 857 (899)
.+...+...|+.++|+..++++++.+|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 345677888999999999999999988864
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=2.1e-15 Score=176.99 Aligned_cols=393 Identities=8% Similarity=-0.002 Sum_probs=236.4
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 045600 453 IISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQN 529 (899)
Q Consensus 453 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 529 (899)
..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..++++... .+...+..+...+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3334444455555555555555544311 22333445555555555555555555555322 2334444455555555
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhH
Q 045600 530 GAVEEAVILLQRMQKEGVEL-DMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLC 608 (899)
Q Consensus 530 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 608 (899)
|+.++|+..+++..+. .| +.. +..+..++...|+.++|...++.+.+..
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------------------------- 146 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------------------------- 146 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------
Confidence 5555555555555442 22 222 4444444555555555555555555443
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------hHHHHHHHHh-----cccCCH---HHH
Q 045600 609 LLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDN------VTVLSIISAG-----VLINSL---NLT 674 (899)
Q Consensus 609 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~-----~~~~~~---~~a 674 (899)
+.+...+..+...+...+..++|+..++.... .|+. .....++... ...+++ +.|
T Consensus 147 --------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~A 215 (765)
T PRK10049 147 --------PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRA 215 (765)
T ss_pred --------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH
Confidence 22333333344444444445555544443322 1111 0011111111 111223 556
Q ss_pred HHHHHHHHHh-CCCCChh-H-HHH---HHHHhHhcCCHHHHHHHHHhcCCCC---HH-HHHHHHHHHHhCCCHHHHHHHH
Q 045600 675 HSLMAFVIRK-GLDKHVA-V-SNA---LMDSYVRCGNISMARKLFGSLIYKD---AF-SWSVMINGYGLYGDGEAALELF 744 (899)
Q Consensus 675 ~~~~~~~~~~-g~~~~~~-~-~~~---li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~ 744 (899)
...++.+.+. ...|+.. . ... .+..+...|++++|++.|+++...+ +. .-..+...|...|++++|++.|
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6677776654 3333221 1 111 1233456789999999999887321 11 2222567888999999999999
Q ss_pred HHHHHcCCCCC-----hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------ccCc---chHHHHHHHHhhcC
Q 045600 745 KQMQLSGVRPN-----EITYLGVLSACSHAGLVEQSKMVFKSMVEHGI-----------SQKM---EHYACMVDLLGRTG 805 (899)
Q Consensus 745 ~~m~~~g~~p~-----~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~g 805 (899)
+++.+. .|. ......+..++...|++++|.++++.+.+... .|+. ..+..++..+...|
T Consensus 296 ~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 296 TELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 998763 332 23456666688899999999999999885321 1221 24556788899999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 806 HLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 806 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
+.++|++.++++ ...| +...+..++..+...|+.+.|++.++++++++|+++..+..++.++...|++++|..+++++
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999987 3344 45678888899999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCc
Q 045600 884 KRSRLK 889 (899)
Q Consensus 884 ~~~~~~ 889 (899)
.+..++
T Consensus 454 l~~~Pd 459 (765)
T PRK10049 454 VAREPQ 459 (765)
T ss_pred HHhCCC
Confidence 875543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=5e-16 Score=178.17 Aligned_cols=356 Identities=10% Similarity=0.001 Sum_probs=280.0
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 045600 527 VQNGAVEEAVILLQRMQKEG--VELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTND 604 (899)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 604 (899)
.+..+|+.-.-+|..-.++- -.-+......++..+.+.|+.++|..+++........+....+ .+.......|+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHH
Confidence 44555555555554433210 1112334556788899999999999999999988766544444 44466667999999
Q ss_pred hhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh
Q 045600 605 GRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK 684 (899)
Q Consensus 605 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 684 (899)
|...++......+.+...|..+...+.+.|++++|...+++..... +.+...+..+..++...|+.++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9955555555556678889999999999999999999999999853 334566777888899999999999999988777
Q ss_pred CCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHH
Q 045600 685 GLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYK----DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITY 759 (899)
Q Consensus 685 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 759 (899)
...+....+. + ..+...|++++|.+.++.+... +...+..+...+...|++++|+..++++.+ ..| +...+
T Consensus 174 ~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~ 249 (656)
T PRK15174 174 VPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALR 249 (656)
T ss_pred CCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHH
Confidence 6554333333 3 3478899999999999987632 334455567788999999999999999998 456 45677
Q ss_pred HHHHHHHHccCCHHH----HHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 045600 760 LGVLSACSHAGLVEQ----SKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGA 832 (899)
Q Consensus 760 ~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 832 (899)
..+...+...|++++ |...++++.+. .|+ ...+..++..+.+.|++++|...+++. ...|+ ...+..+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888889999999986 89999999854 454 478889999999999999999999988 45555 4567788889
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 045600 833 CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 890 (899)
+...|++++|+..++++.+.+|+++..+..++.+|...|++++|++.|+++.+..++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999999999999998888888999999999999999999998876654
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=6.4e-15 Score=145.39 Aligned_cols=445 Identities=12% Similarity=0.064 Sum_probs=278.4
Q ss_pred ceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHH---HHHhCCCCCcchhhHH
Q 045600 213 LVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGF---TIKSGYLFDDFLVPAL 289 (899)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~---~~~~g~~~~~~~~~~l 289 (899)
+++=|.|+.. ...|..+++.-+|+.|+..|+..+...--.++...+-.+..+--..-+++ |.+.|- .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 4455666554 45788999999999999999888877766676655433332221222222 333332 122222
Q ss_pred HHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccch
Q 045600 290 ISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGE 369 (899)
Q Consensus 290 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 369 (899)
|.|++.+ ++-+...+...+|..||.|+|+-...+.|.+++.+......+.+..+||.+|.+-+-.. ++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 4455444 44455555668899999999999999999999999999999999999999998765433 48
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCC
Q 045600 370 SLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPD 449 (899)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (899)
.+..+|+...+.||..++|+++.+..+.|+++.|.+. |++++.+|++.|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcc
Confidence 8999999999999999999999999999998887744 4556666777777777
Q ss_pred HHHHHHHHHHhccCCChHH-HHHHHHHHHH----hCCCC----cHhHHHHHHHHHHcCCChHHHHHHHhhcCC-------
Q 045600 450 AVSIISVLSGCSKLDDVLL-GKSAHAFSLR----KGIVS----NLDVLNALLMFYSDGGQFSYAFTLFHRMST------- 513 (899)
Q Consensus 450 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 513 (899)
..+|..+|..+++.++... +..+...+.. ..++| +..-+..-++.+.+..+.+-|..+-.-...
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 7777666666666655432 3333333332 11222 222344445555566666666555443322
Q ss_pred -C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH
Q 045600 514 -R---SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFL 589 (899)
Q Consensus 514 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 589 (899)
+ ...-|..+....|+....+.-...|+.|.-.-+-|+..+...++++....+.++-..+++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 1 122355667777888888888888999888878888888888999999999999999999888887755444443
Q ss_pred HHHHHHHHhcCChhhhhhHHHHhhcCCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc
Q 045600 590 NALITMYCNCGSTNDGRLCLLLFQMGDKREIS---LWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGV 666 (899)
Q Consensus 590 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 666 (899)
.-++..+++.. ..|+.. -+.....-++ ..-.+....--.+|++.... ....+.+...+.
T Consensus 472 eeil~~L~~~k---------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 472 EEILMLLARDK---------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWP--ATSLNCIAILLL 533 (625)
T ss_pred HHHHHHHhcCC---------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHH
Confidence 33333333322 111111 0111111110 00111112223334443333 334445555566
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCChhHHH---HHHHHhHhcCCHHHHHHHHHhcCCC
Q 045600 667 LINSLNLTHSLMAFVIRKG-LDKHVAVSN---ALMDSYVRCGNISMARKLFGSLIYK 719 (899)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~g-~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~ 719 (899)
+.|+.++|.+++..+.+.+ --|.....| -+++.-.+......|..+++-|..-
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 7777777777777775552 223333344 3444455566677777777766533
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=2.3e-16 Score=172.94 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC
Q 045600 625 AIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCG 704 (899)
Q Consensus 625 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 704 (899)
.+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+.......++.++..|.+.|
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 34444555555555555555555432 12233444444555555555555555555554433322344555556666666
Q ss_pred CHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc---cCCHHHHHHHH
Q 045600 705 NISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSH---AGLVEQSKMVF 779 (899)
Q Consensus 705 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~---~g~~~~A~~~~ 779 (899)
++++|.+.++++. .|+...+..++..+.+.|++++|.++++++.+ ..|+..++..++..+.. .|+.+++..++
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 6666666666554 34444445556666666666666666666555 35665566555554442 34566666666
Q ss_pred HHHHHcCCccCcc
Q 045600 780 KSMVEHGISQKME 792 (899)
Q Consensus 780 ~~m~~~~~~p~~~ 792 (899)
++|.+.++.|++.
T Consensus 342 ~~~~~~~~~~~p~ 354 (389)
T PRK11788 342 RDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhCCCC
Confidence 6666555555543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.2e-14 Score=141.64 Aligned_cols=445 Identities=12% Similarity=0.100 Sum_probs=296.2
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh--ccCCcccchH-HHHHHHHhCCCCchhHHHH
Q 045600 313 NASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCE--NYCSFQCGES-LTACVIKNGLGNQPSVLTA 389 (899)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~ 389 (899)
.+++-|.|+. ....|..+++.-+|+.|++.|+..+...-..++...+ +..+.--+++ -|-.|.+.|-.. ..+
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s--- 189 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS--- 189 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc---
Confidence 3455666665 4567889999999999999998877776666665533 3333332221 122222222211 111
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHH
Q 045600 390 LLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLG 469 (899)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 469 (899)
.|.|.+.+ ++-+...+...+|..||.|+|+--..+.|.+++++-.....+.+..+|+.+|.+-+-. .+
T Consensus 190 -----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 190 -----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred -----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 13444443 4444444566799999999999999999999999999988899999999999876543 34
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045600 470 KSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVEL 549 (899)
Q Consensus 470 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 549 (899)
+.+..+|+.....||..++|+++...++.|+++.|.+. |.+++.+|++-|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCc
Confidence 78889999999999999999999988888888877654 577888899999999
Q ss_pred CHHHHHHHHHHHhcCCChHH-HHHHHHHHHH----hCCCC----ChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCC--
Q 045600 550 DMVTLISFLPNLNKNGNIKQ-GMVIHGYAIK----TGCVA----DVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKR-- 618 (899)
Q Consensus 550 ~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 618 (899)
...+|..+|...++.++..+ +..+..++.. ..++| |...+...++.+.+..+.+-|..+..+++.+...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 99999888888888777633 4444444432 22332 4556677777888888888888777777766542
Q ss_pred ------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhH
Q 045600 619 ------EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAV 692 (899)
Q Consensus 619 ------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 692 (899)
...-|..+....|+....+.-+..|+.|.-.-+.|+..+...+++|....+.++-...++..++..|.......
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 23346677788889999999999999999998899999999999999999999999999999998886544443
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLIYKDAF---SWSVMINGYGLYGDGEAA-LELFKQMQLSGVRPNEITYLGVLSACSH 768 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 768 (899)
-.-+...+++.. +.|+.. -+.....-|+. ++.++ ...-.+|.+..+. ....+..+-.+.+
T Consensus 471 ~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 471 REEILMLLARDK------------LHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHH
Confidence 333333333322 012211 11111111111 22222 2223444443333 3344445555667
Q ss_pred cCCHHHHHHHHHHHHHcCC-ccCcchHHH---HHHHHhhcCChHHHHHHHHhC
Q 045600 769 AGLVEQSKMVFKSMVEHGI-SQKMEHYAC---MVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~ 817 (899)
.|+.++|.+++..+...+. .|.....+. +.+.-.+......|...++-|
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777777777753332 233344443 344445566666777776665
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=3e-13 Score=146.72 Aligned_cols=637 Identities=13% Similarity=0.101 Sum_probs=341.3
Q ss_pred CChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccC---CCCCceeHHHHHHHHHcCCCchHHHHHHH
Q 045600 161 SDLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQI---PLADLVSCNTLMAGYSFNGLDQEALETFR 237 (899)
Q Consensus 161 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (899)
|+++.|..++.++++.. +.+...|-+|...|-..|+.+++...+--. .+.|..-|-.+-.-..+.|+++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 89999999999998876 456778888999999999999988776543 34566788888888889999999999999
Q ss_pred HHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHH----HHhhhcCCChhhHHHHHhhcCC--
Q 045600 238 RILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPAL----ISMYAGDLDLSTARKLFDSLLE-- 311 (899)
Q Consensus 238 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~f~~~~~-- 311 (899)
+..+... ++...+--=...|-+.|+...|..-+.++.+...+.|..-.-.+ +..|...++-+.|.+.++....
T Consensus 232 rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 9887642 23333334455677889999999888888887653333333333 4456667777888888887754
Q ss_pred C---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHH--------------------------HHHHhhcc
Q 045600 312 K---NASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVS--------------------------IIPSCENY 362 (899)
Q Consensus 312 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--------------------------ll~a~~~~ 362 (899)
. +...+|.++..|.+...++.|......+......+|..-+.+ +.-.+...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2 345688999999999999999999988877444444333210 01111122
Q ss_pred CCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHH
Q 045600 363 CSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQ 442 (899)
Q Consensus 363 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (899)
...+....+...+....+.+ .-++..|.-+..+|...|++.+|+.+|..+.
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~-----------------------------~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWV-----------------------------SDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccchHHHHHHHHHHhcCCh-----------------------------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 22333333333333333111 1123344445555555555555555555555
Q ss_pred HcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChh-----
Q 045600 443 FAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSV----- 517 (899)
Q Consensus 443 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----- 517 (899)
.....-+...|-.+-.++-..|..++|.+.+...+... +.+..+--.|...+-+.|+.++|.+.+..+..||..
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 44333333444444444445555555555555444432 223444555666677788888888888877665522
Q ss_pred -------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 045600 518 -------SWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLN 590 (899)
Q Consensus 518 -------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 590 (899)
.--.....+.+.|+.++=+.....|..... ....+ + .+...+.. ......+.........
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~~--f---~~~~k~r~--~~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRYI--F---PRNKKKRR--RAIAGTTSKRYSELLK 587 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHh--c---chHHHHHH--HhhccccccccchhHH
Confidence 111122333444444443333333322100 00000 0 00000000 0000000111112222
Q ss_pred HHHHHHHhcCChhhhhhHHHHhhcC------C--CCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045600 591 ALITMYCNCGSTNDGRLCLLLFQMG------D--KREI----SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTV 658 (899)
Q Consensus 591 ~l~~~~~~~g~~~~a~~~~~~~~~~------~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 658 (899)
..+.+-.+.++....+ .-.... . .-+. ..+.-++..+++.+++.+|+.+...+......
T Consensus 588 ~~~~~~~k~~~~~~~~---~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f------ 658 (895)
T KOG2076|consen 588 QIIRAREKATDDNVME---KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF------ 658 (895)
T ss_pred HHHHHHhccCchHHhh---hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh------
Confidence 2333333333222111 000000 0 0011 11223344444455555555544444443211
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhCCCCCh---hHHHHHHHHhHhcCCHHHHHHHHHhcCCC-----C---HHHHHHH
Q 045600 659 LSIISAGVLINSLNLTHSLMAFVIRKGLDKHV---AVSNALMDSYVRCGNISMARKLFGSLIYK-----D---AFSWSVM 727 (899)
Q Consensus 659 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~l 727 (899)
..++. ..-...+.+....+++..|.+.++.|... + ...||..
T Consensus 659 ---------------------------~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 659 ---------------------------FQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred ---------------------------hccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 11111 11233344445556666666666655422 2 2355554
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH--HHHHccCCHHHHHHHHHHHHHcCCccCcchHHHH-HHHHh--
Q 045600 728 INGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVL--SACSHAGLVEQSKMVFKSMVEHGISQKMEHYACM-VDLLG-- 802 (899)
Q Consensus 728 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~-- 802 (899)
.+...+.++-.--...+..... ..|+......++ .-+...+.+..|++++-+... ..|+....+.+ +-++.
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHH
Confidence 4555544443333333333222 233332222222 234566777777776666553 34554333322 22221
Q ss_pred --------hcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------------ch
Q 045600 803 --------RTGHLNEAFIFVKKL----PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPEN------------PG 858 (899)
Q Consensus 803 --------~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------------~~ 858 (899)
|.-..-+++.++++. ..........+++++|...|=...|+.+|+++++..|.+ ..
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrke 867 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKE 867 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHH
Confidence 111233455555544 122245678889999999999999999999999997643 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
+-++|.-+|.+.|+..-|.+++++
T Consensus 868 AA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 868 AAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHhhhhhhhccCCcHHHHHHHHHh
Confidence 667888899999999999998875
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.1e-14 Score=171.17 Aligned_cols=411 Identities=11% Similarity=0.054 Sum_probs=291.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHc
Q 045600 418 WNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSD 497 (899)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 497 (899)
-.-.+......|+.++|++++.+..... ..+...+..+...+.+.|++++|..+++..++.. +.+......+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445667788999999999999998622 3445568888889999999999999999988763 3345667788889999
Q ss_pred CCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHH
Q 045600 498 GGQFSYAFTLFHRMST--R-SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVI 573 (899)
Q Consensus 498 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 573 (899)
.|++++|...+++... | +.. +..+...+...|+.++|+..++++.+ ..|+ ...+..+..++...+..+.|...
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 9999999999999865 3 455 88888999999999999999999998 4564 44555667777788888888887
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCH---HHHHHHHHHHHHC-
Q 045600 574 HGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKA---KQAVAFFTELLGA- 649 (899)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~- 649 (899)
++.+.. .|+.. .. +. ...+. ..... .+.......+++ ++|++.++.+.+.
T Consensus 173 l~~~~~---~p~~~--~~-l~-------~~~~~---~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 173 IDDANL---TPAEK--RD-LE-------ADAAA---ELVRL----------SFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred HHhCCC---CHHHH--HH-HH-------HHHHH---HHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 765543 22210 00 00 00000 00000 000001112223 6677777777754
Q ss_pred CCCCCHh-HHH----HHHHHhcccCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CC-
Q 045600 650 GLEPDNV-TVL----SIISAGVLINSLNLTHSLMAFVIRKGLD-KHVAVSNALMDSYVRCGNISMARKLFGSLIY--KD- 720 (899)
Q Consensus 650 g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~- 720 (899)
...|+.. .+. ..+.++...|+.++|...|+.+.+.+.. |+. ....+...|...|++++|++.|+++.. |.
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 2233221 111 1133445668888888888888877532 332 222256788889999999999988752 21
Q ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------CCCCh---hHHHHHHHHHHccCCHHHHHHHHHHH
Q 045600 721 ----AFSWSVMINGYGLYGDGEAALELFKQMQLSG-----------VRPNE---ITYLGVLSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 721 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~l~~~~~~~g~~~~A~~~~~~m 782 (899)
...+..+..++...|++++|++.++++.+.. -.|+. ..+..+...+...|++++|.++++++
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345666778889999999999999988742 12332 24456667888999999999999999
Q ss_pred HHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 045600 783 VEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSY 860 (899)
Q Consensus 783 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 860 (899)
.... +.+...+..++..+...|+.++|++.+++. ...|+ ...+...+..+...|+++.|+..++++++..|+++.+.
T Consensus 386 l~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 386 AYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 8542 333578888999999999999999999988 56676 45566777788899999999999999999999998665
Q ss_pred H
Q 045600 861 V 861 (899)
Q Consensus 861 ~ 861 (899)
.
T Consensus 465 ~ 465 (765)
T PRK10049 465 R 465 (765)
T ss_pred H
Confidence 4
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=4.8e-13 Score=145.13 Aligned_cols=604 Identities=12% Similarity=0.078 Sum_probs=343.4
Q ss_pred CChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhc---CCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 045600 262 GHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSL---LEKNASVWNAMISAYTQSKKFFEAFEIFR 338 (899)
Q Consensus 262 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 338 (899)
|+.+.|.+++.++++.. +.....|..|...|-..|+.+++...+-.. ...|..-|..+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555543 233344555555555555555555443322 22344455555555555555555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHH----HHHHHHHhcCChHHHHHHHhcCCC--
Q 045600 339 QMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLT----ALLSMYAKLGNIDSAKFLFDQIPN-- 412 (899)
Q Consensus 339 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~-- 412 (899)
+..+... ++...+.-=...|-+.|+...|..-+..+.....+.|..-.. ..+..+...++-+.|.+.++....
T Consensus 232 rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 5554421 122222223334445555555555555555443322322222 234556666666777777766654
Q ss_pred C---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHHhccC
Q 045600 413 R---NLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSI--------------------------ISVLSGCSKL 463 (899)
Q Consensus 413 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ll~~~~~~ 463 (899)
. +...+|.++..+.+...++.|......+......+|..-+ ..+.-++.+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2 3446788888888888888888888877762222222211 1233344556
Q ss_pred CChHHHHHHHHHHHHhC--CCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHH
Q 045600 464 DDVLLGKSAHAFSLRKG--IVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST----RSSVSWNTLISRCVQNGAVEEAVI 537 (899)
Q Consensus 464 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 537 (899)
...+....+.....+.. ...+...|.-+.++|...|++..|..+|..+.. .+...|-.+..+|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 66666666666666666 344566778888888888888888888888765 356778888888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHhcCChhhhhhH
Q 045600 538 LLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVIHGYAI--------KTGCVADVTFLNALITMYCNCGSTNDGRLC 608 (899)
Q Consensus 538 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 608 (899)
.|++... ..|+ ...-..|-..+.+.|+.++|.+.++.+. ..+..|+........+.|...|+.++=.
T Consensus 471 ~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-- 546 (895)
T KOG2076|consen 471 FYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-- 546 (895)
T ss_pred HHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH--
Confidence 8888877 4554 3344455566677888888888887743 2234455555555555666666555421
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH-----HHHH-C--CCCCCHhHHHHHHHHhcccCCHHHHHHHHHH
Q 045600 609 LLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFT-----ELLG-A--GLEPDNVTVLSIISAGVLINSLNLTHSLMAF 680 (899)
Q Consensus 609 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-----~m~~-~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 680 (899)
... ..|+.-+.+.. -+|. ++.. . +..-...+.-.++.+-.+.++......-...
T Consensus 547 -~t~-----------~~Lv~~~~~~~------~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d 608 (895)
T KOG2076|consen 547 -NTA-----------STLVDDFLKKR------YIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD 608 (895)
T ss_pred -HHH-----------HHHHHHHHHHH------HhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence 110 11111111000 0000 0000 0 1122222333333333333332222211111
Q ss_pred ------HHHhCCCCCh--hHHHHHHHHhHhcCCHHHHHHHHHhcCCC-----CHH----HHHHHHHHHHhCCCHHHHHHH
Q 045600 681 ------VIRKGLDKHV--AVSNALMDSYVRCGNISMARKLFGSLIYK-----DAF----SWSVMINGYGLYGDGEAALEL 743 (899)
Q Consensus 681 ------~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~li~~~~~~g~~~~A~~~ 743 (899)
....|+..+. ..+.-++..+++.+++++|+.+...+..- +.. .-...+.+.+..+++..|...
T Consensus 609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1112332221 34566788999999999999999887622 221 234566777889999999999
Q ss_pred HHHHHHc-C--CCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 045600 744 FKQMQLS-G--VRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P 818 (899)
Q Consensus 744 ~~~m~~~-g--~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 818 (899)
++.|... + ..|.. ..|+...+.+.+.++-.--..++..+......-+...+...+..+...+.+..|+..+-+. .
T Consensus 689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 9999874 1 13433 3455555555555544333333333332121111222223345566788899998877665 5
Q ss_pred CCCCHHHHHHHHHH------H-----HhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 819 CKPSVSILESLLGA------C-----RIHGNVELGEIISGMLFEMDPE--NPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 819 ~~p~~~~~~~l~~~------~-----~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..|+....+.+++. + .+|-.+-.+..++++..++... -..+.+++|.+|...|=..=|.++|+++.+
T Consensus 769 ~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 769 QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 55664443333321 1 1222356678888888888755 788999999999999999999999999987
Q ss_pred CCCc
Q 045600 886 SRLK 889 (899)
Q Consensus 886 ~~~~ 889 (899)
-.++
T Consensus 849 ~~p~ 852 (895)
T KOG2076|consen 849 VSPK 852 (895)
T ss_pred CCcc
Confidence 5443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=6.5e-14 Score=160.66 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=86.5
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHhccCCC
Q 045600 392 SMYAKLGNIDSAKFLFDQIPNRNLL---CWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVS---IISVLSGCSKLDD 465 (899)
Q Consensus 392 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~ 465 (899)
-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+... ...+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3455667777777776666542221 12256666666677777766666665 232222 2222334455566
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045600 466 VLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTR--SSVSWNTLISRCVQNGAVEEAVILLQRMQ 543 (899)
Q Consensus 466 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 543 (899)
++.|.++++.+++..... ..++..++..|...++.++|++.++++... +...+..++..+...++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 666666666665543222 344445555555556666666665555542 22222222222222333434555555555
Q ss_pred HcCCCC-CHHHHHHHHHHHhcCCChHHHHHH
Q 045600 544 KEGVEL-DMVTLISFLPNLNKNGNIKQGMVI 573 (899)
Q Consensus 544 ~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 573 (899)
+. .| +...+..+..++.+.|-...|.++
T Consensus 197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 197 RL--APTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 52 33 233444444555555555444433
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.76 E-value=1.4e-14 Score=155.56 Aligned_cols=629 Identities=13% Similarity=0.047 Sum_probs=329.2
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCC
Q 045600 234 ETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKN 313 (899)
Q Consensus 234 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 313 (899)
.++-.|...|+.|+.+||.++|..||..|+.+.|- ++..|.-...+....+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45567778899999999999999999999999888 8888888888888888999998888888888776 778
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHH-HH-------HCCCCCCHhhHHHHHHHhhccC-C------cccchHHHHHHHHh
Q 045600 314 ASVWNAMISAYTQSKKFFEAFEIFRQ-MI-------RAEMQPDLVTFVSIIPSCENYC-S------FQCGESLTACVIKN 378 (899)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~ 378 (899)
..+|..|..+|.+.|+... ++..++ |. ..|+.--..-+...++.|...- + ..--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988654 333332 21 1233222222222222221110 0 01112233333333
Q ss_pred C--CCCchhHHHH--HHHHHHhc-CChHHHHHHHhcCCC-CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHH
Q 045600 379 G--LGNQPSVLTA--LLSMYAKL-GNIDSAKFLFDQIPN-RNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVS 452 (899)
Q Consensus 379 g--~~~~~~~~~~--li~~~~~~-g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 452 (899)
+ .+........ .++-.... ..+++-........+ ++..+|.+++.+-.-+|+.+.|..++.+|++.|+..+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 3 1111111011 12222221 233444444444444 7889999999999999999999999999999999999888
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCH
Q 045600 453 IISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAV 532 (899)
Q Consensus 453 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 532 (899)
|-.+|-+ .++...++.+..-|.+.|+.|+..++..-+-.+.+.|....+....+.-..-....+..+..+...+.+.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8777766 7888889999999999999999999987776666655533222221100001122233333321111111
Q ss_pred H-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhcCChhh
Q 045600 533 E-----EAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGC--VA-DVTFLNALITMYCNCGSTND 604 (899)
Q Consensus 533 ~-----~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~ 604 (899)
+ -....+.+..-.|+......|. +..-....|.-+...++-..+..-.. .+ ++..+..++.-|.+.-+..-
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 1 1122222222234433333332 22223335555555555555543211 11 22333333333332111100
Q ss_pred hhhHHHHhhcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-------CCHhHHHHHHHHhcccCCHH
Q 045600 605 GRLCLLLFQMGDKREISLW-NAIISVYVQTNKAKQAVAFFTELLG----AGLE-------PDNVTVLSIISAGVLINSLN 672 (899)
Q Consensus 605 a~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-------p~~~t~~~ll~a~~~~~~~~ 672 (899)
........ ++...+..++ ...+.-+...-+...++.-+..+.. +-.. |-...-+.++..|+..-+..
T Consensus 398 ~~~i~~~~-qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 398 CSRIYYAG-QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHH-HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000000 0000000000011111111110000 0000 01112233444444444444
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHH
Q 045600 673 LTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDA------FSWSVMINGYGLYGDGEAALELFKQ 746 (899)
Q Consensus 673 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~ 746 (899)
+++..-+.....-+. ..|..|++.++...+.+.|..+.++...++. .-+..+.+.+.+.+...++.+++++
T Consensus 477 K~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 444333333222221 4567777777777777777777777765533 3466677777777777777777777
Q ss_pred HHHcC-CCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCC
Q 045600 747 MQLSG-VRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPS 822 (899)
Q Consensus 747 m~~~g-~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~ 822 (899)
+.+.- ..|+ ..++-.++......|+.+...++.+-+...|+.-+ .-++....+.++...|.+..+.. +.+|.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~ 629 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPY 629 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCC
Confidence 76632 2232 23455566666677777777777777665554432 22334445555555555554433 34444
Q ss_pred HHHHHHHHHHHH---------------------hhCCHHHHHHHHH-----------------------HHHhcCCCCch
Q 045600 823 VSILESLLGACR---------------------IHGNVELGEIISG-----------------------MLFEMDPENPG 858 (899)
Q Consensus 823 ~~~~~~l~~~~~---------------------~~g~~~~a~~~~~-----------------------~~~~~~p~~~~ 858 (899)
+.....+.+... +.|+...|..+.+ ...++. ..-.
T Consensus 630 P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt-~~lg 708 (1088)
T KOG4318|consen 630 PKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELT-HELG 708 (1088)
T ss_pred hHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHH-hHhH
Confidence 444444433333 2222222211111 000000 1123
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
....|...|...|+++.|..+|.++.
T Consensus 709 ~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 709 KNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred HHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 45668889999999999999999986
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=4.2e-14 Score=163.23 Aligned_cols=233 Identities=12% Similarity=0.022 Sum_probs=165.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 045600 621 SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPD-NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDS 699 (899)
Q Consensus 621 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 699 (899)
..|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++...+.... +...+..+...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34555555666666777777777766654 243 345555666666677777777777776665432 45677778888
Q ss_pred hHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHH
Q 045600 700 YVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQS 775 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A 775 (899)
+...|++++|.+.|++.. .| +...+..+...+.+.|++++|+..+++..+ ..|+ ...+..+...+...|++++|
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHH
Confidence 888888999988888876 33 566777888888889999999999998887 5664 56788888888899999999
Q ss_pred HHHHHHHHHcCCccCcc------hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHH
Q 045600 776 KMVFKSMVEHGISQKME------HYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEIISG 847 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 847 (899)
...|++.++.....+.. .+......+...|++++|.+.+++. ...|+.. .+..++..+...|++++|+..++
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999888443211111 1112222334468999999998886 5556544 57788888999999999999999
Q ss_pred HHHhcCCCCch
Q 045600 848 MLFEMDPENPG 858 (899)
Q Consensus 848 ~~~~~~p~~~~ 858 (899)
++.++.+....
T Consensus 567 ~A~~l~~~~~e 577 (615)
T TIGR00990 567 RAAELARTEGE 577 (615)
T ss_pred HHHHHhccHHH
Confidence 99988776444
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2.6e-10 Score=119.33 Aligned_cols=463 Identities=13% Similarity=0.107 Sum_probs=289.0
Q ss_pred HHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHH----HHHcCCCCCHHHHHHHHHHhccCCC
Q 045600 393 MYAKLGNIDSAKFLFDQIPN---RNLLCWNAMMSAYVRNRFWDASLAVFRQ----MQFAGLNPDAVSIISVLSGCSKLDD 465 (899)
Q Consensus 393 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~ 465 (899)
+|.+..-++.|.++++...+ .+...|.+-...=-.+|+.+...++..+ +...|+..+...|..=..+|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34444445555555444332 3444454444444445555554444332 3334555555555444444544454
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045600 466 VLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKE 545 (899)
Q Consensus 466 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 545 (899)
+-.+..+....+..|++.. .--.+|+.-...|.+.+.++-|..+|....+-
T Consensus 495 v~TcQAIi~avigigvEee-----------------------------d~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEE-----------------------------DRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred hhhHHHHHHHHHhhccccc-----------------------------hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 4444444444444443221 12234555555555555555555555555442
Q ss_pred CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHH
Q 045600 546 GVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNA 625 (899)
Q Consensus 546 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 625 (899)
.+-+.+.|......--..|..+....++.++..+-. .....+-....-+-..|++..|+.++...-...+.+...|-+
T Consensus 546 -fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 546 -FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred -ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 222344444444444455555555555555554422 223334444445555666666654442222222336666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN 705 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 705 (899)
-+........+++|..+|.+.... .|+...|.--+...--.++.++|.+++++..+.-.. -...|-.+.+.+-+.++
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHH
Confidence 666667777777777777776663 455555554444445567777777777666554211 33456667778888888
Q ss_pred HHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHH
Q 045600 706 ISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 706 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~ 781 (899)
++.|.+.|..-. .| .+..|-.|...--+.|.+.+|..++++..-. .| |...|...|+.=.+.|..+.|..++.+
T Consensus 701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888988887766 33 4567888888888888899999999888763 45 667888888888899999999988888
Q ss_pred HHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 045600 782 MVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 782 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 861 (899)
.++ .++.+...|..-|...-+.++-......+++. .-|+..+.++...+....++++|..-|+++++.+|++..++.
T Consensus 779 ALQ-ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 779 ALQ-ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HHH-hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 875 34445577888888888888877777777776 445555667777778888899999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCCccc
Q 045600 862 MLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSL 896 (899)
Q Consensus 862 ~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 896 (899)
.+-..+...|.-++=.+++.+-....+.. |..|
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~EP~h--G~~W 888 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETAEPTH--GELW 888 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCC--CcHH
Confidence 88888999998888888888877655543 4444
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=1.2e-12 Score=150.26 Aligned_cols=452 Identities=11% Similarity=0.039 Sum_probs=236.4
Q ss_pred hccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchH-HHH--HHHHHHCCChhHHHH
Q 045600 360 ENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCW-NAM--MSAYVRNRFWDASLA 436 (899)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~ 436 (899)
.+.|++..|...+..+.+......+.++ .++..+...|+.++|...+++...|+...+ ..+ ...+...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555556666666555554433222333 555555555666666666666554432222 222 234445566666666
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC--
Q 045600 437 VFRQMQFAGLNPD-AVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST-- 513 (899)
Q Consensus 437 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 513 (899)
+|+++.+.. |+ ...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|.+.++++..
T Consensus 124 ly~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 124 LWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 666665542 32 233334445555556666666665555543 22233333334444334444446666655543
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 045600 514 R-SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNAL 592 (899)
Q Consensus 514 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 592 (899)
| +...+..++.++.+.|-...|.++.++-... +.+...-. + . .+. ..+.++.+..++..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l-~-------~~~----~a~~vr~a~~~~~~----- 259 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L-E-------RDA----AAEQVRMAVLPTRS----- 259 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H-H-------HHH----HHHHHhhccccccc-----
Confidence 2 3444555555566666655555544432110 11110000 0 0 000 00000000000000
Q ss_pred HHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH-h----HHHHHHHHhc
Q 045600 593 ITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGA-GLEPDN-V----TVLSIISAGV 666 (899)
Q Consensus 593 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-~----t~~~ll~a~~ 666 (899)
...++. -.+.|+.-++.+... +-.|.. . ...-.+.++.
T Consensus 260 -----~~~r~~-------------------------------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 260 -----ETERFD-------------------------------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred -----chhhHH-------------------------------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 000000 122333333333321 111211 1 1112233445
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCCH
Q 045600 667 LINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYK---------DAFSWSVMINGYGLYGDG 737 (899)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~ 737 (899)
..++..++.+.++.+...+.+....+-..+.++|...+++++|+.++..+..+ +......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 55555555555555555554444445566666677777777777777665421 222245667777777777
Q ss_pred HHHHHHHHHHHHcCC-----------CCC--hh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhh
Q 045600 738 EAALELFKQMQLSGV-----------RPN--EI-TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGR 803 (899)
Q Consensus 738 ~~A~~~~~~m~~~g~-----------~p~--~~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 803 (899)
++|..+++++.+..- .|| -. .+..++..+...|++.+|.+.++++.... +-|......+.+.+..
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 777777777776211 132 22 34445557788889999999999887432 3355778888888899
Q ss_pred cCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChH
Q 045600 804 TGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWE 874 (899)
Q Consensus 804 ~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 874 (899)
.|+..+|.+.++.. ...|+.. .....+..+...|+++.|..+.+.+.+..|+++.+-. |...+.-...++
T Consensus 463 Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~-l~r~~~~h~~~~ 534 (822)
T PRK14574 463 RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE-LDRQRKVHNMYE 534 (822)
T ss_pred cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH-HHHHHHHhhhHH
Confidence 99999999988776 4566544 4556777778889999999999999999998886553 333333333333
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.2e-10 Score=121.77 Aligned_cols=421 Identities=12% Similarity=0.070 Sum_probs=314.7
Q ss_pred HhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHH
Q 045600 459 GCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEA 535 (899)
Q Consensus 459 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 535 (899)
+.....+.+.|+-++....+. ++.+...|. +|++..-++.|.+++++..+ .+..+|-+-...=-.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 333444445555555555543 222333333 34555667777777776655 3667777766666778888887
Q ss_pred HHHHHH----HHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhhhhHH
Q 045600 536 VILLQR----MQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVAD--VTFLNALITMYCNCGSTNDGRLCL 609 (899)
Q Consensus 536 ~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 609 (899)
..++.+ +...|+..+...|..=..+|-..|.+-.+..+....+.-|+... ..++..-.+.+.+.+.++-|+.++
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 777665 45578888888888888888888888888888888887776532 456777777888888888888666
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCC
Q 045600 610 LLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKH 689 (899)
Q Consensus 610 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 689 (899)
...-+....+...|......--.+|..++...+|++.... ++-....+.......-..|++..|..++....+.... +
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-s 617 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-S 617 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-c
Confidence 6555666667788888888888888888888899888875 2333344444445566679999999999988888665 7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHH
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLGVLSAC 766 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~ 766 (899)
...+-+-+........+++|..+|.+.. .+....|..-+....-.++.++|++++++..+ ..|+.. .|..+.+.+
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHH
Confidence 7788888888888999999999998876 66777888888888888899999999988887 678765 677777788
Q ss_pred HccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHH
Q 045600 767 SHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 767 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
-+.++.+.|...|..=. ..-|+. ..|..+...-.+.|+.-.|..++++. +.+.+...|...++.-.+.|+.+.|.
T Consensus 696 e~~~~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 88899999988887643 223443 77777888888888999999999887 44445667888888888999999888
Q ss_pred HHHHHHHhcCCC------------------------------CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 045600 844 IISGMLFEMDPE------------------------------NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 844 ~~~~~~~~~~p~------------------------------~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 890 (899)
.+.-++++..|. ||..+...+..+....++++|.++|.+....+++.
T Consensus 774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 888887776544 45577788888999999999999999998766544
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=4.6e-13 Score=133.07 Aligned_cols=477 Identities=14% Similarity=0.100 Sum_probs=287.5
Q ss_pred ccCCcccchHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhcCCC--C------CcchHHHHHHHHHHCCCh
Q 045600 361 NYCSFQCGESLTACVIKNGLGNQPSVL-TALLSMYAKLGNIDSAKFLFDQIPN--R------NLLCWNAMMSAYVRNRFW 431 (899)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~ 431 (899)
......+|...++.+++..+-|+.... ..+-+.+.+...+..|++.++.... | .+...+.+--.+.+.|.+
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 333445555556666666655554432 2355667788888888887765432 1 123455555567889999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhc
Q 045600 432 DASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRM 511 (899)
Q Consensus 432 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (899)
+.|+..|+...+. .|+..+-..++-++...|+.+..++.|..++.....+|..-| .+..+
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~~d----------- 352 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKEKD----------- 352 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCCcC-----------
Confidence 9999999887765 588877666666666678888888888888875444443211 00000
Q ss_pred CCCChhhHHH-----HHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 045600 512 STRSSVSWNT-----LISRCVQNG--AVEEAVILLQRMQKEGVELDMV-TLISFLPNLNKNGNIKQGMVIHGYAIKTGCV 583 (899)
Q Consensus 512 ~~~~~~~~~~-----li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 583 (899)
.|+....|. ++.-.-+.. +.++++-.--+++..-+.|+-. -|...+...-.....+.|.
T Consensus 353 -dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~------------ 419 (840)
T KOG2003|consen 353 -DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI------------ 419 (840)
T ss_pred -CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh------------
Confidence 011111111 111111111 1122222222222222233211 1111111111111111111
Q ss_pred CChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChh--hHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 045600 584 ADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREIS--LWNAIISVYVQT-NKAKQAVAFFTELLGAGLEPDNVTVLS 660 (899)
Q Consensus 584 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ 660 (899)
+.. -.-...|.+.|+++.|..++++|+....+... .-|.-+--|.+. .++..|.+.-+...... .-+......
T Consensus 420 -dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~n 495 (840)
T KOG2003|consen 420 -DLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTN 495 (840)
T ss_pred -hhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhc
Confidence 000 11122355667777776555666554443221 111111122222 23555655555444321 112222221
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCH
Q 045600 661 IISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDG 737 (899)
Q Consensus 661 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 737 (899)
--......|+++.|.+.+++.....-.-....||. .-.+-..|++++|++.|-++. ..+......+.+.|-...+.
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 12223456778888887777766543322233332 234567899999999998765 56777888889999999999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHh
Q 045600 738 EAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 738 ~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
.+|++++-+... +.| |+....-|...|-+.|+-.+|.+.+-+--. -++-+..+...|..-|....-+++|+.+|++
T Consensus 575 aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 575 AQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988776 777 566788888899999999999887655332 2344568888899999999999999999999
Q ss_pred C-CCCCCHHHHHHHHHHH-HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 045600 817 L-PCKPSVSILESLLGAC-RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRV 879 (899)
Q Consensus 817 ~-~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~ 879 (899)
. -..|+..-|..++..| ++.|++.+|...|+.+....|++-..+-.|..+....|- .+|.++
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key 715 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEY 715 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHH
Confidence 8 6889999999888776 568999999999999999999999999999998888773 334444
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1e-11 Score=125.40 Aligned_cols=215 Identities=14% Similarity=0.104 Sum_probs=176.9
Q ss_pred hcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHH
Q 045600 665 GVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAAL 741 (899)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 741 (899)
+.-.|+.-.+..-|+..++....+.. .|--+..+|....+.++-.+.|+... +.|+.+|..-...+.-.+++++|+
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 34567888899999998888655433 26667778999999999999999876 446778888888888889999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 045600 742 ELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC 819 (899)
Q Consensus 742 ~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 819 (899)
.-|++.++ +.| +...|..+.-+..+.++++++...|++.++ .++--+..|+....++...+++++|.+.++.. ..
T Consensus 415 aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998 788 456888888888899999999999999985 34555699999999999999999999999987 44
Q ss_pred CCC---------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 820 KPS---------VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 820 ~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.|+ +.+-..++-.-. .+|+..|+.+++++++++|....++..|+..-.++|+.+||+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444 222233332223 3899999999999999999999999999999999999999999999753
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.5e-14 Score=147.91 Aligned_cols=255 Identities=15% Similarity=0.149 Sum_probs=112.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-HhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 045600 627 ISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIIS-AGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN 705 (899)
Q Consensus 627 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 705 (899)
...+.+.|++++|++++++......+|+...|-.++. .+-..++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455566677777777755444332344444444333 344566777777777777766444 45556666666 68889
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 045600 706 ISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSG-VRPNEITYLGVLSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 706 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m 782 (899)
+++|.+++.... .+++..+..++..+...++++++.++++++.... ..++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998887764 4566778888889999999999999999987643 2346667888888999999999999999999
Q ss_pred HHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 045600 783 VEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGS 859 (899)
Q Consensus 783 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 859 (899)
++. .|+ ......++..+...|+.+++.++++.. ..+.++..|..+..++...|+.++|...++++.+.+|+|+..
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 954 454 577888999999999999988887766 224556678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 860 YVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 860 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+++.++.+.|+.++|.++++++.+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988753
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=8.2e-09 Score=104.26 Aligned_cols=456 Identities=11% Similarity=0.116 Sum_probs=328.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhccCC
Q 045600 389 ALLSMYAKLGNIDSAKFLFDQIPN---RNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVS-IISVLSGCSKLD 464 (899)
Q Consensus 389 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~ 464 (899)
....-=...+++..|..+|++... +++..|-..+..=.++..+..|..++++.... -|-..- +-..+..=-..|
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhc
Confidence 333334456778888999988875 56778888888899999999999999988764 343322 222233334568
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045600 465 DVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMS--TRSSVSWNTLISRCVQNGAVEEAVILLQRM 542 (899)
Q Consensus 465 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 542 (899)
++..|.++|....+ ..|+...|++.|+.=.+-..++.|+.++++.. .|++.+|--...-=-++|+...|..+|...
T Consensus 156 Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 156 NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 89999999987766 47999999999999999999999999999865 489999998888889999999999999987
Q ss_pred HHc-CC-CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhhhhHHHH-----hhc
Q 045600 543 QKE-GV-ELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVA-DVTFLNALITMYCNCGSTNDGRLCLLL-----FQM 614 (899)
Q Consensus 543 ~~~-g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~ 614 (899)
.+. |- ..+...+.++..-=.+...++.|.-+|+..+..-... ....|..+...--+-|+....+....- ++.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 763 11 1123344444444456678889999999888764332 244555555555555655444311111 111
Q ss_pred C---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-------HHH---HHHHHhcccCCHHHHHHHHHHH
Q 045600 615 G---DKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNV-------TVL---SIISAGVLINSLNLTHSLMAFV 681 (899)
Q Consensus 615 ~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~---~ll~a~~~~~~~~~a~~~~~~~ 681 (899)
. .+-|-.+|-..+..-...|+.+...++|++.... ++|-.. .|. ..+-.-....+++.+.++++..
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 1236678888888888899999999999999876 455321 121 1222224578899999999998
Q ss_pred HHhCCCCChhHHHHHHHHh----HhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-
Q 045600 682 IRKGLDKHVAVSNALMDSY----VRCGNISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP- 754 (899)
Q Consensus 682 ~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 754 (899)
++. ++....++.-+--+| .++.++..|.+++...+ .|...++...|..-.+.++++...+++++..+ ..|
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe 469 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPE 469 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChH
Confidence 883 333445555444444 47889999999999887 67788888889888899999999999999998 778
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 045600 755 NEITYLGVLSACSHAGLVEQSKMVFKSMVEHG-ISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGA 832 (899)
Q Consensus 755 ~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 832 (899)
|..+|.-....=...|+.+.|..+|+-.+... +.-....|...|+.-...|.++.|..+++++ ...+-...|-++...
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 67788888888888999999999999988433 2223367777888888999999999999988 444555577777655
Q ss_pred HH-----hhC-----------CHHHHHHHHHHHHhc
Q 045600 833 CR-----IHG-----------NVELGEIISGMLFEM 852 (899)
Q Consensus 833 ~~-----~~g-----------~~~~a~~~~~~~~~~ 852 (899)
-. +.+ +...|..+++++...
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 43 333 455666777766543
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=8.8e-12 Score=131.49 Aligned_cols=278 Identities=14% Similarity=0.040 Sum_probs=212.5
Q ss_pred ChhhhhhHHHHhhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHhcccCCHHHHH
Q 045600 601 STNDGRLCLLLFQMGDK---REISLWNAIISVYVQTNKAKQAVAFFTELLGAG--LEPDNVTVLSIISAGVLINSLNLTH 675 (899)
Q Consensus 601 ~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~ 675 (899)
...+|. ..|...+. ........+..+|...+++++|..+|+.+.+.. ..-+...|.+.+-.+-+ +-++
T Consensus 334 ~~~~A~---~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 334 NCREAL---NLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHH---HHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 345565 45544332 244555678889999999999999999998853 11244566666654321 1222
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 045600 676 SLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYK---DAFSWSVMINGYGLYGDGEAALELFKQMQLSGV 752 (899)
Q Consensus 676 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 752 (899)
.++..-.-.--+-.+.+|.++.++|.-+++.+.|++.|++.+.- ...+|+.+..-+.....+|+|...|+.... +
T Consensus 407 s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 22222222222337889999999999999999999999998843 456888888888888999999999998875 6
Q ss_pred CCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 045600 753 RPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILES 828 (899)
Q Consensus 753 ~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 828 (899)
.|.. ..|.-|.-.|.++++++.|.-.|++++ .+.|.. .....+...+.+.|+.|+|+.+++++ ...| ++-.-..
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhh--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 6744 477778889999999999999999998 556655 67778889999999999999999988 3333 3444445
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
.+..+...+++++|...++.+.+.-|++..++..+|.+|.+.|+.+.|+..|..+.+-+++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5667778899999999999999999999999999999999999999999999998865554
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.6e-11 Score=129.54 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHhHhcCCHHH-HHH
Q 045600 635 KAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKG--LDKHVAVSNALMDSYVRCGNISM-ARK 711 (899)
Q Consensus 635 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~-A~~ 711 (899)
+..+|+..|.+..+. +.-......-+-.+|...+++++++.+|+.+.+.. ..-+.++|...+-.+-+.-.+.- |.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 455666666663332 22222334445556666677777777777666652 12255555555433322111111 111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC
Q 045600 712 LFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK 790 (899)
Q Consensus 712 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 790 (899)
+.+. -+..+.+|.++.++|.-+++.+.|++.|++..+ +.| ...+|..+..-+.....+|.|...|+..+ ++.|.
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~r 487 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDPR 487 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCch
Confidence 1111 123456677777777777777777777777666 566 44566666666666667777777776655 33332
Q ss_pred c-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045600 791 M-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSI-LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIY 867 (899)
Q Consensus 791 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 867 (899)
- ..|.-++-.|.+.++++.|.-.|+++ .+.|.... .-.++..+.+.|+.|+|+.+++++..++|.|+-.-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 2 33334556666777777777666666 55555443 445555566667777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 045600 868 ASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 868 ~~~g~~~eA~~~~~~~~~~ 886 (899)
...++++||+..++++++.
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 7777777777777776653
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.8e-10 Score=124.80 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=182.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhH
Q 045600 529 NGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLC 608 (899)
Q Consensus 529 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 608 (899)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+..++..+.+....+...........+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455665555554433321111 1122222333355566666666666555432222112212234555666666666644
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC
Q 045600 609 LLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK 688 (899)
Q Consensus 609 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 688 (899)
.+......+.++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 44444444456666677777777778888888888888877644221 111000
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSA 765 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 765 (899)
...|..++.......+.+...++++.++ +.++.....+...+...|+.++|.+++++..+ ..||.... ++.+
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~ 303 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIP 303 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHh
Confidence 0112223333334445666777777765 34777888888899999999999999988887 34454221 2334
Q ss_pred HHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHH
Q 045600 766 CSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
....++.+++.+..+...+.. +-|+..+..+...+.+.|+|++|.+.+++. ...|+...+..+...+.+.|+.++|..
T Consensus 304 ~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred hccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445688999999998888533 334467778899999999999999999888 778998888888899999999999999
Q ss_pred HHHHHHhcC
Q 045600 845 ISGMLFEMD 853 (899)
Q Consensus 845 ~~~~~~~~~ 853 (899)
.+++.+.+.
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999887754
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2e-09 Score=111.49 Aligned_cols=261 Identities=14% Similarity=0.053 Sum_probs=202.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
++........-+-..+++.+..+++++..+.. ++....+..=|.++...|+..+-..+-..+.+.-+. ...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44444555556667778888888888887763 555556666666777777777766666666665443 5567777777
Q ss_pred HhHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHH
Q 045600 699 SYVRCGNISMARKLFGSLIYK---DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQ 774 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~ 774 (899)
.|.-.|+..+|.+.|.+...- -...|-.+...|+-.|..++|+..+...-+ +-|- ...+..+.--|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHH
Confidence 788889999999999987633 346899999999999999999999988876 4443 2344555556888999999
Q ss_pred HHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhhCCHHHHHH
Q 045600 775 SKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKLP--------CKP-SVSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 775 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
|.+.|.+.. ++.|+ +..++-+.-.....+.+.+|..+|+... .++ -..++..|+..+++.+.+++|+.
