Query 045600
Match_columns 899
No_of_seqs 746 out of 4553
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 05:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7E-38 2.4E-42 364.5 42.6 496 293-868 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-37 3.5E-42 363.1 43.8 482 394-889 63-582 (597)
3 4g26_A Pentatricopeptide repea 99.9 1.8E-26 6.3E-31 255.6 24.4 212 533-769 7-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 9.2E-24 3.1E-28 230.7 44.5 369 497-872 11-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 4.5E-27 1.5E-31 260.5 16.7 185 112-296 26-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-23 4.9E-28 229.2 42.7 358 522-888 5-370 (388)
7 1xi4_A Clathrin heavy chain; a 99.9 1.4E-17 4.7E-22 193.8 66.8 539 279-882 721-1341(1630)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-21 6.4E-26 221.3 33.8 439 416-888 7-480 (514)
9 2gw1_A Mitochondrial precursor 99.9 1.4E-20 4.8E-25 214.0 33.8 449 384-865 6-491 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-19 3.6E-24 202.9 37.3 221 668-893 156-417 (450)
11 1xi4_A Clathrin heavy chain; a 99.9 5.4E-16 1.9E-20 180.6 68.2 742 93-886 373-1309(1630)
12 3fp2_A TPR repeat-containing p 99.9 2.2E-19 7.4E-24 205.5 39.5 420 417-888 27-493 (537)
13 2y4t_A DNAJ homolog subfamily 99.9 8.1E-19 2.8E-23 195.7 35.7 364 484-876 25-444 (450)
14 3fp2_A TPR repeat-containing p 99.8 3.4E-17 1.2E-21 187.1 40.8 233 626-863 249-502 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 4.6E-17 1.6E-21 175.1 33.5 308 551-888 3-337 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 3.6E-16 1.2E-20 168.1 35.3 327 515-871 2-354 (359)
17 1b89_A Protein (clathrin heavy 99.8 2.3E-17 7.8E-22 173.2 23.5 343 95-511 17-369 (449)
18 3hym_B Cell division cycle pro 99.8 2E-16 6.7E-21 168.0 29.9 251 619-873 55-321 (330)
19 3hym_B Cell division cycle pro 99.8 2.1E-16 7.2E-21 167.8 28.9 266 618-888 20-301 (330)
20 1b89_A Protein (clathrin heavy 99.7 6.8E-17 2.3E-21 169.6 22.0 283 193-507 14-304 (449)
21 4g1t_A Interferon-induced prot 99.7 1.4E-15 4.9E-20 170.4 32.3 371 484-899 50-472 (472)
22 2xm6_A Protein corresponding t 99.7 2.6E-14 8.8E-19 160.7 40.2 352 498-870 56-453 (490)
23 2xm6_A Protein corresponding t 99.7 6.5E-14 2.2E-18 157.4 43.0 352 514-888 37-434 (490)
24 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.8E-20 157.9 26.0 242 626-880 40-288 (291)
25 1fch_A Peroxisomal targeting s 99.7 5E-16 1.7E-20 167.8 23.9 260 619-883 63-356 (368)
26 4eqf_A PEX5-related protein; a 99.7 3E-16 1E-20 169.4 20.3 259 619-882 64-352 (365)
27 2ooe_A Cleavage stimulation fa 99.7 8.2E-14 2.8E-18 158.3 41.3 412 449-888 12-494 (530)
28 3cv0_A Peroxisome targeting si 99.7 1.9E-15 6.6E-20 160.1 21.7 262 619-885 20-314 (327)
29 3mkr_A Coatomer subunit epsilo 99.7 2.7E-15 9.4E-20 155.0 21.9 247 628-888 7-266 (291)
30 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-17 5.4E-22 187.6 4.5 152 177-328 122-286 (1134)
31 4eqf_A PEX5-related protein; a 99.7 5E-15 1.7E-19 159.7 22.7 233 654-889 64-313 (365)
32 1fch_A Peroxisomal targeting s 99.7 4.4E-15 1.5E-19 160.3 21.5 256 630-888 35-316 (368)
33 2ooe_A Cleavage stimulation fa 99.6 3.9E-13 1.3E-17 152.7 36.2 376 482-888 10-456 (530)
34 2pl2_A Hypothetical conserved 99.6 2.3E-14 7.8E-19 141.3 19.9 194 687-884 2-212 (217)
35 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4E-18 140.5 23.3 220 621-887 6-237 (258)
36 3spa_A Mtrpol, DNA-directed RN 99.6 2.4E-15 8.1E-20 170.1 8.8 117 689-805 126-250 (1134)
37 3cv0_A Peroxisome targeting si 99.6 7E-13 2.4E-17 140.2 27.3 228 515-783 20-267 (327)
38 4g1t_A Interferon-induced prot 99.6 2.1E-12 7.1E-17 144.6 31.0 391 415-865 51-472 (472)
39 3uq3_A Heat shock protein STI1 99.5 3.1E-13 1E-17 137.4 21.6 239 586-866 5-256 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.7E-13 1.6E-17 137.6 21.5 240 633-880 18-269 (275)
41 2ho1_A Type 4 fimbrial biogene 99.5 1E-12 3.5E-17 133.1 22.5 198 690-889 37-241 (252)
42 1ouv_A Conserved hypothetical 99.5 4.2E-12 1.5E-16 130.3 27.4 224 619-888 5-253 (273)
43 2vq2_A PILW, putative fimbrial 99.5 2.7E-12 9.3E-17 127.2 23.4 198 689-888 7-213 (225)
44 3u4t_A TPR repeat-containing p 99.5 1.3E-12 4.5E-17 134.1 21.6 245 622-871 5-269 (272)
45 2q7f_A YRRB protein; TPR, prot 99.5 6E-13 2.1E-17 133.9 18.1 197 689-888 22-224 (243)
46 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-12 5.4E-17 124.4 19.8 167 720-889 4-173 (184)
47 2h6f_A Protein farnesyltransfe 99.5 1.9E-12 6.6E-17 138.1 20.1 230 619-888 96-350 (382)
48 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.2E-17 137.0 21.0 245 586-870 97-366 (382)
49 3u4t_A TPR repeat-containing p 99.4 4.4E-12 1.5E-16 130.1 20.9 228 657-889 5-253 (272)
50 2q7f_A YRRB protein; TPR, prot 99.4 2.9E-12 9.9E-17 128.8 18.1 214 619-871 22-241 (243)
51 2ho1_A Type 4 fimbrial biogene 99.4 2.1E-11 7.3E-16 123.3 24.3 207 620-863 37-249 (252)
52 3e4b_A ALGK; tetratricopeptide 99.4 7.9E-12 2.7E-16 138.0 22.6 252 491-750 9-280 (452)
53 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.2E-12 7.4E-17 132.6 17.0 220 665-888 15-246 (275)
54 3e4b_A ALGK; tetratricopeptide 99.4 8.5E-12 2.9E-16 137.7 21.4 340 456-817 9-384 (452)
55 2pl2_A Hypothetical conserved 99.4 1.8E-11 6.1E-16 120.4 21.4 193 619-816 4-210 (217)