T Consensus 399 Ae~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999988 55564 4777778888888899999999887651 111 23468888999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 845 ISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 845 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
.+++++.+.|.++.++..+|-+|...|+++.|++.|.+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999874
No 43
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3e-07 Score=101.15 Aligned_cols=733 Identities=11% Similarity=0.080 Sum_probs=401.6
Q ss_pred hhhccHHHHhhcCCCCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhH
Q 045600 92 FEITSYHIALSSFPIIKK---PCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGRE 168 (899)
Q Consensus 92 ~~~~~~~~a~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 168 (899)
+.++.|++|-.+-..-|+ |+.-|-|..=..=+..|++.-.+..|..+...| +.|.+-=.-+.+.-...|+.+....
T Consensus 371 faqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlek 449 (1666)
T KOG0985|consen 371 FAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEK 449 (1666)
T ss_pred HhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHH
Confidence 345566666666555554 455555555555566677777777888777776 2333322223333334444444444
Q ss_pred HHHHH-----HHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCCC-----------CCceeHHHHHHHHHcCCCchHH
Q 045600 169 IHCVI-----FRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIPL-----------ADLVSCNTLMAGYSFNGLDQEA 232 (899)
Q Consensus 169 ~~~~~-----~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A 232 (899)
++.+= .+.|--.-.+--+.-++.|-|.+-+..+...|.+..+ --..-|-.+|....+ -+++.+
T Consensus 450 Wl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~sPD~~ 528 (1666)
T KOG0985|consen 450 WLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQA 528 (1666)
T ss_pred HhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cChhHH
Confidence 33321 1223111111111223444454444444444443321 011124455655554 567777
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHhhc----------------cCChhhhh---HHHHHHHHhCC----------CCCc
Q 045600 233 LETFRRILTVGLKPNVSTFSSVIPVCTR----------------LGHFCFGK---SLHGFTIKSGY----------LFDD 283 (899)
Q Consensus 233 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~g~~~~a~---~~~~~~~~~g~----------~~~~ 283 (899)
.++...|.+... ...-++.+...+.. ....+.+. ++++.-...+. ..+.
T Consensus 529 ~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtH 606 (1666)
T KOG0985|consen 529 LQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTH 606 (1666)
T ss_pred HHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcccccc
Confidence 777777765321 12222222222222 22222211 12222111111 0111
Q ss_pred chhhHHHHhhhcCCChhhHHHHHhhcCC--CCcccHHHH-----HHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 045600 284 FLVPALISMYAGDLDLSTARKLFDSLLE--KNASVWNAM-----ISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSII 356 (899)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 356 (899)
+-+..+.+.|.+.|-...|.+.+..+.. +.++ .+.+ +-.|.-.-.++++++.++.|...+++-+..+...+-
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2245566677788888888887776632 2111 1111 224444556888999999999888887777766665
Q ss_pred HHhhccCCcccchHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------
Q 045600 357 PSCENYCSFQCGESLTACVIK-----------NGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPN------------- 412 (899)
Q Consensus 357 ~a~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 412 (899)
.-|...-..+.-.++|+.... -++.-|+.+.-..|.+.++.|++.+..++.++-.-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 555443333333333332221 13456777778889999999999888887765321
Q ss_pred ------------------CCcchH------HHHHHHHHH-----------------------------------------
Q 045600 413 ------------------RNLLCW------NAMMSAYVR----------------------------------------- 427 (899)
Q Consensus 413 ------------------~~~~~~------~~li~~~~~----------------------------------------- 427 (899)
+|.+.| -..|..|.+
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 011111 112333333
Q ss_pred -----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHH-HH---HHH------HHHH-----------hCC
Q 045600 428 -----NRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLG-KS---AHA------FSLR-----------KGI 481 (899)
Q Consensus 428 -----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~---~~~------~~~~-----------~g~ 481 (899)
.++..--+..++.....|. .|..|++.+...|..+++-.+. .+ .++ ...+ .|.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 2222222333444444442 4555666666555544332111 00 000 0000 000
Q ss_pred --------CCcHhHHHHHHHHHHcCCChHHHHHHHhhcC-----------------CCChhhHHHHHHHHHhcCCHHHHH
Q 045600 482 --------VSNLDVLNALLMFYSDGGQFSYAFTLFHRMS-----------------TRSSVSWNTLISRCVQNGAVEEAV 536 (899)
Q Consensus 482 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~~A~ 536 (899)
......+....+-+.+..+.+--.+++.+-. ..|+..-+..+.++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 0011122222222333333333333331110 024444455566677777777777
Q ss_pred HHHHHHHHcCCC--CCHHHHHHHHHH---------------------------HhcCCChHHHHHHHHHHHHhCCCCChh
Q 045600 537 ILLQRMQKEGVE--LDMVTLISFLPN---------------------------LNKNGNIKQGMVIHGYAIKTGCVADVT 587 (899)
Q Consensus 537 ~~~~~m~~~g~~--p~~~t~~~ll~~---------------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 587 (899)
++++++.-.+-. -+...-+.++-. +...+-+++|..+|+.. ..+..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~ 1079 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVS 1079 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHH
Confidence 777776432100 001111111111 11112223333333221 11222
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 045600 588 FLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVL 667 (899)
Q Consensus 588 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 667 (899)
..+.|++ ..+.++.|. +..++.. .+..|..+..+-.+.|...+|++-|-+ .-|+..|..++..+.+
T Consensus 1080 A~~VLie---~i~~ldRA~---efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAY---EFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASR 1145 (1666)
T ss_pred HHHHHHH---HhhhHHHHH---HHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHh
Confidence 2222222 223344443 3333332 456799999999999999999887764 3567889999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 045600 668 INSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQM 747 (899)
Q Consensus 668 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 747 (899)
.|.+++-..++....++.-+|.+. +.|+-+|++.+++.+-++++. .||..-.....+-|...|.++.|.-+|...
T Consensus 1146 ~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred cCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 999999999999888887777666 689999999999988877764 477777778888888889998887666543
Q ss_pred HHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 045600 748 QLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILE 827 (899)
Q Consensus 748 ~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 827 (899)
..|..|...+...|++..|...-++. .+..+|..+..++...+.+.-|. +.-+..-....-+.
T Consensus 1221 ---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1221 ---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELE 1283 (1666)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHH
Confidence 35778888888888888877665442 35578888888887776654332 11112223445578
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
.++..|..+|-+++.+.+++..+.+..-+.+.+..|+-+|.+-.
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999888999999998888754
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=5.4e-09 Score=112.33 Aligned_cols=411 Identities=15% Similarity=0.090 Sum_probs=263.6
Q ss_pred HhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 045600 478 RKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELD-MVT 553 (899)
Q Consensus 478 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 553 (899)
-..+..+..+|..+.-+..++|+++.+-+.|++... .....|+.+-..+...|....|..++++-....-.|+ ...
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 345667889999999999999999999999998765 3566899999999999999999999988765433354 333
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhcC------Chhhhh--hHHHHhhcC---CC
Q 045600 554 LISFLPNL-NKNGNIKQGMVIHGYAIKT--GC--VADVTFLNALITMYCNCG------STNDGR--LCLLLFQMG---DK 617 (899)
Q Consensus 554 ~~~ll~~~-~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g------~~~~a~--~~~~~~~~~---~~ 617 (899)
+...-..| .+.+.++++..+-.++++. +. ......|..+.-+|...- ...++. ..+..+++. ..
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 43333444 3457888888888777762 11 122333444444443221 111111 011222222 22
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCChhHHHHH
Q 045600 618 REISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK-GLDKHVAVSNAL 696 (899)
Q Consensus 618 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l 696 (899)
.|+...--+.--|+-.++.+.|++..++..+.+-.-+...+..+.-.+...+++..|+.+.+..... |....... .-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--GK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--hh
Confidence 2333333344456777889999999999988866777788877777788888999999988887655 43211110 01
Q ss_pred HHHhHhcCCHHHHHHHHHhcC------------------------------CC-C-HHHHHHHHHHHHhCCCHHHHHHHH
Q 045600 697 MDSYVRCGNISMARKLFGSLI------------------------------YK-D-AFSWSVMINGYGLYGDGEAALELF 744 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~------------------------------~~-~-~~~~~~li~~~~~~g~~~~A~~~~ 744 (899)
+..-..-++.++|......+. .+ + +.++..+..-... +.+.+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc
Confidence 111122344444443333221 00 1 1122222111111 000000000
Q ss_pred HHHHHcCCCCCh--------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHH
Q 045600 745 KQMQLSGVRPNE--------ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVK 815 (899)
Q Consensus 745 ~~m~~~g~~p~~--------~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 815 (899)
. +...-+.|.. ..|......+.+.+..++|...+.+.. ++.|- ...|...+..+...|++++|.+.|.
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~--~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS--KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 1111233322 123444557788899999988877776 33343 4777778889999999999999888
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhhCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 045600 816 KL-PCKPS-VSILESLLGACRIHGNVELGEI--ISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKV 891 (899)
Q Consensus 816 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 891 (899)
.. ...|+ +....+++..+.+.|+...|.. ++..+++.+|.++.+|+.||.++.+.|+.++|.+-|+...+-.. ..
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~ 787 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SN 787 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CC
Confidence 76 66666 4578889999999999888888 99999999999999999999999999999999999998876443 45
Q ss_pred CCccc
Q 045600 892 PGFSL 896 (899)
Q Consensus 892 ~~~~~ 896 (899)
|..+|
T Consensus 788 PV~pF 792 (799)
T KOG4162|consen 788 PVLPF 792 (799)
T ss_pred Ccccc
Confidence 66665
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=2.5e-10 Score=123.58 Aligned_cols=275 Identities=10% Similarity=0.048 Sum_probs=199.4
Q ss_pred cCChhhhhhHHHHhhcCCCC--Chhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH--HHHHHhcccCCHHH
Q 045600 599 CGSTNDGRLCLLLFQMGDKR--EISL-WNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVL--SIISAGVLINSLNL 673 (899)
Q Consensus 599 ~g~~~~a~~~~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~ 673 (899)
.|+++.|+ +........ ++.. |-.......+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~---k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVE---KLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHH---HHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 46666666 333332221 1222 222234447788888888888888764 45554333 22456778889999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC---CH--------HHHHHHHHHHHhCCCHHHHHH
Q 045600 674 THSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYK---DA--------FSWSVMINGYGLYGDGEAALE 742 (899)
Q Consensus 674 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~ 742 (899)
|...++.+.+..+. ++.....+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999888877754 6677888899999999999999888888621 11 133444444445556677777
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 045600 743 LFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP 821 (899)
Q Consensus 743 ~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 821 (899)
+++.+.+. .+.+......+..++...|+.++|.+++++..+. .|+.... ++.+....|+.+++.+..++. +..|
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77776542 3346778888999999999999999999998863 4444222 334444569999999999888 5555
Q ss_pred C-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 822 S-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 822 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+ +.....++..|...+++++|...++++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 4567788999999999999999999999999885 4567899999999999999999998754
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.4e-09 Score=108.08 Aligned_cols=248 Identities=14% Similarity=0.105 Sum_probs=188.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHH
Q 045600 630 YVQTNKAKQAVAFFTELLGAGL--EPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNIS 707 (899)
Q Consensus 630 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 707 (899)
.-...++++|+.+|+++.++.. --|..+|..++-.-... ....++..-...--+-.+.+...+.+.|.-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 3445678888888888887731 12456676666542221 11222222222211123445677778888889999
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 708 MARKLFGSLIY---KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 708 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
+|...|++..+ .....|+.+..-|...++...|++.+++..+ +.| |-..|..|.++|.-.+.+.-|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 99999998873 3456899999999999999999999999998 778 77899999999999999999999999988
Q ss_pred HcCCcc-CcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-------cC
Q 045600 784 EHGISQ-KMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFE-------MD 853 (899)
Q Consensus 784 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~ 853 (899)
+ ++| |...|..|+++|.+.++.++|.+-+++. ....+...+..|+..+.+-++..+|...+++.++ ..
T Consensus 426 ~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 E--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred h--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 4 455 4589999999999999999999999988 3334557788899999999999999999998887 34
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 854 PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 854 p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
|+...+..-|+.-+.+.+++++|..+......
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 55555666788888999999999887766654
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.1e-08 Score=100.18 Aligned_cols=459 Identities=10% Similarity=0.084 Sum_probs=327.9
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 045600 417 CWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYS 496 (899)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 496 (899)
.|-....-=...+++..|..+|++...-. ..+...+..-+..=.+...+..|..+++..+..-...|. .|-..+.+=-
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHH
Confidence 33333333344667788889999887643 334444555566666778888999999988875433333 3444455556
Q ss_pred cCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHH
Q 045600 497 DGGQFSYAFTLFHRMST--RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIH 574 (899)
Q Consensus 497 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 574 (899)
..|++..|+.+|++-.. |+...|++.|..=.+.+.++.|..++++..- +.|+..+|.-...-=.+.|.+..+..++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 67999999999999775 9999999999999999999999999999887 7799999998888889999999999999
Q ss_pred HHHHHh-CC-CCChhHHHHHHHHHHhcCChhhhhhHHHHh-hcCCCC-ChhhHHHHHHHHHHcCC---HHHHHH-----H
Q 045600 575 GYAIKT-GC-VADVTFLNALITMYCNCGSTNDGRLCLLLF-QMGDKR-EISLWNAIISVYVQTNK---AKQAVA-----F 642 (899)
Q Consensus 575 ~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~~~li~~~~~~g~---~~~A~~-----l 642 (899)
+.+++. |- ..+...+.+....-.++..++.|..+++.. +.++.. ....|.....---+-|+ .++++- -
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 988864 21 223455566666666777888887555443 344433 24455544444444455 333332 2
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHh--------HhcCCHHHHHHHH
Q 045600 643 FTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHV-AVSNALMDSY--------VRCGNISMARKLF 713 (899)
Q Consensus 643 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~--------~~~g~~~~A~~~~ 713 (899)
++++.+.+ +-|-.++--.+..-...|+.+...++++..+..-++... ..|.-.|-.. ....+.+.+.+++
T Consensus 311 YE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444443 456667777777777789999999999998877433322 2222222111 2467888999999
Q ss_pred HhcC---CCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045600 714 GSLI---YKDAF----SWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHG 786 (899)
Q Consensus 714 ~~~~---~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 786 (899)
+..+ +...+ .|-.......++.++..|.+++.... |.-|-..+|...|..=.+.+.++....+|++.++.+
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 8776 22333 44455555667889999999998876 588999999999999999999999999999999654
Q ss_pred CccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 045600 787 ISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSV----SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 787 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
+-+..+|...+..-...|+++.|..+|+-+-..|.. ..|.+.+..-...|.++.|..+|+++++..+-.. ++..
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 224488888888888899999999999987555532 3588888888999999999999999999876543 6655
Q ss_pred HHHHHH-----hcC-----------ChHHHHHHHHHHH
Q 045600 863 LHNIYA-----SAG-----------RWEDAYRVRSCMK 884 (899)
Q Consensus 863 l~~~y~-----~~g-----------~~~eA~~~~~~~~ 884 (899)
.+.--. +.| +...|.++|+++.
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 554433 344 5667778877664
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=6.4e-11 Score=129.06 Aligned_cols=279 Identities=10% Similarity=0.007 Sum_probs=194.5
Q ss_pred HhcCChhhhhhHHHHhhcCCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHhcccCCH
Q 045600 597 CNCGSTNDGRLCLLLFQMGDK--R-EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNV--TVLSIISAGVLINSL 671 (899)
Q Consensus 597 ~~~g~~~~a~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~ 671 (899)
...|+++.|+ +...+... | ....+-.......+.|+++.|.+.+.+..+.. |+.. .-..........|++
T Consensus 95 ~~~g~~~~A~---~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAE---KLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHH---HHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 4678999998 44433332 2 23334444567778899999999999987653 5543 333346667789999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CCHHHHH----HHHHHHHhCCCHHHHHHHH
Q 045600 672 NLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIY---KDAFSWS----VMINGYGLYGDGEAALELF 744 (899)
Q Consensus 672 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~~A~~~~ 744 (899)
+.|...++.+.+..+. +......+...+...|++++|.+.+..+.+ .+...+. ....+....+..+++.+.+
T Consensus 170 ~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999988755 557788889999999999999999988872 3444332 1112223333444444566
Q ss_pred HHHHHcCC---CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcch--H-HHHHHHHhhcCChHHHHHHHHhC-
Q 045600 745 KQMQLSGV---RPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEH--Y-ACMVDLLGRTGHLNEAFIFVKKL- 817 (899)
Q Consensus 745 ~~m~~~g~---~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~- 817 (899)
.++.+..- +.+...+..+...+...|+.++|.+++++..+.. |+... + ..........++.+.+.+.+++.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 66655321 1266778888889999999999999999998543 33321 1 11222223457778888888776
Q ss_pred CCCCCH---HHHHHHHHHHHhhCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 818 PCKPSV---SILESLLGACRIHGNVELGEIISG--MLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 818 ~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
+..|+. ....++++.+.+.|++++|.+.++ ...+..|++. .+.+++.++.+.|+.++|.++|++..
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444443 456789999999999999999999 5666777644 46699999999999999999999854
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=3.9e-10 Score=122.88 Aligned_cols=292 Identities=11% Similarity=0.011 Sum_probs=183.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhh
Q 045600 527 VQNGAVEEAVILLQRMQKEGVELDM-VTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDG 605 (899)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 605 (899)
...|+++.|.+.+.+..+ ..|+. ..+.....+....|+.+.+.+++....+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~--~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD--HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 346777777777776655 34543 333444556666777777777777766543332222333345556666666666
Q ss_pred hhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhC
Q 045600 606 RLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKG 685 (899)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 685 (899)
...++......+.++..+..+...+.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH----------------------
Confidence 5433333333444555666666667777777777777777776653222 11110000
Q ss_pred CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH--HH
Q 045600 686 LDKHVAVSNALMDSYVRCGNISMARKLFGSLIY---KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEIT--YL 760 (899)
Q Consensus 686 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~ 760 (899)
..+..+++.-......+...+.++..+. .++..+..+...+...|+.++|.+++++..+ ..||... +.
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhH
Confidence 0011111111122234445555555552 4777888888889999999999999999887 4565542 11
Q ss_pred HHH-HHHHccCCHHHHHHHHHHHHHcCCccCc---chHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHH
Q 045600 761 GVL-SACSHAGLVEQSKMVFKSMVEHGISQKM---EHYACMVDLLGRTGHLNEAFIFVKK--L-PCKPSVSILESLLGAC 833 (899)
Q Consensus 761 ~l~-~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~ 833 (899)
.+. ......++.+.+.+.++...+. .|+. .....++..+.+.|++++|.+.+++ . ...|++..+..+...+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 222 2334567888888888887743 2333 4566889999999999999999994 3 6789998888999999
Q ss_pred HhhCCHHHHHHHHHHHHhc
Q 045600 834 RIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~ 852 (899)
.+.|+.++|.+++++.+..
T Consensus 381 ~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987654
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.5e-09 Score=105.47 Aligned_cols=327 Identities=11% Similarity=0.040 Sum_probs=225.7
Q ss_pred CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhH-HH
Q 045600 547 VELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLW-NA 625 (899)
Q Consensus 547 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 625 (899)
..-|...+........+.|....|...+...+.. -+..|.+.+....-..+.+.+. .+....+..+...- --
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~---~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILS---ILVVGLPSDMHWMKKFF 232 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHH---HHHhcCcccchHHHHHH
Confidence 3344443333334445666777777766655432 1233444443333333333332 22222222111111 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCC--CChhHHHHHHHHhHhc
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLD--KHVAVSNALMDSYVRC 703 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~ 703 (899)
+..++....+.+++..-.......|++-+...-+-...+.-...+++.|+.+|+++.+..+- -|..+|+.++-.-..+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 33455666678888888888888886554444333444456778999999999999988321 2666777665333322
Q ss_pred CCHHH-HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHH
Q 045600 704 GNISM-ARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 704 g~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~ 781 (899)
.++.- |..+++ +.+--+.|..++.+-|.-.++.++|+..|++..+ +.|.. ..|..+.+-|....+...|.+-|+.
T Consensus 313 skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22221 222222 2222344566677777888899999999999998 77865 4677777799999999999999999
Q ss_pred HHHcCCcc-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 782 MVEHGISQ-KMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 782 m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
+++ +.| |-..|..|+.+|.-.+...=|+-++++. .++| |+..|.+|+..|.+-++.++|++.++++.....-+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 994 444 4488889999999999999999999998 6666 6778999999999999999999999999999988999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
++..|+++|.+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999987654
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=2.1e-12 Score=133.62 Aligned_cols=254 Identities=13% Similarity=0.158 Sum_probs=102.0
Q ss_pred HHHHHHhcCChhhhhhHH-HHhhcC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccC
Q 045600 592 LITMYCNCGSTNDGRLCL-LLFQMG-DKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLIN 669 (899)
Q Consensus 592 l~~~~~~~g~~~~a~~~~-~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 669 (899)
+...+.+.|++++|..++ +..... +..+...|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345555666666665322 222222 2335555555666666677777777777777765422 34445555555 6777
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 045600 670 SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI-----YKDAFSWSVMINGYGLYGDGEAALELF 744 (899)
Q Consensus 670 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 744 (899)
++++|..++....+.. ++...+..++..+.+.++++++.++++.+. .++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7788877776655443 345556677778888888888888888754 346677888888888899999999999
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-
Q 045600 745 KQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP- 821 (899)
Q Consensus 745 ~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 821 (899)
++..+ ..|+ ......++..+...|+.+++.++++...+.. +.++..+..++.+|...|+.++|+.++++. ...|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99888 6775 5577788888888899988888888877543 555677788889999999999999998887 3344
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 045600 822 SVSILESLLGACRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 852 (899)
|+.....+..++...|+.++|..+.+++.+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6777788888888999999998888877653
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.5e-09 Score=106.93 Aligned_cols=447 Identities=12% Similarity=0.094 Sum_probs=271.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhccCCChHHHHHHHHHHHHhCCCCcH----hHHHHHHHHH
Q 045600 421 MMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSI-ISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNL----DVLNALLMFY 495 (899)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~ 495 (899)
+..-|..+....+|+..|+-..+...-|+.-.+ ..+-..+.+...+..|..+++..+.+-...+. .+.+.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344555566777788777777776666665432 22333455666777777777766664332222 2334444456
Q ss_pred HcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------------HHHHHHH--
Q 045600 496 SDGGQFSYAFTLFHRMST--RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMV------------TLISFLP-- 559 (899)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------t~~~ll~-- 559 (899)
.+.|.+++|..-|+...+ |+..+--.|+-++..-|+.++..+.|.+|+.-...||.. ..+..+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 778888888888877654 565554445555556678888888888887643333322 2221111
Q ss_pred ---HHhcCC--ChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHc
Q 045600 560 ---NLNKNG--NIKQGMVIHGYAIKTGCVADVTF-LNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQT 633 (899)
Q Consensus 560 ---~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 633 (899)
-+.+.+ +.+++.-.-..++.--+.|+... +..-+..+-.....+-|. + .--.-...|.+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~------------d--lei~ka~~~lk~ 432 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI------------D--LEINKAGELLKN 432 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh------------h--hhhhHHHHHHhc
Confidence 111111 11111111111111122222111 011111111111111110 0 001123457889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHH--HHHhcccCCHHHHHHHHHHHHHh-CCCCChhHHHHHHHHhHhcCCHHHHH
Q 045600 634 NKAKQAVAFFTELLGAGLEPDNVTVLSI--ISAGVLINSLNLTHSLMAFVIRK-GLDKHVAVSNALMDSYVRCGNISMAR 710 (899)
Q Consensus 634 g~~~~A~~l~~~m~~~g~~p~~~t~~~l--l~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 710 (899)
|+++.|+++++-..++.-+.-...-+.| +.-+--..++..|.++-+..... ...| .....-.+.-...|++++|.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~--~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA--AALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH--HHhhcCCceeeecCcHHHHH
Confidence 9999999999988876533332222222 22222234566666666655433 1111 11111112233578999999
Q ss_pred HHHHhcCCCCHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045600 711 KLFGSLIYKDAFSWSVMI---NGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHG 786 (899)
Q Consensus 711 ~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 786 (899)
+.+.+....|...-.+|. -.+-..|+.++|+..|-++.. +-. +......+...|....+..+|.+++.+... -
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~s-l 587 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANS-L 587 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-c
Confidence 999999977765444333 346778999999999988865 433 556777888899999999999999987763 2
Q ss_pred CccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 045600 787 ISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLH 864 (899)
Q Consensus 787 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 864 (899)
++.|+..+..|.+.|-+.|+-.+|++..-.. ..-| +..+..-|...|....-.++++..++++.-+.|+...--..++
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 3445688999999999999999999976554 4444 5667777777777777789999999999888887555556677
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 045600 865 NIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 865 ~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
.++.+.|++.+|..+|+...++
T Consensus 668 sc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 8888999999999999998753
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=1.8e-06 Score=91.21 Aligned_cols=302 Identities=10% Similarity=0.165 Sum_probs=171.6
Q ss_pred cchhhHHHHhhhcCCChhhHHHHHhhcCC-----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 045600 283 DFLVPALISMYAGDLDLSTARKLFDSLLE-----KNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIP 357 (899)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 357 (899)
+..|-.-+....++|++..-+..|++... .....|...+.-.-..|-++.++.++++..+- .|. .-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 44555666666778888888888887532 23456888888777888888888888888763 232 2445566
Q ss_pred HhhccCCcccchHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCh---HHHHHHHhcCCC--CC--cchHHHHHHH
Q 045600 358 SCENYCSFQCGESLTACVIKNG------LGNQPSVLTALLSMYAKLGNI---DSAKFLFDQIPN--RN--LLCWNAMMSA 424 (899)
Q Consensus 358 a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~--~~--~~~~~~li~~ 424 (899)
.++..+++++|.+.+..++... .+.+...|.-+-+..++.-+. -....+++.+.. +| ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6777888888887777765432 234455566666555554332 222334444443 22 2468888888
Q ss_pred HHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHH
Q 045600 425 YVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYA 504 (899)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 504 (899)
|.+.|.++.|.++|++-.+. .....-|..+..+|+.-.....+..+- ...+.+..+. ..-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 99999999999888887654 233444555666555432221111111 0000111110 00112222
Q ss_pred HHHHhhcCC---------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhc
Q 045600 505 FTLFHRMST---------------RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDM------VTLISFLPNLNK 563 (899)
Q Consensus 505 ~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~ 563 (899)
+.-|+.+.. .++..|..-+. +..|+..+-+..|.+..+. +.|.. ..|..+..-|-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 333333221 24445544333 3456777778888887764 44432 245666677777
Q ss_pred CCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChhhhh
Q 045600 564 NGNIKQGMVIHGYAIKTGCVAD---VTFLNALITMYCNCGSTNDGR 606 (899)
Q Consensus 564 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 606 (899)
.|+++.|..+|++..+...+-- ..+|..-.++-.+..+++.|.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 7888888888877766543321 233434444444455555555
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=3.5e-10 Score=114.19 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=165.9
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~ 764 (899)
....+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|++.+++..+. .| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 45667778889999999999999999876 335678888999999999999999999999884 45 4567778888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCcc-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQ-KMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVEL 841 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 841 (899)
.+...|++++|.+.+++..+....+ ....+..++.++...|++++|...+++. ...| +...+..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998643223 3357777899999999999999999887 3344 45678888899999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 842 GEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 842 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
|...++++.+..|+++..+..++.++...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999898999999999999999999999999998865
No 55
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.8e-06 Score=93.82 Aligned_cols=663 Identities=13% Similarity=0.114 Sum_probs=359.4
Q ss_pred HHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhh
Q 045600 190 DFYAKKGEMLTARLLFDQIPL---ADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCF 266 (899)
Q Consensus 190 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 266 (899)
+.+...|++++|-++-..-|+ ++..|-+.+=..=...|...--+..|..+...| +.|..----+.+.-...|+.+.
T Consensus 368 neLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqL 446 (1666)
T KOG0985|consen 368 NELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQL 446 (1666)
T ss_pred HHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHH
Confidence 344458999999988877774 566677777666677888888888899888877 3344332333333334444333
Q ss_pred hhHHHHH-----HHHhCCCCCc-------------chhhHHHHhhhcCCChhhHHHHHhhcC-CCCcccHHHHHHHHHcC
Q 045600 267 GKSLHGF-----TIKSGYLFDD-------------FLVPALISMYAGDLDLSTARKLFDSLL-EKNASVWNAMISAYTQS 327 (899)
Q Consensus 267 a~~~~~~-----~~~~g~~~~~-------------~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~ 327 (899)
....+.+ -.+.|-...+ .+-+..+.+|+.+|.++++.-...+.- .|| |-.+|....+
T Consensus 447 lekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r- 522 (1666)
T KOG0985|consen 447 LEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR- 522 (1666)
T ss_pred HHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-
Confidence 3322221 1122311111 122344555555565555554444332 233 4555665555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHH------------------------------HHHHH
Q 045600 328 KKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLT------------------------------ACVIK 377 (899)
Q Consensus 328 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~------------------------------~~~~~ 377 (899)
-.++.+.++...|.+... ....++.+...+-..+..+.+..++ +.+.-
T Consensus 523 ~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILg 600 (1666)
T KOG0985|consen 523 SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILG 600 (1666)
T ss_pred cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHh
Confidence 567777777777765321 1122222222222222222222222 11222
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCcchHHH-----HHHHHHHCCChhHHHHHHHHHHHcCCCCCHH
Q 045600 378 NGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPN-RNLLCWNA-----MMSAYVRNRFWDASLAVFRQMQFAGLNPDAV 451 (899)
Q Consensus 378 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 451 (899)
++.-... -+..+...|.+.|-...|++.+..+.. +.++..+. -+..|...-.++++++.++.|...+++.|..
T Consensus 601 N~mFtHy-Dra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQ 679 (1666)
T KOG0985|consen 601 NDMFTHY-DRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQ 679 (1666)
T ss_pred ccccccc-cHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhH
Confidence 2211111 145667778888888888888877654 11111111 1234455567888999999999888888877
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHH-----------hCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC-------
Q 045600 452 SIISVLSGCSKLDDVLLGKSAHAFSLR-----------KGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST------- 513 (899)
Q Consensus 452 t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 513 (899)
+...+..-|+..=..+...++|+.... .++.-|+.+.-..|.+.++.|++.+..++.++-.-
T Consensus 680 i~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvK 759 (1666)
T KOG0985|consen 680 IVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVK 759 (1666)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHH
Confidence 776666666655444555555554432 24566777778889999999999998888765431
Q ss_pred ------------C------------ChhhH------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----------
Q 045600 514 ------------R------------SSVSW------NTLISRCVQNGAVEEAVILLQRMQKEGVELDMVT---------- 553 (899)
Q Consensus 514 ------------~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---------- 553 (899)
| |.+.| -..|..|.+.-++...-.+...+.. +.-+...
T Consensus 760 NfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD--~dC~E~~ik~Li~~v~g 837 (1666)
T KOG0985|consen 760 NFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD--VDCSEDFIKNLILSVRG 837 (1666)
T ss_pred HHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc--CCCcHHHHHHHHHHHhc
Confidence 1 11111 1123333333222222222211111 1111111
Q ss_pred ---HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhh----------HHHHh--------
Q 045600 554 ---LISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRL----------CLLLF-------- 612 (899)
Q Consensus 554 ---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----------~~~~~-------- 612 (899)
..-+..-+.+.++++....+++..+..|.. |+.++|+|...|....+-.+-.. +-+..
T Consensus 838 q~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 838 QFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred cCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceE
Confidence 122334445555666666677777777754 77788888777765443332110 00000
Q ss_pred ----hcCCCC--------ChhhHHHHHHHHHHcCCHH---HHH--------HHHHHHHHCCCC--CCHhHHHHHHHHhcc
Q 045600 613 ----QMGDKR--------EISLWNAIISVYVQTNKAK---QAV--------AFFTELLGAGLE--PDNVTVLSIISAGVL 667 (899)
Q Consensus 613 ----~~~~~~--------~~~~~~~li~~~~~~g~~~---~A~--------~l~~~m~~~g~~--p~~~t~~~ll~a~~~ 667 (899)
+++... .-..|-...+-+.+..+.+ +.+ .+.++..+-+++ -|+......+.|+..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 000000 0001111111111111111 111 122222222211 122222223333333
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCChhHHH---------------------------HHHHHhHhcCCHHHHHHHHHhcC-
Q 045600 668 INSLNLTHSLMAFVIRKG--LDKHVAVSN---------------------------ALMDSYVRCGNISMARKLFGSLI- 717 (899)
Q Consensus 668 ~~~~~~a~~~~~~~~~~g--~~~~~~~~~---------------------------~li~~~~~~g~~~~A~~~~~~~~- 717 (899)
.+-..+-.++++++.-.. +.-+...-| .+.......+-+++|..+|++..
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc
Confidence 333333333333322110 000000000 01112223333444444444321
Q ss_pred ------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHH
Q 045600 718 ------------------------YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVE 773 (899)
Q Consensus 718 ------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~ 773 (899)
-..+..|..+..+-...|.+.+|++-|-+. -|+..|.-++....+.|.|+
T Consensus 1077 n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1077 NVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 113457999999999999999998776542 36678999999999999999
Q ss_pred HHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 045600 774 QSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMD 853 (899)
Q Consensus 774 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 853 (899)
+-..++...+++.-+|... ..|+-+|++.++..+-.+++. -|+.......+..|...|.++.|.-+|..
T Consensus 1151 dLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN----- 1219 (1666)
T ss_pred HHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----
Confidence 9999999888777777665 458999999999888766653 47888888999999999999998887753
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 854 PENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 854 p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
.+.|..|+..+...|.+..|...-++.
T Consensus 1220 ---vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ---VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456778888888888888887665554
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.6e-08 Score=102.80 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=172.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHH
Q 045600 630 YVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMA 709 (899)
Q Consensus 630 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 709 (899)
+.-.|+...|.+.|+..++....++.. |.-+-.+|....+.++....|++....+.. ++.+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 455688899999999999876444433 777777889999999999999999888655 556666667777778899999
Q ss_pred HHHHHhcCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045600 710 RKLFGSLIY--K-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 710 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~ 785 (899)
..-|++.+. | ++..|-.+.-+..+.++++++...|++..+ -.|+ +..|+.....+..++++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999999873 3 566777777777788999999999999988 4665 468999999999999999999999998843
Q ss_pred C-----CccCcchHHHHHHHH-hhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 045600 786 G-----ISQKMEHYACMVDLL-GRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 786 ~-----~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 854 (899)
. +..++..+..-.-+. .=.+++..|.+++++. ...|... .+.+|...-.++|+.++|++++++...+-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 222232222211111 1248899999999988 6777655 588999999999999999999999987754
No 57
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.30 E-value=4e-06 Score=89.47 Aligned_cols=121 Identities=16% Similarity=0.129 Sum_probs=78.7
Q ss_pred HHHHHHccCCHHHHHHHHHHH---------------HHcCCccCc---chHHHHHHHHhhcCChHHHHHHHHhCCCCCCH
Q 045600 762 VLSACSHAGLVEQSKMVFKSM---------------VEHGISQKM---EHYACMVDLLGRTGHLNEAFIFVKKLPCKPSV 823 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m---------------~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 823 (899)
.|.++|+...|.+|.++-+++ .+..-+.+. .-...-++.+...++|++|+.--++-..+|-.
T Consensus 1245 aida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak~qnykpil 1324 (1636)
T KOG3616|consen 1245 AIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKPIL 1324 (1636)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHHhcccHHHH
Confidence 456777777777777665543 211112221 12234578899999999999988887777766
Q ss_pred HHHHHHH-HHHHhhCCHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhcC--ChHHHHHHHHH
Q 045600 824 SILESLL-GACRIHGNVELGEIISGMLF-EMDPENPGSYVMLHNIYASAG--RWEDAYRVRSC 882 (899)
Q Consensus 824 ~~~~~l~-~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g--~~~eA~~~~~~ 882 (899)
.-|-++. ..+...|+...+..++++-- ..+|.|..+|-.+..-....- +.+||.+-+-.
T Consensus 1325 ~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~eay~e~a~ 1387 (1636)
T KOG3616|consen 1325 DKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEAYHEIAD 1387 (1636)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 6555444 44567899999988887654 346778888877665544443 67777554433
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=1.3e-08 Score=101.54 Aligned_cols=287 Identities=14% Similarity=0.064 Sum_probs=168.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhH
Q 045600 529 NGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLC 608 (899)
Q Consensus 529 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 608 (899)
.|++.+|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688888888888876655433 3445566677778888888888888888775566777778888888889999998866
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC
Q 045600 609 LLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK 688 (899)
Q Consensus 609 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 688 (899)
..-...+.+.++.......++|.+.|++.+...++.+|.+.|+--+...- .+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 66666777788888999999999999999999999999998865543221 00
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSA 765 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 765 (899)
...+|+.+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+++..|+.. ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 11233334443333344444444555554 2345555555556666666666666666666655444411 1112
Q ss_pred HHccCCHHHHHHHHHHHH-HcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHH
Q 045600 766 CSHAGLVEQSKMVFKSMV-EHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
+.+-++.+.-.+..++.. ..+.. +..+..|+..|.+.+.|.+|.+.++.. +..|+...+..+...+.+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 233344433333333333 11111 133344444444444444444444433 34444444444444444444444444
Q ss_pred HHHHHHH
Q 045600 844 IISGMLF 850 (899)
Q Consensus 844 ~~~~~~~ 850 (899)
+..+..+
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 4444333
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4.6e-09 Score=101.26 Aligned_cols=299 Identities=11% Similarity=0.134 Sum_probs=148.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCChh
Q 045600 528 QNGAVEEAVILLQRMQKEGVEL-DMVTLISFLPNLNKNGNIKQGMVIHGYAIKTG-CVAD--VTFLNALITMYCNCGSTN 603 (899)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~ 603 (899)
-+.+.++|.++|-+|.+ ..| +..+-.++.+-+.+.|.+|.|+.++..+.++. ...+ ....-.
T Consensus 47 Ls~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q------------ 112 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ------------ 112 (389)
T ss_pred hhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH------------
Confidence 35677888888888877 333 33445566777788888888888888776642 1111 111122
Q ss_pred hhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045600 604 DGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIR 683 (899)
Q Consensus 604 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 683 (899)
|..-|...|-+|.|.++|..+.+.|. --......|+..|-...+|++|.++-.++.+
T Consensus 113 ----------------------L~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 113 ----------------------LGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred ----------------------HHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33334444555555555555544331 1112222333333333333333333333333
Q ss_pred hCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHH
Q 045600 684 KGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLGV 762 (899)
Q Consensus 684 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 762 (899)
.+.++... .+.. .|.-+...+....+.++|..++++..+ ..|+.+ .-..+
T Consensus 170 ~~~q~~~~---eIAq------------------------fyCELAq~~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~l 220 (389)
T COG2956 170 LGGQTYRV---EIAQ------------------------FYCELAQQALASSDVDRARELLKKALQ--ADKKCVRASIIL 220 (389)
T ss_pred cCCccchh---HHHH------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHh--hCccceehhhhh
Confidence 32221100 0111 122233334444555555555555555 344333 22233
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHH
Q 045600 763 LSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVEL 841 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 841 (899)
.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++.++ ...+.......+...-....-.+.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHH
Confidence 3355556666666666666655444433455556666666666666666666555 444444444444444333444444
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHH---hcCChHHHHHHHHHHHhCCCccCCC
Q 045600 842 GEIISGMLFEMDPENPGSYVMLHNIYA---SAGRWEDAYRVRSCMKRSRLKKVPG 893 (899)
Q Consensus 842 a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~eA~~~~~~~~~~~~~~~~~ 893 (899)
|.....+-+...|.-.. .+.|+..-. ..|+..+.+-.++.|....++..|.
T Consensus 301 Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 301 AQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 55555555555555332 333333222 2355666777777777666666554
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=6e-12 Score=90.29 Aligned_cols=50 Identities=34% Similarity=0.565 Sum_probs=48.3
Q ss_pred CCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhc
Q 045600 211 ADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTR 260 (899)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 260 (899)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=7.4e-12 Score=89.83 Aligned_cols=50 Identities=24% Similarity=0.463 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhcc
Q 045600 110 PCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSS 159 (899)
Q Consensus 110 ~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 159 (899)
||+++||++|++|++.|++++|+++|++|.+.|+.||.+||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=6e-10 Score=106.98 Aligned_cols=225 Identities=14% Similarity=0.089 Sum_probs=180.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhc
Q 045600 624 NAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRC 703 (899)
Q Consensus 624 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 703 (899)
+.+..+|.+.|.+.+|..-|+.-.+.. | -+.+|-.|...|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~-----------------------------------~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--P-----------------------------------HPDTFLLLSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--C-----------------------------------chhHHHHHHHHHHHh
Confidence 456667777777777777776665543 2 333445566677777
Q ss_pred CCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHH
Q 045600 704 GNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVF 779 (899)
Q Consensus 704 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~ 779 (899)
.+...|+.++.+.. .| |+.....+...+-..++.++|.++++...+ ..| |......+...|.-.++++-|+.+|
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHH
Confidence 77888888887766 34 444445566777788899999999999987 566 5567777778889999999999999
Q ss_pred HHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 045600 780 KSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL---PCKPS--VSILESLLGACRIHGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 780 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 854 (899)
+++.+.|+. ++..|+.+.-++.-.+++|-++.-|++. .-.|+ ...|..+.......||+..|.+.++.++..+|
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 999988854 6788999999999999999999888876 23343 45799999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 855 ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 855 ~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
++..++++|+.+-.+.|+.++|..+++......+
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999876443
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=1e-06 Score=93.87 Aligned_cols=343 Identities=16% Similarity=0.115 Sum_probs=156.3
Q ss_pred hcCChHHHHHHhccCC-CCCc-eeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHH
Q 045600 194 KKGEMLTARLLFDQIP-LADL-VSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLH 271 (899)
Q Consensus 194 ~~g~~~~A~~~f~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 271 (899)
..|+++.|..+++... -||. ..|-.+-..-...|+.--|.++|..+ |++.+++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai----------------------~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI----------------------GDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH----------------------HHHHHHHHHH
Confidence 3577777777776543 3333 34666666666666666666655443 3344444444
Q ss_pred HHHH-------HhCCC-CCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 045600 272 GFTI-------KSGYL-FDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRA 343 (899)
Q Consensus 272 ~~~~-------~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (899)
+-.. +.|-. .+-+-..+++.+. ..++.+|+.+|-+- | .-...|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail--~kkfk~ae~ifleq---n--~te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAIL--EKKFKEAEMIFLEQ---N--ATEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHH--HhhhhHHHHHHHhc---c--cHHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 3321 11211 1112222333222 23566676666432 1 1123455555566677766654432
Q ss_pred CCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC--CCCCcchHHHH
Q 045600 344 EMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQI--PNRNLLCWNAM 421 (899)
Q Consensus 344 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l 421 (899)
|.+.-...-.+-++++...|.-+.|-++- .+..---+.|..|.|.|.+..|.+....- ...|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 22211122233444444444444333221 11122235677888888887776654322 22455555666
Q ss_pred HHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHH-HHHHHHHHcCCC
Q 045600 422 MSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVL-NALLMFYSDGGQ 500 (899)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~ 500 (899)
..++.+..-++.|-++|+++.. || ..+..+.+..-+-.|.++-+.. ++...... ..--+.+...|+
T Consensus 655 a~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 6666666667777777766542 21 1122222222222222222111 11000000 011112223344
Q ss_pred hHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 045600 501 FSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKT 580 (899)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 580 (899)
++.|..-|-+.. ..-..|.+......|.+|+.+++.++.. +....-|..+...|+..|+++.|.++|-+.
T Consensus 722 ~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 444444432211 1111233444555666666666665552 222333455555666666666666665432
Q ss_pred CCCCChhHHHHHHHHHHhcCChhhhh
Q 045600 581 GCVADVTFLNALITMYCNCGSTNDGR 606 (899)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~g~~~~a~ 606 (899)
..++-.|++|.+.|+|++|.
T Consensus 792 ------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHH
Confidence 12344455555655555555
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=1.9e-08 Score=100.31 Aligned_cols=257 Identities=11% Similarity=0.074 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 045600 621 SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSY 700 (899)
Q Consensus 621 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 700 (899)
..|..-..+--+.|+.+.+-.++.+..+.--.++...+.+........|+++.|..-.+.+.+.+.. .+.........|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHH
Confidence 3344444455566677777777777766532444444555555567777777777777777776655 455667777888
Q ss_pred HhcCCHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 045600 701 VRCGNISMARKLFGSLIYK-----------DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHA 769 (899)
Q Consensus 701 ~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 769 (899)
.+.|++.+...++.++.+. ...+|+.+++-....+..+.-...|++...+ .+-++..-..++.-+...
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence 8888888888888777532 1246777777777777666666677776553 455566677788888999
Q ss_pred CCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHH
Q 045600 770 GLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISG 847 (899)
Q Consensus 770 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 847 (899)
|+.++|.++.++..+++..|+ ...++.. .+-++...-.+..++. ..+.++..+.+|+..|.+++.+.+|...++
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~-l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR---LCRLIPR-LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred CChHHHHHHHHHHHHhccChh---HHHHHhh-cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999998887776 2223332 3445544444444433 223344778999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 848 MLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 848 ~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.+++..|+ ...+..++++|.+.|+..+|..++++..
T Consensus 353 aAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 353 AALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99988887 7889999999999999999999999876
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=5e-09 Score=118.76 Aligned_cols=245 Identities=11% Similarity=0.002 Sum_probs=179.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHhc---------ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC
Q 045600 635 KAKQAVAFFTELLGAGLEPDNV-TVLSIISAGV---------LINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCG 704 (899)
Q Consensus 635 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 704 (899)
..++|..+|++..+. .|+.. .+..+..++. ..++.++|...+++..+.... +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 356788888888775 35433 3333332221 334578888888888877654 6667778888889999
Q ss_pred CHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHH
Q 045600 705 NISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQSKMVFK 780 (899)
Q Consensus 705 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A~~~~~ 780 (899)
++++|...+++.. .| +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999986 44 566888899999999999999999999998 677543 34445556777899999999999
Q ss_pred HHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 781 SMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSI-LESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 781 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
++.+...+-++..+..+..+|...|+.++|.+.++++ ...|+... +..+...+...| +.|...++.+++..-..+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 9875432223456777889999999999999999987 45555444 445555666666 4777777777776644444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
....+..+|.-.|+.+.|.-+ +++.+.+
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 445588888889998888777 7776544
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=7.9e-09 Score=111.00 Aligned_cols=228 Identities=19% Similarity=0.166 Sum_probs=154.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHh-----CC-CCChh-HHHHHHHHhHhcCCHHHHHHHHHhcC--------CCC-
Q 045600 657 TVLSIISAGVLINSLNLTHSLMAFVIRK-----GL-DKHVA-VSNALMDSYVRCGNISMARKLFGSLI--------YKD- 720 (899)
Q Consensus 657 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~- 720 (899)
+...+...|...|+++.|..+++...+. |. .|.+. +.+.+...|...+++++|..+|+++. ..+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555555554433 21 11221 22346677888888888888887774 112
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCC-CChh-HHHHHHHHHHccCCHHHHHHHHHHHH---HcCCc
Q 045600 721 --AFSWSVMINGYGLYGDGEAALELFKQMQLS-----GVR-PNEI-TYLGVLSACSHAGLVEQSKMVFKSMV---EHGIS 788 (899)
Q Consensus 721 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~ 788 (899)
..+++.|..+|.+.|++++|...+++..+- |.. |... .++.+...|+..+++++|..+++... ..-+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 346777778888888888887777665541 222 2333 35566667889999999999988766 21122
Q ss_pred cC----cchHHHHHHHHhhcCChHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-
Q 045600 789 QK----MEHYACMVDLLGRTGHLNEAFIFVKKL-------PC--KPS-VSILESLLGACRIHGNVELGEIISGMLFEMD- 853 (899)
Q Consensus 789 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 853 (899)
++ ..+++.|...|...|++++|.++++++ .. .+. ...++.+...|.+.+++..|.+++.......
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 278889999999999999999998876 12 222 3357788888888888888888877766543
Q ss_pred ------CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 854 ------PENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 854 ------p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
|+-..+|-+|+.+|.++||+++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4445678899999999999999999988876
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=6.1e-07 Score=97.01 Aligned_cols=443 Identities=12% Similarity=0.050 Sum_probs=259.6
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 045600 378 NGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPN---RNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSII 454 (899)
Q Consensus 378 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 454 (899)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..+...|.-..|..+++.-....-.|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888999999999999999999999998764 345578999999999999999999988765543335444433
Q ss_pred HH-HHHhc-cCCChHHHHHHHHHHHHhC--C--CCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 045600 455 SV-LSGCS-KLDDVLLGKSAHAFSLRKG--I--VSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQ 528 (899)
Q Consensus 455 ~l-l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 528 (899)
.+ -..|. +.+.++++..+-..++... . ......+..+.-+|+..- ...+..+ -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------~~a~~~s--------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------RQANLKS--------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------hcCCChH--------HH
Confidence 33 33343 4466677666655555411 0 001111111111111000 0000000 01
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhh
Q 045600 529 NGAVEEAVILLQRMQKE-GVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRL 607 (899)
Q Consensus 529 ~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 607 (899)
.....++++.+++..+. +-.|+...|.+ --++..++++.|.+...+..+.+-..+...+..|.-.+...+++.+|..
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 11234566777776653 23344444433 3445566788888888888877666777777777777777788877763
Q ss_pred HH-HHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh
Q 045600 608 CL-LLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGA--GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK 684 (899)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 684 (899)
+. ..+++...+ -.....-+..-..-++.++++.....+... ...|-..+ ++-.........+.-.
T Consensus 535 vvd~al~E~~~N-~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 535 VVDAALEEFGDN-HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLA 602 (799)
T ss_pred HHHHHHHHhhhh-hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccC
Confidence 22 222222211 111111111122245666666665555431 00010000 0111111111111111
Q ss_pred --CCCCChhHHHHHHHHhHhcC---CHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 045600 685 --GLDKHVAVSNALMDSYVRCG---NISMARKLFGSLIYKD------AFSWSVMINGYGLYGDGEAALELFKQMQLSGVR 753 (899)
Q Consensus 685 --g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 753 (899)
...-.+.++..+.......+ ..+....-+...+.|+ ...|......+.+.++.++|...+.+... +.
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~ 680 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--ID 680 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cc
Confidence 11112223333322222111 1111111111112233 23566777788889999999988888876 56
Q ss_pred C-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHH--HHHhC-CCCC-CHHHHH
Q 045600 754 P-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFI--FVKKL-PCKP-SVSILE 827 (899)
Q Consensus 754 p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~ 827 (899)
| ....|......+...|..++|.+.|.... -+.|+. ....++..++.+.|+..-|.. ++..+ ...| ++..|.
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 6 45577777778889999999999999888 445654 788899999999998777766 77776 5555 567899
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
.++..+.+.||.+.|...|+.+.++++.+|.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999987765
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.8e-09 Score=111.81 Aligned_cols=211 Identities=15% Similarity=0.070 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHh-CCCC--ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHH
Q 045600 670 SLNLTHSLMAFVIRK-GLDK--HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALEL 743 (899)
Q Consensus 670 ~~~~a~~~~~~~~~~-g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 743 (899)
..+.+...+..++.. ...| ....|..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 444455555555543 2222 23445566666777777777777777665 23566777777777777777777777
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCC
Q 045600 744 FKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCK 820 (899)
Q Consensus 744 ~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 820 (899)
|++..+ +.|+ ..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|.+.+++. ...