56 2vq2_A PILW, putative fimbrial 99.4 3.7E-11 1.3E-15 118.9 23.6 208 619-863 7-222 (225)
57 4abn_A Tetratricopeptide repea 99.4 2.8E-12 9.5E-17 142.6 16.7 191 689-882 101-317 (474)
58 4a1s_A PINS, partner of inscut 99.4 4.5E-12 1.5E-16 139.0 17.2 262 623-886 51-372 (411)
59 3ro2_A PINS homolog, G-protein 99.4 1.4E-11 4.8E-16 130.5 20.4 263 623-887 8-333 (338)
60 3sf4_A G-protein-signaling mod 99.4 1.4E-11 4.7E-16 134.7 20.4 262 623-885 12-335 (406)
61 1ouv_A Conserved hypothetical 99.3 3.4E-10 1.2E-14 116.0 26.7 196 619-858 37-257 (273)
62 3ulq_A Response regulator aspa 99.3 9.7E-11 3.3E-15 126.8 23.5 229 626-886 109-368 (383)
63 3sf4_A G-protein-signaling mod 99.3 1.8E-11 6.1E-16 133.8 16.4 296 548-874 6-364 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.3 2.4E-11 8.3E-16 140.2 17.9 163 720-886 8-174 (723)
65 3as5_A MAMA; tetratricopeptide 99.3 4.5E-11 1.5E-15 114.1 16.6 169 724-895 11-182 (186)
66 3nf1_A KLC 1, kinesin light ch 99.3 6.3E-12 2.1E-16 131.7 11.1 238 619-886 26-307 (311)
67 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-10 4.1E-15 111.2 18.1 166 689-857 4-175 (184)
68 2ond_A Cleavage stimulation fa 99.3 4.5E-10 1.5E-14 117.2 23.2 215 637-856 33-274 (308)
69 4abn_A Tetratricopeptide repea 99.2 8.4E-11 2.9E-15 130.6 17.3 180 705-888 83-289 (474)
70 4i17_A Hypothetical protein; T 99.2 2.1E-10 7.2E-15 113.9 17.9 189 690-889 7-212 (228)
71 4e6h_A MRNA 3'-END-processing 99.2 3.7E-08 1.3E-12 112.2 38.1 216 639-857 328-575 (679)
72 3ro2_A PINS homolog, G-protein 99.2 3.5E-10 1.2E-14 119.7 19.9 275 519-855 8-335 (338)
73 4a1s_A PINS, partner of inscut 99.2 2.6E-10 8.8E-15 124.9 17.9 273 552-855 49-375 (411)
74 4i17_A Hypothetical protein; T 99.2 9.2E-10 3.2E-14 109.2 20.3 205 653-868 5-225 (228)
75 4e6h_A MRNA 3'-END-processing 99.2 1.1E-07 3.9E-12 108.2 39.8 216 673-889 327-573 (679)
76 1hz4_A MALT regulatory protein 99.2 1E-08 3.5E-13 110.4 29.7 259 627-885 21-321 (373)
77 3q15_A PSP28, response regulat 99.2 2.8E-09 9.7E-14 114.9 25.3 193 692-885 143-364 (378)
78 2ond_A Cleavage stimulation fa 99.2 4.3E-09 1.5E-13 109.8 24.9 215 672-890 33-274 (308)
79 3nf1_A KLC 1, kinesin light ch 99.2 7.9E-11 2.7E-15 123.2 11.2 243 585-855 26-310 (311)
80 3ulq_A Response regulator aspa 99.1 2.5E-09 8.6E-14 115.6 22.0 233 592-854 109-370 (383)
81 3as5_A MAMA; tetratricopeptide 99.1 2.4E-09 8.4E-14 101.8 19.1 167 691-860 9-181 (186)
82 3edt_B KLC 2, kinesin light ch 99.1 1.5E-09 5.1E-14 111.5 16.6 220 666-885 12-280 (283)
83 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.2E-09 1.8E-13 103.3 18.5 184 690-892 4-219 (225)
84 3mv2_B Coatomer subunit epsilo 99.0 1.4E-08 4.8E-13 102.2 20.5 157 725-885 104-281 (310)
85 3q15_A PSP28, response regulat 99.0 2.6E-08 8.7E-13 107.4 23.4 163 691-853 183-366 (378)
86 1qqe_A Vesicular transport pro 99.0 2.4E-09 8.2E-14 110.6 13.3 199 670-885 32-268 (292)
87 4ga2_A E3 SUMO-protein ligase 99.0 9.1E-10 3.1E-14 100.7 8.7 141 729-872 5-149 (150)
88 4gyw_A UDP-N-acetylglucosamine 99.0 3.5E-09 1.2E-13 122.2 15.4 163 689-855 8-177 (723)
89 3qky_A Outer membrane assembly 99.0 8.1E-09 2.8E-13 104.8 16.5 181 689-888 14-226 (261)
90 1qqe_A Vesicular transport pro 99.0 1.6E-08 5.5E-13 104.3 18.9 174 690-865 77-282 (292)
91 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.9E-13 91.2 15.3 129 759-888 4-134 (136)
92 3qou_A Protein YBBN; thioredox 99.0 1.1E-08 3.6E-13 105.3 16.2 176 706-885 102-283 (287)
93 3qky_A Outer membrane assembly 98.9 1.8E-08 6.2E-13 102.2 17.3 205 653-877 13-252 (261)
94 3rjv_A Putative SEL1 repeat pr 98.9 5.3E-08 1.8E-12 94.9 19.7 173 708-888 4-199 (212)
95 1hz4_A MALT regulatory protein 98.9 1.9E-07 6.5E-12 100.3 25.8 222 664-885 23-281 (373)
96 2pzi_A Probable serine/threoni 98.9 5.4E-09 1.8E-13 121.6 13.7 147 666-817 402-560 (681)
97 3dra_A Protein farnesyltransfe 98.9 3.1E-07 1E-11 93.7 23.9 193 690-885 67-286 (306)
98 3gyz_A Chaperone protein IPGC; 98.9 9.3E-09 3.2E-13 93.4 11.2 102 787-888 31-135 (151)
99 3mv2_B Coatomer subunit epsilo 98.9 1.9E-07 6.6E-12 94.0 21.5 182 674-862 85-292 (310)
100 2vsy_A XCC0866; transferase, g 98.9 2.3E-08 7.9E-13 114.3 16.6 159 703-864 2-169 (568)
101 3edt_B KLC 2, kinesin light ch 98.9 5E-08 1.7E-12 100.0 17.5 199 655-853 43-282 (283)
102 4ga2_A E3 SUMO-protein ligase 98.9 4E-09 1.4E-13 96.4 7.8 126 762-889 3-132 (150)
103 2r5s_A Uncharacterized protein 98.8 1.5E-08 5.1E-13 95.6 11.5 77 809-885 92-172 (176)
104 3urz_A Uncharacterized protein 98.8 7.5E-08 2.6E-12 93.5 16.2 155 698-856 12-190 (208)
105 3urz_A Uncharacterized protein 98.8 7.2E-08 2.5E-12 93.7 15.8 163 723-889 6-189 (208)
106 4gco_A Protein STI-1; structur 98.8 2.3E-08 7.8E-13 88.0 10.8 97 792-888 14-112 (126)
107 2fo7_A Synthetic consensus TPR 98.8 1.5E-07 5.2E-12 83.7 15.5 130 723-855 3-135 (136)
108 3u3w_A Transcriptional activat 98.8 9E-07 3.1E-11 91.3 22.7 160 726-885 80-265 (293)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 3.4E-08 1.1E-12 102.8 11.9 219 632-879 3-254 (307)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.6E-07 5.4E-12 91.7 15.8 130 722-856 7-154 (213)
111 2ifu_A Gamma-SNAP; membrane fu 98.7 1.6E-07 5.4E-12 97.7 16.6 193 633-844 29-253 (307)