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 777776 5664 346666666777777777777777777743 333322222222334556777777777544 222
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 821 PSVSILESLLGACRIHGNVELGEIISGMLF-------EMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
|+...+ .+ .....|+...+. .++.+. ++.|..+.+|+.||.+|.+.|++++|+..|++..+.++
T Consensus 197 ~~~~~~-~~--~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGW-NI--VEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHH-HH--HHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222111 11 222234333221 222222 34455666777788888888888888888777776554
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-07 Score=98.79 Aligned_cols=481 Identities=11% Similarity=0.057 Sum_probs=224.3
Q ss_pred cCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhh--cCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 045600 261 LGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDS--LLEKNASVWNAMISAYTQSKKFFEAFEIFR 338 (899)
Q Consensus 261 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 338 (899)
..++..|.-+-+.+...+ .|+.-.--+..+|.-.|+++.|..+... +.+.|..+.......+.+..++++|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444 3333334455667777788888777653 456788888888888888888888888887
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchH
Q 045600 339 QMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCW 418 (899)
Q Consensus 339 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 418 (899)
.-. +.-+...|-..=. ++.-+...+.+.+..-.+. ..+-.--..|......++|...|.+....|+..|
T Consensus 107 ~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~es------sic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 107 RGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLES------SICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred ccc---hhhcchhhcchhh--hceeccCcccccccccchh------ceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 321 0111111100000 0000011111000000000 1111111234445567777777777666666555
Q ss_pred HHHHHHHHHCC-ChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHh-ccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 045600 419 NAMMSAYVRNR-FWDASLAVFRQMQFA-GLNPDAVSIISVLSGC-SKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFY 495 (899)
Q Consensus 419 ~~li~~~~~~g-~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 495 (899)
.++..--..+= -.++-.++|+.+.-. -.+-+......+.... ++..+-+ ....-....-.+...+..+..+..+-+
T Consensus 176 Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~dll~~~ad~~ 254 (611)
T KOG1173|consen 176 EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENLDLLAEKADRL 254 (611)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcHHHHHHHHHHH
Confidence 54433222110 111222222211000 0011111111111111 0000000 000000011123445666666667777
Q ss_pred HcCCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHH
Q 045600 496 SDGGQFSYAFTLFHRMSTR---SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMV 572 (899)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 572 (899)
-..+++.+..++++...+. ....+..-|.++...|+..+-..+=.+|.+. .+-...+|.++.--|...|+..+|.+
T Consensus 255 y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 7777888888877777653 3444555566777777777777776777663 33346677777777777777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 045600 573 IHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLE 652 (899)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 652 (899)
+|.+.......- ...|-.+...|+-.|.-+.|...+....+..+..-..+--+.--|.+.++.+.|...|.+... +.
T Consensus 334 y~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~ 410 (611)
T KOG1173|consen 334 YFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IA 410 (611)
T ss_pred HHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cC
Confidence 777665432211 134555556666666666665443332222222111122223345555666666666655544 23
Q ss_pred CCH-hHHHHHHHHhcccCCHHHHHHHHHHHHHh--CCCC----ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHH
Q 045600 653 PDN-VTVLSIISAGVLINSLNLTHSLMAFVIRK--GLDK----HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAF 722 (899)
Q Consensus 653 p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 722 (899)
|+. ..++-+--..-..+.+.+|..+|+..... ...+ ...+++.|...|.+.+++++|+..+++.. +.|..
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 332 22222222233344555555555544321 0000 12234444445555555555555555443 33444
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLG 761 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 761 (899)
++.++.-.|...|+++.|+..|.+... +.||..+-..
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 455554455555555555555554443 4444433333
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.6e-09 Score=102.92 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=176.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCCh--hHHHHHHHHhHhcCCHHH
Q 045600 632 QTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK-GLDKHV--AVSNALMDSYVRCGNISM 708 (899)
Q Consensus 632 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~--~~~~~li~~~~~~g~~~~ 708 (899)
-.++.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|.++.|+.+.+-+.++ +.+-+. ...-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578999999999998842 223334455666778888999999988888876 443322 233455677888888899
Q ss_pred HHHHHHhcCC-C--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHH
Q 045600 709 ARKLFGSLIY-K--DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE----ITYLGVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 709 A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l~~~~~~~g~~~~A~~~~~~ 781 (899)
|+.+|..+.. + -......|+..|-...+|++|++.-+++...+-.+.. .-|.-|...+....++++|..++++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999888875 3 2346677888888888899999888888886655543 2366666677777888888888888
Q ss_pred HHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 782 MVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV--SILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 782 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
..+.. +.....-..+.+.+...|+++.|++.++.. ...|+. .+...|..+|...|+.+++..++.++.+..+. +.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~ 283 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-AD 283 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-cc
Confidence 87543 122244445778888888888888888877 455553 35677888888888888888888888887776 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
....+...-....-.++|..++.+-.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44555555555544566666555433
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.5e-07 Score=94.96 Aligned_cols=181 Identities=18% Similarity=0.166 Sum_probs=116.2
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCC-HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHc
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKD-AFSWSVMINGYG--LYGDGEAALELFKQMQLSGVRPNE--ITYLGVLSACSH 768 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l~~~~~~ 768 (899)
++++.+|. +..+.+.++....+... ...+.+++..+. +.....+|.+++...-+ -.|.. ......++....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 34444443 44556666666666222 223333333322 22246777777777665 34533 345555567778
Q ss_pred cCCHHHHHHHHH--------HHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHH
Q 045600 769 AGLVEQSKMVFK--------SMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--------PCKPS-VSILESLLG 831 (899)
Q Consensus 769 ~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~ 831 (899)
+|+++.|.+++. .+.+.+..| .+...++..+.+.+..+.|.+++.+. ...+. ...+..+..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 899999999888 555445444 45566778888888776666666554 12222 223455556
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045600 832 ACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRS 881 (899)
Q Consensus 832 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~ 881 (899)
.-.++|+.++|...++.+.+.+|++...+..+.-+|.+.. .+.|..+-+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 6678899999999999999999999999999999998875 455554433
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=5.8e-06 Score=87.49 Aligned_cols=537 Identities=13% Similarity=0.131 Sum_probs=305.0
Q ss_pred CCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHhhHHHHHH
Q 045600 279 YLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRA-EMQPDLVTFVSIIP 357 (899)
Q Consensus 279 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~ 357 (899)
..|+...|-.+-++ ++.+.....+|+ ..|-..+.-+.++|+...-...|+..... .+.--...|...|.
T Consensus 77 ~~~T~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~ 146 (835)
T KOG2047|consen 77 LCPTDPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK 146 (835)
T ss_pred cCCCChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH
Confidence 34444444444443 345555555665 46777777778888888888888776553 23333345666666
Q ss_pred HhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc----------chHHHHHHHHHH
Q 045600 358 SCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNL----------LCWNAMMSAYVR 427 (899)
Q Consensus 358 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~ 427 (899)
.....+-.+.+..++...++. ++....-.|..+++.+++++|.+.+..+...+. ..|..+-...++
T Consensus 147 Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~ 222 (835)
T KOG2047|consen 147 FVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQ 222 (835)
T ss_pred HHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHh
Confidence 666666666666666555543 344456667777777777777777776654332 123332222222
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCC--CCc--HhHHHHHHHHHHcCCChHH
Q 045600 428 NRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGI--VSN--LDVLNALLMFYSDGGQFSY 503 (899)
Q Consensus 428 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~ 503 (899)
+-+.-..+ . .+.+++.|+ -+| -..|++|.+-|.+.|.++.
T Consensus 223 ~p~~~~sl-----------------------------------n-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 223 NPDKVQSL-----------------------------------N-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred Ccchhccc-----------------------------------C-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 22111111 0 111222222 122 2467788888888888888
Q ss_pred HHHHHhhcCCC--ChhhHHHHHHHHHh----------------cCC------HHHHHHHHHHHHHcC----------CCC
Q 045600 504 AFTLFHRMSTR--SSVSWNTLISRCVQ----------------NGA------VEEAVILLQRMQKEG----------VEL 549 (899)
Q Consensus 504 A~~~~~~~~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~g----------~~p 549 (899)
|.+++++.... .+.-|+.+.++|++ .++ ++-.+.-|+.+...+ ..|
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 88888765442 22233333333322 111 222333344433321 111
Q ss_pred -CHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CCC----CChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCC----
Q 045600 550 -DMVTLISFLPNLNKNGNIKQGMVIHGYAIKT-GCV----ADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKRE---- 619 (899)
Q Consensus 550 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---- 619 (899)
+..+|..- .-...|+..+-...+.++++. .+. .-...|..+.+.|-..|+++.|+ .+|++...-+
T Consensus 347 ~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR---vifeka~~V~y~~v 421 (835)
T KOG2047|consen 347 HNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR---VIFEKATKVPYKTV 421 (835)
T ss_pred ccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH---HHHHHhhcCCccch
Confidence 11222111 122345566666777777654 111 12345778889999999999999 7776655432
Q ss_pred ---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----------------HhHHHHHHHHhcccCCHHHHHHHHH
Q 045600 620 ---ISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPD-----------------NVTVLSIISAGVLINSLNLTHSLMA 679 (899)
Q Consensus 620 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----------------~~t~~~ll~a~~~~~~~~~a~~~~~ 679 (899)
..+|-.....-.++.+++.|+.+.+.....--.|. ...+...++.--..|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 23566666666778889999888777665321111 1123333333344567777788888
Q ss_pred HHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC----CCCHH-HHHHHHHHHHhC---CCHHHHHHHHHHHHHcC
Q 045600 680 FVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI----YKDAF-SWSVMINGYGLY---GDGEAALELFKQMQLSG 751 (899)
Q Consensus 680 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 751 (899)
.++...+. ++.+.-...-.+-...-++++.+++++-+ .|++. .|+..+.-+.+. ..++.|..+|++..+ |
T Consensus 502 riidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 88877554 22222223333445566888999998876 34543 677777665542 368899999999988 7
Q ss_pred CCCChhHHHHHHH--HHHccCCHHHHHHHHHHHHHcCCccCc--chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHH
Q 045600 752 VRPNEITYLGVLS--ACSHAGLVEQSKMVFKSMVEHGISQKM--EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSIL 826 (899)
Q Consensus 752 ~~p~~~t~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 826 (899)
++|...-+-.|+. .=.+-|....|+.++++... ++++.. ..|+..|.--...=-.....++++++ ..-|+...-
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 7775543333333 22356888889999998764 333322 55655554332222222334455554 344666554
Q ss_pred HHHH---HHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCh
Q 045600 827 ESLL---GACRIHGNVELGEIISGMLFEMDPE--NPGSYVMLHNIYASAGRW 873 (899)
Q Consensus 827 ~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~ 873 (899)
...+ ..-.+-|.++.|..++.-.-+..++ ++..|...-.-=.+.|+-
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 4444 3446788999999998888888765 566777777777788883
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.7e-07 Score=89.31 Aligned_cols=262 Identities=13% Similarity=0.053 Sum_probs=157.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH----HHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHH
Q 045600 618 REISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVT----VLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVS 693 (899)
Q Consensus 618 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 693 (899)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ |..|+ .+.|+.+....+...+....-. +...|
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~~-ta~~w 303 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKVKY-TASHW 303 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhhhc-chhhh
Confidence 36666667777777777777777777776653 344332 32222 3456666666666555544211 11222
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHcc
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIY---KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHA 769 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~ 769 (899)
-.-........++..|+.+-++.+. .++..|-.-...+...|++++|.-.|+..+. +.| +...|..|+..|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhh
Confidence 2222333445667777777776662 2344454445566777777777777777766 666 556777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCccCcchHHHHH-HHHh-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHH
Q 045600 770 GLVEQSKMVFKSMVEHGISQKMEHYACMV-DLLG-RTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEII 845 (899)
Q Consensus 770 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~ 845 (899)
|++.+|...-+...+ -+..+..+...+. ..+. ..---++|..++++. ...|+.. ....+...|...|..+.++.+
T Consensus 382 ~~~kEA~~~An~~~~-~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 382 KRFKEANALANWTIR-LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred chHHHHHHHHHHHHH-HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 777777766655542 1223344554442 2222 222345677777665 6666643 455666667777777777777
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 846 SGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 846 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
+++.+...|+ ...+..|++++...+.+.+|.+.|....+.+++
T Consensus 461 Le~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 461 LEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 7777776665 556677777777777777777777776665554
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=1.2e-06 Score=92.85 Aligned_cols=446 Identities=12% Similarity=0.050 Sum_probs=278.9
Q ss_pred HCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHH
Q 045600 427 RNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFT 506 (899)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (899)
..+++...++..+...+. ..-...|....--.+...|+.++|....+..++.. .-+...|..+.-.+-...++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 356677777777766652 22222344333334566788888887777666633 2344566666666666788999999
Q ss_pred HHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-
Q 045600 507 LFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVIHGYAIKTG- 581 (899)
Q Consensus 507 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~- 581 (899)
.|..... .|...|.-+--.-++.++++...+.-.+..+ ..|+ ...|..+..+..-.|+...|..+.+...+..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9987654 4677888777777888888888888777776 4554 5667888888888999999999999988865
Q ss_pred CCCChhHHHHHHH------HHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 045600 582 CVADVTFLNALIT------MYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDN 655 (899)
Q Consensus 582 ~~~~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 655 (899)
-.|+...+.-... ...+.|..+.|...+...+.........-.+-...+.+.++.++|..++..++..+ ||.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 3566555544332 34566777776622222222222223333455667888999999999999999974 888
Q ss_pred hHHHHHHHHhc-c-cCCHHHHHHHHHHHHHhCC---CCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC-CHHHHHHHHH
Q 045600 656 VTVLSIISAGV-L-INSLNLTHSLMAFVIRKGL---DKHVAVSNALMDSYVRCGNISMARKLFGSLIYK-DAFSWSVMIN 729 (899)
Q Consensus 656 ~t~~~ll~a~~-~-~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~ 729 (899)
..|...+..+. + .+..+....++....+.-. .|-....+ ......-.+...+++..+... =+.++..+..
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 87777666554 2 3333333355555544411 11111111 111111122223333333322 1233444444
Q ss_pred HHHhCCCHHHHHHHHHHHHH----cC---------C-CCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-c
Q 045600 730 GYGLYGDGEAALELFKQMQL----SG---------V-RPNE--ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-E 792 (899)
Q Consensus 730 ~~~~~g~~~~A~~~~~~m~~----~g---------~-~p~~--~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~ 792 (899)
.|-.-...+-..++.-.+.. .| + .|.. .|+..++..+-+.|+++.|..+++..+ +..|+. +
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI--dHTPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--DHTPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--ccCchHHH
Confidence 44332222211222222221 11 1 2333 356667778899999999999999998 557776 7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-------CchhH--H
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPE-------NPGSY--V 861 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~--~ 861 (899)
.|..-.+++...|.+++|..++++. -..||..+....+....+.+..++|.++.-+....+.+ -.-.| .
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 7777889999999999999999988 34466655557777788899999999988877765532 11123 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 045600 862 MLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 862 ~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.=|.+|.++|++.+|++=|..+.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHH
Confidence 34678999999999987776653
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=3.7e-09 Score=97.38 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=109.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLL 801 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 801 (899)
...|.-+|...|+...|.+-+++.++ ..|+. .+|..+...|.+.|..+.|.+.|++.. .+.|+. .+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl--sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL--SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH--hcCCCccchhhhhhHHH
Confidence 44556667777777777777777776 55644 366666677777777777777777766 334444 6667777777
Q ss_pred hhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH
Q 045600 802 GRTGHLNEAFIFVKKLPCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAY 877 (899)
Q Consensus 802 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~ 877 (899)
|..|++++|...|++.-..|. +.+|.+++.+..+.|+.+.|...+++.++.+|+++.....++...+..|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777776633332 3456667666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCC
Q 045600 878 RVRSCMKRSRL 888 (899)
Q Consensus 878 ~~~~~~~~~~~ 888 (899)
-+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777665443
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=2.1e-06 Score=95.16 Aligned_cols=354 Identities=12% Similarity=0.058 Sum_probs=198.9
Q ss_pred HHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 045600 503 YAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIK 579 (899)
Q Consensus 503 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 579 (899)
.|...+++..+ .+...||.|.-. ...|++.-|...|-+-... .+....+|..+...+....+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45566655443 567777776555 5556676666666555442 233566777777777888888888888877765
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhc--------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 045600 580 TGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQM--------GDKREISLWNAIISVYVQTNKAKQAVAFFTELLGA-- 649 (899)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-- 649 (899)
..+. +...|--........|+.-++. .+|.. +..++..-|-.........|+.++-+..-+++-..
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~---~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERL---ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHH---HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 4322 2222222222333445444444 22221 22234444444444445556655444433333221
Q ss_pred -------CCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCChhHHH----HHHHHhHhcCCHHHHHHHHHhcC
Q 045600 650 -------GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK-GLDKHVAVSN----ALMDSYVRCGNISMARKLFGSLI 717 (899)
Q Consensus 650 -------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~ 717 (899)
|.+-+...|.......-+.+.+..+.....+.+.. ...-+...|+ .....++..|.++.|...+....
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 34445566766666666666676666666655433 2233344444 33455666788887777666554
Q ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcc
Q 045600 718 -YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE----ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKME 792 (899)
Q Consensus 718 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 792 (899)
..+..+-..-+.. .-.|+++++++.|++... +.-+. .....++-....++.-+.|...+-+..... +|+..
T Consensus 1035 ~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~ 1110 (1238)
T KOG1127|consen 1035 MEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQAS 1110 (1238)
T ss_pred hhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchh
Confidence 2222222222222 335799999999999987 33322 233444445567788888888877776432 44554
Q ss_pred hHHHHHHHHhhcCChHH---HHHHHHhCC-----CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 045600 793 HYACMVDLLGRTGHLNE---AFIFVKKLP-----CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLH 864 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~---A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 864 (899)
..-.+...+.-..+-.. +.+-+.+.. ..|... ... ..+...|+-....+.+++..-.+|.+|..|..|.
T Consensus 1111 sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~l-l~e--~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1111 SLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGL-LKE--LIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhH-HHH--HHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 44444444433333222 222233321 112221 112 2345778888889999999999999999999999
Q ss_pred HHHHh
Q 045600 865 NIYAS 869 (899)
Q Consensus 865 ~~y~~ 869 (899)
.-|.+
T Consensus 1188 vrya~ 1192 (1238)
T KOG1127|consen 1188 VRYAQ 1192 (1238)
T ss_pred HHHHH
Confidence 76664
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.3e-08 Score=115.52 Aligned_cols=209 Identities=13% Similarity=0.041 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhH---------hcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCH
Q 045600 670 SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYV---------RCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDG 737 (899)
Q Consensus 670 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~ 737 (899)
+.+.|...+++..+..+. +...|..+..++. ..+++++|...+++.. .| +...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 457888888888776544 3445555554443 2345899999999887 33 677888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHH
Q 045600 738 EAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVK 815 (899)
Q Consensus 738 ~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 815 (899)
++|+..+++..+ +.|+ ...+..+..++...|++++|...++++.+. .|+. ..+..++..+...|++++|.+.++
T Consensus 355 ~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999998 6785 457888888999999999999999999954 3443 333445556777899999999998
Q ss_pred hC--CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 816 KL--PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 816 ~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+. ...|+ +..+..+...+...|+.++|...++++....|.+......++..|...| ++|...++++.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 87 23454 4456777788889999999999999999988998889999999999988 488888877764
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.2e-07 Score=89.08 Aligned_cols=415 Identities=12% Similarity=0.030 Sum_probs=271.5
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHc
Q 045600 421 MMSAYVRNRFWDASLAVFRQMQFAG---LNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSD 497 (899)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 497 (899)
+.....+...+..|.+-|....+.. ..|...+..++=..++..++. ..-.-.+..|-.
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~-------------------e~~r~~aecy~~ 109 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDA-------------------EQRRRAAECYRQ 109 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccH-------------------HHHHHHHHHHHH
Confidence 3344444556666676666665432 334444444433333333333 333345566777
Q ss_pred CCChHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCC-HHHHHHHHH--------------HHHHcC---------------
Q 045600 498 GGQFSYAFTLFHRMSTR-SSVSWNTLISRCVQNGA-VEEAVILLQ--------------RMQKEG--------------- 546 (899)
Q Consensus 498 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~-~~~A~~~~~--------------~m~~~g--------------- 546 (899)
.++-++|...+...+.. ...--|.|+.-+.++|- -.++.--+. -..+.+
T Consensus 110 ~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~ 189 (564)
T KOG1174|consen 110 IGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAAT 189 (564)
T ss_pred HccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhee
Confidence 78888898888888764 33334444444444432 112211111 111111
Q ss_pred CCCCHHHHHHHHHH--HhcCCChHHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhH
Q 045600 547 VELDMVTLISFLPN--LNKNGNIKQGMVIHGYAIK-TGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLW 623 (899)
Q Consensus 547 ~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 623 (899)
++|...+...-+.+ .+..++-..+...+-.+.. .-++.++.....+.+.+...|+.++|. ..|++...-|+.+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~---~~Fe~~~~~dpy~i 266 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAE---DIFSSTLCANPDNV 266 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHH---HHHHHHhhCChhhh
Confidence 23332333333333 3334555555555544444 456678888999999999999999999 66666544433332
Q ss_pred H---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 045600 624 N---AIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSY 700 (899)
Q Consensus 624 ~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 700 (899)
. ...-.+.+.|+.++...+...+....- -....|-.-....-...+++.|+.+-++.++.... +...|-.-..++
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHH
Confidence 2 223345678888888888887766421 11122222223334567888899888888776544 444444455778
Q ss_pred HhcCCHHHHHHHHHhcC--C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHH-HHHH-ccCCHHH
Q 045600 701 VRCGNISMARKLFGSLI--Y-KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVL-SACS-HAGLVEQ 774 (899)
Q Consensus 701 ~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~-~~~~-~~g~~~~ 774 (899)
...++.++|.-.|+..+ . -+..+|..|+.+|...|++.+|.-+-+.... .-| +..+...+. ..|. ....-++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHH
Confidence 88999999999998876 4 3778999999999999999999988877665 344 455666553 3333 3445688
Q ss_pred HHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 045600 775 SKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 775 A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 852 (899)
|..+++.-. .+.|+- .....+...+...|+.++++.++++. ...||......|+..+...+.+.+|...|..++.+
T Consensus 423 AKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 423 AKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999866 345554 56677888899999999999999987 78899999999999999999999999999999999
Q ss_pred CCCCchhHHHH
Q 045600 853 DPENPGSYVML 863 (899)
Q Consensus 853 ~p~~~~~~~~l 863 (899)
+|++..+...|
T Consensus 501 dP~~~~sl~Gl 511 (564)
T KOG1174|consen 501 DPKSKRTLRGL 511 (564)
T ss_pred CccchHHHHHH
Confidence 99988777665
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.07 E-value=4.6e-08 Score=98.60 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=118.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
....+..+...+...|++++|.+.+++..+.. |+ +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~ 73 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALAL 73 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHH
Confidence 34566677777777788888877777776642 32 2233344455
Q ss_pred HhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHH
Q 045600 699 SYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQ 774 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~ 774 (899)
.+...|++++|.+.+++.. +.+...+..+...+...|++++|++.+++..+....| ....+..+...+...|++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 5555566666666665554 2234455566666666667777777776666532223 23345555556667777777
Q ss_pred HHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 045600 775 SKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC-KPSVSILESLLGACRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 775 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 852 (899)
|...+++..+.. +.+...+..++..+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+.+.
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777777766432 122355666777777777777777776665 22 233444555566666777777777776666554
Q ss_pred C
Q 045600 853 D 853 (899)
Q Consensus 853 ~ 853 (899)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.3e-06 Score=85.36 Aligned_cols=144 Identities=12% Similarity=0.052 Sum_probs=67.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHhccCCC
Q 045600 390 LLSMYAKLGNIDSAKFLFDQIPN---RNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSII-SVLSGCSKLDD 465 (899)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~ 465 (899)
+..++.+.|++++|...+..+.+ ++...|-.+.-++.-.|.+.+|..+-.+. |+..... .++...-+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence 34455666666666666655543 23344444555555556666665543332 3322222 23333334455
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCC--ChhhHHHH-HHHHHhcCCHHHHHHHHHHH
Q 045600 466 VLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTR--SSVSWNTL-ISRCVQNGAVEEAVILLQRM 542 (899)
Q Consensus 466 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 542 (899)
-++-..+++.+... ..---+|..+.--.-.+.+|.+++.++... .-...|.- .-+|.+..-++-+.++++--
T Consensus 137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 44444444433321 111222333333333556667776666542 23333332 23455555566666666555
Q ss_pred HH
Q 045600 543 QK 544 (899)
Q Consensus 543 ~~ 544 (899)
.+
T Consensus 212 L~ 213 (557)
T KOG3785|consen 212 LR 213 (557)
T ss_pred HH
Confidence 44
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=6.2e-06 Score=80.78 Aligned_cols=180 Identities=11% Similarity=0.043 Sum_probs=90.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCC---cchHHH-HHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCh
Q 045600 391 LSMYAKLGNIDSAKFLFDQIPNRN---LLCWNA-MMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDV 466 (899)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 466 (899)
++-+....++..|+.+++--...+ ....+. +..++.+.|++++|+..+.-+.+.. .|+......+..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 455566677888887766544211 112222 3355667788888888887776643 34444444444444445666
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045600 467 LLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEG 546 (899)
Q Consensus 467 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 546 (899)
.+|+++-... +.++-....|....-+.++-++-..+-+.+... ..---++.+.....-.+++|++++++....
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 6666654432 112222233334444455544444444433321 122223333334444567777777776652
Q ss_pred CCCCHHHHHHHH-HHHhcCCChHHHHHHHHHHHH
Q 045600 547 VELDMVTLISFL-PNLNKNGNIKQGMVIHGYAIK 579 (899)
Q Consensus 547 ~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~ 579 (899)
.|+-...+.-+ -++.+..-++-+.++++--.+
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 34444443333 234455555555555554443
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.3e-06 Score=88.64 Aligned_cols=438 Identities=14% Similarity=0.116 Sum_probs=246.0
Q ss_pred HHHhhhcCCChhhHHHHHhhcCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCc
Q 045600 289 LISMYAGDLDLSTARKLFDSLLE---KNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCENYCSF 365 (899)
Q Consensus 289 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 365 (899)
=++.+.+.|++++|.+..+++.. .+...+..-+-++++.+++++|+.+.+.-... .+++..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~---------- 81 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSF---------- 81 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchh----------
Confidence 35667778888888888777643 35566777777788888888888555432210 011000
Q ss_pred ccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcC
Q 045600 366 QCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAG 445 (899)
Q Consensus 366 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (899)
+---.-+..+.++.|+|...++.....+..+...-...+.+.|++++|+++|+.+.+++
T Consensus 82 ---------------------~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 82 ---------------------FFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ---------------------hHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 00011234578899999999986555565566667778889999999999999998775
Q ss_pred CCC-CHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHcCCChHHHHHHHhhcC--------CC
Q 045600 446 LNP-DAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSN--LDVLNALLMFYSDGGQFSYAFTLFHRMS--------TR 514 (899)
Q Consensus 446 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~ 514 (899)
..- |...-..++.+-... .. ..+......|. ...+-.....+...|++.+|+++++... ..
T Consensus 141 ~dd~d~~~r~nl~a~~a~l-------~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~ 212 (652)
T KOG2376|consen 141 SDDQDEERRANLLAVAAAL-------QV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDE 212 (652)
T ss_pred CchHHHHHHHHHHHHHHhh-------hH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccc
Confidence 332 111122222221111 00 01222222231 2222223345667899999999998772 11
Q ss_pred C-----h-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHhcCCChHH--HHHHHHHHHH
Q 045600 515 S-----S-----VSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISF---LPNLNKNGNIKQ--GMVIHGYAIK 579 (899)
Q Consensus 515 ~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~g~~~~--a~~~~~~~~~ 579 (899)
| . .+---+.-.+-..|+.++|..++...++.. .+|....... |.+.....++-+ ++..++....
T Consensus 213 d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 213 DTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 1 1 112234456778899999999999998863 4454332222 223333222222 1111111110
Q ss_pred -----------hCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCC-hhhHHHHHHHHHH--cCCHHHHHHHHHH
Q 045600 580 -----------TGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKRE-ISLWNAIISVYVQ--TNKAKQAVAFFTE 645 (899)
Q Consensus 580 -----------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~ 645 (899)
..-.-....-+.++.+|... .+.++ +.....+... ...+.+++....+ ...+.+|.+++..
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk--~~q~r---~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALFTNK--MDQVR---ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHH---HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 00011112223444444432 23333 4444443322 3344445443322 2346777777777
Q ss_pred HHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHH--------HHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC
Q 045600 646 LLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMA--------FVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI 717 (899)
Q Consensus 646 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 717 (899)
.-+....-........+......|+++.|.+++. .+.+.+.. +.+...++..+.+.++-+.|..++.+..
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 6665322223344445555778899999999988 44444444 4455778888888887766666666553
Q ss_pred ------CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 045600 718 ------YKD----AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 718 ------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m 782 (899)
.+. ..++.-+...-.++|+-++|..+++++.+ ..| |..+...++.+|++. +++.|..+-..+
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 111 12344444555677899999999999887 444 667888888888776 566776665543
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=3.2e-05 Score=84.08 Aligned_cols=245 Identities=14% Similarity=0.086 Sum_probs=118.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCC----hhHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK-GLDKH----VAVS 693 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~----~~~~ 693 (899)
|+...+--..-++.+.++++|..++-..++ |...+..| ...++.-..++-+.|.-. .-.|+ ....
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 555666666667777788888877766554 22222222 223333333333333322 12222 2234
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH-------------HHHHHHHcCCCCChhHHH
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALE-------------LFKQMQLSGVRPNEITYL 760 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-------------~~~~m~~~g~~p~~~t~~ 760 (899)
..+.+.+.++|.+..|-+-|.+.-.+ -..++++.+.|+.++..- ..+-++......|+.+..
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK 1223 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMK 1223 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHh
Confidence 45566777777777776666554321 123455556666554210 111122223444555555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH-----------HHHH
Q 045600 761 GVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSI-----------LESL 829 (899)
Q Consensus 761 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-----------~~~l 829 (899)
.++..|.+..-++.--..|+...+-. ...|..+-.+ .|-.++|...+.++..+.+..+ +...
T Consensus 1224 ~I~tFYTKgqafd~LanFY~~cAqiE----iee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~ 1296 (1416)
T KOG3617|consen 1224 DIETFYTKGQAFDHLANFYKSCAQIE----IEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQ 1296 (1416)
T ss_pred hhHhhhhcchhHHHHHHHHHHHHHhh----HHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 55555554444443333333222100 1111111111 1233444444444432222221 2222
Q ss_pred HHHHHh-hCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 830 LGACRI-HGNVELGEIISGMLFEMDPE-----NPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 830 ~~~~~~-~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+...+. ..|..+.+.-.+.+++.-.. ....+-.|+..|....+|..|.+.+.+|..
T Consensus 1297 l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1297 LRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 222211 22555555555555543211 234677899999999999999999999985
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=3.5e-06 Score=89.44 Aligned_cols=424 Identities=11% Similarity=0.032 Sum_probs=216.9
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 045600 461 SKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVI 537 (899)
Q Consensus 461 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 537 (899)
...+++..+....+.+++ +.+....+.....-.+...|+-++|......-.. .+.+.|..+.-.+....++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 344566666666666665 3333333333333345567888888887766655 356778887777777888889998
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCC
Q 045600 538 LLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGD 616 (899)
Q Consensus 538 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 616 (899)
.|+.... +.|| ...+.-+----++.++++........+.+.... ....|..+.-++.-.|+...|..+.+.+....
T Consensus 97 cy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877 5554 445554444445555555555444444432211 12233344444444444444443333333222
Q ss_pred C--CChhhHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHhcccCCHHHHHHHHHHHHHhCCC
Q 045600 617 K--REISLWNAII------SVYVQTNKAKQAVAFFTELLGAGLEPDNVTVL-SIISAGVLINSLNLTHSLMAFVIRKGLD 687 (899)
Q Consensus 617 ~--~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 687 (899)
. ++...+.... ......|..++|++.+.+-... ..|...+. .-..-+.+.+++++|..++..++...+.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 1 2333222211 1122333344444433332221 11111111 1111233344444444444444443322
Q ss_pred CChhHHHHHHHHhHhcCCHHHHH-HHHHhcCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 045600 688 KHVAVSNALMDSYVRCGNISMAR-KLFGSLIY--K-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVL 763 (899)
Q Consensus 688 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 763 (899)
+...|-.+..++.+--+.-++. .+|..... | ....-..=++..-...-.+..-+++..+.+.|+.|--..+.+|
T Consensus 252 -n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL- 329 (700)
T KOG1156|consen 252 -NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL- 329 (700)
T ss_pred -hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH-
Confidence 2222222222232111111111 22222210 0 0000000000000011122233444555555554422222222
Q ss_pred HHHHccCCHHHHHHHHHHHH--------HcC----------CccCc--chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 045600 764 SACSHAGLVEQSKMVFKSMV--------EHG----------ISQKM--EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS 822 (899)
Q Consensus 764 ~~~~~~g~~~~A~~~~~~m~--------~~~----------~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 822 (899)
|-.-...+ +++++. ..| -+|.. .++..++..+-+.|+++.|..+++.. ...|.
T Consensus 330 --yk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 330 --YKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred --HhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 21111111 222222 111 13333 34556888899999999999999987 66666
Q ss_pred HH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc-----cCCCccc
Q 045600 823 VS-ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK-----KVPGFSL 896 (899)
Q Consensus 823 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~-----~~~~~~~ 896 (899)
.. .|..-.+.+...|+.+.|-..++.+.+++-.|..+...-+.-..+.++.++|.++..+..+.|.. .++.|+|
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHH
Confidence 44 45556688889999999999999999999988888888899999999999999999998776642 3467778
Q ss_pred cc
Q 045600 897 VG 898 (899)
Q Consensus 897 ~~ 898 (899)
.+
T Consensus 484 f~ 485 (700)
T KOG1156|consen 484 FQ 485 (700)
T ss_pred Hh
Confidence 65
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=6.4e-07 Score=97.87 Aligned_cols=285 Identities=13% Similarity=0.091 Sum_probs=183.0
Q ss_pred HHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc------cc
Q 045600 595 MYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGV------LI 668 (899)
Q Consensus 595 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~------~~ 668 (899)
.+...|+.++|...++-..................+.+.|+.++|..++.++.+.+ |+...|...+..+. ..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34556666666633333333333344455666777888888888888888888875 66666555555443 12
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHH-HHHHHHHhcCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHH
Q 045600 669 NSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNIS-MARKLFGSLIYKDA-FSWSVMINGYGLYGDGEAALELFKQ 746 (899)
Q Consensus 669 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 746 (899)
...+....+++.+.+.-+..+. ...+.-.+.....+. .+...+..+..+.+ .+++.+-..|....+.+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~--~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDA--PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccc--hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 2466677777777665432221 122211122212222 23344444444433 4555565566655555555555555
Q ss_pred HHHc----C----------CCCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHH
Q 045600 747 MQLS----G----------VRPNE--ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNE 809 (899)
Q Consensus 747 m~~~----g----------~~p~~--~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 809 (899)
.... + -.|.. .++..+.+.|...|++++|++++++.+++ .|+. ..|...+.+|-+.|++++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 5432 1 12233 35566777888999999999999999954 5664 889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CC-------chhHHHHHHHHHhcCChHHHHH
Q 045600 810 AFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDP--EN-------PGSYVMLHNIYASAGRWEDAYR 878 (899)
Q Consensus 810 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~y~~~g~~~eA~~ 878 (899)
|.+.++.. ...+ |..+.+-....+.+.|++++|+..+......+. .. .+.....|.+|.++|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999988 4444 444555666777899999999999988877662 11 2234567899999999999999
Q ss_pred HHHHHHh
Q 045600 879 VRSCMKR 885 (899)
Q Consensus 879 ~~~~~~~ 885 (899)
.|..+.+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 8887653
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=4.5e-05 Score=82.94 Aligned_cols=130 Identities=8% Similarity=0.041 Sum_probs=66.2
Q ss_pred HhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Q 045600 683 RKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGV 762 (899)
Q Consensus 683 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 762 (899)
......++.+...++..|.+..-+|.--.++...-...+.-|..+-. ..|-.++|-+.+.+..+++ -...-|+.|
T Consensus 1212 tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l~~L 1286 (1416)
T KOG3617|consen 1212 TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGLDAL 1286 (1416)
T ss_pred hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHHHHH
Confidence 33555566666666666666555554444444332222211111111 1133445555555554322 111112222
Q ss_pred ----------HHHHH-ccCCHHHHHHHHHHHHHcCCccC----cchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 763 ----------LSACS-HAGLVEQSKMVFKSMVEHGISQK----MEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 763 ----------~~~~~-~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
++... -..+..+...-...|.+...-|+ ...|..+|..+.+.++|..|...++++
T Consensus 1287 q~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el 1356 (1416)
T KOG3617|consen 1287 QEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTEL 1356 (1416)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 22111 11245555555566664444443 267788889999999999999999888
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=5.2e-07 Score=93.46 Aligned_cols=231 Identities=13% Similarity=-0.016 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHHCC-CCCC--HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHH
Q 045600 635 KAKQAVAFFTELLGAG-LEPD--NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARK 711 (899)
Q Consensus 635 ~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 711 (899)
..+.++.-+.++.... ..|+ ...|..+-..+...|+.+.|...++...+..+. +...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555555432 1222 233444444566667777777777666665443 56788889999999999999999
Q ss_pred HHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCc
Q 045600 712 LFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGIS 788 (899)
Q Consensus 712 ~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 788 (899)
.|++.. .| +...|..+...+...|++++|++.+++..+ ..|+..........+...++.++|...+++..... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 999886 34 567888899999999999999999999988 56755422222223456788999999997765322 3
Q ss_pred cCcchHHHHHHHHhhcCChHH--HHHHHHhC-CCCC-----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-Cchh
Q 045600 789 QKMEHYACMVDLLGRTGHLNE--AFIFVKKL-PCKP-----SVSILESLLGACRIHGNVELGEIISGMLFEMDPE-NPGS 859 (899)
Q Consensus 789 p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~ 859 (899)
|+...+ .++. ...|+.++ +++.+.+. ...+ ....|..++..+...|+.++|+..++++++.+|+ ....
T Consensus 197 ~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 197 KEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred ccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 332222 2333 33455433 34333322 2112 2346888999999999999999999999999974 4445
Q ss_pred HHHHHHHHHhcCC
Q 045600 860 YVMLHNIYASAGR 872 (899)
Q Consensus 860 ~~~l~~~y~~~g~ 872 (899)
-+.+..+....++
T Consensus 274 ~~~~~e~~~~~~~ 286 (296)
T PRK11189 274 RYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555544333
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=8.3e-07 Score=95.69 Aligned_cols=243 Identities=16% Similarity=0.165 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChh-hHHHHHHH
Q 045600 551 MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREIS-LWNAIISV 629 (899)
Q Consensus 551 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~ 629 (899)
..+...+...|...|+++.|..+++..++. +-..++ ...+.+. ..+.+...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-----------l~k~~G-----------------~~hl~va~~l~~~a~~ 250 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-----------LEKTSG-----------------LKHLVVASMLNILALV 250 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------HHHccC-----------------ccCHHHHHHHHHHHHH
Confidence 445556777777788888887777766553 000000 0111111 12346677
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCH
Q 045600 630 YVQTNKAKQAVAFFTELLGA---GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNI 706 (899)
Q Consensus 630 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 706 (899)
|...+++++|..+|+++..- ..-++...+ ..+++.|..+|.+.|++
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v-------------------------------a~~l~nLa~ly~~~GKf 299 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAV-------------------------------AATLNNLAVLYYKQGKF 299 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH-------------------------------HHHHHHHHHHHhccCCh
Confidence 88889999999999988652 111222221 22345556666666766
Q ss_pred HHHHHHHHhcC----------CCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHHc
Q 045600 707 SMARKLFGSLI----------YKDAF-SWSVMINGYGLYGDGEAALELFKQMQLS---GVRPNE----ITYLGVLSACSH 768 (899)
Q Consensus 707 ~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~l~~~~~~ 768 (899)
++|...+++.. .+.+. .++.++..|...+++++|+.++++..+. -+.++. .+++.|...|.+
T Consensus 300 ~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 300 AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 66666555442 12222 4566677788888888888888776552 122322 478888889999
Q ss_pred cCCHHHHHHHHHHHHHc----CC--ccC-cchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCCHH-HHHHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEH----GI--SQK-MEHYACMVDLLGRTGHLNEAFIFVKKL--------PCKPSVS-ILESLLGA 832 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~l~~~ 832 (899)
.|++++|.+++++++.. +- .+. ...++.+...|.+.+++++|.++|.+. +..|+.. ++..|...
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 99999999999888722 12 222 367778889999999998888887765 2334443 68899999
Q ss_pred HHhhCCHHHHHHHHHHHHhc
Q 045600 833 CRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~ 852 (899)
|...|++++|+++.+.+...
T Consensus 460 Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999998888743
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=4.5e-07 Score=83.90 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=148.0
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHcc
Q 045600 694 NALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHA 769 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~ 769 (899)
.-|.-.|...|+...|.+-+++.+ .| +..+|..+...|.+.|..+.|.+.|++..+ +.|+ ....|....-+|.+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 345567888888888888888887 33 445788888888888888888888888887 6774 45777778888888
Q ss_pred CCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHH
Q 045600 770 GLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIIS 846 (899)
Q Consensus 770 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 846 (899)
|++++|.+.|++......-+. ..+|..++.+..+.|+.+.|.+.+++. ...|+ +.....+.....+.|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 888888888888884433333 378888888888888888888888876 44443 445677778888888888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 847 GMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 847 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
++.....+.+...+-..+.+-...|+-+-|.++=..+.+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888888888888888888888888888777666654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=5.4e-08 Score=98.93 Aligned_cols=146 Identities=19% Similarity=0.155 Sum_probs=72.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHH----hhcCC
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLL----GRTGH 806 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g~ 806 (899)
+...|++++|++++++- .+.......+..|.+.++++.|.+.++.|.+ +..|. +...++.++ ...++
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchh
Confidence 33445555555544321 2233444444555555555555555555552 22222 222222222 22234
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHH
Q 045600 807 LNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRW-EDAYRVRSCM 883 (899)
Q Consensus 807 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~eA~~~~~~~ 883 (899)
+.+|..+|+++ ...+++.+++.++.+....|++++|+..++++++.+|.++.++.+++-+....|+. +++.++++++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66666666665 33355555555666666666666666666666666666666666666666666665 4445566655
Q ss_pred Hh
Q 045600 884 KR 885 (899)
Q Consensus 884 ~~ 885 (899)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=8e-06 Score=89.43 Aligned_cols=282 Identities=11% Similarity=0.062 Sum_probs=161.6
Q ss_pred HHHHcCCChHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c--
Q 045600 493 MFYSDGGQFSYAFTLFHRMST--RS-SVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLN----K-- 563 (899)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 563 (899)
..+...|++++|++.+++-.. .| ..........+.+.|+.++|..++..+.+. .|+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 445678899999999877654 34 345566678888999999999999999884 577766665555554 1
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 045600 564 NGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFF 643 (899)
Q Consensus 564 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 643 (899)
..+.+....+++.+...-...+.. ..+.-.+.. | ..| -..+...+
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~-g--------------------~~F------------~~~~~~yl 134 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAP--RRLPLDFLE-G--------------------DEF------------KERLDEYL 134 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccch--hHhhcccCC-H--------------------HHH------------HHHHHHHH
Confidence 124556666666665433211111 111000000 0 000 12233444
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh----C----------CCCChh--HHHHHHHHhHhcCCHH
Q 045600 644 TELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK----G----------LDKHVA--VSNALMDSYVRCGNIS 707 (899)
Q Consensus 644 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~ 707 (899)
..+..+|+++ +|..|-..|....+......++...... + -.|+.. ++..+...|...|+++
T Consensus 135 ~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~ 211 (517)
T PF12569_consen 135 RPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE 211 (517)
T ss_pred HHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5555555433 2333333344444444444444443322 1 112222 3355566777777777
Q ss_pred HHHHHHHhcC--CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 708 MARKLFGSLI--YKD-AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 708 ~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
+|.+.+++.+ .|+ +..|..-...+.+.|++++|.+.++..++ +.+ |...-+-.+..+.++|+.++|.+++....
T Consensus 212 ~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 212 KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 7777777766 343 44666677777777777777777777776 445 44455555556777777777777777776
Q ss_pred HcCCccCcchH--------HHHHHHHhhcCChHHHHHHHHh
Q 045600 784 EHGISQKMEHY--------ACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 784 ~~~~~p~~~~~--------~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
..+..|....+ ...+.+|.+.|++..|+..+..
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 54443332222 2345677777777777666543
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.3e-06 Score=90.81 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=115.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHH-----
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVL-SIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNAL----- 696 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----- 696 (899)
.-.+..+..+..+++.|++-+....+.. ...+|. ..-.++...|.+......-....+.|-. ...-|+.+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 3445666666677777777777777653 334443 3334466666666655555554444432 11112222
Q ss_pred --HHHhHhcCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCC
Q 045600 697 --MDSYVRCGNISMARKLFGSLIYK--DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGL 771 (899)
Q Consensus 697 --i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~ 771 (899)
..+|.+.++++.|...|.+...+ ++.+ ..+....+++++..+...- +.|... -...-...+.+.|+
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 22444455556666666554311 1111 1122233444444433333 333321 11112334555666
Q ss_pred HHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHH
Q 045600 772 VEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEIISGML 849 (899)
Q Consensus 772 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 849 (899)
+..|...|.+++... +-|...|....-+|.+.|.+..|++-.+.. ...|+.. .|.--+.++....+++.|.+.|+..
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655433 223355666666666666666665555544 3333322 2333334444445566666666666
Q ss_pred HhcCCCCchhHHHHHHHHHhc
Q 045600 850 FEMDPENPGSYVMLHNIYASA 870 (899)
Q Consensus 850 ~~~~p~~~~~~~~l~~~y~~~ 870 (899)
++.+|++..+...+..++..+
T Consensus 453 le~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHh
Confidence 666666666555555555543
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=7.8e-08 Score=92.75 Aligned_cols=239 Identities=13% Similarity=0.089 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHHhcCChhhhhhHHHHhhcCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 045600 586 VTFLNALITMYCNCGSTNDGRLCLLLFQMGD--KREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIIS 663 (899)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 663 (899)
-.--+.+..+|.+.|...+|+ +.++... .+-+.+|--|-..|.+..++..|+.++.+-.+. .|-.+||.
T Consensus 223 wwWk~Q~gkCylrLgm~r~Ae---kqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l---- 293 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAE---KQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL---- 293 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhH---HHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh----
Confidence 333466788888899999888 5555433 356677888889999999999999999988774 57766662
Q ss_pred HhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHH
Q 045600 664 AGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIY---KDAFSWSVMINGYGLYGDGEAA 740 (899)
Q Consensus 664 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 740 (899)
.-+...+...++.++|.++++...+ .++....++...|.-.++++-|
T Consensus 294 ------------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 294 ------------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred ------------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHH
Confidence 2233444555667777777777652 2445555566677778888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc--chHHHHHHHHhhcCChHHHHHHHHhC-
Q 045600 741 LELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM--EHYACMVDLLGRTGHLNEAFIFVKKL- 817 (899)
Q Consensus 741 ~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~- 817 (899)
+..++++.+.|+. +...|+.+.-+|.-.+++|-++.-|++....--.|+. .+|..+....+..|++.-|.+-|+-.
T Consensus 344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 8888888888754 4566777777777888888888888888754444543 77888888888999999998888766
Q ss_pred CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 045600 818 PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLH 864 (899)
Q Consensus 818 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 864 (899)
...| ....++.|.-.-.+.|+++.|..+++.+....|+-....++++
T Consensus 423 ~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 423 TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 3344 4557888888888899999999999999999998666555543
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=0.00021 Score=79.97 Aligned_cols=365 Identities=12% Similarity=-0.039 Sum_probs=212.0
Q ss_pred hhhHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh
Q 045600 516 SVSWNTLISRCVQ----N----GAVEEAVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADV 586 (899)
Q Consensus 516 ~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 586 (899)
..+|..++..|.+ . .+...|+..+++..+ ...+ ..+|+.+ ......|++.-+..-|-.-.... +...
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHH-HHhhccchhhhhhhhhhhhhhcc-ccch
Confidence 4566666555544 1 223467777877766 3344 4455444 44466677766655554333322 2234
Q ss_pred hHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHhHHHHHH
Q 045600 587 TFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLG----AGLEPDNVTVLSII 662 (899)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~~ll 662 (899)
.+|..+.-.+.+..+++-|...+...+...+.+...|--........|+.-+++.+|..--. .|-.|+..-+....
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 55666666777888999998555555555666788887777777788888888888877222 23345544444444
Q ss_pred HHhcccCCHHHHHHHHHHHH------Hh---CCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-----CCCHHHHHH--
Q 045600 663 SAGVLINSLNLTHSLMAFVI------RK---GLDKHVAVSNALMDSYVRCGNISMARKLFGSLI-----YKDAFSWSV-- 726 (899)
Q Consensus 663 ~a~~~~~~~~~a~~~~~~~~------~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~-- 726 (899)
.-....|+.+.-......+. +. +.+.....|.+.....-+.+...+|.+...+.+ +-+...|+.
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 44455666554433333221 11 344466777777777778888888888777764 335555663
Q ss_pred --HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCccCc-chHHHHHHHHh
Q 045600 727 --MINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVE-HGISQKM-EHYACMVDLLG 802 (899)
Q Consensus 727 --li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~-~~~~~l~~~~~ 802 (899)
+...++..|.++.|...+...-. ..+......-+. ..-.|+++++.+.|+++.. ..-..+. .....++....
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 33445566777765544332211 112222222222 2346899999999999882 2222332 44555666777
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChHHHH
Q 045600 803 RTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMD---PENPGSYVMLHNIYASAGRWEDAY 877 (899)
Q Consensus 803 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~eA~ 877 (899)
..+.-+.|...+-+. ..+|+......+...+.-..|......+.+.+.++- --+-..-...-.+|..+||-+--.
T Consensus 1087 ~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk 1166 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVK 1166 (1238)
T ss_pred hcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHH
Confidence 888888888877665 456677666666655544444333333444333322 112222344555788899988888
Q ss_pred HHHHHHHhCCC
Q 045600 878 RVRSCMKRSRL 888 (899)
Q Consensus 878 ~~~~~~~~~~~ 888 (899)
+++++..-..+
T Consensus 1167 ~~~qr~~h~~P 1177 (1238)
T KOG1127|consen 1167 KQIQRAVHSNP 1177 (1238)
T ss_pred HHHHHHHhcCC
Confidence 88888775443
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5e-06 Score=79.52 Aligned_cols=380 Identities=12% Similarity=0.026 Sum_probs=222.4
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcC
Q 045600 489 NALLMFYSDGGQFSYAFTLFHRMSTR---SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLIS-FLPNLNKN 564 (899)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~ 564 (899)
++.+..+.+..++++|.+++..-.++ +....+.+..+|....++..|-+.++++-. ..|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 33444445566666666666554432 445566666777777777777777777765 4555444432 23445566
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChhhhhhHHHHhhcCC-CCChhhHHHHHHHHHHcCCHHHHHH
Q 045600 565 GNIKQGMVIHGYAIKTGCVADVTF--LNALITMYCNCGSTNDGRLCLLLFQMGD-KREISLWNAIISVYVQTNKAKQAVA 641 (899)
Q Consensus 565 g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 641 (899)
+.+.+|+.+...|... +.... ...-.......+++..++ .+.++.+ +.+..+.+.......+.|+++.|++
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~r---sLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSR---SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchH---HHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 6677777766665432 11111 111111223456666666 5666655 3455555555556677888888888
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC-------------Ch---------------hHH
Q 045600 642 FFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK-------------HV---------------AVS 693 (899)
Q Consensus 642 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-------------~~---------------~~~ 693 (899)
-|+...+-+---....|+..+ +..+.++++.|++...+++++|++. |+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 888877653233345565444 3446678888888888888876541 11 122
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHH
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIY-----KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACS 767 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~ 767 (899)
|.-...+.+.|+++.|.+.+-.|++ -|++|...+.-.-. .+++.+..+-++-+.+ +.| ...||..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 2233345678999999999999983 37788776643322 3455556665666665 456 5579999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCc-cCcchHHHHHHHHhhc-CChHHHHHHHHhCCCCCCHHHHHHH-H--HHHHhhCC---H
Q 045600 768 HAGLVEQSKMVFKSMVEHGIS-QKMEHYACMVDLLGRT-GHLNEAFIFVKKLPCKPSVSILESL-L--GACRIHGN---V 839 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l-~--~~~~~~g~---~ 839 (899)
+..-++-|-.++-+-...-.. .+...| .+++++... -..++|++-+..+...--.. ++.+ + ..-+..++ .
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l~~k-LRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGMLTEK-LRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHH
Confidence 999999988887652111000 111222 244555433 45667766665541110000 1111 1 11112222 2
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 840 ELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 840 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+++-++..+++.-+ +.-..++.|....++..+.+.|..-.+
T Consensus 400 R~ai~~Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 3455556666666533 566778999999999999999987654
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=3e-05 Score=75.85 Aligned_cols=329 Identities=11% Similarity=0.060 Sum_probs=182.5
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhcCCC
Q 045600 491 LLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLI---SRCVQNGAVEEAVILLQRMQKEGVELDMVTLI-SFLPNLNKNGN 566 (899)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~ 566 (899)
+-..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+..+ ++||-..-. --...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 334455567888888888877776766666654 457777887778777777776 677743321 12234567778
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 045600 567 IKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTEL 646 (899)
Q Consensus 567 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 646 (899)
++.|..=|+..++...... ....++.+....++-. .....+..+...|+...|++....+
T Consensus 122 le~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~---------------~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHW---------------VLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHH---------------HHHHHHHHHhcCCchhhHHHHHHHH
Confidence 8888777777776543211 1111111111111111 1112333444556666666666666
Q ss_pred HHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCCHHHH
Q 045600 647 LGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YKDAFSW 724 (899)
Q Consensus 647 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 724 (899)
.+-. +.|...|..-..+|...|.+..|..=++...+..-. ++...--+...+...|+.+.++..+++.. .||-...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 6642 334444444444455555555554444433333222 23333334445555555555555555544 2221110
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc---chHHHHHHHH
Q 045600 725 SVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM---EHYACMVDLL 801 (899)
Q Consensus 725 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~ 801 (899)
|..-+.+.+..+.++.|.+ ....++|.++.+-.+...+....... ..+..+..++
T Consensus 260 ------f~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 ------FPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred ------HHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 0000111222222222222 34566777777777777744433112 3444566777
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045600 802 GRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHN 865 (899)
Q Consensus 802 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 865 (899)
...|++-+|++...+. ...|+ ..++..-..+|....+++.|+.-|+++.+.+|+|..+-..+-.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 8888888888888776 66666 5567777788888888888999999999888888776555433
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=5.9e-07 Score=90.40 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=113.7
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCC-H---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh----H
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI--YKD-A---FSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI----T 758 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 758 (899)
....+-.+...+.+.|++++|...++++. .|+ . ..+..+..++...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 44455566666777777777777777665 232 2 3556666777777777777777777776 344322 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 045600 759 YLGVLSACSHA--------GLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESL 829 (899)
Q Consensus 759 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 829 (899)
+..+..++... |++++|.+.++.+.+. .|+. ..+..+... +....... .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHHH-----------HHHHHH
Confidence 33444444433 5667777777776633 2332 122111111 00000000 011245
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPEN---PGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
...+...|+.+.|+..++.+++..|++ +.++..++.+|.+.|++++|.++++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667889999999999999999998765 478999999999999999999999998754
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=2.6e-05 Score=84.19 Aligned_cols=257 Identities=9% Similarity=0.023 Sum_probs=162.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHH---HHHHhcccCCHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHhH
Q 045600 627 ISVYVQTNKAKQAVAFFTELLGAGLEPDN-VTVLS---IISAGVLINSLNLTHSLMAFVIRKGLDKH-VAVSNALMDSYV 701 (899)
Q Consensus 627 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 701 (899)
...+...|++++|.+++++..+.. |+. ..+.. ........+..+.+...+.. .....|+ ......+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 334567788999999998888753 433 33331 12222234555555555544 1223333 334445667888
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHHHccCCHHHH
Q 045600 702 RCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGV-RPNE--ITYLGVLSACSHAGLVEQS 775 (899)
Q Consensus 702 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~l~~~~~~~g~~~~A 775 (899)
..|++++|.+.+++.. +.+...+..+...+...|++++|+..+++.....- .|+. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999887 33567788888999999999999999999887421 1232 2455677889999999999
Q ss_pred HHHHHHHHHcCCccC-cchH-H--HHHHHHhhcCChHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhhCCHHHHHH
Q 045600 776 KMVFKSMVEHGISQK-MEHY-A--CMVDLLGRTGHLNEAFIF---VKKL-PCKPS---VSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~-~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
..++++.......+. .... . .+...+...|..+.+..+ .... ...|. .........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999863222111 1111 1 233334444433333222 1111 11111 1222356677788899999999
Q ss_pred HHHHHHhcCCC---------CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 845 ISGMLFEMDPE---------NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 845 ~~~~~~~~~p~---------~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.++.+...... ........+.++..+|++++|.+.+......+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 98887654322 35566788889999999999999998876543
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=3.7e-07 Score=95.63 Aligned_cols=211 Identities=11% Similarity=0.059 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 045600 671 LNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQM 747 (899)
Q Consensus 671 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 747 (899)
+.+|.-.|+..++..+. +...|..|.......++-..|+..+.+.. ..|....-.|.-.|...|.-..|++.++.-
T Consensus 301 L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred chHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33333334333333322 45555555555666666666666666665 234556666667777777777777777776
Q ss_pred HHcCCCCChhHHHHHH-----------HHHHccCCHHHHHHHHHHHH-HcCCccCcchHHHHHHHHhhcCChHHHHHHHH
Q 045600 748 QLSGVRPNEITYLGVL-----------SACSHAGLVEQSKMVFKSMV-EHGISQKMEHYACMVDLLGRTGHLNEAFIFVK 815 (899)
Q Consensus 748 ~~~g~~p~~~t~~~l~-----------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 815 (899)
.... |. |..+. ..+.....+....++|-++. +.+..+|+.++..|.-.|.-.|++++|...|+
T Consensus 380 i~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 380 IRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 5421 11 00000 11222233445556665555 66667888999999999999999999999999
Q ss_pred hC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 816 KL-PCKPSV-SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 816 ~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+ ..+|+. ..|+-|+..+....+.++|+..|++++++.|.-..+.++|+..|...|-|+||.++|=.+....
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88 666655 5799999999888899999999999999999999999999999999999999999987765443
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=1.3e-06 Score=88.93 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=114.9
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----ccCCH
Q 045600 697 MDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACS----HAGLV 772 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~----~~g~~ 772 (899)
...+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++. ..+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 35566788888888888776 4555666678888899999999999999986 44443 4444444433 23468
Q ss_pred HHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCH-HHHHHHHHHH
Q 045600 773 EQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNV-ELGEIISGML 849 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 849 (899)
.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++. ...| ++.++..++-.....|+. +.+.+...++
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999875 34567788889999999999999999998876 4344 455677777777777776 7788899999
Q ss_pred HhcCCCCchhHH
Q 045600 850 FEMDPENPGSYV 861 (899)
Q Consensus 850 ~~~~p~~~~~~~ 861 (899)
...+|++|..-.
T Consensus 263 ~~~~p~h~~~~~ 274 (290)
T PF04733_consen 263 KQSNPNHPLVKD 274 (290)
T ss_dssp HHHTTTSHHHHH
T ss_pred HHhCCCChHHHH
Confidence 999998765544
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=2.4e-05 Score=76.54 Aligned_cols=189 Identities=15% Similarity=0.102 Sum_probs=144.7
Q ss_pred HHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCH
Q 045600 697 MDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLV 772 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~ 772 (899)
+..+.-.|+...|++.+..++ .-|...|..-..+|...|++..|+.-++...+ +.. |..++.-+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhH
Confidence 344556788899999888887 33777788888899999999999987777765 444 345666666778889999
Q ss_pred HHHHHHHHHHHHcCCccCc----chHHHH---H------HHHhhcCChHHHHHHHHhC-CCCCCHH-----HHHHHHHHH
Q 045600 773 EQSKMVFKSMVEHGISQKM----EHYACM---V------DLLGRTGHLNEAFIFVKKL-PCKPSVS-----ILESLLGAC 833 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~~----~~~~~l---~------~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~ 833 (899)
+.++...++.+ .+.||- ..|..+ . ....+.++|.++++-.++. +..|... ....+..++
T Consensus 240 ~~sL~~iRECL--KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 240 ENSLKEIRECL--KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHHH--ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 99998888888 445553 223221 1 2345678888888887765 6666622 234455667
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 834 RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
...+++-+|++....+++.+|+|..++...+.+|.-...|++|++-|++..+-+..
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 78899999999999999999999999999999999999999999999999876544
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=1.1e-06 Score=84.27 Aligned_cols=149 Identities=9% Similarity=0.100 Sum_probs=109.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCCh
Q 045600 728 INGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHL 807 (899)
Q Consensus 728 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 807 (899)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3567777887776444332221 11 01223566677777777776433 34558888899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhhCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 808 NEAFIFVKKL-PCKP-SVSILESLLGAC-RIHGN--VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 808 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998887 5555 455666777654 56666 58999999999999999999999999999999999999999999
Q ss_pred HHhCCCc
Q 045600 883 MKRSRLK 889 (899)
Q Consensus 883 ~~~~~~~ 889 (899)
+.+....
T Consensus 170 aL~l~~~ 176 (198)
T PRK10370 170 VLDLNSP 176 (198)
T ss_pred HHhhCCC
Confidence 9875553
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=5.5e-07 Score=81.71 Aligned_cols=94 Identities=14% Similarity=-0.004 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
+..+...+...|++++|...++.. ...| +...+..++..+...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334555556666666666666655 3333 34455666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHhCC
Q 045600 872 RWEDAYRVRSCMKRSR 887 (899)
Q Consensus 872 ~~~eA~~~~~~~~~~~ 887 (899)
++++|++.+++..+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666665433
No 104
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=1.7e-05 Score=81.92 Aligned_cols=211 Identities=13% Similarity=0.021 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC-CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCH--HHHHHH
Q 045600 670 SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCG-NISMARKLFGSLI---YKDAFSWSVMINGYGLYGDG--EAALEL 743 (899)
Q Consensus 670 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~ 743 (899)
..++|+...+.+++.... +..+|+.....+.+.| +++++++.++++. .++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 334444555544444322 2333444444455556 5788888888876 34556777666556666653 677888
Q ss_pred HHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhc---CCh----HHHHHHHH
Q 045600 744 FKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRT---GHL----NEAFIFVK 815 (899)
Q Consensus 744 ~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 815 (899)
++++.+ ..| |..+|.....++...|+++++++.++++++... .+...|+....++.+. |.. ++++++.+
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 888887 667 567888888888888999999999999986552 2346676666666554 222 45677775
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhh----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC------------------
Q 045600 816 KL-PCKPS-VSILESLLGACRIH----GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG------------------ 871 (899)
Q Consensus 816 ~~-~~~p~-~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------------------ 871 (899)
++ ...|+ ...|..+.+.+... +....+..++..+...+|+++.++..|+++|....
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 54 55554 45687777777663 34566888899999999999999999999998642
Q ss_pred ChHHHHHHHHHHH
Q 045600 872 RWEDAYRVRSCMK 884 (899)
Q Consensus 872 ~~~eA~~~~~~~~ 884 (899)
..++|.++++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 3478999999884
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=4e-08 Score=62.87 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=26.1
Q ss_pred CCCCchhhhhHHHHHHHhcCChHHHHHHhccCC
Q 045600 177 GYHQNLVIQTALVDFYAKKGEMLTARLLFDQIP 209 (899)
Q Consensus 177 g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~ 209 (899)
|+.||+++||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1e-06 Score=84.06 Aligned_cols=199 Identities=15% Similarity=0.073 Sum_probs=160.6
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHc
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLIY---KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGV-LSACSH 768 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-~~~~~~ 768 (899)
+.+.+..+.+..++++|++++..-.+ ++....+.+..+|....++..|-..++++.. ..|...-|... .+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 35556666788889999998877652 3566778888889999999999999999987 67877766654 347889
Q ss_pred cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGM 848 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 848 (899)
++.+.+|+.+...|.+. ..........=..+....+++..+..+++..+.+.+..+.....-...+.|+++.|.+-++.
T Consensus 91 A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred hcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 99999999999988642 11112333333344567888999999999987667777777777777899999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCc
Q 045600 849 LFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGF 894 (899)
Q Consensus 849 ~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~ 894 (899)
+++..--+|..-++++-+.++.|+++.|+++..++.++|++..|.+
T Consensus 170 AlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 9999988899999999999999999999999999999999999976
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00012 Score=76.72 Aligned_cols=217 Identities=13% Similarity=0.035 Sum_probs=137.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEP------DNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAV 692 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 692 (899)
++.-++....+|...|.+.+....-....+.|-.. =...+..+-.++.+.++++.+..++.+.......|+.
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-- 333 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-- 333 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH--
Confidence 33334444455555555555444444444433110 0111222333566678888999999886665444432
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcC--CCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHc
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLI--YKDAF-SWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSH 768 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~ 768 (899)
..+....+++.+..+... .|... --..-...+.+.|++..|++.|.+++.. .| |...|....-+|.+
T Consensus 334 -------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 334 -------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLK 404 (539)
T ss_pred -------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHH
Confidence 344455666666665544 34321 1222366788999999999999999985 47 56789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhh-CCHHHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIH-GNVELGEII 845 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~a~~~ 845 (899)
.|.+..|+.=.+..++. .|+. ..|..-+.++....+|++|.+.|++. ...|+..-+..-+.-|... ......+++
T Consensus 405 L~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred HhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHH
Confidence 99999999998888854 4443 67777778888888999999999887 6667665554444444432 222333445
Q ss_pred HHH
Q 045600 846 SGM 848 (899)
Q Consensus 846 ~~~ 848 (899)
.++
T Consensus 483 ~~r 485 (539)
T KOG0548|consen 483 KRR 485 (539)
T ss_pred HHh
Confidence 554
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=8.8e-05 Score=91.16 Aligned_cols=372 Identities=10% Similarity=-0.036 Sum_probs=183.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhcCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 045600 487 VLNALLMFYSDGGQFSYAFTLFHRMSTRSSVS--WNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKN 564 (899)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 564 (899)
........+...|++.+|.............. ...........|+.+.+...+..+.......+..........+...
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 44455566777888888777766665432211 1122234455677766666665542211111111222233344556
Q ss_pred CChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 045600 565 GNIKQGMVIHGYAIKTGCVAD---VTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVA 641 (899)
Q Consensus 565 g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 641 (899)
|+++++..++......--..+ ..... ......+...+...|++++|..
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~-----------------------------~~~~~~~a~~~~~~g~~~~A~~ 473 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQ-----------------------------AEFNALRAQVAINDGDPEEAER 473 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHH-----------------------------HHHHHHHHHHHHhCCCHHHHHH
Confidence 677777776665543210000 00000 0000111122334555556655
Q ss_pred HHHHHHHCCCCCCH----hHHHHHHHHhcccCCHHHHHHHHHHHHHh----CCC-CChhHHHHHHHHhHhcCCHHHHHHH
Q 045600 642 FFTELLGAGLEPDN----VTVLSIISAGVLINSLNLTHSLMAFVIRK----GLD-KHVAVSNALMDSYVRCGNISMARKL 712 (899)
Q Consensus 642 l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~ 712 (899)
.+++....-...+. .....+...+...|+++.|...+...... |.. +....+..+...+...|++++|...
T Consensus 474 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 474 LAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55555442111111 12222333344556666666665555433 110 0112334445556666777777666
Q ss_pred HHhcCC-------C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC--hhHHHHHHHHHHccCCHHHHHH
Q 045600 713 FGSLIY-------K----DAFSWSVMINGYGLYGDGEAALELFKQMQLSG--VRPN--EITYLGVLSACSHAGLVEQSKM 777 (899)
Q Consensus 713 ~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~l~~~~~~~g~~~~A~~ 777 (899)
+++... + ....+..+...+...|++++|...+++..... ..|. ...+..+...+...|++++|..
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 655431 0 11223344455566677777777776665421 1121 2234444556667777777777
Q ss_pred HHHHHHHcCCccC-cchH-----HHHHHHHhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhhCCHHHHHHH
Q 045600 778 VFKSMVEHGISQK-MEHY-----ACMVDLLGRTGHLNEAFIFVKKLPCK--PSV----SILESLLGACRIHGNVELGEII 845 (899)
Q Consensus 778 ~~~~m~~~~~~p~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~ 845 (899)
.++++........ ...+ ......+...|+.+.|.+++...... ... ..+..+...+...|+.++|...
T Consensus 634 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 634 YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777653210000 0001 01123344567777777777655211 111 1133455666777788888777
Q ss_pred HHHHHhcCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 846 SGMLFEMDP------ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 846 ~~~~~~~~p------~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
++++.+... ....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 714 LEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777776531 123456677778888888888888877776533
No 109
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=5.4e-06 Score=85.56 Aligned_cols=192 Identities=10% Similarity=0.048 Sum_probs=144.8
Q ss_pred HHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccC
Q 045600 696 LMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYG-DGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAG 770 (899)
Q Consensus 696 li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g 770 (899)
+-..+...++.++|+.+.++++ .| +..+|+.....+...| ++++++..++++.+ ..| +..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcC
Confidence 3344556778899999999887 33 4457776667777777 68999999999998 466 4456776666666666
Q ss_pred CH--HHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhh---CC----H
Q 045600 771 LV--EQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIH---GN----V 839 (899)
Q Consensus 771 ~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~----~ 839 (899)
+. ++++.+++++++.. +-+...|.....++.+.|++++|++.++++ ... .+...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 53 77899998988543 234488999999999999999999999998 333 4556677766555443 22 3
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCcc
Q 045600 840 ELGEIISGMLFEMDPENPGSYVMLHNIYAS----AGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 840 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~~~~ 890 (899)
+.++...+++++.+|+|..+|..++.+|.. .++..+|.+.+.++.+.+++.
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 567888899999999999999999999998 456788999988877655543
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=2.1e-06 Score=77.88 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 045600 742 ELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK 820 (899)
Q Consensus 742 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 820 (899)
.++++..+ +.|+. +..+..++...|++++|...|+.+.... +.+...|..++.++.+.|++++|...+++. ...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45566655 55654 4456667788888888888888888433 224478888999999999999999999888 444
Q ss_pred C-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 821 P-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 821 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
| ++..+..++.++...|+.++|+..++++++..|+++..+..++++...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4 566788888889999999999999999999999999999888877654
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.50 E-value=0.00019 Score=77.45 Aligned_cols=265 Identities=11% Similarity=0.031 Sum_probs=167.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHhHHHH-HHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHH---
Q 045600 620 ISLWNAIISVYVQTNKAKQAVAFFTELLGAGL-EPDNVTVLS-IISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSN--- 694 (899)
Q Consensus 620 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 694 (899)
...|..+...+...|+.+.+...+.+..+... .++...... ....+...|+++.|...++...+..+. +...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhH
Confidence 34455555666666777776666666554321 222222211 122356789999999999998887543 333333
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccC
Q 045600 695 ALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAG 770 (899)
Q Consensus 695 ~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g 770 (899)
.........+..+.+.+.+.... .| ....+..+...+...|++++|++.+++..+ ..|+ ...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcC
Confidence 12222233566677777776533 22 234555666788999999999999999998 5675 457788888999999
Q ss_pred CHHHHHHHHHHHHHcCC-ccCc--chHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHH-H-H--HHHHHHHhhCCHH
Q 045600 771 LVEQSKMVFKSMVEHGI-SQKM--EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP--SVSI-L-E--SLLGACRIHGNVE 840 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~-~-~--~l~~~~~~~g~~~ 840 (899)
++++|...+++..+... .|+. ..|..+...+...|++++|...+++. ...| .... . . .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999999885332 2222 34567899999999999999999986 2223 2111 1 1 3344445556444
Q ss_pred HHHHH---HHHHHhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 841 LGEII---SGMLFEMDPE--NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 841 ~a~~~---~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+... ........|. ....-.+.+.++...|+.++|.+.++.+....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33333 2222111122 12222467788889999999999999987543
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=1.5e-05 Score=90.90 Aligned_cols=130 Identities=15% Similarity=0.038 Sum_probs=94.7
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHH
Q 045600 754 PNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLL 830 (899)
Q Consensus 754 p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~ 830 (899)
.+...+..|.....+.|++++|..+++.+. .+.|+. .....++.++.+.+++++|+..+++. ...|+.. ....+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIH--QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 346677777777777777888877777777 345655 56666777777888888888777776 5556544 355566
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 831 GACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 831 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+...|++++|+.+|++++..+|+++.++..+++++...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667778888888888888887777788888888888888888888877777653
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=3.3e-05 Score=73.62 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhh
Q 045600 725 SVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGR 803 (899)
Q Consensus 725 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 803 (899)
..+-..+...|+-+.+..+..+... ..| |......++....+.|++..|...+++..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 3344455555555555555544332 222 22333345555556666666666666655321 3444666666666666
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 045600 804 TGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 804 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~ 880 (899)
.|+.++|..-+.+. ...| ++...+++...+.-+||.+.|+.++..+....+.+..+-.+|+-+...+|++++|..+-
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666555544 3232 34445666666666666666666666666666666666666666666666666665543
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=5e-06 Score=75.21 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=75.5
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
.....++..+...|++++|.+.++++ ...| ++..+..+...+...|+++.|...++++.+.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556677777788888888877776 3333 455677777778888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 045600 870 AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~~ 888 (899)
.|++++|++.+++..+..+
T Consensus 98 ~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 98 LGEPESALKALDLAIEICG 116 (135)
T ss_pred cCCHHHHHHHHHHHHHhcc
Confidence 8888888888888876554
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=4.8e-05 Score=80.21 Aligned_cols=217 Identities=13% Similarity=0.135 Sum_probs=130.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 045600 526 CVQNGAVEEAVILLQRMQKEGVEL-DMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTND 604 (899)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 604 (899)
+.+.|++.+|.-.|+...+. .| +...|..|.......++-..|+..+.++.
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl-------------------------- 346 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCL-------------------------- 346 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--------------------------
Confidence 45666666666666666553 23 23344444444444444444444433333
Q ss_pred hhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------CCHhHHHHHHHHhcccCCHHHHHH
Q 045600 605 GRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLE--------PDNVTVLSIISAGVLINSLNLTHS 676 (899)
Q Consensus 605 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~ 676 (899)
+..+.+....-+|.-.|...|.-.+|+..++.-+....+ ++..+-.. .............+
T Consensus 347 ---------~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 347 ---------ELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQE 415 (579)
T ss_pred ---------hcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHH
Confidence 333445555556666666666667777777766543210 00000000 11122222334445
Q ss_pred HHHHHHHh-CCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 045600 677 LMAFVIRK-GLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGV 752 (899)
Q Consensus 677 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 752 (899)
+|-++... +..+|+.++..|.-.|--.|++++|.+.|+..+ +| |...||.|...++...+.++|+..|++.++ +
T Consensus 416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--L 493 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--L 493 (579)
T ss_pred HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--c
Confidence 55555444 656778888888888888888888888888876 34 667888888888888888888888888887 7
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 753 RPNEI-TYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 753 ~p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
+|+-+ ...-|.-.|...|.+++|.+.|=..+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 88654 44445556777888888877776554
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.0002 Score=68.17 Aligned_cols=156 Identities=16% Similarity=0.045 Sum_probs=93.2
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----ccCCH
Q 045600 697 MDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACS----HAGLV 772 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~----~~g~~ 772 (899)
...|++.|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|++ --+..|.+.|..++. ..+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 34567777888888777774333333322 2334455677778888888875 234456666666543 23456
Q ss_pred HHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHH
Q 045600 773 EQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNV-ELGEIISGML 849 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 849 (899)
.+|.-+|++|-+ ...|++.+.+....+....|++++|..++++. +...++.++..++-.....|.. +.-.+...++
T Consensus 190 qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 190 QDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 667777777763 24566666666666667777777777777666 3444555665555555555543 4445566666
Q ss_pred HhcCCCCch
Q 045600 850 FEMDPENPG 858 (899)
Q Consensus 850 ~~~~p~~~~ 858 (899)
....|.++.
T Consensus 269 k~~~p~h~~ 277 (299)
T KOG3081|consen 269 KLSHPEHPF 277 (299)
T ss_pred HhcCCcchH
Confidence 666666543
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=4.6e-07 Score=57.99 Aligned_cols=32 Identities=28% Similarity=0.565 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 045600 751 GVRPNEITYLGVLSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 751 g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m 782 (899)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=2.5e-05 Score=74.44 Aligned_cols=136 Identities=18% Similarity=0.100 Sum_probs=114.4
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 045600 752 VRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESL 829 (899)
Q Consensus 752 ~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 829 (899)
..|+.....-+-..+...|+-+....+...... ..+.+.......+....+.|++.+|...+++. ..++|...|+.+
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 566443335566678888888888888777542 22334456666899999999999999999998 677889999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
..+|.+.|+.+.|...+.+++++.|+++.++++|+..|.-.|++++|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999876443
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.34 E-value=1.3e-05 Score=71.03 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=85.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
.....+...+...|++++|..+|+-+ ...|. ...|..|...+...|++++|+..|.++..++|++|.++.+++.+|.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45556778888999999999999987 55554 55789999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 045600 870 AGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~ 887 (899)
.|+.++|.+-|+......
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999876543
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00013 Score=75.76 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHH
Q 045600 768 HAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
..|.+++|+..++.++.. .|+. ..+...++.+.+.++.++|.+.++++ ...|+ ...+..+...+.+-|+.++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 344445555555544421 2222 33334444555555555555555544 33343 2234444455555555555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 045600 845 ISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYR 878 (899)
Q Consensus 845 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~ 878 (899)
.++.....+|+||..|..|+.+|..+|+..+|..
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555555555555555555555544444444433
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=2.2e-05 Score=84.88 Aligned_cols=211 Identities=9% Similarity=-0.030 Sum_probs=139.1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCC
Q 045600 659 LSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YKDAFSWSVMINGYGLYGD 736 (899)
Q Consensus 659 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~ 736 (899)
..+...+...|-...|..+++++ .++...+.+|+..|+..+|..+..+-. +||+..|..+.+.....--
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 33444555566666666666653 345666777777777777777766555 4566666666666666556
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHH
Q 045600 737 GEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVK 815 (899)
Q Consensus 737 ~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 815 (899)
+++|.++.+..-.. .-..+..-..+.++++++...|+.-.+. .|- ..+|..+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 66666666654331 1222222233467777777777765532 222 3667777777777778888777777
Q ss_pred hC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 816 KL-PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 816 ~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.. ...|+.. .|+++-.+|.+.|+-.+|...++.+++-+-++..++.+...+..+-|.+++|++.++++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 66 5556543 578888888888888888888888877777777777777777788888888888877776543
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=4.9e-05 Score=87.65 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=134.6
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLIYK--------DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYL 760 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 760 (899)
+...|-..|......++.++|.++.++.... -...|.++++.....|.-+...++|+++.+ .--....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHH
Confidence 3445555666666777777777777776511 234677777776677777777777777775 222234567
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhh
Q 045600 761 GVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS---VSILESLLGACRIH 836 (899)
Q Consensus 761 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~ 836 (899)
.|...|.+.+.+++|-++++.|.++ +......|..+++.+.+..+-+.|..+++++ .+-|. .....-++..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777777777777888888777732 2245567777777777777777777777765 44444 33455555666777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
||.+.+..+++-.+...|.....|..+++.-.++|..+.+..+|+++...++
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7777777777777777777777777777777777777777777777776554
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=8.4e-05 Score=70.09 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=110.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHh
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLS-ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLG 802 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 802 (899)
|..++-+....|+.+.|...++++... .|.+.-...|-. -+...|.+++|.++|+.+++.. +-|..+|..-+.+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 444555556667777777777777664 255433322222 3456677888888888777544 334467777777777
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---ChHHHH
Q 045600 803 RTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG---RWEDAY 877 (899)
Q Consensus 803 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---~~~eA~ 877 (899)
..|+.-+|++-+.+. .+..|...|..+...|...|+++.|.-.++.++-..|-++..+-.++.+++-+| +..-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777766655 566777788888888888888888888888888888888888888888877776 555566
Q ss_pred HHHHHHHhCCC
Q 045600 878 RVRSCMKRSRL 888 (899)
Q Consensus 878 ~~~~~~~~~~~ 888 (899)
++|.+..+..+
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 77776665443
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.31 E-value=0.0024 Score=78.69 Aligned_cols=369 Identities=9% Similarity=-0.063 Sum_probs=191.7
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHcCCChHHHHHHHhhcCC----CChhhHHHHHHHHHhc
Q 045600 455 SVLSGCSKLDDVLLGKSAHAFSLRKGIVSN-LDVLNALLMFYSDGGQFSYAFTLFHRMST----RSSVSWNTLISRCVQN 529 (899)
Q Consensus 455 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 529 (899)
.....+...|++.++....... +..+. ..............|+++.+...++.++. .+..........+...
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 3344455667766655433322 21111 11112223345567888888888887742 2233334455566788
Q ss_pred CCHHHHHHHHHHHHHcC--CC----CCHH--HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 045600 530 GAVEEAVILLQRMQKEG--VE----LDMV--TLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGS 601 (899)
Q Consensus 530 g~~~~A~~~~~~m~~~g--~~----p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 601 (899)
|+++++...+......- .. +... ....+...+...|++++|...++...+.-...+...
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------- 489 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS------------- 489 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH-------------
Confidence 99999999998876531 11 1111 111122334566777777777776654211111000
Q ss_pred hhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--CHhHHHHHHHHhcccCCHHHHHH
Q 045600 602 TNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGL---EP--DNVTVLSIISAGVLINSLNLTHS 676 (899)
Q Consensus 602 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p--~~~t~~~ll~a~~~~~~~~~a~~ 676 (899)
.....+.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|..
T Consensus 490 -----------------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~ 552 (903)
T PRK04841 490 -----------------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYE 552 (903)
T ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 001223334444555666666666555543210 01 11223333444556667777666
Q ss_pred HHHHHHHh----CCC--C-ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC------C--CHHHHHHHHHHHHhCCCHHHHH
Q 045600 677 LMAFVIRK----GLD--K-HVAVSNALMDSYVRCGNISMARKLFGSLIY------K--DAFSWSVMINGYGLYGDGEAAL 741 (899)
Q Consensus 677 ~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~ 741 (899)
.+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+...|++++|.
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66654442 211 1 122334445556667888887777766531 1 1223444556667778888888
Q ss_pred HHHHHHHHcCCC-CChhHH-----HHHHHHHHccCCHHHHHHHHHHHHHcCCccC---cchHHHHHHHHhhcCChHHHHH
Q 045600 742 ELFKQMQLSGVR-PNEITY-----LGVLSACSHAGLVEQSKMVFKSMVEHGISQK---MEHYACMVDLLGRTGHLNEAFI 812 (899)
Q Consensus 742 ~~~~~m~~~g~~-p~~~t~-----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~ 812 (899)
+.+++.....-. .....+ ...+..+...|+.+.|...+........... ...+..+..++...|++++|..
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777776542111 000101 1112334457788888777766542111100 0113456667777888888877
Q ss_pred HHHhC-------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 813 FVKKL-------PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 813 ~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
.+++. +..++ ..+...+..++...|+.+.|...+++++++..+.
T Consensus 713 ~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 713 ILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 77765 11111 1234455567778888888888888888876543
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=4.4e-05 Score=73.37 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=114.2
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHH
Q 045600 697 MDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQS 775 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A 775 (899)
+..|...|+++.+....+.+..|.. .+...++.++++..+++..+ ..| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3567778887776655544332210 11235677888888888777 566 566888888899999999999
Q ss_pred HHHHHHHHHcCCccCcchHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 045600 776 KMVFKSMVEHGISQKMEHYACMVDLL-GRTGH--LNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLF 850 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 850 (899)
...|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..++..+...|++++|+..+++++
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988543 22447788888864 67777 58999999988 5555 45677888888999999999999999999
Q ss_pred hcCCCCchhHH
Q 045600 851 EMDPENPGSYV 861 (899)
Q Consensus 851 ~~~p~~~~~~~ 861 (899)
++.|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99988776554
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=6.2e-05 Score=75.67 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=127.9
Q ss_pred CCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCC-C-ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCC-H---HH
Q 045600 652 EPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLD-K-HVAVSNALMDSYVRCGNISMARKLFGSLI--YKD-A---FS 723 (899)
Q Consensus 652 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~ 723 (899)
......+..+...+...|+++.|...++.+...... | ....+..+...+.+.|++++|...++++. .|+ . ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345566777788889999999999999999887543 2 23466778899999999999999999986 332 2 24
Q ss_pred HHHHHHHHHhC--------CCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchH
Q 045600 724 WSVMINGYGLY--------GDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHY 794 (899)
Q Consensus 724 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 794 (899)
+..+..++... |+.++|++.++++.+ ..|+.. .+..+..... .. ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 56666666654 789999999999988 467543 3322221100 00 000 0112
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 795 ACMVDLLGRTGHLNEAFIFVKKL-PC---KP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 795 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
..+...|.+.|++++|...+++. .. .| ....+..++..+...|+.++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 24667788889999988888876 22 22 2456778888888899999998888877766653
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00017 Score=78.20 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=161.8
Q ss_pred CCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 045600 583 VADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSII 662 (899)
Q Consensus 583 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 662 (899)
+|--..-..+...+.+.|-...|. .++++ ...|...|.+|...|+..+|..+..+-.+ -+||...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl---~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSAL---VIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHH---HHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 344444455666777777777776 55544 24577788888888888888888877777 368888887777
Q ss_pred HHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHH
Q 045600 663 SAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIY---KDAFSWSVMINGYGLYGDGEA 739 (899)
Q Consensus 663 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 739 (899)
+...+.--++.|.++.+..... .-..+.....+.++++++.+.|+.-.. --..+|-.+..+..+.++++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 7777776777777777665433 112222233457899999999987652 245688888888889999999
Q ss_pred HHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 740 ALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 740 A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
|.+.|..... ..||. ..|+.+-.+|.+.|+-.+|...+++..+.+ ..+...|..........|.+++|++.++++
T Consensus 538 av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 538 AVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999988 78965 589999999999999999999999999766 445566777777888999999999998877
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=2.7e-05 Score=81.92 Aligned_cols=121 Identities=13% Similarity=0.094 Sum_probs=98.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhh
Q 045600 759 YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIH 836 (899)
Q Consensus 759 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 836 (899)
...|+..+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++. . .+.+...+......+...
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3445556666778888888888887543 43 4556788888888888999988877 3 334566677777889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
++++.|..+.+++.+..|++..+|..|+.+|.+.|++++|+-.++.+
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888865
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.015 Score=61.46 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhHhcCCHHHHHHHHH
Q 045600 636 AKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK-HVAVSNALMDSYVRCGNISMARKLFG 714 (899)
Q Consensus 636 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 714 (899)
.+...++++++...-..--..+|...+....+..-+..|..+|.+..+.+..+ ++.++++++..|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566666666654322223566777777778888888999999988887666 8888888888776 567788888888
Q ss_pred hcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHH-cC--
Q 045600 715 SLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE--ITYLGVLSACSHAGLVEQSKMVFKSMVE-HG-- 786 (899)
Q Consensus 715 ~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l~~~~~~~g~~~~A~~~~~~m~~-~~-- 786 (899)
--. -+ ++.--...++-+...++-+.|..+|++....++.|+. ..|..++..=+.-|+...+.++-+++.. ..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 665 23 3444456777778888888888889888888667654 5788888888888888888888777652 11
Q ss_pred CccCcchHHHHHHHHhhcCCh
Q 045600 787 ISQKMEHYACMVDLLGRTGHL 807 (899)
Q Consensus 787 ~~p~~~~~~~l~~~~~~~g~~ 807 (899)
..+....-..+++.|.-.+.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 233333334455555444443
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.18 E-value=0.00042 Score=79.89 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=94.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 045600 692 VSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSH 768 (899)
Q Consensus 692 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 768 (899)
.+..+..+|-+.|+.++|.++++++. ..|+.+.|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 44556666666777777777776665 23566666666666666 777777776666542 455
Q ss_pred cCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISG 847 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 847 (899)
.+++.++.++|.++.... |+. ..+..+.+..... .+..--..++.-+...|...++++.++.+++
T Consensus 182 ~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 556667777777766432 222 2222222222111 1122233445556677788888999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHh
Q 045600 848 MLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 848 ~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
.+++.+|.|..+...++..|..
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHHH
Confidence 9999999999999999998883
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3.2e-06 Score=55.30 Aligned_cols=35 Identities=43% Similarity=0.703 Sum_probs=32.7
Q ss_pred eeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc
Q 045600 214 VSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNV 248 (899)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 248 (899)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999974
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.0004 Score=79.47 Aligned_cols=138 Identities=7% Similarity=0.042 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHH
Q 045600 720 DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACM 797 (899)
Q Consensus 720 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 797 (899)
++..+-.|.......|++++|+.+++...+ +.||.. ....+..++.+.+++++|+..+++..+. .|+. ..+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 467777888888889999999999999888 788654 6777777888999999999999988843 4554 777788
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 045600 798 VDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 861 (899)
..++.+.|++++|.++|+++ ...|+ ...+..+...+.+.|+.++|...|+++++...+-...|.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88889999999999999888 34444 567888888888999999999999999888765444443
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0011 Score=63.36 Aligned_cols=176 Identities=9% Similarity=0.101 Sum_probs=124.0
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC-
Q 045600 641 AFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYK- 719 (899)
Q Consensus 641 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 719 (899)
++.+.+.......+......-...|++.+++++|++...... +......=+..+.+..+++-|.+.+++|..-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344555555444443444444445888999999988776521 3333344456678889999999999999954
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHH
Q 045600 720 DAFSWSVMINGYGL----YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYA 795 (899)
Q Consensus 720 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 795 (899)
+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++..... ..++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHH
Confidence 45677777777654 34789999999999874 78899999999999999999999999999999654 33567777
Q ss_pred HHHHHHhhcCChHHHHH-HHHhC-CCCCCHH
Q 045600 796 CMVDLLGRTGHLNEAFI-FVKKL-PCKPSVS 824 (899)
Q Consensus 796 ~l~~~~~~~g~~~~A~~-~~~~~-~~~p~~~ 824 (899)
.++.+-...|...++.+ .+..+ ...|...
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 77777777777655533 33333 3334443
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.03 Score=62.99 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHH
Q 045600 723 SWSVMINGYGLYGDGE---AALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMV 798 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 798 (899)
+-+.|++.+.+.++.. +|+-+++.-.. ..| |..+-..+++.|+--|-+..|.++|+.+--+.+.-|..-|. +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence 4577888999988765 45555555444 345 55566778889999999999999999887666666654332 44
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCC
Q 045600 799 DLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPE----NPGSYVMLHNIYASAGR 872 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~ 872 (899)
..+...|++..+...++.. ++--+ ..-..-++....++|.+.+-.++..--..+.-. -..+-....+.....++
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5566778888888777665 11111 111122333444677776655554333333322 12233556666777788
Q ss_pred hHHHHHHHHHHH
Q 045600 873 WEDAYRVRSCMK 884 (899)
Q Consensus 873 ~~eA~~~~~~~~ 884 (899)
.++-.+.+..|+
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 877777777765
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4e-06 Score=54.81 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.8
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCC
Q 045600 113 FLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDD 147 (899)
Q Consensus 113 ~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 147 (899)
++||++|++|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00037 Score=72.52 Aligned_cols=132 Identities=19% Similarity=0.164 Sum_probs=62.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHH
Q 045600 733 LYGDGEAALELFKQMQLSGVRPNEITYLGVL-SACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEA 810 (899)
Q Consensus 733 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 810 (899)
..|.+++|+..++.+.. -.||...|..+. ..+.+.++.++|.+.++++.. ..|+. .....+.++|.+.|+..+|
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHH
Confidence 34555555555555544 344433333332 245555555555555555552 22332 3333455555555555555
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 811 FIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 811 ~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..++++. ..+.|+..|..|..+|...|+..++.. ..+..|+..|++++|+..+...++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5555544 233344455555555555555443322 233444455555555555555444
No 137
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.07 E-value=0.00087 Score=77.89 Aligned_cols=224 Identities=10% Similarity=0.097 Sum_probs=153.4
Q ss_pred HhHHHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCC---hhHHHHHHHHhHhcCCHHHHHHHHHhcCC-CC-HHHHHHHH
Q 045600 655 NVTVLSIISAGVLINSLNLTHSLMAFVIRK-GLDKH---VAVSNALMDSYVRCGNISMARKLFGSLIY-KD-AFSWSVMI 728 (899)
Q Consensus 655 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~li 728 (899)
...|...+.-....++.+.|.++.++.... ++.-. ...|.+++++-.--|.-+...++|+++.+ -| ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345555666667777778888877777665 44433 33556666666666777778888888762 33 34677888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCc-cCcchHHHHHHHHhhcCCh
Q 045600 729 NGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGIS-QKMEHYACMVDLLGRTGHL 807 (899)
Q Consensus 729 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~ 807 (899)
..|.+.+..++|.++++.|.+. +.-....|...+..+.++++-+.|..++++..+.-.+ -......-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888888888888888874 3334567888888888888888888888888742211 1224445556666788888
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhc-CChHHHHHH
Q 045600 808 NEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMD--PENPGSYVMLHNIYASA-GRWEDAYRV 879 (899)
Q Consensus 808 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~-g~~~eA~~~ 879 (899)
+.+..+|+.. ..+-....|+.++..-.++|+.+.+..+|++++++. |.....++..---|.++ |+-..+..+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 8888888876 333456678888888888888888888888888876 44444444444445543 554433333
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.02 E-value=0.00013 Score=65.98 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=84.2
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 045600 743 LFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK 820 (899)
Q Consensus 743 ~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 820 (899)
.+++..+ ..|+. .....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445544 55643 445556667778888888888888877543 334577778888888888888888888776 334
Q ss_pred C-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 045600 821 P-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSY 860 (899)
Q Consensus 821 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 860 (899)
| +...+..+...+...|+.+.|...++++++.+|+++...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4 456677788888888999999999999999998876644
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0012 Score=62.63 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHhH-HHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHH
Q 045600 634 NKAKQAVAFFTELLGA---G-LEPDNVT-VLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISM 708 (899)
Q Consensus 634 g~~~~A~~l~~~m~~~---g-~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 708 (899)
.+.++.++++.++... | ..|+..+ |.-++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4677777887777642 4 5555544 4445556666777777777777766553 1122222222333445667777
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045600 709 ARKLFGSLIY---KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 709 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~ 785 (899)
|+++++.+.. .|.+++-.-+......|+.-+|++-+.+..+. +.-|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 7777777662 24455555555556666666777666666652 333566666666666666777766666666662
Q ss_pred CCccCc-chHHHHHHHHhhcC---ChHHHHHHHHhC
Q 045600 786 GISQKM-EHYACMVDLLGRTG---HLNEAFIFVKKL 817 (899)
Q Consensus 786 ~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~ 817 (899)
+.|.. ..+..+.+.+...| +.+-|.+++.+.
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23333 33444555544433 333455555544
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.01 E-value=1.6e-05 Score=61.75 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 045600 822 SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG-RWEDAYRVRSCMKRS 886 (899)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~eA~~~~~~~~~~ 886 (899)
++..|..++..+...|++++|+..++++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46678899999999999999999999999999999999999999999999 799999999998763
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00012 Score=71.87 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=92.3
Q ss_pred ccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh-hC--CHHHHHHHHHHHHhcCCCCchhHHH
Q 045600 788 SQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRI-HG--NVELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 788 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~-~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
+-|...|..|..+|.+.|+.++|..-|.+. ...| ++..+..+..++.. .| +..++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345689999999999999999999998887 4443 45556666655533 22 4688999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCccCCCccccc
Q 045600 863 LHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLVG 898 (899)
Q Consensus 863 l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 898 (899)
|+..+..+|++.+|...|+.|.+..+...|.-+.||
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999998887777777665
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.00 E-value=1.7e-05 Score=60.78 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=54.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
++..+...|+++.|+..++++++.+|+++.++..++.++..+|++++|+.+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566788999999999999999999999999999999999999999999999999987554
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=8.3e-05 Score=65.42 Aligned_cols=96 Identities=15% Similarity=0.046 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPEN---PGSYVMLH 864 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 864 (899)
++..++..+.+.|++++|.+.++++ ...|+ ...+..++..+...|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666666666666666655 22222 2345556666777777777777777777776664 45677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 045600 865 NIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 865 ~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
.+|.+.|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777776544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=1.1e-05 Score=65.56 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=61.0
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 045600 804 TGHLNEAFIFVKKL-PCKP---SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRV 879 (899)
Q Consensus 804 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~ 879 (899)
.|++++|+.+++++ ...| +...+..++.++.+.|+++.|+.++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777888877777 2223 455666678888888888888888888 777788888888899999999999999999
Q ss_pred HHHH
Q 045600 880 RSCM 883 (899)
Q Consensus 880 ~~~~ 883 (899)
+++.
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8863
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=8.4e-05 Score=62.09 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=79.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASA 870 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 870 (899)
.+..++..+...|++++|...+++. ...|+ ...+..+...+...|+.+.|...++++.+..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556777888888999998888876 43443 356777788888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 045600 871 GRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 871 g~~~eA~~~~~~~~~~~ 887 (899)
|++++|.+.+++..+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999999887543
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.1e-05 Score=52.16 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 045600 112 VFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPS 145 (899)
Q Consensus 112 ~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p 145 (899)
+.+||++|++|++.|+++.|..+|+.|.+.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.1e-05 Score=52.20 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.6
Q ss_pred ceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 045600 213 LVSCNTLMAGYSFNGLDQEALETFRRILTVGLKP 246 (899)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 246 (899)
+++||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 148
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.93 E-value=0.045 Score=58.00 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhhhhHH
Q 045600 532 VEEAVILLQRMQKEG-VELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVA-DVTFLNALITMYCNCGSTNDGRLCL 609 (899)
Q Consensus 532 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 609 (899)
.+.....++++...- ..|+ -+|...++...+..-++.|..+|.++.+.+..+ ++.++++++.-||. ++..-|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~Af--- 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAF--- 421 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHH---
Confidence 444555555554432 2332 345666777777777777888888777776665 67777777777664 3444455
Q ss_pred HHhhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045600 610 LLFQMGDK---REISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDN--VTVLSIISAGVLINSLNLTHSLMAFVIR 683 (899)
Q Consensus 610 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 683 (899)
++|+.+.. .++.--...+.-+...++-..|..+|++....++.|+. ..|..+|.--+.-|+...+.++-+++..
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44444332 23333344555555566666666666666665444443 3455555555555555555555544443
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.0003 Score=64.13 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHHHHHHcCCccC---cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhhCCHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQK---MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS----ILESLLGACRIHGNVE 840 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~ 840 (899)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|.+.++.. ...|++. ....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666666322 111 122333556666777777777777666 2223332 2334556667777777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 841 LGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 841 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
+|...++.+ ...+..+..+..+|++|.++|++++|+..|++.
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777653 333445677888888999999999998888764
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.00024 Score=74.97 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=97.2
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCH
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLV 772 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~ 772 (899)
..|+..+...++++.|.++++++...++.....++..+...++-.+|++++++..+ ..| |...+......|.+.+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCH
Confidence 45566666778899999999998866666666688888888888899999988886 355 445566666678899999
Q ss_pred HHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 045600 773 EQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKLPCK 820 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 820 (899)
+.|+++.+++. ...|+. .+|..|+.+|...|++++|+..++.++..
T Consensus 251 ~lAL~iAk~av--~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 251 ELALEIAKKAV--ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHH--HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999988 445665 78999999999999999999988887433
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0011 Score=76.48 Aligned_cols=224 Identities=12% Similarity=0.126 Sum_probs=125.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-HhcccCCHHHHHHHHHHHHHhCCCCChhHHHH
Q 045600 617 KREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIIS-AGVLINSLNLTHSLMAFVIRKGLDKHVAVSNA 695 (899)
Q Consensus 617 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 695 (899)
..+...|..|+..+...+++++|.++.++..+. .|+...+..+.. .+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 446778888999998999999999998876664 466544322222 23333333322222 2
Q ss_pred HHHHhHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCH
Q 045600 696 LMDSYVRCGNISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLV 772 (899)
Q Consensus 696 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~ 772 (899)
+++......++.-...+.+.+. ..+...+..+..+|.+.|+.++|..+|+++.+ +.| |....+.+...|... +.
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hH
Confidence 2233333333322333333332 12334556666677777777777777777766 345 445666666666666 67
Q ss_pred HHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 045600 773 EQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFE 851 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 851 (899)
++|.+++.+.+.. |...+++.++.+++.++ ...|+.. +.-.++.+++..
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~---------------d~f~~i~~ki~~ 215 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDF---------------DFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccc---------------hHHHHHHHHHHh
Confidence 7776666665432 44455666666666665 3333221 111112222221
Q ss_pred cC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 045600 852 MD--PENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVP 892 (899)
Q Consensus 852 ~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 892 (899)
.. ..-...+.-|-.-|...++|++++.+++.+.+...+..+
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 11 112334455557777888999999999999886665543
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00042 Score=70.12 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=85.9
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCCHH-HHHHHHH--HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHH
Q 045600 698 DSYVRCGNISMARKLFGSLIYKDAF-SWSVMIN--GYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQ 774 (899)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~ 774 (899)
.++.-.|+.++|.+.-..+.+-|.. .+...++ ++-..++.+.|+..|++.+. +.|+...-...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~---------- 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASM---------- 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhh----------
Confidence 4455566666666665555432221 2222222 23345666777777776665 4554332211110
Q ss_pred HHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHHH
Q 045600 775 SKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV-----SILESLLGACRIHGNVELGEIISGM 848 (899)
Q Consensus 775 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~ 848 (899)
-...++ .+..=.+-..+.|++.+|.+.+.+. .+.|+. ..|........+.|+.++|+...+.
T Consensus 245 ~~k~le------------~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 245 MPKKLE------------VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hHHHHH------------HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 001111 1111223445566666666666555 333332 2333444445566666666666666
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 849 LFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 849 ~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
+++++|.-..+|...++++...++|++|.+.+++..+..
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666666666666666666666665433
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00021 Score=69.63 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=66.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhhCCHHHH
Q 045600 766 CSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV-SILESLLGACRIHGNVELG 842 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a 842 (899)
+.+.+++.+|+..|.+.++ +.|+ ...|..-..+|.+.|.++.|++-.+.. .+.|.. ..|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4556666666666666663 3343 355556666777777777777666665 445543 3566666777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNIYASAGRW 873 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 873 (899)
++.|+++++++|+|.....+|.++-.+.+.-
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 7777777777777776666666555554433
No 154
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.86 E-value=0.05 Score=56.40 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=36.7
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 833 CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
+..+|++.++.-.-.-+.+..| ++.+|..+|-.+..+.+++||.+++..+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4567777777766666666677 6777777777777777787777777654
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=8e-05 Score=79.07 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=82.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHH
Q 045600 763 LSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVE 840 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 840 (899)
...+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..++++ ...| +...+..++.++...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 445677889999999998888533 223467778888888889999998888877 4445 4556777788888888999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 045600 841 LGEIISGMLFEMDPENPGSYVMLHNIYASA 870 (899)
Q Consensus 841 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 870 (899)
.|+..++++++++|+++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999988888888877776665443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00074 Score=61.60 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc--chHHHH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRPNE----ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM--EHYACM 797 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 797 (899)
|..++..+ ..++...+.+.++.+.+. .|+. .....+...+...|++++|...|+.+.+....|+. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33444444 367777777778887773 3432 23334445677888888888888888865522322 234456
Q ss_pred HHHHhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 045600 798 VDLLGRTGHLNEAFIFVKKLPC-KPSVSILESLLGACRIHGNVELGEIISGML 849 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 849 (899)
..++...|++++|+..++.... ...+..+...+..+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888888877632 233445666778888888888888888765
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.3e-05 Score=49.40 Aligned_cols=31 Identities=39% Similarity=0.611 Sum_probs=27.1
Q ss_pred eeHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 045600 214 VSCNTLMAGYSFNGLDQEALETFRRILTVGL 244 (899)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 244 (899)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=3.6e-05 Score=48.48 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 045600 113 FLQNLMIRGLSNCGLHADLLHVYIKCRLSGC 143 (899)
Q Consensus 113 ~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~ 143 (899)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998875
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0008 Score=74.61 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCccccc
Q 045600 822 SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLVG 898 (899)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 898 (899)
++..+..+.-.....|++++|...++++++++| +..+|..+|.+|...|+.++|.+.+++..+.++. .|.+-|.|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~-~pt~~~~~ 493 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG-ENTLYWIE 493 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 445555555555566777777777777777777 4667777777777777777777777777665553 24454443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.00045 Score=65.21 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIY 867 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 867 (899)
.+..++..+...|++++|...+++. ...|+ ...+..++..+...|+++.|+..++++++..|.++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555555555555555544 11111 234566666777777777777777777777777777777777777
Q ss_pred HhcCC--------------hHHHHHHHHHHHhCCC
Q 045600 868 ASAGR--------------WEDAYRVRSCMKRSRL 888 (899)
Q Consensus 868 ~~~g~--------------~~eA~~~~~~~~~~~~ 888 (899)
...|+ +++|.+.+++..+.++
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 77766 4666666666665443
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=97.66 E-value=0.0004 Score=62.07 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=82.3
Q ss_pred CCccCc-chHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 045600 786 GISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 786 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
|+.++. ........-+...|++++|..+|+-+ -..-++..|..|...++..++++.|+..|-.+..++++||...++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 444443 33334555567899999999999876 233356678889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 045600 863 LHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 863 l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
.+..|...|+.++|...|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.0031 Score=56.71 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=65.0
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHH
Q 045600 753 RPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS---VSILES 828 (899)
Q Consensus 753 ~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ 828 (899)
.|....-..|..++...|+..+|...|++...--+.-|....-.+.++....++...|...++++ ...|+ +.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44444444455555555555555555555553223334444445555555555555555555554 11121 112333
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
+.+.+...|....|+..++.+..-.|. +..-...+.-+.++|+.+||..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 445555555555566566555555554 444444555555666555555444443
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00021 Score=69.57 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=82.6
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 045600 798 VDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~e 875 (899)
.+-+.+.+++++|+..+.++ ...|. +..|..-..+|.+-|.++.|++-.+.++.++|....+|.+|+.+|..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 46677899999999999988 66665 45567888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 045600 876 AYRVRSCMKRSRLKK 890 (899)
Q Consensus 876 A~~~~~~~~~~~~~~ 890 (899)
|++.|++..+..+..