112 2vgx_A Chaperone SYCD; alterna 98.7 1.5E-08 5E-13 92.3 7.2 97 792-888 22-120 (148)
113 2pzi_A Probable serine/threoni 98.7 4E-07 1.4E-11 105.8 20.9 180 631-817 402-602 (681)
114 2vsy_A XCC0866; transferase, g 98.7 2E-07 6.8E-12 106.5 16.8 152 734-889 2-160 (568)
115 4gco_A Protein STI-1; structur 98.7 1.4E-07 4.7E-12 83.0 12.0 115 752-867 8-125 (126)
116 2c2l_A CHIP, carboxy terminus 98.7 8E-08 2.8E-12 98.3 11.8 191 689-886 3-199 (281)
117 2qfc_A PLCR protein; TPR, HTH, 98.7 5.9E-07 2E-11 92.7 18.5 162 723-884 77-264 (293)
118 3qou_A Protein YBBN; thioredox 98.7 2.3E-07 7.7E-12 95.3 14.9 135 754-889 114-251 (287)
119 3dra_A Protein farnesyltransfe 98.7 8.5E-06 2.9E-10 83.0 26.2 227 634-866 47-302 (306)
120 2yhc_A BAMD, UPF0169 lipoprote 98.6 8.7E-07 3E-11 87.2 17.4 184 655-858 4-219 (225)
121 4f3v_A ESX-1 secretion system 98.6 1.3E-07 4.5E-12 93.9 10.0 184 702-889 18-240 (282)
122 1a17_A Serine/threonine protei 98.6 6.4E-07 2.2E-11 83.1 14.4 126 759-885 16-145 (166)
123 2r5s_A Uncharacterized protein 98.6 5.4E-07 1.8E-11 84.7 13.6 155 693-851 9-172 (176)
124 2e2e_A Formate-dependent nitri 98.6 1.7E-07 5.7E-12 88.4 9.5 121 733-887 22-145 (177)
125 2xcb_A PCRH, regulatory protei 98.6 3.7E-07 1.3E-11 82.3 11.3 96 792-887 19-116 (142)
126 1hxi_A PEX5, peroxisome target 98.5 3.1E-07 1E-11 80.0 9.6 97 792-888 18-116 (121)
127 1p5q_A FKBP52, FK506-binding p 98.5 6E-07 2.1E-11 94.4 13.7 143 721-884 147-292 (336)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.3E-06 7.7E-11 83.3 16.7 130 692-823 8-154 (213)
129 3rjv_A Putative SEL1 repeat pr 98.5 2.5E-06 8.7E-11 82.8 16.8 174 674-854 5-199 (212)
130 2uy1_A Cleavage stimulation fa 98.5 8E-05 2.7E-09 82.2 30.8 203 533-748 196-411 (493)
131 2kck_A TPR repeat; tetratricop 98.5 6.2E-07 2.1E-11 76.6 10.9 100 791-890 6-110 (112)
132 2uy1_A Cleavage stimulation fa 98.5 8.7E-05 3E-09 82.0 30.8 203 637-851 196-412 (493)
133 3upv_A Heat shock protein STI1 98.5 5.6E-07 1.9E-11 79.1 10.7 96 792-887 5-102 (126)
134 2lni_A Stress-induced-phosphop 98.5 1E-06 3.5E-11 78.0 12.5 114 758-872 18-133 (133)
135 1na0_A Designed protein CTPR3; 98.5 1.7E-06 5.9E-11 75.4 13.7 113 758-871 11-125 (125)
136 2vyi_A SGTA protein; chaperone 98.5 1.1E-06 3.8E-11 77.4 12.6 115 758-873 14-130 (131)
137 3u3w_A Transcriptional activat 98.5 2.1E-05 7.1E-10 80.9 22.8 158 696-853 81-267 (293)
138 3sz7_A HSC70 cochaperone (SGT) 98.4 7.3E-07 2.5E-11 82.7 10.2 112 755-867 10-123 (164)
139 2vgx_A Chaperone SYCD; alterna 98.4 4.5E-07 1.5E-11 82.3 8.4 111 752-863 16-129 (148)
140 3gw4_A Uncharacterized protein 98.4 2.5E-06 8.4E-11 82.2 14.2 94 792-885 67-175 (203)