T Consensus 168 A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 168 AIEAYKKALELDPDN 182 (304)
T ss_pred HHHHHHhhhccCCCc
Confidence 999999988766544
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=7.4e-05 Score=57.79 Aligned_cols=56 Identities=14% Similarity=0.311 Sum_probs=49.5
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 834 RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
...|+++.|+..++++++.+|+++.+...++.+|.+.|++++|.++++++....++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46899999999999999999999999999999999999999999999998764443
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.00078 Score=59.11 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=65.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCc-c-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGIS-Q-KMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLL 830 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 830 (899)
++..+...+...|++++|...++.+.+.... + ....+..++.++.+.|++++|...++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555666666666666666532211 1 1234555777777777777777777765 22233 34566667
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 045600 831 GACRIHGNVELGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 831 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 861 (899)
..+...|+.+.|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777788888888888888888887765443
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.61 E-value=0.0002 Score=56.34 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=54.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
...+...++++.|.+.++++++.+|+++..+..++.+|.+.|++.+|.+.++...+.+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999999999999999999999999999999999999876663
No 167
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.51 E-value=7.2e-05 Score=47.82 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 045600 846 SGMLFEMDPENPGSYVMLHNIYASAGRWEDAYR 878 (899)
Q Consensus 846 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~ 878 (899)
++++++++|+|+.+|+.|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.51 E-value=0.14 Score=52.00 Aligned_cols=283 Identities=13% Similarity=0.105 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHh--cCChhhhhhHHHHhhcCC---CCChhhHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCH--hH
Q 045600 587 TFLNALITMYCN--CGSTNDGRLCLLLFQMGD---KREISLWNAIIS--VYVQTNKAKQAVAFFTELLGAGLEPDN--VT 657 (899)
Q Consensus 587 ~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t 657 (899)
.-|.+|-.++.. .|+-..|+ ++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |.. ..
T Consensus 83 rgyqALStGliAagAGda~lAR---kmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllG 156 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLAR---KMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLG 156 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHH---HHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHh
Confidence 347788777765 45666666 4443322 334444444443 345579999999999999873 332 23
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-----CCCHHH--HHHHHHH
Q 045600 658 VLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI-----YKDAFS--WSVMING 730 (899)
Q Consensus 658 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~li~~ 730 (899)
+..|.-..-+.|..+.|.++-+..-..-.. -.-...+.++..|..|+++.|+++++.-. .+++.- --.|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 444555566789999999888877666433 23456788999999999999999998654 454431 2223322
Q ss_pred HH---hCCCHHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC
Q 045600 731 YG---LYGDGEAALELFKQMQLSGVRPNEIT-YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH 806 (899)
Q Consensus 731 ~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 806 (899)
-. -.-+...|...-.+..+ +.||... -..-..++.+.|+..++-.+++.+.+....|+ .+. ...+.+.|+
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd 309 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD 309 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC
Confidence 11 22356677776666665 7888754 44445589999999999999999996654444 332 223445565
Q ss_pred hHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CChHHHHHHH
Q 045600 807 LNEAFIFVKKL----PCKPSV-SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASA-GRWEDAYRVR 880 (899)
Q Consensus 807 ~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~eA~~~~ 880 (899)
.- ..-+++. ..+|+. .....+..+....|++..|..-.+.+....|. ..+|..|+++-... |+-.++..++
T Consensus 310 ta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 310 TA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred cH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHH
Confidence 33 3333322 345544 45667778888999999999888888888876 67888888888876 9999888888
Q ss_pred HHHHh
Q 045600 881 SCMKR 885 (899)
Q Consensus 881 ~~~~~ 885 (899)
-+...
T Consensus 387 Aqav~ 391 (531)
T COG3898 387 AQAVK 391 (531)
T ss_pred HHHhc
Confidence 77654
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.00079 Score=63.32 Aligned_cols=91 Identities=15% Similarity=-0.072 Sum_probs=71.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHN 865 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 865 (899)
...|..++..+...|++++|...+++. ...|+ ..++..+...+...|+.++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 356667777788888888888888776 23232 2467888888999999999999999999999999999999999
Q ss_pred HHH-------hcCChHHHHHHHH
Q 045600 866 IYA-------SAGRWEDAYRVRS 881 (899)
Q Consensus 866 ~y~-------~~g~~~eA~~~~~ 881 (899)
+|. ..|++++|+..++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 999 7788775544444
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.003 Score=59.60 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHH
Q 045600 720 DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN--EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYAC 796 (899)
Q Consensus 720 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 796 (899)
....+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+. .|+ ...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344677777788888888888888888876433332 246777777888888888888888888743 333 355666
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 045600 797 MVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGR 872 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 872 (899)
++.++...|+...+..-++.. ...++.|.+.++++.+.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766555433321 123677888999999988886 4445555544443
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.43 E-value=0.0059 Score=62.86 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred HHcc-CCHHHHHHHHHHHHH----cCCccC--cchHHHHHHHHhhcCChHHHHHHHHhCC---C-CC--CHH---HHHHH
Q 045600 766 CSHA-GLVEQSKMVFKSMVE----HGISQK--MEHYACMVDLLGRTGHLNEAFIFVKKLP---C-KP--SVS---ILESL 829 (899)
Q Consensus 766 ~~~~-g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~p--~~~---~~~~l 829 (899)
|... |++++|.+.|++..+ .+ .+. ...+..++..+.+.|++++|.+.+++.. . .+ ... .+-..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 4444 555555555555541 12 111 1444556666666667777766666541 0 01 111 11122
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHh--cCChHHHHHHHHHH
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPEN-----PGSYVMLHNIYAS--AGRWEDAYRVRSCM 883 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~y~~--~g~~~eA~~~~~~~ 883 (899)
+-.+...||...|...+++..+.+|.- ......|..++-. ...+.+|+.-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 233445667777777777777666542 2234445555543 23555555555543
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.0022 Score=68.15 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=76.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhc
Q 045600 727 MINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRT 804 (899)
Q Consensus 727 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 804 (899)
....+...|++++|++.|+++.+ ..| +...|..+..+|...|++++|+..++++++. .|+ ...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 34566778899999999999887 567 4457777777888999999999999988854 343 46788888889999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 045600 805 GHLNEAFIFVKKL-PCKPSVSILESLL 830 (899)
Q Consensus 805 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 830 (899)
|++++|...++++ ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999988887 5566655444443
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.017 Score=57.57 Aligned_cols=171 Identities=14% Similarity=0.057 Sum_probs=100.8
Q ss_pred HHHHhHhcCCHHHHHHHHHhcC--CCCH-HH---HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHH
Q 045600 696 LMDSYVRCGNISMARKLFGSLI--YKDA-FS---WSVMINGYGLYGDGEAALELFKQMQLSGVRPNE--ITYLGVLSACS 767 (899)
Q Consensus 696 li~~~~~~g~~~~A~~~~~~~~--~~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l~~~~~ 767 (899)
....+...|++++|.+.|+++. .|+. .. .-.++.++.+.+++++|+..+++..+ ..|+. ..|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 3444556777777777777775 2322 22 23455666777777777777777776 44432 23444444433
Q ss_pred c--cC---------------CH---HHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 045600 768 H--AG---------------LV---EQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILE 827 (899)
Q Consensus 768 ~--~g---------------~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 827 (899)
. .+ +. .+|.+.|++++ +.|-...-..+|...+..+...- ..--.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHHH-HHHHH
Confidence 1 11 11 12333333333 22322333334433332221000 00112
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPEN---PGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.....|.+.|++..|+.-++.+++..|+. +.++..++.+|.+.|..++|.++.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44567889999999999999999999874 5577889999999999999999988765
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.39 E-value=0.21 Score=50.95 Aligned_cols=255 Identities=14% Similarity=0.111 Sum_probs=134.7
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH--hcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 623 WNAIISVYVQ--TNKAKQAVAFFTELLGAGLEPDNVTVLSIISA--GVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 623 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
|.+|-.++.. .|+-..|..+-.+-.+. +..|...+..++.+ ..-.|+++.|.+-|+.|...--. ..--...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEt-RllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPET-RLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHH-HHHhHHHHHH
Confidence 3344444433 34555555544443322 34555556666654 34457777777777776653100 0001122222
Q ss_pred HhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChh--HHHHHHHHH--H-cc
Q 045600 699 SYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSG-VRPNEI--TYLGVLSAC--S-HA 769 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~l~~~~--~-~~ 769 (899)
.--+.|..+.|...-++.- .| -...+...+...|..|+|+.|+++++.-++.. +.++.. .-..|+.+- . -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 2335666666666666554 22 23456667777777777777777776655533 344432 222333321 1 12
Q ss_pred CCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHH-HHHH
Q 045600 770 GLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELG-EIIS 846 (899)
Q Consensus 770 g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~ 846 (899)
-+...|...-.+.. .+.|+. ..-..-..+|.+.|+..++-.+++.+ +..|-+.++..+..+ +.||.... .+-.
T Consensus 243 adp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHHHHHH
Confidence 23444544444433 344554 22333456677777777777777776 666666665544433 45553222 2334
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 847 GMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 847 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
+++.++.|+|......++.+-...|++..|..--+..
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 5555666777777777777777777776665544443
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.38 E-value=0.0012 Score=66.21 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL-PCKPSV----SILESLLGACRIHGNVELGEIISGMLFEMDPEN---PGSYVMLHN 865 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 865 (899)
|...+..+.+.|++++|...|+++ ...|+. ..+..++..+...|+++.|...++++.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333344556666666666655 233332 345556666677777777777777777666653 445556677
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC
Q 045600 866 IYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 866 ~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+|...|++++|.++|+++.+..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 77777777777777777765444
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.008 Score=66.79 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 045600 718 YKDAFSWSVMINGYGL--YG---DGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHA--------GLVEQSKMVFKSMV 783 (899)
Q Consensus 718 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~--------g~~~~A~~~~~~m~ 783 (899)
..|...|...+.+... .+ +.++|+.+|++..+ ..|+. ..|..+..++... .++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666666655332 22 36678888888887 67864 3555444433221 12334444444433
Q ss_pred Hc-CCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 784 EH-GISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 784 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
.. ....+...|..+.......|++++|...++++ ...|+...|..++..+...|+.++|...++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 22 12334467777777777889999999999988 67788888888899999999999999999999999999885
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.011 Score=60.77 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=65.9
Q ss_pred chHHHHHHHHhhc-CChHHHHHHHHhC------CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-----
Q 045600 792 EHYACMVDLLGRT-GHLNEAFIFVKKL------PCKPS--VSILESLLGACRIHGNVELGEIISGMLFEMDPENP----- 857 (899)
Q Consensus 792 ~~~~~l~~~~~~~-g~~~~A~~~~~~~------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----- 857 (899)
..+..+...|... |++++|++.+++. ...+. ...+..+...+.+.|++++|+..++++....-+++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3455577788887 8999998888776 11221 22466777888999999999999999987654322
Q ss_pred --hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 858 --GSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 858 --~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
..+...+-++...|+...|.+.+++..+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 13445666788899999999999998753
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.00077 Score=51.43 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=49.0
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 045600 797 MVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENP 857 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 857 (899)
++..+.+.|++++|.+.+++. ...|+ ...+..++..+...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788889999999998888 55564 45678888888999999999999999999999875
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.32 Score=50.43 Aligned_cols=107 Identities=11% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccC
Q 045600 590 NALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLIN 669 (899)
Q Consensus 590 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 669 (899)
+..+.-+...|....|. ++......|+...|-..+.+++..++|++-..+... +-+++.|..++.+|...|
T Consensus 181 ~~Ti~~li~~~~~k~A~---kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAE---KLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCCHHHHH---HHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 33445555667777777 777777777888888888888888888766654332 223467777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHh
Q 045600 670 SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGS 715 (899)
Q Consensus 670 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 715 (899)
...+|..+...+ .+..-+..|.++|++.+|.+.--+
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777766551 124556677777777777665443
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.25 E-value=0.003 Score=52.36 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 854 (899)
.+..++.++...|++++|.+.+++. ...| +...+..+...+...|+.+.|...++.+.+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444444555554444443 1112 223444444555555555555555555555444
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.012 Score=56.20 Aligned_cols=133 Identities=9% Similarity=-0.034 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHH-----HH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYA-----CM 797 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~l 797 (899)
.-+.++..+.-.|.+.-...++++..+..-+-+......|.+.-.+.||.+.|..+|++..+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555666666666667776664333355556666666666777777777777655322222222222 22
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 798 VDLLGRTGHLNEAFIFVKKLP-CK-PSVSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
...|.-++++.+|...+.++. .. .++...++-.-...--|+..+|++..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 333444555555555555551 11 12222222222223345555555555555555554
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.21 E-value=0.01 Score=60.84 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHH
Q 045600 722 FSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSA-CSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDL 800 (899)
Q Consensus 722 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 800 (899)
.+|..++....+.+..+.|.++|++..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888888888888887432 1133344444443 33456677788888888753 34456778888888
Q ss_pred HhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 801 LGRTGHLNEAFIFVKKL-PCKPSV----SILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
+.+.|+.+.|..+|++. ..-|.. ..|..++..-.+.|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88899999999999887 333333 47899999999999999999999999998887443
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.37 Score=49.99 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=74.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCC
Q 045600 692 VSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGL 771 (899)
Q Consensus 692 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~ 771 (899)
+.+..+.-+...|+...|.++..+..-|+..-|...+.+++..++|++-.++.+. +-.+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445556666777778888887777777777888888888888888776655332 1233667777777777777
Q ss_pred HHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHh
Q 045600 772 VEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 772 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
..+|..+..++ .+..-+..|.+.|.+.+|.+.--+
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776651 124566777777877777666444
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.18 E-value=0.036 Score=49.64 Aligned_cols=94 Identities=6% Similarity=-0.048 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHH
Q 045600 721 AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVD 799 (899)
Q Consensus 721 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 799 (899)
......+...+...|++++|.++|+-+.. +.|.. .-|..|..++-..|++++|...|....... +.++..+..+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444455555666666666666666665 55633 344444445556666666666666666433 233456666666
Q ss_pred HHhhcCChHHHHHHHHhC
Q 045600 800 LLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 800 ~~~~~g~~~~A~~~~~~~ 817 (899)
++...|+.+.|.+-|+..
T Consensus 112 c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 112 CYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666666666553
No 185
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.13 E-value=0.00086 Score=54.35 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHH
Q 045600 734 YGDGEAALELFKQMQLSGV-RPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAF 811 (899)
Q Consensus 734 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 811 (899)
.|+++.|+.+++++.+..- .|+...+..+..+|.+.|++++|..++++ . ...|.. .....++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4666777777777766321 11233344455666666666666666666 2 222222 33334466666666666666
Q ss_pred HHHHh
Q 045600 812 IFVKK 816 (899)
Q Consensus 812 ~~~~~ 816 (899)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 186
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.13 E-value=0.15 Score=49.46 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=53.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCccccc
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPENPG---SYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLVG 898 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 898 (899)
.+.+.|.++|.+..|+.-++.+++..|+.+. ++..+..+|.+.|-.++|.+.-+-+.. ..|.-.|.+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~----N~p~s~~~~ 241 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA----NYPDSQWYK 241 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh----cCCCCcchh
Confidence 4457889999999999999999999877544 667788899999999999999888765 334444654
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.12 E-value=0.0053 Score=65.24 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh--CCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC----CCCHHH
Q 045600 650 GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK--GLDKHVAVSNALMDSYVRCGNISMARKLFGSLI----YKDAFS 723 (899)
Q Consensus 650 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 723 (899)
+.+.+...+..++..+....+++.+..++-+.... ....-..+..+++..|.+.|..+++.++++.=. -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45566667777777777777777777766666654 222223333466666666666666666665433 456666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHA 769 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 769 (899)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666555555555555555544443
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.11 E-value=0.018 Score=54.03 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHH
Q 045600 721 AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN--EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACM 797 (899)
Q Consensus 721 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 797 (899)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...+++.... .|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566666677777888888888887776322221 235666666777777777777777777643 233 2445555
Q ss_pred HHHHh
Q 045600 798 VDLLG 802 (899)
Q Consensus 798 ~~~~~ 802 (899)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.09 E-value=0.0022 Score=67.27 Aligned_cols=65 Identities=14% Similarity=-0.027 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 822 SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGS---YVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
+...+..+..++...|++++|+..++++++++|+++.+ |++++.+|.++|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567788888888888888888888888888887744 888888888888888888888887764
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.051 Score=58.50 Aligned_cols=210 Identities=13% Similarity=0.116 Sum_probs=101.2
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 045600 473 HAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMV 552 (899)
Q Consensus 473 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 552 (899)
++.+.+.|-.|+... +.+.++-.|++.+|-++|. ++|....|+++|..|+.-
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH-------
Confidence 344455555555433 2344555777888777764 456666777777666531
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHH
Q 045600 553 TLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQ 632 (899)
Q Consensus 553 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 632 (899)
-...-+...|..++-..+.++-.+ +..+..--.+...++...|+.++|. . .+..
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi---~------------------i~~d 728 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAI---E------------------ICGD 728 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhh---h------------------hhhc
Confidence 112233344444443333322111 0001111123344555566665554 1 1222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHH
Q 045600 633 TNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKL 712 (899)
Q Consensus 633 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 712 (899)
+|-.+-+.++-+++-. .+..+...+..-+.+...+..|-++|..|-.. ..++++....+++++|..+
T Consensus 729 ~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhh
Confidence 3333333333333222 22233333333344455556666666655322 4567777788888888888
Q ss_pred HHhcC--CCCHH-H----------HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045600 713 FGSLI--YKDAF-S----------WSVMINGYGLYGDGEAALELFKQMQL 749 (899)
Q Consensus 713 ~~~~~--~~~~~-~----------~~~li~~~~~~g~~~~A~~~~~~m~~ 749 (899)
-++.+ .+|+. . +...-.+|.++|+-.+|.++++++..
T Consensus 796 Ae~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 796 AEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 88877 33332 1 11222344455555555555555543
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.05 E-value=0.0065 Score=52.33 Aligned_cols=86 Identities=17% Similarity=0.079 Sum_probs=50.0
Q ss_pred HHHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 045600 797 MVDLLGRTGHLNEAFIFVKKL---PCKPS--VSILESLLGACRIHGNVELGEIISGMLFEMDPE---NPGSYVMLHNIYA 868 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 868 (899)
+..++-..|+.++|+.++++. +.... ...+-.+...+...|++++|..++++..+..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 444555555666666555544 11111 123444556666666666677666666666666 5555666666777
Q ss_pred hcCChHHHHHHHHH
Q 045600 869 SAGRWEDAYRVRSC 882 (899)
Q Consensus 869 ~~g~~~eA~~~~~~ 882 (899)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777766544
No 192
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.03 E-value=0.92 Score=51.65 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=98.7
Q ss_pred ccCChhhhhHHHHHHHHhCCCCCcchhhHHHHh--hhcCCChhhHHHHHhhcC---CCCcccHHHHHHHHHcCCChhHHH
Q 045600 260 RLGHFCFGKSLHGFTIKSGYLFDDFLVPALISM--YAGDLDLSTARKLFDSLL---EKNASVWNAMISAYTQSKKFFEAF 334 (899)
Q Consensus 260 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 334 (899)
..+++..|.+..+.+.+.. |+.- |...+.+ ..+.|+.++|..+++... ..|..|...+-..|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 4455566666555555442 2211 1112222 235555666655555442 124445555555566666666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 045600 335 EIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRN 414 (899)
Q Consensus 335 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 414 (899)
.+|++..+. -|+......+..++.+.+++..-. ..|.++++..++.-
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ-------------------------------kaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ-------------------------------KAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHhCCccc
Confidence 666655432 344444444444444443333222 23344444333332
Q ss_pred cchHHHHHHHHHHC-CC---------hhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCChHHHHHHHHH-HHHhCCC
Q 045600 415 LLCWNAMMSAYVRN-RF---------WDASLAVFRQMQFAG-LNPDAVSIISVLSGCSKLDDVLLGKSAHAF-SLRKGIV 482 (899)
Q Consensus 415 ~~~~~~li~~~~~~-g~---------~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~g~~ 482 (899)
-.-|+ +++...+. .. ..-|.+.++.+.+.+ -.-+..-...-+..+...|..++|..++.. ..+.-..
T Consensus 145 yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 145 YYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred chHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 22232 22222221 11 112344455554433 111222223333444556667777776633 3333333
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhcCC
Q 045600 483 SNLDVLNALLMFYSDGGQFSYAFTLFHRMST 513 (899)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (899)
.+...-+--++.+...+++.+..++-.++..
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444455566666677777666655555443
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.01 E-value=0.0071 Score=49.90 Aligned_cols=83 Identities=12% Similarity=0.190 Sum_probs=49.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCH
Q 045600 558 LPNLNKNGNIKQGMVIHGYAIKTGC-VADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKA 636 (899)
Q Consensus 558 l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 636 (899)
|..|...+++.....+|+.+++.|+ .|++.+|+.++...++..--..+. .++.
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i--------------------------e~kl 85 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI--------------------------ENKL 85 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH--------------------------HHHH
Confidence 3344444555555555555555555 555555555555544322111110 1234
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHhc
Q 045600 637 KQAVAFFTELLGAGLEPDNVTVLSIISAGV 666 (899)
Q Consensus 637 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 666 (899)
.+.+.+|+.|...+++|+..||+.++..+.
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 567788999999999999999998887654
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.01 E-value=0.59 Score=48.90 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=66.5
Q ss_pred hHhcCC-HHHHHHHHHhcC---CCCHHHHHHHHH----HHHh---CCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHH
Q 045600 700 YVRCGN-ISMARKLFGSLI---YKDAFSWSVMIN----GYGL---YGDGEAALELFKQMQLSGVRPNE----ITYLGVLS 764 (899)
Q Consensus 700 ~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l~~ 764 (899)
+-+.|. -++|..+++.+. .-|...-|.... +|.. ...+.+-+++-+-+.+.|+.|-. ..-|.|..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 444444 666777777665 223333332221 1211 12333444444455566776632 23444444
Q ss_pred --HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 045600 765 --ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLP 818 (899)
Q Consensus 765 --~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 818 (899)
.+...|++.++.-+-.-+. .+.|++.+|..++-++....++++|.+++.+++
T Consensus 469 AEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3556777777765544444 567777888888888888888888888888763
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.00 E-value=0.0055 Score=62.04 Aligned_cols=255 Identities=15% Similarity=0.054 Sum_probs=147.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhH----HHHHHHHhcccCCHHHHHHHHHHHH--Hh--CCC-CChhHHHHHHHHh
Q 045600 630 YVQTNKAKQAVAFFTELLGAGLEPDNVT----VLSIISAGVLINSLNLTHSLMAFVI--RK--GLD-KHVAVSNALMDSY 700 (899)
Q Consensus 630 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~~ 700 (899)
+|+.|+....+.+|+...+.| .-|..| |.-|-.+|.-.+++++|+++...=+ .+ |-+ -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 456666666666666666655 233333 3333344555566666666544311 11 111 0122223333444
Q ss_pred HhcCCHHHHHHHHHhcCC---------CCHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHH--
Q 045600 701 VRCGNISMARKLFGSLIY---------KDAFSWSVMINGYGLYGD--------------------GEAALELFKQMQL-- 749 (899)
Q Consensus 701 ~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~-- 749 (899)
--.|.+++|.-.-.+-.. -....+..+...|...|+ ++.|.+.|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666544333220 012233344444443331 2334444443222
Q ss_pred --cCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH----HcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC----
Q 045600 750 --SGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV----EHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL---- 817 (899)
Q Consensus 750 --~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---- 817 (899)
.|-.. -...|..|...|.-.|+++.|+..-+.=. +.|-+... ..+..+.+++.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 12356666667777789999887665322 44433333 67888999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 818 ---P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMD------PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 818 ---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+ .......-.+|.+.|..-.++++|+.+.++=+.+- .....++..|+++|...|..++|+.+.+.-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 22334456678888888888999988877655442 33566899999999999999999988876654
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.87 Score=50.74 Aligned_cols=328 Identities=12% Similarity=0.049 Sum_probs=172.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 045600 520 NTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGN---IKQGMVIHGYAIKTGCVADVTFLNALITMY 596 (899)
Q Consensus 520 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 596 (899)
..+|+-+...+.+..|+++-.-+...-..- ...|.....-+.+..+ -+.+..+-+++.. ... +...|..+....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~~-~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KLT-PGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cCC-CceeHHHHHHHH
Confidence 345666777777777777766664321111 3344444444433322 1222222222221 122 234455566666
Q ss_pred HhcCChhhhhhHHHHhhcCCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCH
Q 045600 597 CNCGSTNDGRLCLLLFQMGDKR-----EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSL 671 (899)
Q Consensus 597 ~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 671 (899)
..+|+.+-|..+++.-...... +..-+...+.-..+.|+.+-...++-+|..+- +...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------Hhc
Confidence 6778887777322222111111 22234445555566666666666655555431 111111111 122
Q ss_pred HHHHHHHHHHHHh-CCCCChhHHHHHHHHhHhcCCHHHHHHHH-Hhc-----CCCCHHHHHHHHHHHHhCCCH-------
Q 045600 672 NLTHSLMAFVIRK-GLDKHVAVSNALMDSYVRCGNISMARKLF-GSL-----IYKDAFSWSVMINGYGLYGDG------- 737 (899)
Q Consensus 672 ~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~-----~~~~~~~~~~li~~~~~~g~~------- 737 (899)
..|..++.+..+. +-. .+-+.|-...+..++-.+. +.. ..+-........+.+.+....
T Consensus 589 p~a~~lY~~~~r~~~~~-------~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRA-------TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhhHHHHHHHHhhchh-------hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 3344444444332 211 1122222222222211111 110 011112223333444443331
Q ss_pred ---HHHHHHHHHHHH-cCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHH
Q 045600 738 ---EAALELFKQMQL-SGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIF 813 (899)
Q Consensus 738 ---~~A~~~~~~m~~-~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 813 (899)
.+-+++.+.+.. .|..-...+.+--+.-+..-|...+|.++-.+.+ .||...|-.-+.+++..++|++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 112223333322 1333444566666777888899999998887754 67888888899999999999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045600 814 VKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRS 881 (899)
Q Consensus 814 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~ 881 (899)
-++.+. +..|.-+...|.+.|+.++|.+++-++ ++.+ ....+|.+.|++.||.+.--
T Consensus 738 Akskks---PIGy~PFVe~c~~~~n~~EA~KYiprv----~~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRV----GGLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccCC---CCCchhHHHHHHhcccHHHHhhhhhcc----CChH----HHHHHHHHhccHHHHHHHHH
Confidence 887632 556777889999999999988876554 2222 78889999999999987643
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.00 E-value=0.0011 Score=51.15 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 045600 768 HAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS 822 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 822 (899)
..|++++|.++|+++.+.. +-+...+..++.+|.+.|++++|.++++++ ...|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555322 112344444555555555555555555554 33344
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.83 Score=50.18 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=74.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-----CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 045600 390 LLSMYAKLGNIDSAKFLFDQIPNR-----NLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLD 464 (899)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 464 (899)
.|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..-... ...+.++.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le 836 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLE 836 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHH
Confidence 456666777777777766654321 1236777777777777777777766553211 11223333333
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045600 465 DVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRM 542 (899)
Q Consensus 465 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 542 (899)
++++-+.+- ..++.+....-.+.+++.+.|.-++|.+.+-+-..|. +.+..|...++|.+|.++-+..
T Consensus 837 ~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 837 LFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 322222211 2234555566667777777777777777665555442 2344556666666666665544
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.91 E-value=0.04 Score=49.81 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=91.2
Q ss_pred CCccCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhH
Q 045600 786 GISQKMEHYACMVDLLGRTGHLNEAFIFVKKL---PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPE--NPGSY 860 (899)
Q Consensus 786 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 860 (899)
.+.|+...-..|.+++.+.|+..||...+++. .+.-|...+..+.++....++...|...++++.+-+|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45788877888999999999999999999987 46678888899999999999999999999999999986 67788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 861 VMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 861 ~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
..++.+|..+|++.+|...|+......+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 8899999999999999999998876544
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.89 E-value=0.016 Score=47.94 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCccCcchH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGV-RPNEITYLGVLSACSHAG--------LVEQSKMVFKSMVEHGISQKMEHY 794 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~ 794 (899)
-...|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999776543 344678889999988999999999
Q ss_pred HHHHHHHhh
Q 045600 795 ACMVDLLGR 803 (899)
Q Consensus 795 ~~l~~~~~~ 803 (899)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999888765
No 201
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.87 E-value=0.096 Score=44.55 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=86.0
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc---chHHHHHHHHhhcCCh
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM---EHYACMVDLLGRTGHL 807 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~ 807 (899)
..-.|.+++..++..+.... .+..-++.++--...+-+-+-..+.++.+ |-..|. .....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc-
Confidence 34568888888888887752 24445555554444444444444444443 333332 344456666666554
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 808 NEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 808 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
++......+.....+|+-+.-.++++.+.+.+..+|..+.-++.+|.+.|+..+|.+++.++=++|
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334455667788899999999999999988777889999999999999999999999999999999
Q ss_pred Cc
Q 045600 888 LK 889 (899)
Q Consensus 888 ~~ 889 (899)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 85
No 202
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.39 Score=49.48 Aligned_cols=86 Identities=9% Similarity=-0.026 Sum_probs=59.9
Q ss_pred HhHhcCCHHHHHHHHHhcC--C-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccC
Q 045600 699 SYVRCGNISMARKLFGSLI--Y-----KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAG 770 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~--~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g 770 (899)
-..+.|++.+|.+.+.+.+ . ++...|.....+..+.|+..+|+.--++..+ +.|.- ..|..-..++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 3567888999999888876 2 2445676777777888899999888887765 33322 23333334566778
Q ss_pred CHHHHHHHHHHHHHcC
Q 045600 771 LVEQSKMVFKSMVEHG 786 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~ 786 (899)
+|++|.+-++...+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888888877443
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=1.2 Score=49.15 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=70.9
Q ss_pred CCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCChHHHHHH
Q 045600 498 GGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELD----MVTLISFLPNLNKNGNIKQGMVI 573 (899)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~ 573 (899)
-|++++|.+++-.+.++|.. |..+.+.|++-...++++. -|-..| ...++.+...++....+++|.++
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888898888888777653 4555666777666555542 111122 23566666666666677777776
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 045600 574 HGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFT 644 (899)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 644 (899)
+...... ...+++|.+...+++-+ .+....+ .+....-.+...+.+.|.-++|.+.|-
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE---~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELE---VLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHH---HHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 6543221 23444555444444443 3333322 244445556666666666666665553
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.2 Score=54.17 Aligned_cols=191 Identities=13% Similarity=0.136 Sum_probs=95.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHH
Q 045600 391 LSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGK 470 (899)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 470 (899)
.+.++-.|++.+|-++|.+ +|.-..|+++|.+|+-- -..+-+...|+.++-+
T Consensus 639 A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHH
Confidence 3445566778888777755 56666777777766521 1122233334443333
Q ss_pred HHHHHHHH--hCC-CCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045600 471 SAHAFSLR--KGI-VSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGV 547 (899)
Q Consensus 471 ~~~~~~~~--~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 547 (899)
.+.+.--+ ..+ +|. +-..++...|+.++|..+. ..+|-.+-+.++-+++..
T Consensus 691 mL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~--- 744 (1081)
T KOG1538|consen 691 MLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK--- 744 (1081)
T ss_pred HHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch---
Confidence 33222111 111 121 1223444556665555442 334444444444444322
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHH
Q 045600 548 ELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAII 627 (899)
Q Consensus 548 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 627 (899)
.+..+...+...+.+...+..|-++|..|-. ...++++....++|++|. .+.++.++--...|-.-.
T Consensus 745 -~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAF---alAe~hPe~~~dVy~pya 811 (1081)
T KOG1538|consen 745 -AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAF---ALAEKHPEFKDDVYMPYA 811 (1081)
T ss_pred -hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhH---hhhhhCccccccccchHH
Confidence 2333444444445555666667777766543 245677777778888877 666666553222222222
Q ss_pred -------------HHHHHcCCHHHHHHHHHHHHH
Q 045600 628 -------------SVYVQTNKAKQAVAFFTELLG 648 (899)
Q Consensus 628 -------------~~~~~~g~~~~A~~l~~~m~~ 648 (899)
.+|.+.|+-.+|..+++++..
T Consensus 812 qwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 344455555555555555433
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.77 E-value=0.16 Score=53.04 Aligned_cols=160 Identities=18% Similarity=0.061 Sum_probs=99.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCC-------CHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYK-------DAFSWSVMINGYGL---YGDGEAALELFKQMQLSGVRPNEITYLGVL 763 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 763 (899)
..++-.|....+++.-.++++.+... ....-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677777888888888877632 12222234445555 788888888888876666677777888777
Q ss_pred HHHH----c-----cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHH----HHHHH---HhC-------CCC
Q 045600 764 SACS----H-----AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNE----AFIFV---KKL-------PCK 820 (899)
Q Consensus 764 ~~~~----~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-------~~~ 820 (899)
+.|- . ....++|...|.+.- .+.|+...=..++..+...|...+ ..++. ..+ ...
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF--e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF--EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH--cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 7653 2 224667777777755 233544333344445555553222 22222 111 122
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 821 PSVSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
.+.-.+.+++.++.-.||.++|.+.++++.++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 33334568889999999999999999999998776
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.76 E-value=0.031 Score=59.50 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=89.8
Q ss_pred hhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCC
Q 045600 612 FQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGA--GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKH 689 (899)
Q Consensus 612 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 689 (899)
|.....-+......++..+....+.+++..++.+.+.. ....-..|..++++.|.+.|..+.+..+++.=..-|+-||
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 33333445566667777777777788888888888765 2323344556888999999999999998888888899999
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhC
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLI----YKDAFSWSVMINGYGLY 734 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 734 (899)
..++|.|++.+.+.|++..|.++...|. ..+..++.-.+.+|.+-
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888775 23445554444444443
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.75 E-value=0.69 Score=45.94 Aligned_cols=194 Identities=19% Similarity=0.155 Sum_probs=120.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLI-----YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLS 764 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 764 (899)
...+......+...+++..+...+.... ......+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3445555666666666666666665543 2234455556666666667777777777776632222 122222222
Q ss_pred -HHHccCCHHHHHHHHHHHHHcCCcc----CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhh
Q 045600 765 -ACSHAGLVEQSKMVFKSMVEHGISQ----KMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS--VSILESLLGACRIH 836 (899)
Q Consensus 765 -~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 836 (899)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56777777777777777753 222 1233333444456677777777777766 33333 45566666777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
++.+.+...+..+.+..|.....+..++..+...|++++|...+++..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788888888888877776667777777777666777777777776543
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.74 E-value=0.0029 Score=48.90 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=48.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCC
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHG-NVELGEIISGMLFEMDP 854 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 854 (899)
+..|..++..+...|++++|+..+++. ...|+ +..+..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777778888888888888887776 44454 446777777788888 68888888888888877
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.72 E-value=0.0029 Score=50.39 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 825 ILESLLGACRIHGNVELGEIISGMLFEMD-------PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
++..+...+...|++++|+..+++++++. |.-..++..++.+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666677777777777777666542 22356889999999999999999999998764
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.70 E-value=0.0028 Score=43.55 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045600 824 SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHN 865 (899)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 865 (899)
..+..+...+...|+.+.|++.++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999999999988865
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.68 E-value=0.13 Score=49.79 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=89.2
Q ss_pred HHHhHhcCCHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHc
Q 045600 697 MDSYVRCGNISMARKLFGSLI--YKD----AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE--ITYLGVLSACSH 768 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l~~~~~~ 768 (899)
...+...|++++|.+.|+.+. -|+ ....-.++.++.+.|+++.|+..+++..+ ..|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHH
Confidence 344556677777777777765 121 23444566667777777777777777666 34432 223333333222
Q ss_pred cCCHHHHHHHHHHHHHcCCc---cCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGIS---QKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEII 845 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 845 (899)
........ ....... .-...+..++.-|-......+|...+..+...- ...-..++..|.+.|.+..|..-
T Consensus 90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 11111000 0000000 001223334444444444444444433331000 00122345778999999999999
Q ss_pred HHHHHhcCCCCch---hHHHHHHHHHhcCChHHHHH
Q 045600 846 SGMLFEMDPENPG---SYVMLHNIYASAGRWEDAYR 878 (899)
Q Consensus 846 ~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~eA~~ 878 (899)
++.+++..|+.+. ++..++.+|.+.|..+.|..
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999998654 67889999999999885543
No 212
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.68 E-value=0.052 Score=55.62 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-hcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 045600 621 SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISA-GVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDS 699 (899)
Q Consensus 621 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 699 (899)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777777777777888888888887543 2233333333332 33346666688888877766 22356667777788
Q ss_pred hHhcCCHHHHHHHHHhcCC--C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 045600 700 YVRCGNISMARKLFGSLIY--K----DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLS 764 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 764 (899)
+.+.++.+.|..+|++... + ....|...+..-.+.|+.+.+.++.+++.+ ..|+......++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 8888888888888887762 2 234777888777778888888888877777 4555444444433
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.64 E-value=0.037 Score=48.58 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=72.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch---hHHHHHHH
Q 045600 795 ACMVDLLGRTGHLNEAFIFVKKL----PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG---SYVMLHNI 866 (899)
Q Consensus 795 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~ 866 (899)
..-+....+.|++++|.+.++.+ +..| ....-..++.++.+.++++.|...+++.++++|.++. +++..|-+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33455566889999999998887 2222 2234567888999999999999999999999988765 67777878
Q ss_pred HHhcCC---------------hHHHHHHHHHHHhCCC
Q 045600 867 YASAGR---------------WEDAYRVRSCMKRSRL 888 (899)
Q Consensus 867 y~~~g~---------------~~eA~~~~~~~~~~~~ 888 (899)
+..+.. ..+|...|+.+++.-+
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 888776 8889999998886444
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.63 E-value=0.02 Score=53.73 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=75.0
Q ss_pred HHHHhc--CCCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC-------------
Q 045600 711 KLFGSL--IYKDAFSWSVMINGYGL-----YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAG------------- 770 (899)
Q Consensus 711 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g------------- 770 (899)
+.|+.. ...+..+|..+++.+.+ .|..+-....++.|.+-|+.-|..+|+.|+..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 25567777777777764 3677888888899999999999999999998775422
Q ss_pred ---CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC
Q 045600 771 ---LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH 806 (899)
Q Consensus 771 ---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 806 (899)
+-+-|+.++++|..+|+-||.+++..+++++.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345688999999999999999999999999977664
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.60 E-value=0.026 Score=56.68 Aligned_cols=90 Identities=10% Similarity=0.129 Sum_probs=57.0
Q ss_pred HccCCHHHHHHHHHHHHHcCCccCc----chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhC
Q 045600 767 SHAGLVEQSKMVFKSMVEHGISQKM----EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLLGACRIHG 837 (899)
Q Consensus 767 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g 837 (899)
.+.|++++|...|+.+++.. |+. ..+..++.+|...|++++|...|+++ ...|+ +..+..++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 34455555555555555322 221 34556777777777777777777766 22232 334555666677788
Q ss_pred CHHHHHHHHHHHHhcCCCCch
Q 045600 838 NVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 838 ~~~~a~~~~~~~~~~~p~~~~ 858 (899)
+.+.|...++++++..|++..
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCHH
Confidence 888888888888888887654
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0099 Score=60.96 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=88.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-----cCCcc---------CcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHH
Q 045600 762 VLSACSHAGLVEQSKMVFKSMVE-----HGISQ---------KMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSI 825 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~ 825 (899)
-...|.+.|++..|...|++.+. .+..+ -...+..+.-++.+.+++.+|++...+. . .+++...
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 45678899999999999888652 11111 1245666777778888888888877766 3 3445556
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDA-YRVRSCMKR 885 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA-~~~~~~~~~ 885 (899)
+.--+.++...|+++.|...++++++++|+|..+-..|+.+-.+..++.+. .+.|..|-.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666777788888888888888888888888888877777777766655554 567777753
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.14 Score=49.22 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhC-----CCCChhHHHH
Q 045600 621 SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKG-----LDKHVAVSNA 695 (899)
Q Consensus 621 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~ 695 (899)
..-+.++..+.-.|.+.-.++.+++.++...+-++.....|.+...+.|+.+.|..+|+...+.. .+-...+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456677777788899999999999998767777778888888899999999999999877653 2223333333
Q ss_pred HHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Q 045600 696 LMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGV 762 (899)
Q Consensus 696 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 762 (899)
....|.-++++.+|...+.+++ ..|+..-|.-.-+..-.|+..+|++..+.|.+ ..|...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 4455666788899999998887 33556666555556667899999999999988 56655544433
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.069 Score=48.72 Aligned_cols=60 Identities=27% Similarity=0.315 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 825 ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.+..++..+...|+++.|+..+++++..+|-+...+..++.+|...|+..+|+++|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677788899999999999999999999999999999999999999999999999774
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.41 E-value=0.0065 Score=61.57 Aligned_cols=219 Identities=15% Similarity=0.087 Sum_probs=143.4
Q ss_pred hcccCCHHHHHHHHHHHHHhCCC---CChhHHHHHHHHhHhcCCHHHHHHHHHhcC-------C--CCHHHHHHHHHHHH
Q 045600 665 GVLINSLNLTHSLMAFVIRKGLD---KHVAVSNALMDSYVRCGNISMARKLFGSLI-------Y--KDAFSWSVMINGYG 732 (899)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~ 732 (899)
+|+.|+...+..+|+..++.|-+ .-..+|.-|.++|.-.+++++|.++-..-+ . -...+-..|.+.+.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 68899999999999999998755 223456667788888889999988654211 1 01223334555556
Q ss_pred hCCCHHHHHHHHHH----HHHcCCCC-ChhHHHHHHHHHHccCC--------------------HHHHHHHHHHHH----
Q 045600 733 LYGDGEAALELFKQ----MQLSGVRP-NEITYLGVLSACSHAGL--------------------VEQSKMVFKSMV---- 783 (899)
Q Consensus 733 ~~g~~~~A~~~~~~----m~~~g~~p-~~~t~~~l~~~~~~~g~--------------------~~~A~~~~~~m~---- 783 (899)
..|.+++|+....+ ..+.|-+. ....+..|...|-..|+ ++.|.++|.+=.
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777654332 22222221 23455556666654432 233444444322
Q ss_pred HcCCccCc-chHHHHHHHHhhcCChHHHHHHHHh-------CCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-
Q 045600 784 EHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKK-------LPCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMD- 853 (899)
Q Consensus 784 ~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 853 (899)
+.|-.... ..|..|.+.|.-.|++++|+..-+. .+.+ .....+..+.+++.-.|+++.|.+.|++.+.+-
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 22322222 5677788888889999999876542 2222 233457788888888999999999998876653
Q ss_pred -----CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 854 -----PENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 854 -----p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
...+...+.|+++|.-...+++|++++++=
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 335778899999999999999999998753
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.33 E-value=0.014 Score=45.69 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=45.3
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 799 DLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
.+|.+.+++++|.+.++++ ...|+ +..|...+..+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4567777777777777776 44443 44566677777778888888888888888888766655433
No 221
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.32 E-value=0.12 Score=44.65 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=50.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhH
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGLEPDN--VTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK--HVAVSNALMDSYV 701 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~ 701 (899)
+..++-..|+.++|+.+|++....|+.... ..+..+-.++...|++++|..+++........+ +......+.-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566778888888888888888765542 233344445556666666666666655542211 1111122223444
Q ss_pred hcCCHHHHHHHHHhcC
Q 045600 702 RCGNISMARKLFGSLI 717 (899)
Q Consensus 702 ~~g~~~~A~~~~~~~~ 717 (899)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554443
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.30 E-value=0.037 Score=52.00 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=72.5
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHH-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC-------------
Q 045600 404 KFLFDQI--PNRNLLCWNAMMSAYVR-----NRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKL------------- 463 (899)
Q Consensus 404 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 463 (899)
...|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34666777777777764 466777778888888889999999999998887653
Q ss_pred ---CChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCC
Q 045600 464 ---DDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQ 500 (899)
Q Consensus 464 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 500 (899)
.+.+-|.+++++|...|+.||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346778888888888888888888888888866554
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.054 Score=55.78 Aligned_cols=128 Identities=12% Similarity=-0.051 Sum_probs=91.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-----CCCCC---------hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcc
Q 045600 727 MINGYGLYGDGEAALELFKQMQLS-----GVRPN---------EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKME 792 (899)
Q Consensus 727 li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~---------~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 792 (899)
-.+.|.+.|++..|...|++.... +..+. ..++..|.-++.+.+++.+|++..++.++.+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 457888999999999999887652 12221 1346666777889999999999999988554 44557
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhhCC-HHHHHHHHHHHHhcCCC
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGAC-RIHGN-VELGEIISGMLFEMDPE 855 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~-~~~a~~~~~~~~~~~p~ 855 (899)
.+..-..++...|+++.|...|+++ ...|+......=+..| .+... .+...++|..++...+.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 7777889999999999999999988 7778777655444444 33333 34446777777766544
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.24 E-value=0.037 Score=46.78 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=54.8
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcC
Q 045600 798 VDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPEN----PGSYVMLHNIYASAG 871 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g 871 (899)
..++...|+.+.|++.|.+. -.+.++..|+.-..+++-+|+.++|..-+++++++.-+. ..+|...+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34455666666666666554 223344556666666666677777766666666664332 235566666777777
Q ss_pred ChHHHHHHHHHHHhCC
Q 045600 872 RWEDAYRVRSCMKRSR 887 (899)
Q Consensus 872 ~~~eA~~~~~~~~~~~ 887 (899)
+.++|..-|+..-+-|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777776666665544
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.45 Score=45.43 Aligned_cols=88 Identities=18% Similarity=0.069 Sum_probs=44.4
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcC----CCCchh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-------PCKPSV-SILESLLGACRIHGNVELGEIISGMLFEMD----PENPGS 859 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~ 859 (899)
..|....+.|.+..++++|-..+.+- ..-|+. ..+-..+-.+....|+..|++.++..-+.. |++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 33444556666666666665444433 111222 123333334445556666666666644432 455556
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 045600 860 YVMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 860 ~~~l~~~y~~~g~~~eA~~~~ 880 (899)
..+|..+| ..|+.+++.+++
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 66666555 345555555443
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.089 Score=55.68 Aligned_cols=147 Identities=10% Similarity=0.072 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHH-cCCCCCh-hHHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhc
Q 045600 736 DGEAALELFKQMQL-SGVRPNE-ITYLGVLSACSH---------AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRT 804 (899)
Q Consensus 736 ~~~~A~~~~~~m~~-~g~~p~~-~t~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 804 (899)
..+.|+.+|.+... ..+.|+. ..|..+..++.. .....+|.++-++..+.+ +-|+.....+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45678889999882 2377764 456666554332 223456667777766544 33556677777777888
Q ss_pred CChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHhcCChHHHHHHHH
Q 045600 805 GHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNI-YASAGRWEDAYRVRS 881 (899)
Q Consensus 805 g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-y~~~g~~~eA~~~~~ 881 (899)
|+.+.|..+|++. ...|+.. .|......+.-+|+.++|.+..+++++++|....+-..--++ .+-....++|+++|-
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 8899999999888 6667654 566666777788999999999999999999877666555555 444455788888876
Q ss_pred HH
Q 045600 882 CM 883 (899)
Q Consensus 882 ~~ 883 (899)
+-
T Consensus 432 ~~ 433 (458)
T PRK11906 432 KE 433 (458)
T ss_pred hc
Confidence 53
No 227
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.042 Score=50.27 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=35.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 831 GACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 831 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
.+..+.+..+.|+.-..++++++|....++...+.+|.+..++++|++-|+++.+..+
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 4445555666666666666666666666666666666666666666666666665444
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.17 Score=50.30 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=75.9
Q ss_pred CC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC---ChHHHHHHHHhC-CCCCC-HHHH
Q 045600 753 RP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG---HLNEAFIFVKKL-PCKPS-VSIL 826 (899)
Q Consensus 753 ~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~ 826 (899)
.| |...|..|..+|...|+.+.|...|.+..+.. .+++..+..+..++..+. ...++..+++++ ...|+ ....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 56 66788888888888888888888888887322 233466667777765432 355678888887 55554 4455
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 827 ESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 827 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
.-|...+...|++.+|...++++++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66667788899999999999999998877544
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=95.88 E-value=0.29 Score=51.99 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=99.3
Q ss_pred CHHHHHHHHHhcC---CCC---HHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHc
Q 045600 705 NISMARKLFGSLI---YKD---AFSWSVMINGYGLY---------GDGEAALELFKQMQLSGVRP-NEITYLGVLSACSH 768 (899)
Q Consensus 705 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~ 768 (899)
..+.|..+|.+.. .-| ...|..+..++... .+..+|.++.++..+ +.| |......+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 4677888998887 334 44555555444322 245567777777777 566 66777777778888
Q ss_pred cCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhhCCHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS---ILESLLGACRIHGNVELGE 843 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~a~ 843 (899)
.++++.|...|++.. .+.|+. ..|........-.|+.++|.+.+++. ...|... .....+..|. ..-.+.|+
T Consensus 351 ~~~~~~a~~~f~rA~--~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAK--IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHh--hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 888999999999988 456766 77777888888899999999999984 6666543 2333333444 44567778
Q ss_pred HHHHHHHhc
Q 045600 844 IISGMLFEM 852 (899)
Q Consensus 844 ~~~~~~~~~ 852 (899)
.+|-+-.+.
T Consensus 428 ~~~~~~~~~ 436 (458)
T PRK11906 428 KLYYKETES 436 (458)
T ss_pred HHHhhcccc
Confidence 777654443
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.062 Score=49.03 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCccCcchH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV-----EHGISQKMEHY 794 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 794 (899)
....++..+...|++++|+.+++++.. ..| |...|..++.+|...|+..+|.++|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344566667777888888888888777 566 56678888888888888888888877664 45777776543
No 231
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.85 E-value=1.2 Score=44.34 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=96.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HH---HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 045600 522 LISRCVQNGAVEEAVILLQRMQKEGVELDM-VT---LISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYC 597 (899)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 597 (899)
....+...|++++|.+.|+++... -|+. .. ...+..++.+.+++++|...++..++........-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344556677888888888887763 3332 22 23455667777888888888877777544322223333333322
Q ss_pred hcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHH
Q 045600 598 NCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSL 677 (899)
Q Consensus 598 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 677 (899)
.... .. ..+......+.. ........+|+..|+++.+. -|+. .-.++|...
T Consensus 116 ~~~~---~~---~~~~~~~~~~~~--------~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~r 166 (243)
T PRK10866 116 NMAL---DD---SALQGFFGVDRS--------DRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKR 166 (243)
T ss_pred hhhc---ch---hhhhhccCCCcc--------ccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHH
Confidence 1000 00 000000000000 00000123445555555553 2332 222333333
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 678 MAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YK----DAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 678 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
+..+...= ...--.+...|.+.|.+..|..-++.+. -| .......++.+|...|..++|.+....+.
T Consensus 167 l~~l~~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 33332220 0011245566788888888888777776 22 23456677788888888888887776554
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.81 E-value=0.19 Score=48.77 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCccCc-chHHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRPN----EITYLGVLSACSHAGLVEQSKMVFKSMVEH-GISQKM-EHYAC 796 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~~~~ 796 (899)
.+-.....+...|++++|++.|+++... -|+ ......++.++.+.|++++|...+++.++. .-.|.. ..+-.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3444555666778888888888888764 332 134555566777777777777777777632 222221 12222
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-----------------h
Q 045600 797 MVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG-----------------S 859 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~ 859 (899)
++.++... +.... ......+....|...++.+++..|+++- .
T Consensus 85 ~g~~~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 22222111 11100 0011222345566666666666666543 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCcccc
Q 045600 860 YVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLV 897 (899)
Q Consensus 860 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 897 (899)
-..++..|.+.|++..|..-++.+.+ +.|+..+.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~----~yp~t~~~ 177 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIE----NYPDTPAA 177 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHH----HSTTSHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH----HCCCCchH
Confidence 35578889999999999999999986 45555443
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.76 E-value=0.84 Score=47.84 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChh-HHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCccCcchHHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGV--RPNEI-TYLGVLSACSH---AGLVEQSKMVFKSMVEHGISQKMEHYAC 796 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~-t~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 796 (899)
+...++-+|....+++.-+++.+.+....- .++.. .--...-++.+ .|+.++|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 344566679999999999999999987311 11211 22233446667 8999999999999776666788899999
Q ss_pred HHHHHhh---------cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCC-HH---HHHHHH----HHHHhc----CC
Q 045600 797 MVDLLGR---------TGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGN-VE---LGEIIS----GMLFEM----DP 854 (899)
Q Consensus 797 l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~~~~~----~p 854 (899)
++..|-. ....++|...+.+. ...|+...=-+++..+...|. .+ +..++. ..+.+. .-
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8887732 22477888888877 566665432222222333332 11 122222 111122 23
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 855 ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 855 ~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
++-+.+-++..+..-.|++++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 46667788999999999999999999999853
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.55 Score=46.55 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhhCCHHHH
Q 045600 766 CSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILES---LLGACRIHGNVELG 842 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~a 842 (899)
....|+..+|..+|+......-. +...--.++.+|...|+.++|..++..++......-+.. -+..+.+..+..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44556666666666666532211 234455567777777777777777777643333222222 22233333333222
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
. .+++-...+|+|...-..|+..|...|+.++|++.+=.+.++
T Consensus 223 ~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 Q-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred H-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 234445667777777777777777777777777666555543
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.56 E-value=3.7 Score=43.93 Aligned_cols=150 Identities=11% Similarity=-0.033 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc--ch
Q 045600 719 KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP---NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM--EH 793 (899)
Q Consensus 719 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~ 793 (899)
....+|..++..+.+.|+++.|...+.++...+..+ .......-+..+...|+..+|...++......+..+. ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888899999999999999988888744222 2334444566777888889999888887753222221 11
Q ss_pred HHHHHHHHhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhh------CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045600 794 YACMVDLLGRTGHLNEAFIF-VKKLPCKPSVSILESLLGACRIH------GNVELGEIISGMLFEMDPENPGSYVMLHNI 866 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 866 (899)
...+...+.. ..+..... ........-...+..+...+... ++.+.+...++.+.+..|....++..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000011233333333333 788889999999999999988899888888
Q ss_pred HHhc
Q 045600 867 YASA 870 (899)
Q Consensus 867 y~~~ 870 (899)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7654
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.47 E-value=1.4 Score=44.73 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=53.4
Q ss_pred HHhcccCCHHHHHHHHHHHHHh-----CCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-------CCCHH------HH
Q 045600 663 SAGVLINSLNLTHSLMAFVIRK-----GLDKHVAVSNALMDSYVRCGNISMARKLFGSLI-------YKDAF------SW 724 (899)
Q Consensus 663 ~a~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~------~~ 724 (899)
.++.-.+.++.+++.|+...+- .......+|..|...|.+..++++|.-+..+.. -.|.. +.
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 3344444455555555544332 111234456666777777777766654443331 12211 12
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-Chh----HHHHHHHHHHccCCHHHHHHHHHH
Q 045600 725 SVMINGYGLYGDGEAALELFKQMQLSGVRP-NEI----TYLGVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 725 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~----t~~~l~~~~~~~g~~~~A~~~~~~ 781 (899)
..|.-++...|+.-+|.+.-++..+..+.. |.. ....+.+.|-..|+.+.|+.-|++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223344555555555555555443321111 222 223333344455555555544444
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.40 E-value=3.1 Score=41.06 Aligned_cols=217 Identities=17% Similarity=0.107 Sum_probs=142.1
Q ss_pred HhHHHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CCH-HHHHHHHH-
Q 045600 655 NVTVLSIISAGVLINSLNLTHSLMAFVIRK-GLDKHVAVSNALMDSYVRCGNISMARKLFGSLIY--KDA-FSWSVMIN- 729 (899)
Q Consensus 655 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~- 729 (899)
...+......+...+....+...+...... ........+......+...+.+.++.+.+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555666666666666555543 2233444555666666777778888888877763 222 22333333
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC
Q 045600 730 GYGLYGDGEAALELFKQMQLSGVRP----NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG 805 (899)
Q Consensus 730 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 805 (899)
.+...|+++.|...+++... ..| ....+......+...++.+.+...+..............+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 68888999999999999855 444 233444444457788899999999999884332213567788888899999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 045600 806 HLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRV 879 (899)
Q Consensus 806 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~ 879 (899)
++++|...+... ...|+ ...+..+...+...+..+.+...+++..+..|. +..++..+... ..++...
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~ 286 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD----LYNLGLALLLL--LAEALEL 286 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH--HHHHHHH
Confidence 999999988877 44454 445555555556677899999999999999987 44444444443 4444433
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=1.1 Score=44.40 Aligned_cols=175 Identities=17% Similarity=0.124 Sum_probs=115.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045600 707 SMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 707 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~ 785 (899)
+...+++++...+....--.-.......|+..+|..+|+...+ ..| +...-..+..+|...|+.+.|..++..+-..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3445555555544222222233455677899999999988887 455 4456777788899999999999999876421
Q ss_pred CCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCchhHHH
Q 045600 786 GISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMD--PENPGSYVM 862 (899)
Q Consensus 786 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~ 862 (899)
--.........-+..+.+.....+...+..+....| |...-..+...+...|+.+.|...+=.++..+ -+|..+-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 111111223334566666666666666666665556 56667778888889999999887777776665 567888888
Q ss_pred HHHHHHhcCChHHH-HHHHHHH
Q 045600 863 LHNIYASAGRWEDA-YRVRSCM 883 (899)
Q Consensus 863 l~~~y~~~g~~~eA-~~~~~~~ 883 (899)
|..++...|..+.+ ..+.++|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 99999988854444 4444444
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=6.4 Score=44.30 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSH 768 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 768 (899)
..-+.+--+.-+...|+..+|.++-.+..-||...|---+.+++..+++++-+++-+.+.. +.-|.....+|.+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK 756 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh
Confidence 3344455666677889999999999999989988888888999999999887776665432 4567778889999
Q ss_pred cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHh
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
+|+.++|.+++.+.- -+.-.+.+|.+.|++.+|.+.--+
T Consensus 757 ~~n~~EA~KYiprv~---------~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG---------GLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccC---------ChHHHHHHHHHhccHHHHHHHHHH
Confidence 999999988876532 122578888899998888766443
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.03 E-value=0.12 Score=43.78 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=51.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+....|+.+.|++.|.+++.+-|.++++|++.+.+|.-+|+.++|+.-+++..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999999999999999999988865
No 241
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.02 E-value=0.034 Score=44.09 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=14.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
+|+.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555556666666666666666554
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.99 E-value=0.33 Score=48.92 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHhcccCCHHHHHHH
Q 045600 630 YVQTNKAKQAVAFFTELLGA--GLEPDNVTVLSIISAGVLINSLNLTHSL 677 (899)
Q Consensus 630 ~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 677 (899)
+....+.++|+..+.+-..+ ...---.+|..+..+.++.|.+++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 34556667777766665543 1112223455555555555555555443
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=0.21 Score=49.02 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPEN---PGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
-|+..+...|+++.|...|..+.+..|++ |.++.-|+.+..+.|+.++|...|+++.+.
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443 334555555666666666666666665543
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.89 E-value=0.29 Score=48.00 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=55.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCc--cCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhhCCHH
Q 045600 768 HAGLVEQSKMVFKSMVEHGIS--QKMEHYACMVDLLGRTGHLNEAFIFVKKL----PCKP-SVSILESLLGACRIHGNVE 840 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 840 (899)
+.|++..|...|...++.... -....+..|...+...|++++|...|..+ +..| -+..+.-+.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 334455555555554432211 11234445777777777777777766655 2222 2345666666777777888
Q ss_pred HHHHHHHHHHhcCCCCchhHH
Q 045600 841 LGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 841 ~a~~~~~~~~~~~p~~~~~~~ 861 (899)
.|-..++++.+..|..+.+-.
T Consensus 233 ~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888887665543
No 245
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.62 E-value=2.3 Score=40.05 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHH
Q 045600 721 AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVD 799 (899)
Q Consensus 721 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 799 (899)
+..||-+.--+...|+++.|.+.|+...+ +.|. ..+...-.-++.--|++.-|.+-+...-+.. +.|+ |.. ++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~-LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRS-LW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHH-HH
Confidence 34566666666677777777777777766 4442 1222222223445567766665555444222 1111 221 12
Q ss_pred HHh--hcCChHHHHH-HHHhCCCCCCHHHHHHHH-HHHHhhCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHH
Q 045600 800 LLG--RTGHLNEAFI-FVKKLPCKPSVSILESLL-GACRIHGNVELGEIISGMLFEMDPEN-------PGSYVMLHNIYA 868 (899)
Q Consensus 800 ~~~--~~g~~~~A~~-~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~ 868 (899)
.|. ..-+..+|.. +.++. ...|...|...+ ..+..+=.. +.+++++.+-..++ ..+|+.|+..|.
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 222 2234445543 33333 223333443332 222211111 22333333333333 347888999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 045600 869 SAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 869 ~~g~~~eA~~~~~~~~~~~ 887 (899)
..|+.++|..+|+......
T Consensus 249 ~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 249 SLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 9999999999998776543
No 246
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.59 E-value=11 Score=43.47 Aligned_cols=113 Identities=14% Similarity=0.015 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHH
Q 045600 735 GDGEAALELFKQMQLSG-VRPNE--ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAF 811 (899)
Q Consensus 735 g~~~~A~~~~~~m~~~g-~~p~~--~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 811 (899)
.+.+.|..++.+..... +.+.. .....+.......+...+|...++..... ..+......-+..-.+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHH
Confidence 34566666666553322 22221 12223322222222234444444443211 112333333444444666666666
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 045600 812 IFVKKLP--CKPSVSILESLLGACRIHGNVELGEIISGML 849 (899)
Q Consensus 812 ~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 849 (899)
..+..|+ ..-...-..-+++++...|+.+.|...++++
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666652 1111222233344444456666666666665
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.55 E-value=1.3 Score=47.20 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=27.6
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLI--YKDA----FSWSVMINGYGLYGDGEAALELFKQMQL 749 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 749 (899)
...++.+...|.+.|++++|+..|++.+ .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444445555555555554433 2321 2344444455555555555555554444
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.42 E-value=9.8 Score=41.93 Aligned_cols=180 Identities=15% Similarity=0.106 Sum_probs=124.9
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLIYK---DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSA 765 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 765 (899)
+..+|+..++.-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++....+- ..|+......+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHH
Confidence 5667888888888999999999999998754 2335666665556668988888887776653 23443333333333
Q ss_pred -HHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHH---HHHHhC-CCCCCHHHHH----HHHH-HHH
Q 045600 766 -CSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAF---IFVKKL-PCKPSVSILE----SLLG-ACR 834 (899)
Q Consensus 766 -~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~----~l~~-~~~ 834 (899)
.-..|+.+.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. +++... ...-+..+.. .+.+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 446789999999999998533 554 33334566777889998888 555444 2333333222 2222 245
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 835 IHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 835 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
..++.+.|..++.++.+..|++...|..+.+....++
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999988888877766
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.36 Score=48.18 Aligned_cols=160 Identities=10% Similarity=-0.033 Sum_probs=110.5
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcc----hHHHHHHHHhhcCCh
Q 045600 732 GLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKME----HYACMVDLLGRTGHL 807 (899)
Q Consensus 732 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~ 807 (899)
.-.|+..+|-..|+++.+. .+.|...+..-=.+|...|+.+.-+..++++... ..++.. ....+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568888888888888873 3347777777778899999999999888888732 234442 233455667788999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHHH
Q 045600 808 NEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPE----NPGSYVMLHNIYASAGRWEDAYRVRS 881 (899)
Q Consensus 808 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~eA~~~~~ 881 (899)
++|.+.-++. .++| |.-...+....+..+|+++++.++.++--..=.+ -...|-+.+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988887 4443 4445667778888889999998887654332211 12233444455556789999999998
Q ss_pred HHHhCCCccCCC
Q 045600 882 CMKRSRLKKVPG 893 (899)
Q Consensus 882 ~~~~~~~~~~~~ 893 (899)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766666666555
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.25 E-value=11 Score=41.67 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHH-HHH
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLL-GAC 833 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~-~~~ 833 (899)
.+|...+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++... -..|+......+- ..+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 34555555555556666666555554410 0001133334444444446555555554443 1112222222111 222
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH
Q 045600 834 RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAY 877 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~ 877 (899)
-..|+.+.|..+++.+.+..|..-..-..-+....++|+.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 33456666666666666655555555555555555666666655
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.19 E-value=8.7 Score=40.49 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHH-HH
Q 045600 720 DAFSWSVMINGYGLYGDGEAALELFKQMQLSG-VRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYA-CM 797 (899)
Q Consensus 720 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l 797 (899)
-...|..+++.-.+..-++.|..+|-+..+.| +.|+...+++++..++ .|+...|..+|+.=.. .-||...|. -.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34566667776666667777777777777777 5567777777776554 4566677777765432 134443333 34
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 798 VDLLGRTGHLNEAFIFVKKL--PCKPS--VSILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
+.-+.+-++-+.|..+|++. ....+ ..+|..++..-..-|+...+..+-++..+..|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 45556677777777777754 12222 4466777766677777777777777777777764
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.13 E-value=0.083 Score=33.61 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
.++..+|.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777777777777777777776643
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.05 E-value=0.1 Score=33.80 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999954
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.92 E-value=4.4 Score=36.41 Aligned_cols=124 Identities=10% Similarity=-0.010 Sum_probs=69.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC
Q 045600 726 VMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG 805 (899)
Q Consensus 726 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 805 (899)
.++..+...+..+....+++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+.......+..+.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45555555666777777777766654 235556666666666543 3333344432 123344445666666777
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 806 HLNEAFIFVKKLPCKPSVSILESLLGACRIH-GNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 806 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
.++++..++.+++.. ...+..+..+ ++.+.|++++++ +.++..|..++..+.
T Consensus 84 l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777777777776421 2222223333 677777777664 235556666655544
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.90 E-value=0.094 Score=33.41 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+|..+|.+|..+|++++|++.+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467778888888888888888888877543
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.89 E-value=0.12 Score=35.46 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 857 PGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 857 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
|.++..++.+|...|++++|+++++++.+..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999876554
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.89 E-value=1.1 Score=47.74 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=25.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPE--NPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
+...+.+.|+.++|++.++.+++..|. +-.+..+|+.+|...+++.|+..++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334444445555555555554444432 333444455555555555555444444
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=93.80 E-value=1.5 Score=39.69 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=45.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHH
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNE 809 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 809 (899)
+...|++++|..+|+-+.. ..| |..-+..|..++-..+.+++|...|........ -|+..+.....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3455666666666666655 344 222333444444555666666666665553221 233334446666667777777
Q ss_pred HHHHHHhC
Q 045600 810 AFIFVKKL 817 (899)
Q Consensus 810 A~~~~~~~ 817 (899)
|..-|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 76666655
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.73 E-value=3.2 Score=46.10 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=82.0
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCCh-----hHHHHHHHHhHh----cCCHHHHHHHHHhcC--CCCHHHHH
Q 045600 658 VLSIISAGVLINSLNLTHSLMAFVIRK-GLDKHV-----AVSNALMDSYVR----CGNISMARKLFGSLI--YKDAFSWS 725 (899)
Q Consensus 658 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~ 725 (899)
+..++....=.|+-+.+++.+....+. ++.... -.|...+..++. ....+.|.++++.+. -|+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 444555555667777777777665554 333221 122333332222 345677777777776 36655554
Q ss_pred HH-HHHHHhCCCHHHHHHHHHHHHHcC--CCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHH-HHHH
Q 045600 726 VM-INGYGLYGDGEAALELFKQMQLSG--VRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYAC-MVDL 800 (899)
Q Consensus 726 ~l-i~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~ 800 (899)
-. .+.+...|++++|++.|++..... .+. ....+--+.-.+.-.++|++|.+.+..+.+.. .-+...|.. .+-+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33 344556677777777777654311 111 22234444445666677777777777776322 111222222 2333
Q ss_pred HhhcCCh-------HHHHHHHHhC
Q 045600 801 LGRTGHL-------NEAFIFVKKL 817 (899)
Q Consensus 801 ~~~~g~~-------~~A~~~~~~~ 817 (899)
+...|+. ++|.+++.+.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 4455555 5555555553
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.72 E-value=3.3 Score=46.00 Aligned_cols=160 Identities=15% Similarity=0.084 Sum_probs=102.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCh-----hHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCccCcch
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSG-VRPNE-----ITYLGVLSACSH----AGLVEQSKMVFKSMVEHGISQKMEH 793 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~ 793 (899)
...++....-.||-+.+++.+.+..+.+ +.-.. ..|...+..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555566677777777777765532 11111 224444443332 45677888888888743 355533
Q ss_pred HH-HHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH-HHHHH
Q 045600 794 YA-CMVDLLGRTGHLNEAFIFVKKLP-CKPS-----VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSY-VMLHN 865 (899)
Q Consensus 794 ~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l~~ 865 (899)
|. .-.+.+...|+.++|++.++++- .... ...+-.+++.+...+++++|...+.++.+.+.-+...| +..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 33 34566677888999998888752 1111 12344556777788899999999999988777655555 55666
Q ss_pred HHHhcCCh-------HHHHHHHHHHHh
Q 045600 866 IYASAGRW-------EDAYRVRSCMKR 885 (899)
Q Consensus 866 ~y~~~g~~-------~eA~~~~~~~~~ 885 (899)
+|...|+. ++|.+++.++-.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77788888 888888887643
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.62 E-value=3.7 Score=36.33 Aligned_cols=118 Identities=11% Similarity=-0.005 Sum_probs=69.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC-CCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhc
Q 045600 727 MINGYGLYGDGEAALELFKQMQLSG-VRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRT 804 (899)
Q Consensus 727 li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 804 (899)
-.....+.|++++|++.|+.+...- ..| ....-..|+.+|.+.|++++|...+++.++....-...-|.....++..-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444556688888888888887742 111 23456667778888888888888888888544322234455555554443
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 045600 805 GHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGS 859 (899)
Q Consensus 805 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 859 (899)
...+..+.-+- ..+-| .+....|...+++++...|+++-+
T Consensus 96 ~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChhH
Confidence 33332222111 11111 123457788888888888887644
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.62 E-value=1.4 Score=48.20 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=74.0
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHH
Q 045600 697 MDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSK 776 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~ 776 (899)
.+...+.|+++.|.++.++.. +...|..|.+...+.|+++-|++.|++..+ +..|+-.|...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 455667888888888877755 666899999999999999999988888664 566666777888887777
Q ss_pred HHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 045600 777 MVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPC 819 (899)
Q Consensus 777 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 819 (899)
++.+.....| -++....++.-.|+.++..+++.+.+.
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 7777666544 234445555666777777777776643
No 263
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.54 E-value=0.86 Score=39.81 Aligned_cols=48 Identities=8% Similarity=0.145 Sum_probs=25.6
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCccCcchHHHHHH
Q 045600 752 VRPNEITYLGVLSACSHAGLVEQSKMVFKSMV-EHGISQKMEHYACMVD 799 (899)
Q Consensus 752 ~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~ 799 (899)
+.|+..+..+++.+|+..|++..|+++++... .++++.+...|..|.+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555555555555555555555555555555 4444444444544443
No 264
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.52 E-value=0.56 Score=45.73 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=75.4
Q ss_pred HHHHHhcC--CCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCC-----------
Q 045600 710 RKLFGSLI--YKDAFSWSVMINGYGL-----YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGL----------- 771 (899)
Q Consensus 710 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~----------- 771 (899)
++.|.... +.|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.|+..+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 5577777777776654 35677777788999999999999999999987754432
Q ss_pred -----HHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC
Q 045600 772 -----VEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH 806 (899)
Q Consensus 772 -----~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 806 (899)
-+=+..++++|...|+-||.++-..+++++.+.|-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 23478999999999999999999999999988774
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.51 E-value=0.19 Score=31.85 Aligned_cols=33 Identities=27% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 824 SILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
..|..++..+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457788889999999999999999999999975
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=2.5 Score=38.24 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcc-hHHH-
Q 045600 720 DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKME-HYAC- 796 (899)
Q Consensus 720 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~- 796 (899)
....|..-++ +++.+..++|+.-|.++.+-|...-+. .-..........|+...|...|+++-.-...|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444544443 456678889999999888766443221 22223335668888888998888887433333321 1111
Q ss_pred -HHHHHhhcCChHHHHHHHHhCCC--CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 045600 797 -MVDLLGRTGHLNEAFIFVKKLPC--KP-SVSILESLLGACRIHGNVELGEIISGMLFE 851 (899)
Q Consensus 797 -l~~~~~~~g~~~~A~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 851 (899)
-...+...|-+++....++-+.. .| ....-+.|.-+..+.|++..|...|+++.+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23445678888888888877722 22 233456677777888888888888888776
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=1.7 Score=43.54 Aligned_cols=159 Identities=9% Similarity=-0.045 Sum_probs=109.3
Q ss_pred hHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH----HHHHHccCCH
Q 045600 700 YVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGV----LSACSHAGLV 772 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----~~~~~~~g~~ 772 (899)
.-..|+..+|-..++++. +.|...++---++|...|+.+.-...++++.-. ..||.+.|..+ .-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345788888888888887 447788888889999999999988888888753 45666544433 3355688999
Q ss_pred HHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC--HH----HHHHHHHHHHhhCCHHHHHHHH
Q 045600 773 EQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPS--VS----ILESLLGACRIHGNVELGEIIS 846 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~----~~~~l~~~~~~~g~~~~a~~~~ 846 (899)
++|.+.-++..+.+ +.|.-.-..+...+.-.|+..++.++..+-...-+ .. .|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998877433 22334445677888889999999999988732211 11 1222223344568899999998
Q ss_pred HHHH--hcCCCCchhH
Q 045600 847 GMLF--EMDPENPGSY 860 (899)
Q Consensus 847 ~~~~--~~~p~~~~~~ 860 (899)
++-+ ++..+|..+.
T Consensus 271 D~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVAR 286 (491)
T ss_pred HHHHHHHhhccchhhh
Confidence 7543 4455666443
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=20 Score=41.23 Aligned_cols=117 Identities=18% Similarity=0.057 Sum_probs=72.7
Q ss_pred hHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHH----HHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhcc
Q 045600 186 TALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAG----YSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRL 261 (899)
Q Consensus 186 ~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 261 (899)
..-+++..+...++-|..+-..-.. |..+-..+... +-+.|++++|...|-+-... +.| +.+|.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 4455666666666777666543321 22222333333 34678899998888775532 222 4456666666
Q ss_pred CChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcC
Q 045600 262 GHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLL 310 (899)
Q Consensus 262 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 310 (899)
.....--.+++.+.+.|+... .-.+.|+.+|.+.++.++-.+..+...
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 666666677777778875433 334677888888888888777776655
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.98 E-value=0.19 Score=31.95 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 824 SILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
..|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888899999999999999999999999974
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.93 E-value=9.9 Score=40.97 Aligned_cols=142 Identities=10% Similarity=0.080 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN 705 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 705 (899)
+|.---+..+...-++.-++..+ +.||..+.-. +-+--....+.++++++++..+.|-. .+.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYI-LLAEEeA~Ti~Eae~l~rqAvkAgE~-----------~lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYI-LLAEEEASTIVEAEELLRQAVKAGEA-----------SLGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHh-hcccccccCHHHHHHHHHHHHHHHHH-----------hhchhhh
Confidence 34444455555555566666555 3465544322 22333455667777777776655321 0000000
Q ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHccCCHHHHHHHH
Q 045600 706 ISMARKLFGSLIYK----DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP--NEITYLGVLSACSHAGLVEQSKMVF 779 (899)
Q Consensus 706 ~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~~~~~~g~~~~A~~~~ 779 (899)
.+..-..++....+ -..+-..+..++.+.|+.++|++.+++|.+.. .+ +......|+.++...+.+.++..++
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00000011111111 12222345566667777777777777776521 11 1224555566666666666666666
Q ss_pred HHH
Q 045600 780 KSM 782 (899)
Q Consensus 780 ~~m 782 (899)
.+-
T Consensus 319 ~kY 321 (539)
T PF04184_consen 319 AKY 321 (539)
T ss_pred HHh
Confidence 554
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.90 E-value=3.6 Score=36.98 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=12.9
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045600 805 GHLNEAFIFVKKLPCKPSVSILESLLGAC 833 (899)
Q Consensus 805 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 833 (899)
++.+.|.+++++. .++..|..++..+
T Consensus 110 ~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 110 GNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 4555555555542 2444555555444
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.76 E-value=7.5 Score=35.35 Aligned_cols=118 Identities=13% Similarity=0.030 Sum_probs=50.1
Q ss_pred HccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-----HHHHhhCCH
Q 045600 767 SHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLL-----GACRIHGNV 839 (899)
Q Consensus 767 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-----~~~~~~g~~ 839 (899)
.+.+..++|+.-|..+.+.|...-+ .............|+...|...|.+. ...|.+.....+. ..+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3444555555555555544432211 11222333444555555555555555 2222222221111 122344444
Q ss_pred HHHHHHHHHHH-hcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 840 ELGEIISGMLF-EMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 840 ~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
+....-.+.+- +.+|-...+-..|+-+-++.|++.+|.++|+.+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44333322221 2223333344455555555555555555555544
No 273
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.64 E-value=1.3 Score=38.78 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=14.6
Q ss_pred CCChhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 045600 687 DKHVAVSNALMDSYVRCGNISMARKLFGSL 716 (899)
Q Consensus 687 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 716 (899)
.|+..+..+++.+|+..|++..|.++++..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444455555555555555555444443
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.23 E-value=0.96 Score=40.77 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=34.3
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 045600 803 RTGHLNEAFIFVKKL-PCKPSVSILESL-LGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGR 872 (899)
Q Consensus 803 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 872 (899)
+.++.+++..++..+ ...|.......+ .+.+..+|++.+|+.+++.+.+..|..+..--.++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 445555555555555 333443333222 2333455555555555555555555555555555555555544
No 275
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.99 E-value=28 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 045600 417 CWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKL 463 (899)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 463 (899)
.--++|--+.|.|++++|.++..+... .+......|...+..+...
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 344566677777777777777744443 2345555666777777654
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.98 E-value=5.9 Score=35.87 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 045600 768 HAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACR 834 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 834 (899)
..++.+++..+++.+. -+.|.. ..-..-+..+.+.|+|++|..+++++ ...|....-..|+..|.
T Consensus 22 ~~~~~~D~e~lL~ALr--vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR--VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred ccCChHHHHHHHHHHH--HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 4445555555555554 223333 22222334445556666666666655 33333344444444443
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=28 Score=40.10 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 045600 695 ALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALEL 743 (899)
Q Consensus 695 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 743 (899)
-++..+.+..+.+++..+.+..-+.++..|-.+++.+.+.+.++.-.+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~ 758 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEI 758 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHH
Confidence 4556677777888888888877777788888888888887755444333
No 278
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.93 E-value=0.21 Score=31.36 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+++.++.+|.+.|++++|.+.|+++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567788888888888888888888876433
No 279
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.85 E-value=52 Score=42.94 Aligned_cols=312 Identities=9% Similarity=-0.011 Sum_probs=164.7
Q ss_pred HHHHHhcCCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHH
Q 045600 557 FLPNLNKNGNIKQGMVIHGYA----IKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQ 632 (899)
Q Consensus 557 ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 632 (899)
+..+-.+.+.+..|...++.- .+.. .....|..+...|+.-++.|...-+... ....+ ....-|.-...
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~--r~a~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSAR--RFADP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHH--hhcCc---cHHHHHHHHHh
Confidence 334555666677777777662 1111 1123344455578888887776522221 11111 12234445677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHH
Q 045600 633 TNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKL 712 (899)
Q Consensus 633 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 712 (899)
.|++..|...|+.+...+ ++...++..++......|.++......+-......+-....++.=+.+--+.+++|..++.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 889999999999998875 3346778777777777777777666544444332222222233334444677777777766
Q ss_pred HHhcCCCCHHHHHHH--HHHHHhCC--CHHHHHHHHHHHHHcCCCCC---------hhHHHHHHHHHHccCCHHHHHHHH
Q 045600 713 FGSLIYKDAFSWSVM--INGYGLYG--DGEAALELFKQMQLSGVRPN---------EITYLGVLSACSHAGLVEQSKMVF 779 (899)
Q Consensus 713 ~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~g~~p~---------~~t~~~l~~~~~~~g~~~~A~~~~ 779 (899)
.. ..+..+|... +....+.. |.-.-.+..+.+++.-+.|= ...|..++..+.-. +-....
T Consensus 1541 l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSI 1613 (2382)
T ss_pred hh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHH
Confidence 65 3344444443 22222221 21112233333333212220 01233333322111 111111
Q ss_pred HHHHHcCCccCcc-hHH--HHHHHHhhcCChHHHHHHH---Hh-C---CCCC-----CHHHHHHHHHHHHhhCCHHHHHH
Q 045600 780 KSMVEHGISQKME-HYA--CMVDLLGRTGHLNEAFIFV---KK-L---PCKP-----SVSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 780 ~~m~~~~~~p~~~-~~~--~l~~~~~~~g~~~~A~~~~---~~-~---~~~p-----~~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
+.. .+..++.. ... ....-+.+.+....+.+-+ ++ + ...| -..+|....+.+++.|.++.|-.
T Consensus 1614 ~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1614 EEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111 12233221 111 1112222222222232221 11 1 1122 23578999999999999999998
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 845 ISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 845 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
..=.+.+.. -+.++...+..+.++|+-..|+.++++..+..
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888887777 36788999999999999999999999987543
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.79 E-value=1.7 Score=42.54 Aligned_cols=107 Identities=10% Similarity=0.131 Sum_probs=78.3
Q ss_pred HHhhcCC--CCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccC-------------
Q 045600 610 LLFQMGD--KREISLWNAIISVYVQT-----NKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLIN------------- 669 (899)
Q Consensus 610 ~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~------------- 669 (899)
+.|.... .+|-.+|-+.+..+... +.++-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 4454444 45666777777766543 446666677888999999999999999998875533
Q ss_pred ---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCH-HHHHHHHHhc
Q 045600 670 ---SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNI-SMARKLFGSL 716 (899)
Q Consensus 670 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 716 (899)
.-+.+..++++|...|+.||..+-..+++.+++.+-. .+..++.--|
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3356889999999999999999999999999988753 3333433333
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.75 E-value=2.6 Score=39.09 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=64.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCccC-----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCC
Q 045600 766 CSHAGLVEQSKMVFKSMVEHGISQK-----MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGN 838 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~ 838 (899)
+.+.|++++|..-|...++.- ++. ...|..-..++.+.+.|+.|+.-..+. ...|... .+..-..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 344455555555554444211 111 133444455666777777777666555 4444322 22222345666677
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH--HHHHHHHhC
Q 045600 839 VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAY--RVRSCMKRS 886 (899)
Q Consensus 839 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~--~~~~~~~~~ 886 (899)
++.|+.-|+++++.+|.+..+-...+.+--......|+. ++..++++.
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdl 233 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDL 233 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888877666555555544444333333 234444433
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.40 E-value=1.1 Score=39.53 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=36.4
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 835 IHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 835 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
..++.++++.+++.+.-+.|+.+..-..-++++...|+|+||+.+++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46666777777777777777777777777777777777777777777665544
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.37 E-value=0.099 Score=47.46 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred HHHHHhccCCChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchH
Q 045600 152 FLIKACSSLSDLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQE 231 (899)
Q Consensus 152 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (899)
.+++.+.+.+........++.+.+.+...+..+.+.++..|++.++.+...+++..... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777788888888888888777667889999999999999888888888884433 444567777777787777
Q ss_pred HHHHHHHHH
Q 045600 232 ALETFRRIL 240 (899)
Q Consensus 232 A~~~~~~m~ 240 (899)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777777653
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.26 E-value=20 Score=36.95 Aligned_cols=64 Identities=17% Similarity=0.332 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCccCcchHHHHHHHH
Q 045600 738 EAALELFKQMQLSGVRPN-EITYLGVLSACSHAGL---VEQSKMVFKSMVEHGISQKMEHYACMVDLL 801 (899)
Q Consensus 738 ~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 801 (899)
+.++.+|+.+.+.|+..+ ..-+.+-+-+++.... ..++.++++.+.+.|+++....|..++-.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 456777777877777763 3333333333332221 446778888888888888777776555443
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.12 E-value=1.8 Score=43.45 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCccCcchHHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV-----EHGISQKMEHYAC 796 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~~ 796 (899)
++..++..+...|+.+.+++.++++.. ..| |...|..++.+|.+.|+...|+..|+++. +.|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455566666666666666666666666 455 55666666666666666666666666554 3566666655554
Q ss_pred HHHH
Q 045600 797 MVDL 800 (899)
Q Consensus 797 l~~~ 800 (899)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.11 E-value=0.49 Score=47.30 Aligned_cols=107 Identities=10% Similarity=0.005 Sum_probs=75.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCcc-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhCCH
Q 045600 763 LSACSHAGLVEQSKMVFKSMVEHGISQ-KMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPS--VSILESLLGACRIHGNV 839 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 839 (899)
..-|.++|.+++|...|...+ ...| ++.++..-..+|.+..++..|..-....-.-.+ ...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 557899999999999998876 3455 667888888899999999888777665511111 12344444555567888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 045600 840 ELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 840 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~e 875 (899)
.+|.+-++.++++.|++. .|-..|.+.....|
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E 213 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRE 213 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHh
Confidence 999999999999999844 34445555444433
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.04 E-value=4.1 Score=37.91 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=35.6
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCc----chHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCCH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKM----EHYACMVDLLGRTGHLNEAFIFVKKLPCKP-SVSILESLLGACRIHGNV 839 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 839 (899)
.+...|++++|...++..... +.|. ..--.|.......|.+|+|+..++....+. .+.....-+..+...||.
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 445555555555555554411 1111 111123344445555555555555431110 111122223344444444
Q ss_pred HHHHHHHHHHHhcC
Q 045600 840 ELGEIISGMLFEMD 853 (899)
Q Consensus 840 ~~a~~~~~~~~~~~ 853 (899)
+.|...|+++++.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 44444444444444
No 288
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.97 E-value=9.2 Score=35.72 Aligned_cols=90 Identities=11% Similarity=-0.032 Sum_probs=62.4
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 797 MVDLLGRTGHLNEAFIFVKKLPCKPSVSILE-----SLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
+...+..+|++++|...++..-..|....+. .|.+.....|.+|.|...++...+..- .+..-...|+++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 4566788889999988888653333333333 334666778888888887766544221 2344667888999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 045600 872 RWEDAYRVRSCMKRSR 887 (899)
Q Consensus 872 ~~~eA~~~~~~~~~~~ 887 (899)
+.++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999998888765
No 289
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.70 E-value=28 Score=37.67 Aligned_cols=177 Identities=10% Similarity=0.044 Sum_probs=110.9
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 045600 688 KHVAVSNALMDSYVRCGNISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSA 765 (899)
Q Consensus 688 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 765 (899)
.+....-++++.++.+..+.-.+.+..+|. ..+...|..++..|... ..++-..+|+++.+ ..-|......-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHH
Confidence 355555667777777777777777777776 55667788888888877 45677788888877 34444444443443
Q ss_pred HHccCCHHHHHHHHHHHHHcCCcc--Cc---chHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhh
Q 045600 766 CSHAGLVEQSKMVFKSMVEHGISQ--KM---EHYACMVDLLGRTGHLNEAFIFVKKL----PCKPSVSILESLLGACRIH 836 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~~~~~~p--~~---~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~ 836 (899)
+...++...+..+|.++...=++. +. ..|.-+...- ..+.|..+.+..+. +..--...+..+..-|...
T Consensus 141 ~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 444478888888888776432221 11 3444333321 33555555555544 3333334455555677778
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
.++++|++++..+++.+..|..+-..+..-+..
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 888888888888888887777666665555443
No 290
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.68 E-value=0.54 Score=29.76 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+|..++.+|.+.|++++|.+.|++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999987643
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.29 E-value=39 Score=38.70 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 045600 486 DVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNK 563 (899)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 563 (899)
.+....|+.+.-.|++++|-...-.|...+..-|.--+..+...++......++ ....-+.+...|..++..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 455667777778888888888888888888888877777777776655433221 111112345566666666655
No 292
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.99 E-value=7.7 Score=42.48 Aligned_cols=130 Identities=10% Similarity=0.051 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHc
Q 045600 554 LISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQT 633 (899)
Q Consensus 554 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 633 (899)
...++.-+.+.|-.+.|+++...- ..-.+...++|+++.|. +..+... +...|..|.....+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~---~~a~~~~--~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIAL---EIAKELD--DPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHH---HHCCCCS--THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHH---HHHHhcC--cHHHHHHHHHHHHHc
Confidence 455555566666666666554321 22345556777777776 5555544 556788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHH
Q 045600 634 NKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLF 713 (899)
Q Consensus 634 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 713 (899)
|+++-|.+.|.+..+ +..|+-.+.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 888888887776433 34444445555666555555555444442 233444444455555555555
Q ss_pred Hh
Q 045600 714 GS 715 (899)
Q Consensus 714 ~~ 715 (899)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 293
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.95 E-value=0.46 Score=27.99 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHH
Q 045600 857 PGSYVMLHNIYASAGRWEDAYRVRS 881 (899)
Q Consensus 857 ~~~~~~l~~~y~~~g~~~eA~~~~~ 881 (899)
|.....|+.++...|+.++|..+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567889999999999999998875
No 294
>PRK09687 putative lyase; Provisional
Probab=89.92 E-value=25 Score=35.96 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=39.5
Q ss_pred CCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045600 482 VSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNL 561 (899)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 561 (899)
.++..+...-+.++++.|+..-...+.+.+..++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3455555555666666666433333333333333 233566677777774 577777776652 34555444444443
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.92 E-value=15 Score=39.16 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 821 PSVSILESLLGACRIHGNVELGEIISGMLFEMDP----ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
....+|..++..++++|.++.|...+.++...++ ..+.+...-+..+...|+..+|+..++......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3455788899999999999999999999988662 257788888999999999999999998887633
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.86 E-value=19 Score=34.62 Aligned_cols=24 Identities=8% Similarity=-0.148 Sum_probs=14.1
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCc
Q 045600 834 RIHGNVELGEIISGMLFEMDPENP 857 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~~ 857 (899)
...+++.+|+.+|+++....-+|+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 345566666666666665554443
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.76 E-value=13 Score=32.29 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCc
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGIS 788 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 788 (899)
....++.+...|+-++-.++++++.. +-.|++....-+..+|.+.|+..++.+++.++.+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44556667777777777777777764 34666677777777888888888888887777777754
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.70 E-value=0.7 Score=42.28 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC-----------hHHHHHHHHHHHh
Q 045600 839 VELGEIISGMLFEMDPENPGSYVMLHNIYASAGR-----------WEDAYRVRSCMKR 885 (899)
Q Consensus 839 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~-----------~~eA~~~~~~~~~ 885 (899)
+++|+.-++.++.++|+...++..+|++|...+. +++|.+.|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888999999999999999987763 4555555555554
No 299
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.54 E-value=23 Score=35.28 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 827 ESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 827 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
......|..+|.+.+|.++.++++.++|-+...+..|...|...|+--+|.+.++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33447789999999999999999999999999999999999999999899988887753
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.35 E-value=28 Score=35.69 Aligned_cols=20 Identities=5% Similarity=-0.193 Sum_probs=13.0
Q ss_pred HHHHhhCCHHHHHHHHHHHH
Q 045600 831 GACRIHGNVELGEIISGMLF 850 (899)
Q Consensus 831 ~~~~~~g~~~~a~~~~~~~~ 850 (899)
..+.+.++++.|...++-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556777777777776544
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.34 E-value=0.69 Score=30.94 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
.++.+|+.+|...|++++|++++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 47889999999999999999999988754
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.25 E-value=1.9 Score=43.27 Aligned_cols=60 Identities=27% Similarity=0.295 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+..++..+...|+.+.++..++++.+.+|-+...|..+..+|.+.|+...|+..|+.+..
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445566666777777777777777788887777888888888888888888777776654
No 303
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.95 E-value=13 Score=38.30 Aligned_cols=127 Identities=12% Similarity=0.083 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc--ccC----CHHHHHHHHHHHHHhCC---CCChhHHHHHHHHhHhcCC-
Q 045600 636 AKQAVAFFTELLGAGLEPDNVTVLSIISAGV--LIN----SLNLTHSLMAFVIRKGL---DKHVAVSNALMDSYVRCGN- 705 (899)
Q Consensus 636 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~- 705 (899)
+++.+++++.|.+.|+.-+..+|.+...... ... ....+..+++.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 5667788999999999988877766333322 222 34568889999988843 2334444444333 2333
Q ss_pred ---HHHHHHHHHhcC-----CCCH-HHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 045600 706 ---ISMARKLFGSLI-----YKDA-FSWSVMINGYGLYGD--GEAALELFKQMQLSGVRPNEITYLGVLS 764 (899)
Q Consensus 706 ---~~~A~~~~~~~~-----~~~~-~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 764 (899)
.++++.+|+.+. +.|. .....++..+-.... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 344556665554 2233 334444333322222 4578888999999988887766665544
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.82 E-value=16 Score=33.67 Aligned_cols=133 Identities=12% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCC--ChHHHHHHHhhcC
Q 045600 435 LAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGG--QFSYAFTLFHRMS 512 (899)
Q Consensus 435 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 512 (899)
++..+.+.+.++.|+...+..++..+.+.|.... +..++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3555666677788888888888888888776544 334445555555554444433332211 1233444444433
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 045600 513 TRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIK 579 (899)
Q Consensus 513 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 579 (899)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566777888899999999888775331 222234456666666666555555555544
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.49 E-value=20 Score=32.98 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=29.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
..+++.+...|++-+|.++..+....+...-..++.+-.+.+|...=..+++-..
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556667777777777777766533322233344555555555444334443333
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.45 E-value=4.6 Score=40.34 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=74.9
Q ss_pred hCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-CCC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 045600 684 KGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI-YKD--------AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP 754 (899)
Q Consensus 684 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 754 (899)
.|...+..+...++..-....++++++..+-++. .|+ .++|-.+ +. .-++++++.++..=.+-|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---ll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---LL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---HH-ccChHHHHHHHhCcchhcccc
Confidence 3555566666677777777788999998887776 332 2333333 33 247789999999888999999
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045600 755 NEITYLGVLSACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 755 ~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~ 785 (899)
|..+++.++..+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888743
No 307
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.15 E-value=33 Score=35.46 Aligned_cols=115 Identities=7% Similarity=-0.136 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHH----HhhCCH
Q 045600 771 LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG-------HLNEAFIFVKKLPCKPSVSILESLLGAC----RIHGNV 839 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~ 839 (899)
+..+|..+|++..+.|..+.......+...|...+ +...|...+.++...-++.....+...| ....|.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 55555555555555553332122223333333221 1224555555552222333333333333 123366
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCC
Q 045600 840 ELGEIISGMLFEMDPENPGSYVMLHNIYASAG---------------RWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 840 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---------------~~~eA~~~~~~~~~~~~ 888 (899)
+.|...++++.+... ....+.++ .+...| +...|...+......+.
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 777777777777666 56666666 555555 66777777777665554
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.13 E-value=0.92 Score=28.66 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 825 ILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667778888899999999999999998885
No 309
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.34 E-value=64 Score=37.44 Aligned_cols=211 Identities=12% Similarity=0.091 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH--HHHH
Q 045600 489 NALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGA-------VEEAVILLQRMQKEGVELDMV--TLIS 556 (899)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~--t~~~ 556 (899)
-++|-.+.|+|.+++|.++..+... .....+-..+..+....+ -++...-|++..+.....|+. ....
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 3466667788888888888843332 344556666777766432 235555666666543322432 3333
Q ss_pred HHHHHhcCCC-h-HH---HHH--HHHHH-HHhCCC-----CChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhH
Q 045600 557 FLPNLNKNGN-I-KQ---GMV--IHGYA-IKTGCV-----ADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLW 623 (899)
Q Consensus 557 ll~~~~~~g~-~-~~---a~~--~~~~~-~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 623 (899)
+|..|-...+ . +- .++ +++-. .+.... .+..++..|-....+-|. ..|.. ..++..|
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge--------~~F~~--~~~p~~Y 264 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE--------SHFNA--GSNPLLY 264 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G--------GGCTT--------H
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch--------hhccc--chhHHHH
Confidence 4444432211 1 10 111 11111 111110 112222222222111110 11111 1122222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh-CCCCChhHHHHHHHHhHh
Q 045600 624 NAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK-GLDKHVAVSNALMDSYVR 702 (899)
Q Consensus 624 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~ 702 (899)
...+.-.|+++.|++.+-+ ..+...+.+.+...+.-+.-.+-.+... ..+... .-.|..--+..||..|++
T Consensus 265 ---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 265 ---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp ---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred ---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 3445668999999998877 3345566777766666554333222222 222222 111122456777777776
Q ss_pred ---cCCHHHHHHHHHhcC
Q 045600 703 ---CGNISMARKLFGSLI 717 (899)
Q Consensus 703 ---~g~~~~A~~~~~~~~ 717 (899)
..+..+|.+.+--+.
T Consensus 337 ~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 337 SFEITDPREALQYLYLIC 354 (613)
T ss_dssp TTTTT-HHHHHHHHHGGG
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 457788888776665
No 310
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.91 E-value=46 Score=35.42 Aligned_cols=443 Identities=11% Similarity=0.099 Sum_probs=217.1
Q ss_pred CCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 045600 280 LFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNA---SVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSII 356 (899)
Q Consensus 280 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 356 (899)
+.|...|-.||.-|...|.+++-++++++|..|-+ .+|..-|++-....++.....+|.+-.......| .|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 45667888999999999999999999999987743 3688888888888888888888888777655433 333334
Q ss_pred HHhhccCCcccc------hHHHHHHHH-hCCCCc-hhHHHHHHHHH---HhcC------ChHHHHHHHhcCCCCCc----
Q 045600 357 PSCENYCSFQCG------ESLTACVIK-NGLGNQ-PSVLTALLSMY---AKLG------NIDSAKFLFDQIPNRNL---- 415 (899)
Q Consensus 357 ~a~~~~~~~~~a------~~~~~~~~~-~g~~~~-~~~~~~li~~~---~~~g------~~~~A~~~~~~~~~~~~---- 415 (899)
.-..+..+.-.+ -+.++.++. .+++|- ...|+..++.+ -..| ++|..+..+.++.....
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 333333322222 223333333 344443 23344433322 1223 34455555655543211
Q ss_pred ------chHHHHHHHHHH-------CCChhHHHHHHHHHHH--cCCCC----CHHHHHHHHHHhccCCChHHHH--HHHH
Q 045600 416 ------LCWNAMMSAYVR-------NRFWDASLAVFRQMQF--AGLNP----DAVSIISVLSGCSKLDDVLLGK--SAHA 474 (899)
Q Consensus 416 ------~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~~~~~~a~--~~~~ 474 (899)
..|..=+..... .--+..|...+++... .|.+. +..|++.+-+ ..... ....
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-------~s~S~WlNwIk 269 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-------TSDSNWLNWIK 269 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc-------cccchhhhHhh
Confidence 111111111110 1112334444444432 23221 2222222111 00000 0111
Q ss_pred HHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 045600 475 FSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDM 551 (899)
Q Consensus 475 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 551 (899)
.-.+.|+.....+...-| .-+++.... -....|-.--.-+...++-+.|+.....-.+ ..|.
T Consensus 270 wE~en~l~L~~~~~~qRi------------~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps- 334 (660)
T COG5107 270 WEMENGLKLGGRPHEQRI------------HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS- 334 (660)
T ss_pred HhhcCCcccCCCcHHHHH------------HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc-
Confidence 111222222111111111 011111111 1222333333344556666677666554332 3333
Q ss_pred HHHHHHHHHHh-cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh---------cCChhhhhhHHHHhhcCCCCChh
Q 045600 552 VTLISFLPNLN-KNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCN---------CGSTNDGRLCLLLFQMGDKREIS 621 (899)
Q Consensus 552 ~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~ 621 (899)
.+..+.-|. -..+-+.....|+.+.+ .|.+-|.+ -|+.+... ++.-.-...-..
T Consensus 335 --L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~---Ell~kr~~k~t~ 398 (660)
T COG5107 335 --LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSK---ELLLKRINKLTF 398 (660)
T ss_pred --hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccH---HHHHHHHhhhhh
Confidence 222222222 22333333333333321 11111110 11111111 111111123445
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 045600 622 LWNAIISVYVQTNKAKQAVAFFTELLGAG-LEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSY 700 (899)
Q Consensus 622 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 700 (899)
.|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...-.. +....+-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 66777777777777888888888888887 5666677777776554 45666777777654444222 222224455566
Q ss_pred HhcCCHHHHHHHHHhcCC---CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 045600 701 VRCGNISMARKLFGSLIY---KD--AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSAC 766 (899)
Q Consensus 701 ~~~g~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 766 (899)
.+.++-+.|..+|+...+ .+ ...|..+|.--..-|+...|..+=++|.+ +.|-..+.....+-|
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 677788888888876542 22 45677788777778888888888777777 566555444444433
No 311
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.77 E-value=32 Score=33.45 Aligned_cols=111 Identities=10% Similarity=-0.017 Sum_probs=58.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHH--HcCCccCc--chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 045600 762 VLSACSHAGLVEQSKMVFKSMV--EHGISQKM--EHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHG 837 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m~--~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 837 (899)
-...|...|.++.|-..+++.- -.+..|+. ..|..-...+...++...|.+++.+. .+.+.+-.
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~------------sr~lVrl~ 164 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC------------SRVLVRLE 164 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh------------hhHhhhhH
Confidence 3345566666655555555433 11333432 34444445555556666666665554 33344444
Q ss_pred CHHHHHHHHHHHHhc------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 838 NVELGEIISGMLFEM------DPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 838 ~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.+++|-..+.+-... .|+-...+...+-+|.-..++..|.+.++.--
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 454444443332221 23333456666777777788988888887643
No 312
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=2.1 Score=41.03 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=48.3
Q ss_pred CChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 805 GHLNEAFIFVKKL-PCKPSVSI-LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 805 g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
.++++|..-+.+. ...|...+ |..-+-.+.+.++++...+--++++++.|+.....+.|+........+++|+.++++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3444444444333 44555433 334444445566666666677777777777777777777777777777777777766
Q ss_pred HH
Q 045600 883 MK 884 (899)
Q Consensus 883 ~~ 884 (899)
..
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 63
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.52 E-value=2.9 Score=42.09 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=64.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC
Q 045600 728 INGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH 806 (899)
Q Consensus 728 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 806 (899)
.+.|.+.|.+++|+..|.+... +.| |.+++..-..+|.+..++..|..=.+..+... ..-...|..-..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999998876 788 88999999999999999998888877766322 0001223333333333455
Q ss_pred hHHHHHHHHhC-CCCCCHH
Q 045600 807 LNEAFIFVKKL-PCKPSVS 824 (899)
Q Consensus 807 ~~~A~~~~~~~-~~~p~~~ 824 (899)
..+|.+-++.. ...|...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 66666555554 5667643
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.36 E-value=6.1 Score=41.78 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=96.9
Q ss_pred HHHHHhCCCHHHHHH-HHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC
Q 045600 728 INGYGLYGDGEAALE-LFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH 806 (899)
Q Consensus 728 i~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 806 (899)
|.--...|+.-.|-+ ++..+....-.|+..... ...+...|+++.+.+.+..... -+.....+..+++......|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhh
Confidence 344455688777755 445555433445444333 3356788999999988877652 223345778888899999999
Q ss_pred hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH-HHHHH-HHHhcCC-hHHHH
Q 045600 807 LNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSY-VMLHN-IYASAGR-WEDAY 877 (899)
Q Consensus 807 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l~~-~y~~~g~-~~eA~ 877 (899)
|++|...-.-| + --.++............-|-++++...+++++.++|+....+ +.|.. -|...|+ +.||.