141 3q49_B STIP1 homology and U bo 98.4 9.9E-07 3.4E-11 78.8 10.6 98 791-888 9-108 (137)
142 4gcn_A Protein STI-1; structur 98.4 6.5E-07 2.2E-11 78.8 9.0 95 792-886 9-112 (127)
143 3q7a_A Farnesyltransferase alp 98.4 1.7E-05 5.7E-10 81.7 20.6 208 674-885 73-330 (349)
144 1elw_A TPR1-domain of HOP; HOP 98.4 2E-06 6.8E-11 74.1 11.4 95 793-887 6-102 (118)
145 3dss_A Geranylgeranyl transfer 98.4 2.5E-05 8.6E-10 80.0 21.0 180 706-888 90-306 (331)
146 2lni_A Stress-induced-phosphop 98.4 2E-06 6.7E-11 76.1 10.9 98 791-888 16-115 (133)
147 2dba_A Smooth muscle cell asso 98.4 3.3E-06 1.1E-10 76.4 12.2 96 792-887 29-129 (148)
148 3gyz_A Chaperone protein IPGC; 98.4 2.1E-06 7.2E-11 77.7 10.7 98 758-856 38-137 (151)
149 1na0_A Designed protein CTPR3; 98.3 3.5E-06 1.2E-10 73.4 11.7 98 791-888 9-108 (125)
150 2fbn_A 70 kDa peptidylprolyl i 98.3 3.3E-06 1.1E-10 81.0 12.3 169 699-887 13-187 (198)
151 2hr2_A Hypothetical protein; a 98.3 1.7E-06 5.8E-11 77.3 9.2 63 825-887 59-132 (159)
152 2xev_A YBGF; tetratricopeptide 98.3 1.8E-06 6.1E-11 76.1 9.4 89 797-885 8-104 (129)
153 4f3v_A ESX-1 secretion system 98.3 3.5E-06 1.2E-10 83.7 12.2 135 726-864 107-248 (282)
154 2e2e_A Formate-dependent nitri 98.3 2.7E-06 9.4E-11 79.9 10.7 113 700-816 20-140 (177)
155 2xcb_A PCRH, regulatory protei 98.3 3.4E-06 1.2E-10 75.9 10.7 109 758-867 20-130 (142)
156 2qfc_A PLCR protein; TPR, HTH, 98.3 7.4E-05 2.5E-09 76.7 22.2 165 622-816 77-262 (293)
157 2vyi_A SGTA protein; chaperone 98.3 3.1E-06 1.1E-10 74.4 10.3 98 791-888 12-111 (131)
158 1elw_A TPR1-domain of HOP; HOP 98.3 1.1E-05 3.7E-10 69.3 13.1 109 758-867 6-116 (118)
159 3q7a_A Farnesyltransferase alp 98.3 0.00024 8.2E-09 73.0 24.8 232 629-866 63-346 (349)
160 3gw4_A Uncharacterized protein 98.2 6.8E-06 2.3E-10 79.1 12.5 152 702-853 4-177 (203)
161 3upv_A Heat shock protein STI1 98.2 9.1E-06 3.1E-10 71.2 11.8 111 758-869 6-124 (126)
162 2dba_A Smooth muscle cell asso 98.2 1.7E-05 5.8E-10 71.6 13.5 110 758-869 30-145 (148)
163 3rkv_A Putative peptidylprolyl 98.2 3.8E-06 1.3E-10 77.6 9.2 63 825-887 65-127 (162)
164 3sz7_A HSC70 cochaperone (SGT) 98.2 1.1E-05 3.9E-10 74.5 12.4 94 792-885 12-107 (164)
165 3dss_A Geranylgeranyl transfer 98.2 5.3E-05 1.8E-09 77.6 18.3 188 702-896 41-273 (331)
166 3k9i_A BH0479 protein; putativ 98.2 1.4E-06 4.7E-11 75.4 5.0 83 804-886 3-90 (117)
167 1a17_A Serine/threonine protei 98.2 1.1E-05 3.8E-10 74.5 11.6 97 792-888 14-112 (166)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 9.8E-06 3.4E-10 89.1 12.9 160 704-884 248-413 (457)
169 1elr_A TPR2A-domain of HOP; HO 98.1 6.8E-06 2.3E-10 72.3 9.2 111 757-869 5-124 (131)
170 3ro3_A PINS homolog, G-protein 98.1 1.2E-05 4E-10 73.9 11.1 93 793-885 51-157 (164)
171 1dce_A Protein (RAB geranylger 98.1 5.9E-05 2E-09 84.7 18.7 170 703-875 42-244 (567)
172 3q49_B STIP1 homology and U bo 98.1 1.5E-05 5E-10 71.0 11.1 113 756-869 9-128 (137)
173 1wao_1 Serine/threonine protei 98.1 6.3E-06 2.2E-10 91.0 9.6 116 765-881 15-134 (477)
174 2c2l_A CHIP, carboxy terminus 98.1 1.7E-05 5.7E-10 80.9 11.9 113 755-868 3-117 (281)
175 4b4t_Q 26S proteasome regulato 98.1 2.3E-05 7.8E-10 85.9 13.8 163 723-885 57-244 (434)
176 4gcn_A Protein STI-1; structur 98.1 2.9E-05 9.9E-10 68.0 11.6 59 723-783 10-69 (127)
177 2if4_A ATFKBP42; FKBP-like, al 98.1 4.7E-06 1.6E-10 87.5 7.2 152 721-891 179-333 (338)
178 1p5q_A FKBP52, FK506-binding p 98.0 1.2E-05 4E-10 84.5 10.0 66 823-888 196-261 (336)
179 2fbn_A 70 kDa peptidylprolyl i 98.0 2.6E-05 9E-10 74.7 11.5 65 824-888 89-153 (198)
180 2kck_A TPR repeat; tetratricop 98.0 3.6E-05 1.2E-09 65.2 11.2 100 757-857 7-111 (112)
181 1ihg_A Cyclophilin 40; ppiase 98.0 2.2E-05 7.5E-10 83.3 11.7 137 722-879 224-363 (370)
182 2xev_A YBGF; tetratricopeptide 98.0 6.4E-05 2.2E-09 65.9 12.9 109 762-871 8-124 (129)
183 3n71_A Histone lysine methyltr 98.0 1.5E-05 5.3E-10 87.1 10.2 101 792-892 352-470 (490)
184 1elr_A TPR2A-domain of HOP; HO 98.0 2E-05 6.9E-10 69.1 9.2 93 723-817 6-105 (131)
185 3k9i_A BH0479 protein; putativ 97.9 7.4E-06 2.5E-10 70.7 5.1 94 769-862 3-100 (117)
186 3ma5_A Tetratricopeptide repea 97.9 4E-05 1.4E-09 63.7 9.4 66 821-886 5-70 (100)
187 1zu2_A Mitochondrial import re 97.9 8.8E-06 3E-10 72.5 5.1 99 768-889 14-123 (158)
188 3rkv_A Putative peptidylprolyl 97.9 2.8E-05 9.5E-10 71.6 8.8 80 792-871 64-146 (162)
189 2l6j_A TPR repeat-containing p 97.9 3.8E-06 1.3E-10 71.5 2.6 93 791-883 4-104 (111)
190 1hxi_A PEX5, peroxisome target 97.9 5.2E-05 1.8E-09 65.7 9.9 98 759-857 20-119 (121)
191 3bee_A Putative YFRE protein; 97.9 5.4E-05 1.8E-09 61.5 8.6 70 820-889 3-75 (93)
192 2kat_A Uncharacterized protein 97.8 4.7E-05 1.6E-09 65.2 8.4 77 810-886 4-82 (115)
193 1klx_A Cysteine rich protein B 97.8 0.00016 5.4E-09 64.3 11.8 112 770-888 9-128 (138)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 2.8E-05 9.7E-10 81.5 7.9 117 757-889 180-296 (338)
195 3ro3_A PINS homolog, G-protein 97.8 9.9E-05 3.4E-09 67.5 10.8 132 723-854 11-160 (164)
196 2hr2_A Hypothetical protein; a 97.8 4.6E-05 1.6E-09 68.0 7.8 74 793-866 59-145 (159)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 4.9E-05 1.7E-09 83.5 9.8 116 757-890 269-384 (457)
198 4b4t_Q 26S proteasome regulato 97.8 0.00022 7.5E-09 78.0 14.7 157 729-885 12-203 (434)