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 448 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAF 448 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHH
Confidence 99999988877 2 234555666666667778889999999999999997754443 33333 3555553 34443
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.15 E-value=3.9 Score=39.71 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCHHH-------HHHHHHHHHhcC--C----CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 826 LESLLGACRIHGNVEL-------GEIISGMLFEMD--P----ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~--p----~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+..+.+.|+..|+.+. |...++++.+.. | +.....+.+|.++.+.|++++|.++|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4445555666665333 444555555443 2 2346788999999999999999999999986553
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.09 E-value=16 Score=32.64 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=9.4
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 045600 799 DLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~ 817 (899)
..+...|+|++|..++++.
T Consensus 52 ~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 52 WLLIARGNYDEAARILREL 70 (153)
T ss_pred HHHHHcCCHHHHHHHHHhh
Confidence 3344455555555555554
No 317
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.09 E-value=1.2 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 852 (899)
+..|+..|...|++++|+.++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777777777777777775433
No 318
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.56 E-value=79 Score=36.80 Aligned_cols=94 Identities=15% Similarity=-0.085 Sum_probs=56.4
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCh
Q 045600 797 MVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDP---ENPGSYVMLHNIYASAGRW 873 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~ 873 (899)
-+..+...|+..+|...+..+....+......+.......|..+.++....+....+. --|..|......+.+.-..
T Consensus 413 ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 413 RVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 3455667788888887776663345566666777777788888888776654433210 1233455566666665566
Q ss_pred HHHHHHHHHHHhCCCcc
Q 045600 874 EDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 874 ~eA~~~~~~~~~~~~~~ 890 (899)
+.++-+--.-+|.+..+
T Consensus 493 ~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 493 PQSYAMAIARQESAWNP 509 (644)
T ss_pred CHHHHHHHHHHhcCCCC
Confidence 66664444444555543
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.39 E-value=6 Score=37.47 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCccCcchHHHHHHH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEH--GISQKMEHYACMVDL 800 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~ 800 (899)
.+.-++.+.+.+...+|+...++-.+ -+| |..+-..+++.+|-.|+|++|...++-.-+. ...+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667777888888888777666 456 4556667777888888888888887766522 223334566666654
Q ss_pred HhhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHH--HhhCCHHHHHHHHHHHHhcCCCCchh
Q 045600 801 LGRTGHLNEAFIFVKKL-----PCKPSVSILESLLGAC--RIHGNVELGEIISGMLFEMDPENPGS 859 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~ 859 (899)
-.-.. ++|.-- ...|.+.-...+..+. ...|..+.....-+++++..|..+.-
T Consensus 82 ea~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 82 EAARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHHHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 32111 122211 1113333333444333 33445666778888888888765443
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.27 E-value=98 Score=37.59 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=9.6
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 045600 797 MVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~ 817 (899)
|+.-+...++.-+|-++..+.
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHH
Confidence 444444444444444444443
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.23 E-value=5.6 Score=37.48 Aligned_cols=75 Identities=24% Similarity=0.269 Sum_probs=53.9
Q ss_pred hhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHH
Q 045600 802 GRTGHLNEAFIFVKKLPCKP--SVSILESLLGACRIHGNVELGEIISGMLFEMDPE----NPGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 802 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~e 875 (899)
.+.|+ ++|.+.|-.+...| +...+...+..|....|.++++.++-+++++.++ ||..+..|+.+|.++|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 56777776663333 2233444445555677999999999999998643 68999999999999999998
Q ss_pred HH
Q 045600 876 AY 877 (899)
Q Consensus 876 A~ 877 (899)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 322
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.07 E-value=4.2 Score=39.07 Aligned_cols=63 Identities=10% Similarity=-0.127 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+.++...+...|++-++++....++...|.|..+|+..+.+....=+.+||..-|+++.+..+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 344455667788888888888888888888888888888888888888888888888776444
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.94 E-value=3.5 Score=38.95 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
....+..+.+.+..++|+...+.- +.+|... .-..++..++..|++++|..-++.+-++.|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344566777788888888776654 5555444 4556667788888888888888888888887543
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.84 E-value=3.5 Score=33.50 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 844 IISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
..+++.++.+|+|....+.++..|...|++++|++.+-++.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555666666666666666666666666666666655543
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.67 E-value=7.5 Score=27.76 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 827 ESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 827 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
..+.-++.+.|+++.|.+..+.+++.+|+|..+....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3455677888999999999999999999887766544
No 326
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.61 E-value=44 Score=38.23 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=78.5
Q ss_pred hCCCHHHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHcc----C-CHHHHHHHHHHHHHcCCccCcchHHHHHHH
Q 045600 733 LYGDGEAALELFKQMQL-------SGVRPNEITYLGVLSACSHA----G-LVEQSKMVFKSMVEHGISQKMEHYACMVDL 800 (899)
Q Consensus 733 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~l~~~~~~~----g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 800 (899)
...|.+.|+..++.+.+ .| +......+...|.+. . +.+.|+.++.+..+.|. |+.. ..+...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~--~~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQ--YLLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHH--HHHHHH
Confidence 44466666666666554 44 222344444444442 2 56667777777766552 2222 223333
Q ss_pred Hhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHH----HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CC
Q 045600 801 LGRT---GHLNEAFIFVKKLPCKPSVSILESLLGAC----RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASA-GR 872 (899)
Q Consensus 801 ~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~ 872 (899)
+... .+...|.+++......-.......+...+ ....+.+.|...++++.+.+ ++.+...++..|.-- ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc
Confidence 3322 24567777777763222222222222222 12336777888888888777 344444444444432 77
Q ss_pred hHHHHHHHHHHHhCCCc
Q 045600 873 WEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 873 ~~eA~~~~~~~~~~~~~ 889 (899)
++.+.-.+..+.+.|.+
T Consensus 413 ~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYE 429 (552)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 77777777666665543
No 327
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.15 E-value=50 Score=32.60 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 045600 523 ISRCVQNGAVEEAVILLQRMQKEG-V-ELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYC 597 (899)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 597 (899)
+..-.+.|++++|.+.|+.+.... . +-...+...++-++.+.+++++|....++..+.-......-|...+.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 444556778888888888777631 1 11345566666777777778777777777776544333334444444444
No 328
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.04 E-value=12 Score=35.24 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHccCCHHHHHHHHHHHH---HcCCccCc----chH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRPNE--ITYLGVLSACSHAGLVEQSKMVFKSMV---EHGISQKM----EHY 794 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~~----~~~ 794 (899)
+..+..-|++.|+.+.|++.+.++.+....|.. ..+..++......+++..+...+.+.. +.+-.++. ..|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 444555555555555555555555554333322 234444555555555555555555444 11111111 111
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 045600 795 ACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 795 ~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
. +-.+...+++.+|-+.|-..
T Consensus 119 ~--gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 E--GLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred H--HHHHHHhchHHHHHHHHHcc
Confidence 1 12234467777777776655
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.00 E-value=2.4 Score=26.32 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
+..++..+.+.|+.+.|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456677788899999999999999988874
No 330
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.70 E-value=69 Score=35.13 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=101.1
Q ss_pred HHHHHHhcCCCCCCCc--HHHHHHHhccCCChhhhhHHHHHHHHhCCCCchh--hhhHHHHHHHhcCChHHHHHHhccCC
Q 045600 134 VYIKCRLSGCPSDDFT--FPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLV--IQTALVDFYAKKGEMLTARLLFDQIP 209 (899)
Q Consensus 134 ~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~y~~~g~~~~A~~~f~~~~ 209 (899)
+.+.+.+.|..|+... ..+.|..++..|+. ++...+++.|..++.. ...+.+...++.|+.+.+..+++.-.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDS----EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence 3444555677665422 23344445556665 3455566677655532 22345666777888888888877543
Q ss_pred CC----CceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHhhccCChhhhhHHHHHHHHhCCCCCc
Q 045600 210 LA----DLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVST--FSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDD 283 (899)
Q Consensus 210 ~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 283 (899)
.. +..-++.| ...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+ ..+++.|..++.
T Consensus 93 ~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v----~~Ll~~g~~~~~ 163 (413)
T PHA02875 93 FADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI----ELLIDHKACLDI 163 (413)
T ss_pred cccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhcCCCCCC
Confidence 22 11122333 333445554 45555556676665432 22345555566665443 344455544332
Q ss_pred c--hhhHHHHhhhcCCChhhHHHHHhhcCCCCccc---HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 045600 284 F--LVPALISMYAGDLDLSTARKLFDSLLEKNASV---WNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDL 349 (899)
Q Consensus 284 ~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 349 (899)
. ...+-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+. ++.+-+.+.|..++.
T Consensus 164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 1 12233344455677777766666544433221 22344434455554 344455556666654
No 331
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.57 E-value=5.6 Score=37.54 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHH
Q 045600 768 HAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 844 (899)
..|-+.-|..=|.+.. .+.|+. ..|+.+.--+...|+++.|.+.|+.. ...|... +...-+-.+.--|++..|.+
T Consensus 77 SlGL~~LAR~DftQaL--ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhh--hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 3344444444444333 334443 44554555555555555555555544 3333221 11111111222344555555
Q ss_pred HHHHHHhcCCCCc
Q 045600 845 ISGMLFEMDPENP 857 (899)
Q Consensus 845 ~~~~~~~~~p~~~ 857 (899)
-+.+.-+.+|+||
T Consensus 155 d~~~fYQ~D~~DP 167 (297)
T COG4785 155 DLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHhcCCCCh
Confidence 5555545455444
No 332
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.47 E-value=1.4 Score=27.94 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=7.9
Q ss_pred chHHHHHHHHhhcCChHHH
Q 045600 792 EHYACMVDLLGRTGHLNEA 810 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A 810 (899)
..|..+...|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 3344444444444444443
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.17 E-value=2.5 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+..++.+|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4677888888888888888888887764
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.98 E-value=2.7 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 861 VMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 861 ~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
..|+.+|...|+.+.|.++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 578999999999999999999998644
No 335
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.74 E-value=34 Score=38.76 Aligned_cols=193 Identities=17% Similarity=0.259 Sum_probs=106.9
Q ss_pred HHhhcCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----------HHHHHHHHhcccCCHHHHHH
Q 045600 610 LLFQMGDKREI---SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNV----------TVLSIISAGVLINSLNLTHS 676 (899)
Q Consensus 610 ~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~ 676 (899)
++..+...|++ .+-..++-.|....+++..+++.+.++.. ||.. .|.-.+.---+.|+-+.|+.
T Consensus 188 ~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~ 264 (1226)
T KOG4279|consen 188 KMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALN 264 (1226)
T ss_pred HHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHH
Confidence 44444444433 34445556666777788888888777763 3321 12222333344567777777
Q ss_pred HHHHHHHh-C-CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 045600 677 LMAFVIRK-G-LDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP 754 (899)
Q Consensus 677 ~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 754 (899)
..-.+.+. | +.|| +||-+|++ +..|- +-+.|...+..+.|++.|++..+ ++|
T Consensus 265 ~~l~lve~eg~vapD---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP 318 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPD---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEP 318 (1226)
T ss_pred HHHHHHHhcCCCCCc---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCc
Confidence 77666665 3 3344 34445542 22222 11233444566778888888877 777
Q ss_pred ChhH---HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 045600 755 NEIT---YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLG 831 (899)
Q Consensus 755 ~~~t---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 831 (899)
+..+ +..|+.+-.+. ++...+ +..-| ..|...+.+.|..+.-.++++-. .++.
T Consensus 319 ~~~sGIN~atLL~aaG~~--Fens~E----lq~Ig--------mkLn~LlgrKG~leklq~YWdV~----------~y~~ 374 (1226)
T KOG4279|consen 319 LEYSGINLATLLRAAGEH--FENSLE----LQQIG--------MKLNSLLGRKGALEKLQEYWDVA----------TYFE 374 (1226)
T ss_pred hhhccccHHHHHHHhhhh--ccchHH----HHHHH--------HHHHHHhhccchHHHHHHHHhHH----------Hhhh
Confidence 6543 44444332211 111111 11112 12445566777777666655542 3455
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 832 ACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 832 ~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
+-.-.+|+.+|++..+++.++.|+
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCCc
Confidence 556778888899999999998887
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.65 E-value=1.3e+02 Score=36.50 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=22.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 761 GVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 761 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
.|+.-+..++++-+|-++..+... .....+..|+++..|++|..+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s--------d~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS--------DPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc--------CHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 344444555555555555444331 1122344455555555555554443
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.64 E-value=1.1e+02 Score=35.37 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.0
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCHH
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKDAF 722 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 722 (899)
..|+..|...+++.+|.+++-....+++.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 44888999999999999999888776554
No 338
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.69 E-value=1.2 Score=44.97 Aligned_cols=88 Identities=11% Similarity=0.162 Sum_probs=57.0
Q ss_pred hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 045600 803 RTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 803 ~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~ 880 (899)
..|.++.|++.+.+. ...|... .+..-...+.+.++...|++-+..+++++|+....|-..+.+...+|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 455566666666655 3344333 23344455666666777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCcc
Q 045600 881 SCMKRSRLKK 890 (899)
Q Consensus 881 ~~~~~~~~~~ 890 (899)
....+.+.+.
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 7766655543
No 339
>PRK09687 putative lyase; Provisional
Probab=80.45 E-value=72 Score=32.63 Aligned_cols=77 Identities=14% Similarity=-0.029 Sum_probs=31.3
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 045600 691 AVSNALMDSYVRCGNISMARKLFGSLI-YKDAFSWSVMINGYGLYG-DGEAALELFKQMQLSGVRPNEITYLGVLSACSH 768 (899)
Q Consensus 691 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 768 (899)
.+-...+.++++.++. +|...+-.+. .+|...-...+.++.+.+ +...+...+..+.. .+|...-...+.++.+
T Consensus 143 ~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 143 NVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHc
Confidence 3334444455555442 2333333322 344433333333443332 12334444444442 3344444444445555
Q ss_pred cCC
Q 045600 769 AGL 771 (899)
Q Consensus 769 ~g~ 771 (899)
.|+
T Consensus 219 ~~~ 221 (280)
T PRK09687 219 RKD 221 (280)
T ss_pred cCC
Confidence 544
No 340
>PRK10941 hypothetical protein; Provisional
Probab=80.44 E-value=8.9 Score=38.68 Aligned_cols=62 Identities=26% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+++-.++.+.++++.|.++.+.++.+.|+++.-+--.|-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45555777788888888888888888888888888888888888888888888777766533
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.14 E-value=1.2e+02 Score=34.83 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=99.4
Q ss_pred CHHHHHHHHHhcCC-CCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 045600 705 NISMARKLFGSLIY-KDAFSWSVMINGYG----LYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVF 779 (899)
Q Consensus 705 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~ 779 (899)
+...|.++|..... -.+..+-.+...|. ...+.+.|..++++..+.| .|-..--...+..+.. ++++.+...+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 45566666666542 22332222222222 2246778888888888776 3332222222223333 6777777666
Q ss_pred HHHHHcCCccCcchHHHHHHHH---hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHH
Q 045600 780 KSMVEHGISQKMEHYACMVDLL---GR----TGHLNEAFIFVKKLPCKPSVSILESLLGACRI----HGNVELGEIISGM 848 (899)
Q Consensus 780 ~~m~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 848 (899)
..+.+.|.+.....-..+.... .. ..+.+.+...+.+....-+......+...+.. ..+.+.|...+.+
T Consensus 421 ~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~ 500 (552)
T KOG1550|consen 421 LYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYAR 500 (552)
T ss_pred HHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHH
Confidence 6666555433221111111111 11 22455666666666444444445555544322 3468888888888
Q ss_pred HHhcCCCCchhHHHHHHHHHhc-C--ChHHHHHHHHHHHhCCC
Q 045600 849 LFEMDPENPGSYVMLHNIYASA-G--RWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 849 ~~~~~p~~~~~~~~l~~~y~~~-g--~~~eA~~~~~~~~~~~~ 888 (899)
+.+.. +....+|+..+..- | ++..|..++++..+.+.
T Consensus 501 a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 501 ASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred HHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 87776 78888888888752 2 26899999998876543
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.96 E-value=14 Score=36.55 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=36.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH-------HHHHHHHHccCCHHHHHHHHH
Q 045600 727 MINGYGLYGDGEAALELFKQMQLSGVRPNEITY-------LGVLSACSHAGLVEQSKMVFK 780 (899)
Q Consensus 727 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~l~~~~~~~g~~~~A~~~~~ 780 (899)
+.+-..+.+++++|+..+.++...|+..|..+. .-+...|...|++....+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 445566778899999999999888887776543 334455666666655544443
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.71 E-value=66 Score=31.71 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHhHHHHHHHHhcccCCHHHHHHHHHHHHH----h-CCCCChh
Q 045600 622 LWNAIISVYVQTNKAKQAVAFFTELLGA---GL--EPDNVTVLSIISAGVLINSLNLTHSLMAFVIR----K-GLDKHVA 691 (899)
Q Consensus 622 ~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~-g~~~~~~ 691 (899)
..-.+|..+.+.+++++.++.+.+|..- .+ .-+..+.++++.-.+...+.+.-..+++.-.. . +-..-..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 4445677777777777777777776531 11 12234455555544444444444444333221 1 1111122
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcC----C----CC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 692 VSNALMDSYVRCGNISMARKLFGSLI----Y----KD-------AFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 692 ~~~~li~~~~~~g~~~~A~~~~~~~~----~----~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
+-.-|...|...|.+.+-.+++.++. . .| ...|..-|..|...++-.+-..++++..
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 22344455555555555555555442 0 01 1244444555555555555555555544
No 344
>PRK12798 chemotaxis protein; Reviewed
Probab=79.52 E-value=92 Score=33.27 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=113.9
Q ss_pred cCCHHHHHHHHHhcC----CCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHccCCHH
Q 045600 703 CGNISMARKLFGSLI----YKDAFSWSVMINGY-GLYGDGEAALELFKQMQLSGVRPNE----ITYLGVLSACSHAGLVE 773 (899)
Q Consensus 703 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l~~~~~~~g~~~ 773 (899)
.|+.++|.+.+..+. .+....|-.|+.+- ....++.+|+++|++..= .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 688889999888886 33455666676654 445689999999998775 45643 23444455667889998
Q ss_pred HHHHHHHHHH-HcCCccCc-chHHHHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 045600 774 QSKMVFKSMV-EHGISQKM-EHYACMVDLLGRTG---HLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGM 848 (899)
Q Consensus 774 ~A~~~~~~m~-~~~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 848 (899)
++..+-.+-. .....|=. ..+..++..+.+.+ ..+.-..++..|.-.-....|..+.+.-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8777666555 33333333 22233333443333 3444455555654333455788888888999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHh-----cCChHHHHHHHHHHH
Q 045600 849 LFEMDPENPGSYVMLHNIYAS-----AGRWEDAYRVRSCMK 884 (899)
Q Consensus 849 ~~~~~p~~~~~~~~l~~~y~~-----~g~~~eA~~~~~~~~ 884 (899)
++.+..+ ...-...+.+|.. ..++++|++.+..+-
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9998733 4444445555543 356777777666553
No 345
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.68 E-value=2.6 Score=38.10 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=61.7
Q ss_pred HHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHH
Q 045600 355 IIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDAS 434 (899)
Q Consensus 355 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 434 (899)
+++.+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777778888888888777777788889999999999888888888884433 3345567777777777777
Q ss_pred HHHHHHHH
Q 045600 435 LAVFRQMQ 442 (899)
Q Consensus 435 ~~~~~~m~ 442 (899)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77776653
No 346
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.13 E-value=1.5e+02 Score=34.94 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=108.6
Q ss_pred hHhcCCHHHHHHHHHhcC----CCCH-------HHHHHHHH-HHHhCCCHHHHHHHHHHHHHc----CCCCChhHHHHHH
Q 045600 700 YVRCGNISMARKLFGSLI----YKDA-------FSWSVMIN-GYGLYGDGEAALELFKQMQLS----GVRPNEITYLGVL 763 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l~ 763 (899)
.....++++|..++.+.. .|+. ..|+.+-. .....|++++|+++.+...+. -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888887653 2221 24554433 234568889998888877663 1223345566667
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCccCcchHHHH-----HHHHhhcCChHHHH--HHHHhC-----CCCCCH----HHHH
Q 045600 764 SACSHAGLVEQSKMVFKSMVEHGISQKMEHYACM-----VDLLGRTGHLNEAF--IFVKKL-----PCKPSV----SILE 827 (899)
Q Consensus 764 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----~~~~~~~g~~~~A~--~~~~~~-----~~~p~~----~~~~ 827 (899)
.+..-.|++++|..+.++..+..-.-+...+..+ ...+...|+...|. ..+... +.+|.. .+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7778889999999888877643323333333322 23456677333322 222221 333432 2233
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcC----CCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCc
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMD----PEN---PGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGF 894 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~ 894 (899)
.+++++.+ .+.+..-.....+.. |.. ...+..|+.++...|+.++|...++++..-.....|..
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 33444333 444444444444433 321 22335788999999999999999988876555544443
No 347
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=77.80 E-value=29 Score=32.62 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc--chHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM--EHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
..+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.++....-.|+|..+...+.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46777888899999999999999998876555543 56667888888888998888887776
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.16 E-value=13 Score=40.63 Aligned_cols=81 Identities=14% Similarity=0.060 Sum_probs=38.8
Q ss_pred cCChHHHHHHHHhC-CCCCCHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 045600 804 TGHLNEAFIFVKKL-PCKPSVS--ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 804 ~g~~~~A~~~~~~~-~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~ 880 (899)
.|+...|.+.+..+ ..+|... .+-.|.....+.|-.-.|-.++.+.+.+....|-.++.+|++|....+.++|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 35555555544443 2222211 12233344444444444555555555555555555555555555555555555555
Q ss_pred HHHH
Q 045600 881 SCMK 884 (899)
Q Consensus 881 ~~~~ 884 (899)
+.+.
T Consensus 700 ~~a~ 703 (886)
T KOG4507|consen 700 RQAL 703 (886)
T ss_pred HHHH
Confidence 5544
No 349
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.12 E-value=11 Score=38.34 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=74.8
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC--CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSV----SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHN 865 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 865 (899)
.+|.-=++-|.+.+++..|...+.+. ...+|+ ..|..-..+-..-|++..++.-..+++..+|.+..+|+.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 45555678888999999999998776 222333 335555556667899999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 045600 866 IYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 866 ~y~~~g~~~eA~~~~~~~~~ 885 (899)
++....++++|..+.++..+
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999998888888776543
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.03 E-value=91 Score=34.15 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcch---HHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCH
Q 045600 393 MYAKLGNIDSAKFLFDQIPNRNLLC---WNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDA 450 (899)
Q Consensus 393 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (899)
..+..|+.+-+..+++.-..++... ..+.+...+..|+.+ +.+.+.+.|..|+.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3445566665555555444333221 123333334445443 34444556655553
No 351
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.40 E-value=82 Score=33.63 Aligned_cols=121 Identities=13% Similarity=0.185 Sum_probs=72.2
Q ss_pred CC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH---HcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHH
Q 045600 753 RP-NEITYLGVLSACSHAGLVEQSKMVFKSMV---EHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSIL 826 (899)
Q Consensus 753 ~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 826 (899)
.| ...|+..+...+..+|+.+.|.+++++.+ +....|....+ .. -...|+ .++ ...-+...|
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~---~~-~~~~g~--------~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF---RS-NLTSGN--------CRLDYRRPENRQFF 103 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh---hc-ccccCc--------cccCCccccchHHH
Confidence 44 45577777778888888888888888775 11111111000 00 000110 011 111233334
Q ss_pred HHH---HHHHHhhCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 045600 827 ESL---LGACRIHGNVELGEIISGMLFEMDPE-NPGSYVMLHNIYA-SAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 827 ~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~eA~~~~~~~~~ 885 (899)
.++ +..+.+.|-+..|.++.+.++.++|. ||-.....++.|+ +.++++--+++.+....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 433 45567888889999999999999988 8888877777777 66777666666665543
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.22 E-value=15 Score=32.04 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=49.5
Q ss_pred ccCcchHHHHHHHHhhcCChHH---HHHHHHhC-C-CCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 045600 788 SQKMEHYACMVDLLGRTGHLNE---AFIFVKKL-P-CKPS--VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSY 860 (899)
Q Consensus 788 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 860 (899)
.++..+-..+.+++.+..+.++ .+.++++. + -.|+ ...+.-|.-++.+.++++.+.++.+.+++.+|+|+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4555666678888887765544 45566665 2 2232 22344555667788888888888888888888877765
Q ss_pred HH
Q 045600 861 VM 862 (899)
Q Consensus 861 ~~ 862 (899)
..
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
Confidence 54
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.44 E-value=19 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=48.5
Q ss_pred HHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 045600 288 ALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFV 353 (899)
Q Consensus 288 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 353 (899)
.-+..+.+.|++++|..+.+.+.-||...|-++-. -+.|..+++..-+.+|..+| .|...+|.
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 33455778999999999999999999999988765 46777777777788887776 45555553
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.39 E-value=1.4e+02 Score=32.69 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=99.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
|....-+++..+...-+..-...+-.+|..-| -+...|..++..|... ..+.-..+|+++.+..+. ++..-.-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34445566777777777777777888888754 5677788888888777 556667777777777665 5555566777
Q ss_pred HhHhcCCHHHHHHHHHhcCCC------CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHc
Q 045600 699 SYVRCGNISMARKLFGSLIYK------DA---FSWSVMINGYGLYGDGEAALELFKQMQLS-GVRPNEITYLGVLSACSH 768 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l~~~~~~ 768 (899)
.|-+ ++...+..+|.+.... +. ..|..+... -..+.+..+.+..++... |..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7766 7778888888776411 11 144444431 123555566665555543 222233445555556666
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 045600 769 AGLVEQSKMVFKSMVEHG 786 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~ 786 (899)
..++++|.+++..+.++.
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 677777777777666443
No 355
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.23 E-value=19 Score=29.31 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=39.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 815 KKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 815 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
-.+...|++.+..+.+++|++-+|+..|+++++-+..+..++...|-.+
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 3346789999999999999999999999999998887766555555544
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.44 E-value=21 Score=29.41 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=36.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 816 KLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 816 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
.+...|++.+..+.+.+|++-+|+..|+++++.+..+-.+....|..+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 346789999999999999999999999999999998887766566655
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.30 E-value=21 Score=33.81 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH---HcCCccCcchHHHHHHHHhhcCChHHHH
Q 045600 738 EAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMV---EHGISQKMEHYACMVDLLGRTGHLNEAF 811 (899)
Q Consensus 738 ~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 811 (899)
+.|.+.|-++...+.--+ ......+..|....+.+++.+++-+.. ..+-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555554433322 223333333333556666666666555 2223556677777777777777776664
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.35 E-value=25 Score=37.51 Aligned_cols=135 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred hHhcCCHHHHHH-HHHhcC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHH
Q 045600 700 YVRCGNISMARK-LFGSLI----YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQ 774 (899)
Q Consensus 700 ~~~~g~~~~A~~-~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~ 774 (899)
-...|++-.|.+ ++..+. .|+.+... ...+...|+++.+.+.+...... +-....+...+++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 344677766654 443333 33433333 33456779999999888766542 44466788999999999999999
Q ss_pred HHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHH--HHhhCC
Q 045600 775 SKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGA--CRIHGN 838 (899)
Q Consensus 775 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~--~~~~g~ 838 (899)
|...-+.|....++. ++....-...--..|-+|++...+++. -..|....|-.++.. |...|+
T Consensus 376 a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 376 ALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 999999988555442 222222222334557788998888887 334444556555544 344443
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.31 E-value=7 Score=23.33 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 825 ILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
.+..+...+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455666677777788888888777777664
No 360
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.22 E-value=1.2e+02 Score=31.02 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=13.4
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 045600 729 NGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 729 ~~~~~~g~~~~A~~~~~~m~ 748 (899)
..+.+.++++.|.+.|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 44556678888888777443
No 361
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.20 E-value=30 Score=34.90 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=67.3
Q ss_pred hCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCC-CCc-----ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh
Q 045600 277 SGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLE-KNA-----SVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLV 350 (899)
Q Consensus 277 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 350 (899)
.|.+....+...++..-....++++++..+-++.. ++. .+-.+.++ ++-.-++++++.++..=.+.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34455555666666666666778888777666532 111 11122222 233446778888888888888888888
Q ss_pred hHHHHHHHhhccCCcccchHHHHHHHHhC
Q 045600 351 TFVSIIPSCENYCSFQCGESLTACVIKNG 379 (899)
Q Consensus 351 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 379 (899)
|+..+|..+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888887777776654
No 362
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=71.69 E-value=14 Score=30.04 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhHHHHHHH-HhCCCCchhhhhHHHH
Q 045600 128 HADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGREIHCVIF-RTGYHQNLVIQTALVD 190 (899)
Q Consensus 128 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~ 190 (899)
..++.+-++.+....+.|+.....+.|+||-|..++..|..+++-+. |.|. +..+|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34556666677777788888888888888888888888888888665 4443 3345665554
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.43 E-value=44 Score=27.44 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 045600 390 LLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIIS 455 (899)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 455 (899)
-+..+.+.|++++|..+.+...-||+..|-++-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3455678899999999999998899999887755 45677777777777777766 455444443
No 364
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.71 E-value=11 Score=24.82 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQL 749 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 749 (899)
+++.+...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555666666666666666655543
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.35 E-value=96 Score=36.95 Aligned_cols=26 Identities=15% Similarity=0.494 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLG 648 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~ 648 (899)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66677777777777777777777766
No 366
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.21 E-value=4.2 Score=43.39 Aligned_cols=98 Identities=8% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCH
Q 045600 763 LSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS-ILESLLGACRIHGNV 839 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~ 839 (899)
+..+...+.++.|..++.+++ .+.|+. ..|..-..++.+.+++..|+.-..++ ...|... .|.--+.++..-+..
T Consensus 11 an~~l~~~~fd~avdlysKaI--~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI--ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH--hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 334556667777777777776 344544 33333446666667666666555444 4444322 222223444555566
Q ss_pred HHHHHHHHHHHhcCCCCchhHHH
Q 045600 840 ELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 840 ~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
.+|...++....+.|+++.+--.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHH
Confidence 66777777777777766655443
No 367
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.81 E-value=7.6 Score=37.08 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=27.2
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 835 IHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 835 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
+.+|.+.+.+.+.+++++-|+....|..++..-.+.|+++.|.+.|++..+.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34455555555555555555555555555555555555555555555544433
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.77 E-value=11 Score=29.26 Aligned_cols=45 Identities=7% Similarity=0.043 Sum_probs=36.0
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHH---HHHHHHhcCChHHHHHH
Q 045600 835 IHGNVELGEIISGMLFEMDPENPGSYVM---LHNIYASAGRWEDAYRV 879 (899)
Q Consensus 835 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~---l~~~y~~~g~~~eA~~~ 879 (899)
..++.+.|+..++++++..++.+.-+.. |+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999998776665544 55667888999998876
No 369
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.43 E-value=9.9 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.059 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
.++.++-++++.|++++|.++.+.+.+..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4678999999999999999999999875543
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.19 E-value=2.4e+02 Score=33.80 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045600 518 SWNTLISRCVQNGAVEEAVILLQRMQK 544 (899)
Q Consensus 518 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 544 (899)
-|..|+..|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467778888888888888888887766
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.18 E-value=82 Score=27.70 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHh-cCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 820 KPSVSILESLLGACRIHG---NVELGEIISGMLFE-MDPE-NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+...+--.+.+++.... |..+++.+++.+.+ ..|+ +....+.|+-.+++.|+|++|+++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344444445555554433 34455556666654 2232 33444556666666666666666666655433
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.65 E-value=70 Score=34.44 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=21.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 045600 733 LYGDGEAALELFKQMQLSGVRPNEI--TYLGVLSACS--HAGLVEQSKMVFKSMV 783 (899)
Q Consensus 733 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~l~~~~~--~~g~~~~A~~~~~~m~ 783 (899)
+.+++..|.++++.+.+. +.++.. .+..+..+|. ..-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444555555555555543 333222 2333333332 3334455555555443
No 373
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.40 E-value=76 Score=35.31 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=76.0
Q ss_pred HHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHH
Q 045600 698 DSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKM 777 (899)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~ 777 (899)
+...+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3455778888888877654 3556788888888889999999888887765 5566666777777665555
Q ss_pred HHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH
Q 045600 778 VFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSV 823 (899)
Q Consensus 778 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 823 (899)
+-....+.|. .+.-..+|...|+++++.+++.+-+.-|..
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence 5555554442 233445677888999998888877544544
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.54 E-value=21 Score=39.13 Aligned_cols=75 Identities=15% Similarity=-0.004 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
...|.+.+.+.|-..+|-.++... -....+-+...+++++..-.+++.|++.++++.+++|+++..-+.|-.+-+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 334455555555555555544332 112233345555555656666666666666666666666665555544433
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.03 E-value=37 Score=33.95 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCccCcchH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV-----EHGISQKMEHY 794 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 794 (899)
++.....|..+|.+.+|.++-++.+. +.| +...+..|+..+...||--.+...++++. +.|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455677788888888888888777 566 66777778888888888777766666654 44665554433
No 376
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.25 E-value=1.6e+02 Score=32.04 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCc
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGF 894 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~ 894 (899)
-++++....+...+..-.+.+.....+.+.+...-++.++..|++.+|.+.+.. .++.++||.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g~ 274 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAGG 274 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccCc
Confidence 345556666677777667777766678888999999999999999999987754 466676663
No 377
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.05 E-value=1.8e+02 Score=31.61 Aligned_cols=106 Identities=14% Similarity=-0.009 Sum_probs=66.5
Q ss_pred HHHccCCHHHHHHHHHHHH---HcCCccC-----cchHHHHHHHHhhcCChHHHHHHHHhC----------CCCCC----
Q 045600 765 ACSHAGLVEQSKMVFKSMV---EHGISQK-----MEHYACMVDLLGRTGHLNEAFIFVKKL----------PCKPS---- 822 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~---~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~---- 822 (899)
-+.-.|++.+|.+++...- ..|...+ ...|+.|.-++.+.|.+.-+..+|.+. +.+|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456677888777765432 2222222 123345555555666665555554433 23332
Q ss_pred ------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 045600 823 ------VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASA 870 (899)
Q Consensus 823 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 870 (899)
-.+....+-.+...|+...|.+.+.++......+|..|..|+.+....
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 234455666778889999999999999988888899999998887653
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.01 E-value=26 Score=28.74 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=35.7
Q ss_pred HhhCCHHHHHHHHHHHHhcCCC----C-----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 834 RIHGNVELGEIISGMLFEMDPE----N-----PGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
.+.||+..|.+.+.+....... . ..+...++.+....|++++|+..+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777776555555544321 1 34556788889999999999999998764
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.90 E-value=14 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRS 881 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~ 881 (899)
..+..++-.+..+|++++|+++++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356778899999999999999955
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.82 E-value=18 Score=28.20 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=19.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCccC-c-chHHHHHHHHhhcCChHHHHH
Q 045600 768 HAGLVEQSKMVFKSMVEHGISQK-M-EHYACMVDLLGRTGHLNEAFI 812 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~ 812 (899)
.++..++|+..|+...+.-..+. . .++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444442222211 1 344445555555555555443
No 381
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.34 E-value=96 Score=30.28 Aligned_cols=99 Identities=9% Similarity=-0.086 Sum_probs=62.1
Q ss_pred hHhcCCHHHHHHHHHhcC--CCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHH
Q 045600 700 YVRCGNISMARKLFGSLI--YKDA-FSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQS 775 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A 775 (899)
|....+++.|+..+.+.+ .|++ .-|+.-+-.+.+.++++.+..--.+..+ +.||.. ....+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334456667777666665 5555 3455666677777788887777666666 778765 344445566777778888
Q ss_pred HHHHHHHH----HcCCccCcchHHHHHHH
Q 045600 776 KMVFKSMV----EHGISQKMEHYACMVDL 800 (899)
Q Consensus 776 ~~~~~~m~----~~~~~p~~~~~~~l~~~ 800 (899)
...+.+.. +..+++.......|..+
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 88777764 33344444555555444
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.22 E-value=3.3e+02 Score=31.71 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=28.8
Q ss_pred hCCHHHHHHHHHHHHhcC---CCCch-hH-----HHHHHHHHhcCChHHHHHHHHHHH
Q 045600 836 HGNVELGEIISGMLFEMD---PENPG-SY-----VMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.|+..+.......+...- |+... .| ..+.+.|..+|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 666655444433333322 33222 22 356666888899999988887764
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.32 E-value=59 Score=26.01 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q 045600 675 HSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAAL 741 (899)
Q Consensus 675 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 741 (899)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. ..+..|..++.++...|.-+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3445555555533 33333333333335678888888888888 66777888888888877765554
No 384
>PHA03100 ankyrin repeat protein; Provisional
Probab=58.74 E-value=2.5e+02 Score=31.51 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCchhh--hhHHHHHHH--hcCChHHHHHHhccC
Q 045600 168 EIHCVIFRTGYHQNLVI--QTALVDFYA--KKGEMLTARLLFDQI 208 (899)
Q Consensus 168 ~~~~~~~~~g~~~~~~~--~~~l~~~y~--~~g~~~~A~~~f~~~ 208 (899)
++...+++.|..++... ..+.+...+ +.|+.+-...+++.-
T Consensus 87 ~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g 131 (480)
T PHA03100 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG 131 (480)
T ss_pred HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC
Confidence 34445556665443221 233344444 666666666666543
No 385
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.06 E-value=63 Score=35.88 Aligned_cols=57 Identities=21% Similarity=0.049 Sum_probs=29.6
Q ss_pred CceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHHHHHh
Q 045600 212 DLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKS 277 (899)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 277 (899)
+..-|..|-.+..+.|++..|.+.|.+... |.+|+-.+...|+-+....+-....+.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 344566666666666666666666665442 344444444555544433333333333
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.56 E-value=1.4e+02 Score=26.72 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC---------CChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045600 489 NALLMFYSDGGQFSYAFTLFHRMST---------RSSVSWNTLISRCVQNGA-VEEAVILLQRMQKEGVELDMVTLISFL 558 (899)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 558 (899)
|+++.-....+.+.....+++.+.. .+...|.+++.+..+..- ---+..+|+-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444444444444443321 234456666666644444 223455566666655666666666666
Q ss_pred HHHhcC
Q 045600 559 PNLNKN 564 (899)
Q Consensus 559 ~~~~~~ 564 (899)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665544
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.37 E-value=6.2e+02 Score=34.00 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=40.3
Q ss_pred HHHcCCChHHHHHHHhh-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHH
Q 045600 494 FYSDGGQFSYAFTLFHR-MSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGM 571 (899)
Q Consensus 494 ~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 571 (899)
.|+.-+++|...-+... ...++ ...-|-.....|++..|...|+.+.+ ..|+ ..+++.++......+.++...
T Consensus 1429 lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q--~~p~~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1429 LYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQ--KDPDKEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred HHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhc--CCCccccchhhHHHhhhcccchhHHH
Confidence 55555555555555442 22222 12234445556777777777777766 3344 555666666666666655554
Q ss_pred HH
Q 045600 572 VI 573 (899)
Q Consensus 572 ~~ 573 (899)
..
T Consensus 1504 ~~ 1505 (2382)
T KOG0890|consen 1504 LH 1505 (2382)
T ss_pred hh
Confidence 43
No 388
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=57.03 E-value=2.6e+02 Score=29.58 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=107.8
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHcCCCCChhHHHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALEL--FKQMQLSGVRPNEITYLGVLSAC 766 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--~~~m~~~g~~p~~~t~~~l~~~~ 766 (899)
+..+...+++.|...++|+.--+.+.. ...++|+...|+.. .+-|.-..-.||..|--.++..+
T Consensus 51 ~~kv~~~i~~lc~~~~~w~~Lne~i~~--------------Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tL 116 (439)
T KOG1498|consen 51 NTKVLEEIMKLCFSAKDWDLLNEQIRL--------------LSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETL 116 (439)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHH--------------HHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Confidence 444555666666666666543332211 22355666666542 12222223345555555555433
Q ss_pred HccCCHHHHHHHHHHHHHcCCccC---cchHHHHHHHHhhcCChHHHHHHHHhCCCCC--------CHHHHHHHHHHHHh
Q 045600 767 SHAGLVEQSKMVFKSMVEHGISQK---MEHYACMVDLLGRTGHLNEAFIFVKKLPCKP--------SVSILESLLGACRI 835 (899)
Q Consensus 767 ~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--------~~~~~~~l~~~~~~ 835 (899)
- ...+-.+-.. ...-..|...+...|+.++|..++.+.+.+- .......-++.|..
T Consensus 117 r-------------~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 117 R-------------TVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred H-------------HhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 1111111111 1233457788888999999999888773221 11122333477888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCccccc
Q 045600 836 HGNVELGEIISGMLFEMDPENPG-------SYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLVG 898 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 898 (899)
.+|+-.|..+-+++.....+++. .|+.+.......+.+=++-+.|+.+.+.|-.+....-|++
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 99999999998888877655544 5666777777888898999999998887765554444544
No 389
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=56.07 E-value=56 Score=27.03 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh
Q 045600 639 AVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK 684 (899)
Q Consensus 639 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 684 (899)
...-++.+....+.|++....+.+.||.+.+++..|..+++-++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455555566777777777777777777777777777766655
No 390
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.45 E-value=39 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHH--HHHHHhcCCCC
Q 045600 825 ILESLLGACRIHGNVELGEII--SGMLFEMDPEN 856 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~~ 856 (899)
.|..+...+...|++++|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456677778888999999999 44777777654
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.73 E-value=1.6e+02 Score=26.42 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=33.6
Q ss_pred CcchHHHHHHHHHHCCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 045600 414 NLLCWNAMMSAYVRNRF-WDASLAVFRQMQFAGLNPDAVSIISVLSGCSKL 463 (899)
Q Consensus 414 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 463 (899)
+-.+|++++.+.++..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44567777777755554 334566777777777777777777777777664
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.27 E-value=1.5e+02 Score=29.86 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=52.9
Q ss_pred HHHHhHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH-----HH
Q 045600 696 LMDSYVRCGNISMARKLFGSLI----YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLS-----AC 766 (899)
Q Consensus 696 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~-----~~ 766 (899)
=|.+++..+++.++....-+-- +--+.+...-|-.|.+.+.+....++-..-....-.-+...|..++. .+
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3678888888888876553321 22334455556678888888888888777765221112234665554 44
Q ss_pred HccCCHHHHHHHH
Q 045600 767 SHAGLVEQSKMVF 779 (899)
Q Consensus 767 ~~~g~~~~A~~~~ 779 (899)
.-.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 5568888888776
No 393
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.16 E-value=2.6e+02 Score=28.40 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=43.6
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCcchHHHHHHHHHHCCChhHHHHHH
Q 045600 379 GLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPN-----RNLLCWNAMMSAYVRNRFWDASLAVF 438 (899)
Q Consensus 379 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~ 438 (899)
|-.++..+....++.+++.+++..-.++++.... .|...|..+|......|+..-...+.
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3456666777788888888888888888776543 46778888888888888876544433
No 394
>PRK10941 hypothetical protein; Provisional
Probab=52.94 E-value=94 Score=31.49 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 045600 795 ACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 795 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
..+-.+|.+.++++.|+...+.+ ...|+ +.-+.--+-.|.+-|....|..-++..++..|++|.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 33455666667777777766666 33343 3345555556666777777777777777777776665543
No 395
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.71 E-value=87 Score=27.41 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 819 CKPSVSILESLLGACRIHGNVELGEIISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 819 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
.+.|...+...+....... .+..+++.+...+ ...+..|...+..+.+.|++++|.++++.
T Consensus 62 Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 62 YKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4455554444443332222 6778888887765 55677778888888999999999999886
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.67 E-value=25 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHN 865 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 865 (899)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56778888999999888888888776654
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.53 E-value=2.6e+02 Score=28.21 Aligned_cols=104 Identities=15% Similarity=0.036 Sum_probs=49.0
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhccCCC-----h
Q 045600 396 KLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVF----RQMQFAGLNPDAVSIISVLSGCSKLDD-----V 466 (899)
Q Consensus 396 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~ 466 (899)
+.+++++|.+++.. -...+.++|+...|-++- +-+.+.+.++|......++..+...+. .
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665432 233455566655554443 333444666666555554444433321 1
Q ss_pred HHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHcCCChHHHHHHHhhc
Q 045600 467 LLGKSAHAFSLRKGI--VSNLDVLNALLMFYSDGGQFSYAFTLFHRM 511 (899)
Q Consensus 467 ~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (899)
+-..+...+. +.|- .-++.....+...|.+.|++.+|+..|-.-
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2222223333 2222 235667777778888888888887776433
No 398
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.42 E-value=51 Score=30.62 Aligned_cols=43 Identities=16% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 839 VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 839 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+++|...++++...+|+|......|-.+ .+|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 5678888999999999987776666433 345666666655543
No 399
>PRK12798 chemotaxis protein; Reviewed
Probab=52.02 E-value=3.3e+02 Score=29.27 Aligned_cols=192 Identities=14% Similarity=0.078 Sum_probs=123.5
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHccCC
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKDAF-SWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSA-CSHAGL 771 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~-~~~~g~ 771 (899)
.+.+-....-|+.+-...++..-..++.. ....-+.+|. .|+.++|.+.+..+.-.-+.+....|..|+.+ .....+
T Consensus 85 ~Aa~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 85 DAALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred hHHHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 34444445567777777777766544322 1111222333 58999999999998776667777788888884 567789
Q ss_pred HHHHHHHHHHHH--HcCCccCcchHHHHHHHHhhcCChHHHHHH----HHhCCCCCCHH-HHHHHHHHHHhhCCHHHHHH
Q 045600 772 VEQSKMVFKSMV--EHGISQKMEHYACMVDLLGRTGHLNEAFIF----VKKLPCKPSVS-ILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 772 ~~~A~~~~~~m~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 844 (899)
..+|+.+|+... .-|--........-+......|+.+++..+ +++....|=.. ++..+.....+.++-..-..
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~ 243 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR 243 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH
Confidence 999999999887 222222223444455666788998887555 45554444433 34445555556555444455
Q ss_pred HHHHHHhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 845 ISGMLFEMDPE-NPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 845 ~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
+.+.+-.++|+ ....|..++..-.-.|+.+-|.-.-++....
T Consensus 244 l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 244 LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 56666666765 4557777888888899999888777776643
No 400
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.78 E-value=25 Score=35.19 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=40.7
Q ss_pred HhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 045600 801 LGRTGHLNEAFIFVKKL-PCKPSV-SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLH 864 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 864 (899)
..+.|+.++|..+|+.. ...|+. ..+..++...-.++++-+|.+.|-+++...|.|..++.+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 34667777777777654 444543 34455555555566777777777777777777776665543
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.97 E-value=1.2e+02 Score=24.30 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=30.8
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 045600 497 DGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAV 536 (899)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 536 (899)
..|+.+.|..+++.++ +....|...+.++...|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5678888888888888 77888888888888887766554
No 402
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.78 E-value=3.8e+02 Score=28.95 Aligned_cols=290 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcC
Q 045600 217 NTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGD 296 (899)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 296 (899)
|-.+.-|+..|+..+|.+..+++ .-+...-..+-+++...+.-..+..+.-...+.+...+....+-+..++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred C--------ChhhHHHHHhhcCCCCcc---------------------------cHHHHHHHHHcCCChhHHHHHHHHHH
Q 045600 297 L--------DLSTARKLFDSLLEKNAS---------------------------VWNAMISAYTQSKKFFEAFEIFRQMI 341 (899)
Q Consensus 297 g--------~~~~A~~~f~~~~~~~~~---------------------------~~~~li~~~~~~g~~~~A~~l~~~m~ 341 (899)
| ++..|...|+.+..+.+. ....+|.-|...|+..+..+.++++-
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcC
Q ss_pred HCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHH
Q 045600 342 RAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAM 421 (899)
Q Consensus 342 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 421 (899)
....+|-...+ .+--++-+..+-.+.-.+|-.-....+.+-.-+
T Consensus 373 ~~E~~~~f~k~------------------------------------lITLAldrK~~ekEMasvllS~L~~e~fsteDv 416 (645)
T KOG0403|consen 373 LPEYNPGFLKL------------------------------------LITLALDRKNSEKEMASVLLSDLHGEVFSTEDV 416 (645)
T ss_pred CccccchHHHH------------------------------------HHHHHhccchhHHHHHHHHHHHhhcccCCHHHH
Q ss_pred HHHHHH--------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHH----------------
Q 045600 422 MSAYVR--------NRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSL---------------- 477 (899)
Q Consensus 422 i~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---------------- 477 (899)
+.++.. .=+.-.|-+.+.......+.-+...=..+=...........+.+..+...
T Consensus 417 ~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~W 496 (645)
T KOG0403|consen 417 EKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVW 496 (645)
T ss_pred HHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhhee
Q ss_pred -----HhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045600 478 -----RKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTR---SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGV 547 (899)
Q Consensus 478 -----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 547 (899)
...+..-..-...|+.-|...|++.+|...++++.-| ..+.+.+++.+.-+.|+-+..+.++++.-..|+
T Consensus 497 GgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 497 GGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 403
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.59 E-value=61 Score=31.40 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred ccccccchhhhhhhh-----hhhhhhhhhHHHHHHHHHHhhHHhhhhhcccccCCCcchHHHhhhHHhhhccHHHHhh--
Q 045600 30 ESDERYRFQCVISSK-----MACCLSSLHSEVRAFLDLYNSYLKLKIHNKNLKALPLPALALRTLEAFEITSYHIALS-- 102 (899)
Q Consensus 30 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-- 102 (899)
+..++|...|..+++ ..+|+---++.+.+ ..+++........-.++-..--+..+.-...++...|+.
T Consensus 141 S~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd-----~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 141 SNTTRFALACNQSEKIIEPIQSRCAILRYSKLSD-----QQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred cccchhhhhhcchhhhhhhHHhhhHhhhhcccCH-----HHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Q ss_pred --------------cCCCCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 045600 103 --------------SFPIIKKPCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPS 145 (899)
Q Consensus 103 --------------~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p 145 (899)
+|.-...|.+..---|++.+. .+.+++|++.+..+...|+.|
T Consensus 216 Qst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 216 QSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.75 E-value=1.5e+02 Score=25.69 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=39.6
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 816 KLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 816 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
.+...|++.....-+++|++-+|+..|+++++-+..+-++.-..|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 346789999999999999999999999999999988877655545433
No 405
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.69 E-value=2.5e+02 Score=27.69 Aligned_cols=106 Identities=24% Similarity=0.238 Sum_probs=63.9
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHH
Q 045600 723 SWSVMINGYGL--YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVD 799 (899)
Q Consensus 723 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~ 799 (899)
.|...+.++.. ++++++|++.+-.- .+.|+. -.-++.++...|+.+.|+.+++.+. ..+.. .....+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 45667777654 46777777666221 122222 2246777777899999999888753 12221 22333333
Q ss_pred HHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 045600 800 LLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHG 837 (899)
Q Consensus 800 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 837 (899)
. ...+.+.||+.+.+.....-....+..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 667889999988888744333456777777766544
No 406
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=47.12 E-value=69 Score=32.03 Aligned_cols=59 Identities=24% Similarity=0.206 Sum_probs=49.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 827 ESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 827 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+-..+...++.+.|....++.+.++|++|.-..-.|.+|.+.|-+.-|++-++-..+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34446677888999999999999999999998888899999999998888888887554
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.97 E-value=42 Score=22.87 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=18.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAG 650 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g 650 (899)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777888888888888877654
No 408
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.49 E-value=3e+02 Score=27.10 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHHHhH--hcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHc
Q 045600 693 SNALMDSYV--RCGNISMARKLFGSLI-YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSH 768 (899)
Q Consensus 693 ~~~li~~~~--~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~ 768 (899)
|...++++. ..+++++|.+.+..-. .|+- -.-++.++...|+.+.|+.+++.+.- .+ +......++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HH
Confidence 345555554 3466777777764432 1221 12366667777888888887776432 11 12222333333 55
Q ss_pred cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKP 821 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 821 (899)
.+.+.+|..+-+...+.. ....+..++..+.....-......+-.++..+
T Consensus 153 ~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~ 202 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECARSGRLDELLSLPLDE 202 (226)
T ss_pred cCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCCh
Confidence 678888877766544211 12455556665554433223333333444333
No 409
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.48 E-value=2.6e+02 Score=29.78 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhH--------HHHHHHHHHccCCHHHHHHHHHHHH-HcCCccCc----chHHHHHHH
Q 045600 734 YGDGEAALELFKQMQLSGVRPNEIT--------YLGVLSACSHAGLVEQSKMVFKSMV-EHGISQKM----EHYACMVDL 800 (899)
Q Consensus 734 ~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~----~~~~~l~~~ 800 (899)
.+++++|.++-+.....-..-|..| |-.+-.++...|+.......+.... ..-+.-|. ...+.|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 3556666655554443322223333 3333334556677666666666554 22233232 455667777
Q ss_pred HhhcCChHHHHHHHHhCCCCC--CHHHH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 801 LGRTGHLNEAFIFVKKLPCKP--SVSIL----ESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~~~~p--~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
|...+.++.|..++.+...+. +..-| .-++..-..++++..|.+.+-+++.+.|+
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 777888888888888773221 11112 22233445677888888888888888887
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.95 E-value=1e+02 Score=25.76 Aligned_cols=79 Identities=19% Similarity=0.115 Sum_probs=50.5
Q ss_pred ChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045600 162 DLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILT 241 (899)
Q Consensus 162 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (899)
..++|..|.+.....+- ....|--.-+..+.+.|++++|...=...+.||...|-+|-. -+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666655543 333344444556778999999966556677899999977754 478888888888888866
Q ss_pred CC
Q 045600 242 VG 243 (899)
Q Consensus 242 ~g 243 (899)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 55
No 411
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.75 E-value=4.5e+02 Score=28.99 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=49.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHh---hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhh
Q 045600 762 VLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLG---RTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIH 836 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 836 (899)
++..+...|-..+|...+..+.... +|+...|..+|..-. .+| ..-+..+++.+ ..-.|+..|..++..-..+
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 3444455555555666555555321 233344544444321 222 55556666665 2336777777777777778
Q ss_pred CCHHHHHHHHHHHHh
Q 045600 837 GNVELGEIISGMLFE 851 (899)
Q Consensus 837 g~~~~a~~~~~~~~~ 851 (899)
|..+.+-.++.++.+
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 887777777766664
No 412
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.66 E-value=44 Score=24.83 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=15.0
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 755 NEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 755 ~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
|-.-...++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344445555566666666666555554
No 413
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=45.41 E-value=91 Score=27.90 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=45.3
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 045600 807 LNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 807 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~e 875 (899)
.+.|.++++-|+ ...............|++..|.++.+.++..+|+|..+-...+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 344555555553 122333444556789999999999999999999999999999999988775443
No 414
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.38 E-value=5.5e+02 Score=29.88 Aligned_cols=84 Identities=12% Similarity=-0.078 Sum_probs=47.3
Q ss_pred HHhhcCChHHHHHHHHhC----CCCCC-------HHHHHHHHHHHHhhCCHHHHHHHHH--------HHHhcCCCCch--
Q 045600 800 LLGRTGHLNEAFIFVKKL----PCKPS-------VSILESLLGACRIHGNVELGEIISG--------MLFEMDPENPG-- 858 (899)
Q Consensus 800 ~~~~~g~~~~A~~~~~~~----~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~p~~~~-- 858 (899)
..+-.|++..|...++.+ ...|+ +......+-.+...|+.+.|+..|. .+....+.+.-
T Consensus 370 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~i 449 (608)
T PF10345_consen 370 CNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYI 449 (608)
T ss_pred HHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHH
Confidence 345577888888887766 11222 2223333344567799999999997 44444444322
Q ss_pred -hHHHHHHHHHhcCChHH----HHHHHHHH
Q 045600 859 -SYVMLHNIYASAGRWED----AYRVRSCM 883 (899)
Q Consensus 859 -~~~~l~~~y~~~g~~~e----A~~~~~~~ 883 (899)
+..++..++...+.-.+ +.++++.+
T Consensus 450 la~LNl~~I~~~~~~~~~~~~~~~~l~~~i 479 (608)
T PF10345_consen 450 LAALNLAIILQYESSRDDSESELNELLEQI 479 (608)
T ss_pred HHHHHHHHHhHhhcccchhhhHHHHHHHhc
Confidence 23445666665554333 55555554
No 415
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.34 E-value=3.4e+02 Score=29.01 Aligned_cols=55 Identities=9% Similarity=-0.188 Sum_probs=32.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH----HHHHHHHHH--ccCCHHHHHHHHHH
Q 045600 727 MINGYGLYGDGEAALELFKQMQLSGVRPNEIT----YLGVLSACS--HAGLVEQSKMVFKS 781 (899)
Q Consensus 727 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l~~~~~--~~g~~~~A~~~~~~ 781 (899)
.+..+.+.+++..|.++|+++.+..+.|+... |..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33456677888888888888887655554433 333333433 34456666666654
No 416
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.27 E-value=4.9e+02 Score=29.27 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=111.7
Q ss_pred hcccCCHHHHHHHHHHHHHh-CC-------CCChhHHHHHH---HHhHhcCCHHHHHHHHHhcC-------CC-------
Q 045600 665 GVLINSLNLTHSLMAFVIRK-GL-------DKHVAVSNALM---DSYVRCGNISMARKLFGSLI-------YK------- 719 (899)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~-g~-------~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~-------~~------- 719 (899)
+-+...++++...|...... .+ ..++++..+|+ +.+..+|+.+-|..++++.+ .|
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 45667788888888776654 11 23455555554 55667787777666665542 11
Q ss_pred ----------CHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHH-ccCCHHHHHHHHHHHH
Q 045600 720 ----------DAFSWS---VMINGYGLYGDGEAALELFKQMQLSGVRP--NEITYLGVLSACS-HAGLVEQSKMVFKSMV 783 (899)
Q Consensus 720 ----------~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~~~~-~~g~~~~A~~~~~~m~ 783 (899)
|-..|- ..+..+.+.|-+..|.++.+-+.+ +.| |+.....+|..|+ ++.++.-.+++++...
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls--Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS--LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222222 234556677788888887777777 444 4556666677554 6777777777777665
Q ss_pred Hc---CCccCcchHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-CC
Q 045600 784 EH---GISQKMEHYACMVDLLGRTGH---LNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMD-PE 855 (899)
Q Consensus 784 ~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~ 855 (899)
.. ..-|+...=..++..|.+... -+.|...+.++ ..-| ..+..|+..+....+ .+....+..-..- ..
T Consensus 406 ~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P--~vl~eLld~~~l~~d--a~~~~~k~~~~~a~~~ 481 (665)
T KOG2422|consen 406 NMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP--LVLSELLDELLLGDD--ALTKDLKFDGSSAENS 481 (665)
T ss_pred hhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc--HHHHHHHHhccCCch--hhhhhhcccccccccc
Confidence 22 223333322234444444333 23344444443 2222 233444444433222 1111111111111 12
Q ss_pred CchhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 045600 856 NPGSYVMLHNIYASAG----RWEDAYRVRSCMK 884 (899)
Q Consensus 856 ~~~~~~~l~~~y~~~g----~~~eA~~~~~~~~ 884 (899)
...++..+..+|..-. +..++...++...
T Consensus 482 e~pal~~lv~lY~~r~~~vWk~P~~ls~l~~~~ 514 (665)
T KOG2422|consen 482 ELPALMLLVKLYANRNEEVWKLPDVLSFLESAY 514 (665)
T ss_pred cchHHHHHHHHHHhhhhHhhcChHHHHHHHHHH
Confidence 3558888888888654 3445555555443
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.15 E-value=28 Score=30.37 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=28.3
Q ss_pred hhhHHH---HHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHh
Q 045600 112 VFLQNL---MIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKAC 157 (899)
Q Consensus 112 ~~~~n~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~ 157 (899)
++.|-. .+|+|. .-.+|-.+|.+|+.+|-+|| .++.|+.++
T Consensus 95 v~aWvNDe~tlR~yg---sk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 95 VYAWVNDEQTLRAYG---SKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred EEEEeCCCcchhhhc---cCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345533 455554 44678889999999998888 467777665
No 418
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.14 E-value=3.1e+02 Score=27.24 Aligned_cols=161 Identities=14% Similarity=0.026 Sum_probs=75.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-ccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhc-
Q 045600 727 MINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACS-HAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRT- 804 (899)
Q Consensus 727 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 804 (899)
++...-..|++++..+.++++.+.+...+..--+.|..+|- .-|....++.++..+.+..-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Confidence 45566677788888888888877665556655555555553 2345555666666555211111112222333333211
Q ss_pred -----CChHHHHHHHHhC--CC--CCCHHH-HHH-HHHHH---Hh--hC-----CHHHHHHHHHHHHhc-----CCCCch
Q 045600 805 -----GHLNEAFIFVKKL--PC--KPSVSI-LES-LLGAC---RI--HG-----NVELGEIISGMLFEM-----DPENPG 858 (899)
Q Consensus 805 -----g~~~~A~~~~~~~--~~--~p~~~~-~~~-l~~~~---~~--~g-----~~~~a~~~~~~~~~~-----~p~~~~ 858 (899)
.--.+.+.++++. +. .+.... |.- -+..| .. .| -.+.|...|+.+.+. .|.+|.
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Confidence 1122344444443 11 111111 111 11111 11 11 135566666666553 455655
Q ss_pred hH----HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 859 SY----VMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 859 ~~----~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+ +.-.-.|.-.|+.++|.++-+...+..
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 33 222233456899999988877765544
No 419
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.85 E-value=1.8e+02 Score=24.47 Aligned_cols=54 Identities=19% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcC
Q 045600 390 LLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAG 445 (899)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (899)
-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++..+|
T Consensus 46 r~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 46 RLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455667888888865555566688888776644 46777777777777776554
No 420
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.60 E-value=33 Score=32.98 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=29.5
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 802 GRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 802 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
.+.|+.+.|.+++.+. ...|+ ...|--+....-+.|+.+.|.+.++++++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555444 33332 2345555555556666666666666666666554
No 421
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.26 E-value=1.7e+02 Score=25.61 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 818 PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 818 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
..+.|+..+..-+......++ ...+++.+.... ...+..|...+..+...|++.+|.++|+.
T Consensus 61 ~YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 61 RYKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred hhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345566554444433333344 455677776655 44566777788888899999999999864
No 422
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.21 E-value=94 Score=31.11 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=51.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCHHHHH-HHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-------PCKPSVSILE-SLLGACRIHGNVELGEIISGMLFEMDPE--NPGSY 860 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 860 (899)
...+..+.+-|++.++.+.+.++..+. +.+-|...-. -++-.|....-+++.++..+.+.+..-+ ...-|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 466777888899999998888887654 3333332211 2222233333456666777777777654 11222
Q ss_pred HH-HHHHHHhcCChHHHHHHHHHH
Q 045600 861 VM-LHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 861 ~~-l~~~y~~~g~~~eA~~~~~~~ 883 (899)
-. -|.-...-.++.+|-.++...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11 122233445677777766654
No 423
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=3.5e+02 Score=27.10 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 890 (899)
.++.+.++..+..|-.++.+.-|+....+.+++-+.+-.+|.+.++..
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN 180 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 344444444444444444444444444444444444444444444433
No 424
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.98 E-value=2.6e+02 Score=28.76 Aligned_cols=90 Identities=18% Similarity=0.070 Sum_probs=53.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCC-----Cch
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-------PCKPSVSILESLLGA-CRIHGNVELGEIISGMLFEMDPE-----NPG 858 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~-----~~~ 858 (899)
..+.....-|++.|+.+.|++.+.+. +.+-|...+..-++. |..+.-+.+.++..+.+.+..-+ .-.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 56667888899999999999988754 555666555443333 33344455555556666666543 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
+|..+ -...-.++.+|-.+|-..
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHH
Confidence 22222 222445777777776553
No 425
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.92 E-value=4.5e+02 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=27.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHH-ccCCHHHHHHHHHHHH
Q 045600 728 INGYGLYGDGEAALELFKQMQLSGVRP--NEITYLGVLSACS-HAGLVEQSKMVFKSMV 783 (899)
Q Consensus 728 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~~~~-~~g~~~~A~~~~~~m~ 783 (899)
+..+.+.|-+..|+++.+-+.. +.| |.......|..|+ ++++++--+++++...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls--Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS--LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh--cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3455556666666666666655 333 3333444444333 5555555555555443
No 426
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.78 E-value=26 Score=37.70 Aligned_cols=93 Identities=14% Similarity=-0.010 Sum_probs=78.3
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 045600 796 CMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESL-LGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRW 873 (899)
Q Consensus 796 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 873 (899)
.-++-+...+.++.|..++.++ ...|+...+... ..++.+.+++..|..-+.++++++|.....|+.-+.+..+.+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 3456677889999999999887 777876654433 36778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 045600 874 EDAYRVRSCMKRSRL 888 (899)
Q Consensus 874 ~eA~~~~~~~~~~~~ 888 (899)
.+|+..|+......+
T Consensus 89 ~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAP 103 (476)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999998765433
No 427
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.67 E-value=2.6e+02 Score=28.97 Aligned_cols=90 Identities=10% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCChhHHHHHHH--HHHccCCHHHHHHHHHHHHH-----cCCccCc-
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLS---GVRPNEITYLGVLS--ACSHAGLVEQSKMVFKSMVE-----HGISQKM- 791 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~l~~--~~~~~g~~~~A~~~~~~m~~-----~~~~p~~- 791 (899)
....++....+.++.++|++.++++.+. --.|+.+.|..... .+...||..++.+++++... .+++|+.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Q ss_pred chHHHHHHHHhhc-CChHHHHH
Q 045600 792 EHYACMVDLLGRT-GHLNEAFI 812 (899)
Q Consensus 792 ~~~~~l~~~~~~~-g~~~~A~~ 812 (899)
..|..+..-|.+. |++.....
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
No 428
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.45 E-value=1.2e+02 Score=32.78 Aligned_cols=56 Identities=18% Similarity=0.095 Sum_probs=38.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHh-------c-CCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFE-------M-DPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~-------~-~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
|++...--||+..|+++++.+-- . .+=+..+++++|-+|...+|+.+|++.|....
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666665544321 1 12367789999999999999999999998653
No 429
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.22 E-value=2.3e+02 Score=24.36 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHH
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG----SYVMLHNIYA 868 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~ 868 (899)
.+..|..++...|++++++.-.++ |..++++-=+++.+... +.+..+.++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~-------------------------aL~YFNRRGEL~qdeGklWIaaVfsra~Al~ 111 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADR-------------------------ALRYFNRRGELHQDEGKLWIAAVFSRAVALE 111 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH-------------------------HHHHHHHH--TTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH-------------------------HHHHHhhccccccccchhHHHHHHHHHHHHH
Confidence 444577777888888877654443 23333333334433322 3456677788
Q ss_pred hcCChHHHHHHHHHHH
Q 045600 869 SAGRWEDAYRVRSCMK 884 (899)
Q Consensus 869 ~~g~~~eA~~~~~~~~ 884 (899)
..|+.+||++.|+...
T Consensus 112 ~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 112 GLGRKEEALKEFRMAG 127 (144)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHH
Confidence 8899999998887543
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.01 E-value=42 Score=33.99 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=34.6
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 045600 316 VWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSII 356 (899)
Q Consensus 316 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 356 (899)
-||..|....+.|++++|+.|+++.++.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47899999999999999999999999999876666665443
No 431
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.94 E-value=1.7e+02 Score=24.80 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.8
Q ss_pred eeHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045600 214 VSCNTLMAGYSFNGLDQEALETFRRILT 241 (899)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (899)
.-|..|+.-|-..|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999876
No 432
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.74 E-value=1.3e+02 Score=24.63 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 045600 775 SKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILE 827 (899)
Q Consensus 775 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 827 (899)
-.+.++++...+....+.....|.-.|.+.|+-+.|++-|+.- ..-|.+..+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 3445555554455555566666777777888888777777654 3445554443
No 433
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.73 E-value=3.6e+02 Score=26.29 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=36.8
Q ss_pred chHHHHHHHHhhcCChHH-------HHHHHHhC---CC---CC-C-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 045600 792 EHYACMVDLLGRTGHLNE-------AFIFVKKL---PC---KP-S-VSILESLLGACRIHGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~-------A~~~~~~~---~~---~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 854 (899)
..+-.+++.|...|+.+. |.+.+++. .. .+ + ......++....+.|+.++|.+.+.+++...-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 444556677766666443 44444433 11 11 1 22344455666788999999999888887653
No 434
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.01 E-value=8.3e+02 Score=30.12 Aligned_cols=255 Identities=11% Similarity=-0.038 Sum_probs=134.1
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCC
Q 045600 303 RKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGN 382 (899)
Q Consensus 303 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 382 (899)
..+...+..+|...=...+..+.+.+.. ++...+..+.+ .+|...-...+.++...+........+..+.+ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 3444455566666556666666666543 34444444443 23333333444444443322112222323332 25
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 045600 383 QPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSK 462 (899)
Q Consensus 383 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 462 (899)
|+.+....++.+...+.-+ ...+...+..+|...-...+.++.+.+..+.. ..... .++...=.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHhc---CCCHHHHHHHHHHHHH
Confidence 6666666666666543221 22344555566666666666666665544321 12221 3455554555555555
Q ss_pred CCChHH-HHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHH-HHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045600 463 LDDVLL-GKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAF-TLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQ 540 (899)
Q Consensus 463 ~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 540 (899)
.+..+. +...+..+. -.++..+-.+.+..+.+.|..+.+. .+...+..++...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll---~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALT---GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHh---cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 554332 222233322 2456778888888888888765543 34444555666666667777777765 44555655
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 045600 541 RMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIK 579 (899)
Q Consensus 541 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 579 (899)
.+.+ .|+...=...+.++.+......+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5553 46666666667777765444456666665555
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.31 E-value=1.5e+02 Score=25.16 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHH
Q 045600 416 LCWNAMMSAYVRNRFWDASLAVFRQMQF 443 (899)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (899)
.-|..++.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999877
No 436
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=37.91 E-value=12 Score=23.53 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=11.0
Q ss_pred CCccCCCcccccC
Q 045600 887 RLKKVPGFSLVGD 899 (899)
Q Consensus 887 ~~~~~~~~~~~~~ 899 (899)
|.+.+|..||.|+
T Consensus 10 ~~~~dp~vswle~ 22 (43)
T PF08195_consen 10 SYDMDPDVSWLEV 22 (43)
T ss_pred cccCCCCccHHHh
Confidence 6778999999985
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.72 E-value=1.2e+02 Score=21.02 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=21.1
Q ss_pred HHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045600 425 YVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLS 458 (899)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 458 (899)
..+.|-..++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666667777777766666666555543
No 438
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.55 E-value=4.3e+02 Score=26.36 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChhhh
Q 045600 566 NIKQGMVIHGYAIKTGCVAD---VTFLNALITMYCNCGSTNDG 605 (899)
Q Consensus 566 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a 605 (899)
.+++|+.-|....+..-... ......++..+.+.+++++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eM 84 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEM 84 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHH
Confidence 44555555555544321111 22223344445555555544
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.53 E-value=4.1e+02 Score=26.14 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=53.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCC-CChh--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChH
Q 045600 732 GLYGDGEAALELFKQMQLSGVR-PNEI--TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLN 808 (899)
Q Consensus 732 ~~~g~~~~A~~~~~~m~~~g~~-p~~~--t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 808 (899)
...|+++.|+++.+-+.+.|+. |+.. ++.+++. ++....-....+.|-..++.....+...-...
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~---- 161 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFLRVFLDLTTEW---- 161 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC----
Confidence 4568889999999888888854 5432 3333321 22222222223345433333222211111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHhcCCC
Q 045600 809 EAFIFVKKLPCKPSVSILESLLGACR---------IHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 809 ~A~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~p~ 855 (899)
.|+-......+...+..+. ..++...|...++++.+++|.
T Consensus 162 -------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 -------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred -------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 1111112223444445452 345678899999999999986
No 440
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.68 E-value=8.1e+02 Score=29.31 Aligned_cols=213 Identities=15% Similarity=0.010 Sum_probs=108.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCC----hh---HHHHHH-HHhHhcCCHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 045600 667 LINSLNLTHSLMAFVIRKGLDKH----VA---VSNALM-DSYVRCGNISMARKLFGSLI--------YKDAFSWSVMING 730 (899)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~g~~~~----~~---~~~~li-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~ 730 (899)
...++++|..+..++...-..|+ .. .++.+- ......|++++|.++.+... .+.+..+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 34566666666666555422211 11 122222 12234677888877776553 2245667777777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhH---HHHHH--HHHHccCCH--HHHHHHHHHHHHc-CC-cc----CcchHHHH
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRPNEIT---YLGVL--SACSHAGLV--EQSKMVFKSMVEH-GI-SQ----KMEHYACM 797 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~l~--~~~~~~g~~--~~A~~~~~~m~~~-~~-~p----~~~~~~~l 797 (899)
..-.|++++|..+.++..+..-.-|... +..+. ..+..+|.. .+....+...... .. .| -..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 8888999998888777665422233322 22222 246677733 3333333333311 11 11 12334444
Q ss_pred HHHHhhcCChHHHHHHHHh----C-CCCCCHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH-----HH
Q 045600 798 VDLLGRTGHLNEAFIFVKK----L-PCKPSVS----ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYV-----ML 863 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~----~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-----~l 863 (899)
..++.+ .+.+..-... . ...|.+. .+..++......||.++|....+.+..+..+.....+ .+
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444444 3333222211 1 1222221 1235667778899999998888888776543311111 12
Q ss_pred HH--HHHhcCChHHHHHHHHH
Q 045600 864 HN--IYASAGRWEDAYRVRSC 882 (899)
Q Consensus 864 ~~--~y~~~g~~~eA~~~~~~ 882 (899)
+. ....+|+..+|...+.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 22357888888877766
No 441
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=36.67 E-value=3e+02 Score=27.76 Aligned_cols=84 Identities=7% Similarity=-0.034 Sum_probs=47.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHH-----HHHH
Q 045600 763 LSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL---PCKPSVSILESLL-----GACR 834 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~-----~~~~ 834 (899)
|++++..++|.+++...-+--+..-+..+.....-|-.|.+.|....+.++...- +.+.+...|.+++ +.+.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5577777888777655444332222223455666677777888777777665554 2222222344444 3344
Q ss_pred hhCCHHHHHHHH
Q 045600 835 IHGNVELGEIIS 846 (899)
Q Consensus 835 ~~g~~~~a~~~~ 846 (899)
=.|..++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 467777777765
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.22 E-value=2.3e+02 Score=24.80 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHH
Q 045600 774 QSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVK 815 (899)
Q Consensus 774 ~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 815 (899)
.+.++|+.|..+|+.-.. ..|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544444433 455555555555555555555554
No 443
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.07 E-value=7.3e+02 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 045600 384 PSVLTALLSMYAKLGNIDSAKFLFDQI 410 (899)
Q Consensus 384 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 410 (899)
+.-|. .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 34444 556666667777777766443
No 444
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.07 E-value=2.8e+02 Score=31.88 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 045600 502 SYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAI 578 (899)
Q Consensus 502 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 578 (899)
.....++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-.+-+ ...-|...+.-+.+.|+......+...+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445555555666667777888888888888888877655322 23446666666677777666555554444
No 445
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.97 E-value=1.2e+02 Score=24.97 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=20.0
Q ss_pred HHHHHHhcC-CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 845 ISGMLFEMD-PENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 845 ~~~~~~~~~-p~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
.++++...+ +--|..+.+|+-+|.+.|+.+.|.+-|+.
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 344444333 23355555666666666666666655554
No 446
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.74 E-value=1.4e+02 Score=28.51 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045600 718 YKDAFSWSVMINGYGLYGDGEAALELFKQMQL 749 (899)
Q Consensus 718 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 749 (899)
.|++..|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555566666666666666666666666655
No 447
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.53 E-value=5.2e+02 Score=26.89 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHH------ccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHH
Q 045600 737 GEAALELFKQMQLSGVRPNEITYLGVLSACS------HAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNE 809 (899)
Q Consensus 737 ~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~------~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 809 (899)
++++..++++...++. |-.......|.++- ..-+|.....+|+.+.... |++ .+.|.-+ ++....-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHH-HHHHhhhHHh
Confidence 4677888888877764 77777777776542 2346888888888888544 444 4444333 3333334566
Q ss_pred HHHHHHhCCCCCCHHH----HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 045600 810 AFIFVKKLPCKPSVSI----LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 810 A~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
++..++.+.-.|.... +..-...+.+-|..++|...|++++.+.++....-+.
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777777744433222 2333456778899999999999999988876554443
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.19 E-value=2.3e+02 Score=30.49 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=39.3
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCcc--hHHHHHHHHh--hcCChHHHHHHHHhC
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKME--HYACMVDLLG--RTGHLNEAFIFVKKL 817 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~ 817 (899)
.+...+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 355789999999999999976 555554 4555666664 466788999999886
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.15 E-value=1.4e+02 Score=20.74 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=20.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045600 526 CVQNGAVEEAVILLQRMQKEGVELDMVTLISFL 558 (899)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 558 (899)
..+.|-..++..++++|.+.|+..+...|..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 345566666666666666666666666555444
No 450
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.25 E-value=94 Score=20.42 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
.+|..||.+-...++|++|++-|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999988887764
No 451
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.48 E-value=4.8e+02 Score=25.69 Aligned_cols=21 Identities=0% Similarity=0.151 Sum_probs=12.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCc
Q 045600 768 HAGLVEQSKMVFKSMVEHGIS 788 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~ 788 (899)
..+++.+|..+|+++....+.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456666777777766644433
No 452
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.25 E-value=4.3e+02 Score=25.05 Aligned_cols=56 Identities=9% Similarity=0.206 Sum_probs=33.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCC--------------ccCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 762 VLSACSHAGLVEQSKMVFKSMVEHGI--------------SQKMEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m~~~~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
++..|-+.-+|.++.++++.|.+..+ .+.-...+.-+..+.+.|..|.|+.++++-
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 33345555566666666666553322 222345556667777888888888777765
No 453
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.18 E-value=1.3e+02 Score=28.64 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 045600 818 PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 818 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 854 (899)
...|++..+..++..+...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556777677667777777777777777777777766
No 454
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.17 E-value=14 Score=37.84 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=56.8
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCccc
Q 045600 833 CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSL 896 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 896 (899)
....|.++.|+..+..+++++|+....|...+.++.+.++...|++-+....+...+..-++.|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 3477889999999999999999999999999999999999999999999988877766655544
No 455
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.39 E-value=3.2e+02 Score=31.06 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 045600 521 TLISRCVQNGAVEEAVILLQRMQ 543 (899)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~m~ 543 (899)
++..+|..+|++..+.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 44445555555555554444443
No 456
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.28 E-value=7e+02 Score=27.27 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHH
Q 045600 548 ELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAII 627 (899)
Q Consensus 548 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 627 (899)
..+......++..+ .|+...+..+++.+...+...+......++ .........+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~----------------~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEAL----------------QKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHH----------------hhhhhccCCCccHHHHHH
Confidence 45555555554443 688888888777665432111111111111 100001111223344555
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 045600 628 SVYVQ---TNKAKQAVAFFTELLGAGLEPDNVTVLSIISAG 665 (899)
Q Consensus 628 ~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 665 (899)
.++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555 478999999999999999888755544444443
No 457
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.06 E-value=4.5e+02 Score=24.92 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=33.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcC-----------C----CCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMD-----------P----ENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~-----------p----~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
++..|.+.-+..++.++++.+.++. | +...+.+.-+.++.+.|..|.|+.++++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3444555555556666666555543 1 2344566677778888888888888774
No 458
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=31.73 E-value=3.1e+02 Score=23.29 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHHccCCHHHHHHHHHHHH-HcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHH
Q 045600 764 SACSHAGLVEQSKMVFKSMV-EHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELG 842 (899)
Q Consensus 764 ~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 842 (899)
..+...|+.-+|+++.++++ .+|-..+. + ..+..+|.+=. ++-.+. -.||...-. .-.+
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~--~----~lh~~QG~if~--~lA~~t-en~d~k~~y-----------Ll~s 63 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESS--W----LLHRLQGTIFY--KLAKKT-ENPDVKFRY-----------LLGS 63 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCch--H----HHHHHHhHHHH--HHHHhc-cCchHHHHH-----------HHHh
Confidence 45678888888888888888 44432222 1 11111221110 001111 133332211 1235
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
.+.+.+...+.|+.+..++.|++-+...--|+++.+--++
T Consensus 64 ve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 64 VECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6677888888898888888887776555556666555444
No 459
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.25 E-value=2.9e+02 Score=22.44 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCh-HHHHHHHHHH
Q 045600 822 SVSILESLLGACRIHGNVELGEIISGMLFEMDPE--NPGSYVMLHNIYASAGRW-EDAYRVRSCM 883 (899)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~-~eA~~~~~~~ 883 (899)
|......+...+...|+++.|...+-.+++.++. +..+-..+..++...|.- +-+.++.++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455666667777777777777777777777654 466667777777777763 3444554444
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.45 E-value=1.1e+03 Score=29.17 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=25.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCccC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 045600 759 YLGVLSACSHAGLVEQSKMVFKSMVEHGISQK----MEHYACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 759 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
|...++.+...+-.+.+.++-..+++. ..++ ..+++.+.+.....|.+-+|...+-+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 334444444555555555554444421 1111 13444455555555555555554443
No 461
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=5.6e+02 Score=25.40 Aligned_cols=69 Identities=12% Similarity=0.000 Sum_probs=41.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV-SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 861 (899)
.+-.+..++...|++-++++-..+. ...|+. ..+-.-..+....-+.++|.+-+.++++++|.-..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 3444556666677777776665554 333432 33444444445556778888888888888886544443
No 462
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=29.77 E-value=1.3e+02 Score=30.67 Aligned_cols=77 Identities=8% Similarity=-0.029 Sum_probs=50.6
Q ss_pred CccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHH-HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 787 ISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILES-LLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 787 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
...|+..|...+.-..+.|-+.+.-.++.++ ..+.+...|-. ...-+..+++++.+..++.+.+..+|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445566665555555666666666666665 33334455544 33445678888888888888888888888887654
No 463
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.58 E-value=65 Score=32.72 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=30.1
Q ss_pred eHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHH
Q 045600 215 SCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSS 253 (899)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 253 (899)
-||..|..-++.|++++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367888888899999999999999888887654444443
No 464
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=29.37 E-value=2.8e+02 Score=30.52 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHH
Q 045600 755 NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNE 809 (899)
Q Consensus 755 ~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 809 (899)
+...|...+.-|...+++++|.++.+-.. +...|..+...-.+..+..-
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~------eqTMWAtlAa~Av~~~~m~~ 620 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ------EQTMWATLAAVAVRKHQMQI 620 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc------chHHHHHHHHHHHhhccccH
Confidence 44567777777777777777777765432 33455555555555554443
No 465
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=29.27 E-value=6.3e+02 Score=25.79 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHhcCCC-CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc-------CC
Q 045600 704 GNISMARKLFGSLIYK-DAFSWSVMINGYGL----YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHA-------GL 771 (899)
Q Consensus 704 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~-------g~ 771 (899)
.+..+|.+++...... .+.....|...|.. ..+..+|.+.+++..+.|..+...+...+...|..- -+
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 3456666666655422 33344445444444 337778888888888777555422233333333322 12
Q ss_pred HHHHHHHHHHHHHcCCccCcchHHHHHHHHhh----cCChHHHHHHHHhC
Q 045600 772 VEQSKMVFKSMVEHGISQKMEHYACMVDLLGR----TGHLNEAFIFVKKL 817 (899)
Q Consensus 772 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 817 (899)
...|...+.++...+ +......+...|.. ..+.++|..++++.
T Consensus 171 ~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 171 DKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred HHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 346778888777666 33444455555543 33677888888877
No 466
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=28.85 E-value=6.5e+02 Score=25.81 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=11.7
Q ss_pred hHHHHHHHHhhcCChHHH
Q 045600 793 HYACMVDLLGRTGHLNEA 810 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A 810 (899)
+|.-|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466677777777766544
No 467
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.79 E-value=7.4e+02 Score=27.85 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=61.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcC-C-CCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 045600 694 NALMDSYVRCGNISMARKLFGSLI-Y-KDAFS---WSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSH 768 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~-~-~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 768 (899)
..++.-|.+.+++++|..++..|. . -.... .+.+.+.+.+..--++.+..++.+...=..|....-....
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~----- 486 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATV----- 486 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHH-----
Confidence 356778899999999999999987 1 12222 3333344444433333444444444322222111100000
Q ss_pred cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
.++-+ |-...-......+.|.+++++|+.+--+++ +...+.-+-......|+.+.|.
T Consensus 487 -------~ey~d--------~V~~~aRRfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 487 -------LEYRD--------PVSDLARRFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -------HHHHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 01100 001111234555667788888887766653 2233333444445566665553
No 468
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=6.6e+02 Score=25.79 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhCCCHHHH
Q 045600 723 SWSVMINGYGLYGDGEAA 740 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A 740 (899)
.|.-|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666655443
No 469
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=28.68 E-value=1.1e+02 Score=33.23 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=30.3
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 813 FVKKLPCKPSVS--ILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 813 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
+|...+..|... +++.-+..+.+.+++..|-.+.++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344455666554 46677788889999999999999999998863
No 470
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.57 E-value=8.3e+02 Score=26.95 Aligned_cols=150 Identities=15% Similarity=0.068 Sum_probs=98.8
Q ss_pred HhCCCHHHHHHHHHHHHHc-CCCCCh-------hHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCccCcc--hHHHHHHH
Q 045600 732 GLYGDGEAALELFKQMQLS-GVRPNE-------ITYLGVLS-ACSHAGLVEQSKMVFKSMVEHGISQKME--HYACMVDL 800 (899)
Q Consensus 732 ~~~g~~~~A~~~~~~m~~~-g~~p~~-------~t~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~ 800 (899)
.-.|++.+|++-..+|.+- .-.|.. .....++. .++.-|.++.|...|....+.--..|.. .-..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 4579999999999888873 223431 12333444 3457789999999888877433333332 22346778
Q ss_pred HhhcCChHHHHHHHHhCCCC---CCH-H-----HHHHHHHHHHhhCCHHHHHHHHHHHHhcC-CC-----CchhHHHHHH
Q 045600 801 LGRTGHLNEAFIFVKKLPCK---PSV-S-----ILESLLGACRIHGNVELGEIISGMLFEMD-PE-----NPGSYVMLHN 865 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~~~~---p~~-~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~-----~~~~~~~l~~ 865 (899)
|.+.|+.++-.++++..+-. +-. . .+...+-.....|++.+|..+..+.++.. .. ..-.+..|++
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 89999988888888887311 111 1 12222223467899999999988888765 11 2446788999
Q ss_pred HHHhcCChHHHHHHHH
Q 045600 866 IYASAGRWEDAYRVRS 881 (899)
Q Consensus 866 ~y~~~g~~~eA~~~~~ 881 (899)
+....|+..|+.+...
T Consensus 494 v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHhcchHHHHhccc
Confidence 9999999999877654
No 471
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.35 E-value=66 Score=28.19 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045600 426 VRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSG 459 (899)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 459 (899)
-..|.-.+|..+|++|.+.|-+||. ++.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456677899999999999999984 4555544
No 472
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.84 E-value=98 Score=31.26 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=37.9
Q ss_pred HHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 045600 766 CSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV 823 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 823 (899)
..+.|+.++|..+|+... .+.|+. ..+..+.......+++-+|-..+-+. .+.|..
T Consensus 126 ~~~~Gk~ekA~~lfeHAl--alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL--ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHhccchHHHHHHHHHHH--hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 458899999999999887 344554 55555555555566777777776665 455543
No 473
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.83 E-value=1.2e+02 Score=22.53 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQL 749 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~ 749 (899)
.-..|.+|...|++++|.+.++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33567788888888888888877765
No 474
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.72 E-value=7.9e+02 Score=26.43 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhcCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045600 487 VLNALLMFYSDGGQFSYAFTLFHRMST------RSSVSWNTLISRCVQNGAVEEAVILLQRMQK 544 (899)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 544 (899)
.+.-+.+.|..+|+++.|.+.+.+... ..+..|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677889999999999999988553 2345666777777777888877777766655
No 475
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.17 E-value=1.4e+02 Score=23.51 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=25.0
Q ss_pred ccCCHHHHHHHHHHHH---HcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 768 HAGLVEQSKMVFKSMV---EHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
..|+.++|+..|+..+ ..|+..+.. .......|++|.++.++|
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km 65 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKM 65 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHH
Confidence 4567777777776544 334433322 233445677777777776
No 476
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.04 E-value=6.3e+02 Score=26.35 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhh------cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHH
Q 045600 770 GLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGR------TGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELG 842 (899)
Q Consensus 770 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a 842 (899)
+..+++..++++....+. |.++.....|.++.. .-+|.....+|+.+ ...|++..-.+-.-+..+..-.+.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhH
Confidence 345778888888886664 777777766665532 23677777777766 4456654322222233344446667
Q ss_pred HHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 843 EIISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 843 ~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+.+.+.+.. ......+...+..+.+.|+.+||.+.|+....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 77777666552 22334556688899999999999999998764
No 477
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.60 E-value=7.6e+02 Score=25.85 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHhCC---C---------HHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045600 719 KDAFSWSVMINGYGLYG---D---------GEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 719 ~~~~~~~~li~~~~~~g---~---------~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~ 785 (899)
.|+.+|-.++.---..- . .+.-+.++++..+. .| +......++..+.+..+.++..+-++++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 37888988886433221 1 45567888888885 56 4456777888888888999999999999854
Q ss_pred CCccCcchHHHHHHHHhh---cCChHHHHHHHHhC-------CCCC----------CHHH---HHHHHHHHHhhCCHHHH
Q 045600 786 GISQKMEHYACMVDLLGR---TGHLNEAFIFVKKL-------PCKP----------SVSI---LESLLGACRIHGNVELG 842 (899)
Q Consensus 786 ~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-------~~~p----------~~~~---~~~l~~~~~~~g~~~~a 842 (899)
. +-+...|...++.... .-.+++....+.+. .... +... +..+...+...|-.+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3 1234666666655443 23466666665554 2221 1112 22333445788999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 890 (899)
..+++.+++.+--.|.....-. ..+.++.|+..=+.++.+
T Consensus 174 va~~Qa~lE~n~~~P~~~~~~~--------~~~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 174 VALWQALLEFNFFRPESLSSSS--------FSERLESFEEFWESEVPR 213 (321)
T ss_pred HHHHHHHHHHHcCCcccccccc--------HHHHHHHHHHHhCcCCCC
Confidence 9999999998865555443321 115555666555554433
No 478
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.36 E-value=6e+02 Score=26.11 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh----------cCCHHHH
Q 045600 640 VAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVR----------CGNISMA 709 (899)
Q Consensus 640 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------~g~~~~A 709 (899)
.++++.|.+.++.|.-..+.-+.-.+.+.=.+.....+|+.+...... +..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777888888888777776666666777777777788777765222 3444443332 3555555
Q ss_pred HHHHHhcCCCCHH
Q 045600 710 RKLFGSLIYKDAF 722 (899)
Q Consensus 710 ~~~~~~~~~~~~~ 722 (899)
.++++.-+..|+.
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 5555555444443
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.15 E-value=2.6e+02 Score=25.19 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC
Q 045600 641 AFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCG 704 (899)
Q Consensus 641 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 704 (899)
++.+.+++.|++++..-. .++..+...+..-.|.++++.+.+.++..+..+.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
No 480
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.11 E-value=3.3e+02 Score=21.47 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=9.0
Q ss_pred HHHHHHhcCChHHHHHHhcc
Q 045600 188 LVDFYAKKGEMLTARLLFDQ 207 (899)
Q Consensus 188 l~~~y~~~g~~~~A~~~f~~ 207 (899)
.+...+..|+.+-+..+++.
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 33344444554444444443
No 481
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.94 E-value=1.8e+02 Score=31.60 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCcccc
Q 045600 839 VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLV 897 (899)
Q Consensus 839 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 897 (899)
+++-++.++.+.+... +.....-++.|.+++++++|.+.+++-.+.|...--|++.|
T Consensus 70 ~~e~i~lL~~l~~~g~--ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~V 126 (480)
T TIGR01503 70 LDEHIELLRTLQEEGG--ADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGV 126 (480)
T ss_pred HHHHHHHHHHHHHccC--CCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcc
Confidence 5555666666666542 22555667889999999999999998877776665665544
No 482
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.70 E-value=7e+02 Score=25.15 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 045600 688 KHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACS 767 (899)
Q Consensus 688 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 767 (899)
-++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36777788889999999999998888655444433332233222222222222 111111122 355
Q ss_pred ccCCHHHHHHHHHHHHH
Q 045600 768 HAGLVEQSKMVFKSMVE 784 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~ 784 (899)
..++...|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 66778888877776663
No 483
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.25 E-value=2.7e+02 Score=31.52 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
.+.+.-.|.+-.+.|.|.++++.+-+-+|.++-.-.....+....|+-++|+....+....
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 4445555566666777777777777777776666666666777777777777776666543
No 484
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.23 E-value=2.5e+02 Score=22.22 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=7.9
Q ss_pred HHhcCChHHHHHHhc
Q 045600 192 YAKKGEMLTARLLFD 206 (899)
Q Consensus 192 y~~~g~~~~A~~~f~ 206 (899)
.++.|+++-...+++
T Consensus 4 A~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE 18 (89)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344555555555555
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.95 E-value=4.4e+02 Score=24.79 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCC--ChhHHHHHHH-----HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC
Q 045600 737 GEAALELFKQMQLSGVRP--NEITYLGVLS-----ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH 806 (899)
Q Consensus 737 ~~~A~~~~~~m~~~g~~p--~~~t~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 806 (899)
.+.|+.+|+.+.+.--.| -......++. .|.+.|.+++|.+++++.. + .|+.......+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~--~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF--S-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh--c-CCCchhHHHHHHHHHHccc
No 486
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.66 E-value=9.4e+02 Score=26.27 Aligned_cols=119 Identities=16% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 045600 652 EPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMI 728 (899)
Q Consensus 652 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 728 (899)
..+......++..+ .|+...+..+++.....+...+ .+...+++.... .++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555555443 6788888777776654321112 122222222211 12222233344
Q ss_pred HHHHh---CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCc
Q 045600 729 NGYGL---YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGL-----VEQSKMVFKSMVEHGIS 788 (899)
Q Consensus 729 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~-----~~~A~~~~~~m~~~~~~ 788 (899)
.++.+ .++.+.|+..+.+|.+.|..|....-..++.++...|. ..-|...++....-|++
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 44443 47899999999999999988886666666656555543 22333444444444543
No 487
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=24.62 E-value=87 Score=23.39 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=19.8
Q ss_pred HHhcCC-ChhhHHHHHHHHHhcC-CCCCCC
Q 045600 121 GLSNCG-LHADLLHVYIKCRLSG-CPSDDF 148 (899)
Q Consensus 121 ~~~~~g-~~~~a~~~~~~m~~~g-~~p~~~ 148 (899)
++..+| +++.|+..|..+...| ++|+.|
T Consensus 33 cLe~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 33 CLEDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 334444 7889999999988765 666655
No 488
>PRK09857 putative transposase; Provisional
Probab=24.54 E-value=4.9e+02 Score=26.84 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 045600 827 ESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 827 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 890 (899)
..++......++.++-..+.+.+.+..|+.....-+++.-+.+.|.-+++++...+|...|...
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444556676666777777777667766677788888888888888888888888877653
No 489
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=24.11 E-value=64 Score=22.87 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHhcCC-ChhhHHHHHHHHHhcC-CCCCCC
Q 045600 121 GLSNCG-LHADLLHVYIKCRLSG-CPSDDF 148 (899)
Q Consensus 121 ~~~~~g-~~~~a~~~~~~m~~~g-~~p~~~ 148 (899)
++..+| +++.|+..|..+...| ++|+.+
T Consensus 21 CL~~n~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 21 CLEENNWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp HHHHTTT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCChHhc
Confidence 344444 7888999999887776 666655
No 490
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=23.55 E-value=3.5e+02 Score=33.32 Aligned_cols=50 Identities=20% Similarity=0.052 Sum_probs=33.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
++-+-..+.|.++=.-+++++.++.|.. .-..+=...|||++|++.+.++
T Consensus 878 l~VAq~SQkDPKEYLPfL~~L~~l~~~~-----rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 878 LMVAQQSQKDPKEYLPFLQELQKLPPLY-----RRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHhccChHHHHHHHHHHHhCChhh-----eeeeHhhhhCCHHHHHHHHHhh
Confidence 3444456667777777777777776542 2333445678999999888764
No 491
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=23.07 E-value=26 Score=37.32 Aligned_cols=150 Identities=17% Similarity=0.053 Sum_probs=0.0
Q ss_pred hcCCCCCCCcHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcC----ChHHHHHHhccCC--CCCc
Q 045600 140 LSGCPSDDFTFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKG----EMLTARLLFDQIP--LADL 213 (899)
Q Consensus 140 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g----~~~~A~~~f~~~~--~~~~ 213 (899)
..|+.||.++|.+-..+--+......|++.++.++ ||..+... +.+-..- .-.+-+++|+.+. .|.+
T Consensus 408 sa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~--n~~d~k~~~~~k~q~~le~F~~I~Iedprv 480 (650)
T KOG4334|consen 408 SAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSED--NVCDGKVEEDGKQQGFLELFKKIKIEDPRV 480 (650)
T ss_pred cccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhccc--ccccccccccccchhHHHHhhcccccCchH
Q ss_pred e----------eHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCc
Q 045600 214 V----------SCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDD 283 (899)
Q Consensus 214 ~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 283 (899)
+ .|+.|..++.++-.+.+..--++.....+-........-=...-+...+...++++....+-.-+.|..
T Consensus 481 ~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~ 560 (650)
T KOG4334|consen 481 VEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHL 560 (650)
T ss_pred HHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHh
Q ss_pred chhhHHHHhhhcC
Q 045600 284 FLVPALISMYAGD 296 (899)
Q Consensus 284 ~~~~~li~~~~~~ 296 (899)
.+|.+|+.+|.+.
T Consensus 561 ~twGSlLriYGr~ 573 (650)
T KOG4334|consen 561 LTWGSLLRIYGRL 573 (650)
T ss_pred hhHHHHHHHhhhh
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.86 E-value=5.2e+02 Score=22.61 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHH
Q 045600 776 KMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVK 815 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 815 (899)
.++|..|..+|+-... ..|...+..+...|++.+|.++++
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445444444333 445555555556666666655554
No 493
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.69 E-value=3.8e+02 Score=29.01 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 725 SVMINGYGLYGDGEAALELFKQMQLS------GVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 725 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
..|++.++-.||+..|+++++.+.-. .+.+ ...+|..+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666555543211 1112 22344444555566666666666665544
No 494
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.66 E-value=2.8e+02 Score=22.60 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=11.1
Q ss_pred HHHHhhCCHHHHHHHHHHHHhc
Q 045600 831 GACRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 831 ~~~~~~g~~~~a~~~~~~~~~~ 852 (899)
......|+.++|...++.++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3344445555555555555544
No 495
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.61 E-value=2.7e+02 Score=22.26 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=27.8
Q ss_pred hcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChh
Q 045600 294 AGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFF 331 (899)
Q Consensus 294 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 331 (899)
+...+.+.|.++++.++.++..+|.+...++-..|...
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34456777888888888888888888888777766543
No 496
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.54 E-value=8.8e+02 Score=25.15 Aligned_cols=186 Identities=18% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHhHhcCC--HHHHHHHHHhc-C-CCCHHHHHHHHHHHHhCC-----CHHHHHHHHHH---------HHHcCCCCC--h
Q 045600 697 MDSYVRCGN--ISMARKLFGSL-I-YKDAFSWSVMINGYGLYG-----DGEAALELFKQ---------MQLSGVRPN--E 756 (899)
Q Consensus 697 i~~~~~~g~--~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~---------m~~~g~~p~--~ 756 (899)
+-.+++.|. +..+.+++..+ . +++...|..++..+.... ..+.....|+. +.+.|..+. .
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 124 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGE 124 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--S
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q ss_pred hHHHHHHHHH-HccCC-----HHHHHHHHHHHHHcCC----ccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 045600 757 ITYLGVLSAC-SHAGL-----VEQSKMVFKSMVEHGI----SQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSIL 826 (899)
Q Consensus 757 ~t~~~l~~~~-~~~g~-----~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 826 (899)
.....+++.. ....- .++|.+.|++....+. ..++.....+.....+.|..++-..+.+.....++...-
T Consensus 125 ~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 125 DHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh--HHHHHHHHH
Q 045600 827 ESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRW--EDAYRVRSC 882 (899)
Q Consensus 827 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~--~eA~~~~~~ 882 (899)
..++.+..-..+.+...++++.++..+.-...-...+.......+.. +-+.++++.
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 497
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.17 E-value=8.2e+02 Score=24.66 Aligned_cols=159 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCCh-----hhhhHHHHHHHHhCCCCchhhhhHHHH
Q 045600 116 NLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDL-----RIGREIHCVIFRTGYHQNLVIQTALVD 190 (899)
Q Consensus 116 n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~ 190 (899)
+.+|+.+.+.|...+|+.+.+.+...... .++...+|......... ......+..++. +-.....|-.++-
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~~l~~F--~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~--ll~~f~~~l~Ivv 161 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYRSLPYF--SHALELLLHTVLEEEADSSEDSPIPDALLPRVIS--LLQEFPEYLEIVV 161 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhccCCCc--HHHHHHHHHHHHhhcccccccccchHHHHHHHHH--HHHcCcchHHHHH
Q ss_pred HHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHH-CCCCC-----CcchHHHHHHHhhccCCh
Q 045600 191 FYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILT-VGLKP-----NVSTFSSVIPVCTRLGHF 264 (899)
Q Consensus 191 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p-----~~~t~~~ll~~~~~~g~~ 264 (899)
-|.|.=+...=..+|+....|- .|+.-+.+.|+.+.|-.++--+.. .+... +...-..++......+++
T Consensus 162 ~C~RKtE~~~W~~LF~~lg~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w 236 (258)
T PF07064_consen 162 NCARKTEVRYWPYLFDYLGSPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDW 236 (258)
T ss_pred HHHHhhHHHHHHHHHHhcCCHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccH
Q ss_pred hhhhHHHHHHHHhCCCCCc
Q 045600 265 CFGKSLHGFTIKSGYLFDD 283 (899)
Q Consensus 265 ~~a~~~~~~~~~~g~~~~~ 283 (899)
+.+.++...+...+.+-+.
T Consensus 237 ~Lc~eL~RFL~~ld~~~~~ 255 (258)
T PF07064_consen 237 DLCFELVRFLKALDPEGNT 255 (258)
T ss_pred HHHHHHHHHHHHhCcccCc
No 498
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=21.80 E-value=8.7e+02 Score=24.84 Aligned_cols=62 Identities=13% Similarity=0.288 Sum_probs=45.2
Q ss_pred CCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045600 480 GIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST-----RSSVSWNTLISRCVQNGAVEEAVILLQR 541 (899)
Q Consensus 480 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 541 (899)
+-.++..+...++..+++.+++..-.++++.... .|...|..+|......|+..-...+.++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 4566777777788888888888888887776543 3777888888888888887655544443
No 499
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.71 E-value=8.6e+02 Score=24.71 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045600 523 ISRCVQNGAVEEAVILLQRMQKEGVELDMVTL 554 (899)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 554 (899)
.+-..+.+++++|+..+.++...|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 44456788899999999999988887776553
No 500
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.61 E-value=5.5e+02 Score=22.45 Aligned_cols=58 Identities=17% Similarity=0.028 Sum_probs=42.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhhCCHHHHHHHHHHH
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSIL-ESLLGACRIHGNVELGEIISGML 849 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 849 (899)
.+..+++.++.=.|..++|.+++...+.-+....+ ..++..|....+.++-.++-++.
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56677888888888888888888888776665543 47778888887776666555443
Done!