199 1wao_1 Serine/threonine protei 97.8 0.00011 3.9E-09 80.9 12.2 115 698-815 14-134 (477)
200 1dce_A Protein (RAB geranylger 97.7 0.00046 1.6E-08 77.4 16.9 154 733-889 40-224 (567)
201 1na3_A Designed protein CTPR2; 97.7 0.00014 5E-09 58.7 9.2 80 792-871 10-91 (91)
202 1ihg_A Cyclophilin 40; ppiase 97.7 8.2E-05 2.8E-09 78.9 9.6 114 757-888 224-338 (370)
203 2l6j_A TPR repeat-containing p 97.7 0.00014 4.6E-09 61.6 8.9 69 821-889 2-70 (111)
204 1na3_A Designed protein CTPR2; 97.5 0.00028 9.6E-09 57.0 8.4 66 823-888 9-74 (91)
205 3n71_A Histone lysine methyltr 97.3 0.0011 3.9E-08 72.3 11.7 95 758-852 353-464 (490)
206 1klx_A Cysteine rich protein B 97.3 0.0019 6.6E-08 57.1 11.3 112 735-854 9-128 (138)
207 1wy6_A Hypothetical protein ST 97.3 0.019 6.6E-07 48.0 15.8 139 731-890 17-158 (172)
208 2kc7_A BFR218_protein; tetratr 97.3 0.00068 2.3E-08 55.8 7.7 81 796-884 5-88 (99)
209 3ly7_A Transcriptional activat 97.2 0.0018 6.1E-08 66.4 10.8 78 819-898 273-350 (372)
210 1zu2_A Mitochondrial import re 97.1 0.00069 2.3E-08 60.3 6.2 124 731-886 12-147 (158)
211 2kc7_A BFR218_protein; tetratr 97.1 0.00054 1.9E-08 56.4 5.3 60 829-888 6-66 (99)
212 2kat_A Uncharacterized protein 97.1 0.0021 7.1E-08 54.7 9.0 64 792-855 20-85 (115)
213 3lvg_A Clathrin heavy chain 1; 97.0 0.0022 7.6E-08 66.7 10.1 229 181-435 82-324 (624)
214 3qww_A SET and MYND domain-con 97.0 0.00069 2.4E-08 72.7 6.6 60 826-885 343-410 (433)
215 3qwp_A SET and MYND domain-con 96.8 0.0016 5.3E-08 70.1 7.3 60 826-885 332-399 (429)
216 1pc2_A Mitochondria fission pr 96.8 0.0028 9.6E-08 55.7 7.3 92 771-863 13-111 (152)
217 3ly7_A Transcriptional activat 96.8 0.024 8.2E-07 58.1 15.1 136 720-857 193-344 (372)
218 3lvg_A Clathrin heavy chain 1; 96.8 0.0053 1.8E-07 64.0 10.1 397 281-712 52-534 (624)
219 3ma5_A Tetratricopeptide repea 96.6 0.0074 2.5E-07 49.6 8.5 62 720-783 6-68 (100)
220 3qww_A SET and MYND domain-con 96.6 0.007 2.4E-07 64.9 10.0 69 792-860 341-424 (433)
221 3qwp_A SET and MYND domain-con 96.4 0.015 5.1E-07 62.5 11.5 71 792-862 330-415 (429)
222 3mkq_A Coatomer beta'-subunit; 96.4 0.15 5E-06 60.5 21.5 153 630-817 609-762 (814)
223 3u64_A Protein TP_0956; tetrat 96.4 0.0092 3.2E-07 58.4 8.8 88 807-894 179-277 (301)
224 1pc2_A Mitochondria fission pr 96.3 0.012 4.2E-07 51.6 8.1 69 820-888 29-102 (152)
225 2v5f_A Prolyl 4-hydroxylase su 96.1 0.027 9.1E-07 46.6 9.0 71 794-864 8-87 (104)
226 2v5f_A Prolyl 4-hydroxylase su 95.9 0.025 8.6E-07 46.8 8.2 67 822-888 4-77 (104)
227 1qsa_A Protein (soluble lytic 95.9 3 0.0001 46.5 29.0 113 736-851 229-347 (618)
228 3mkq_B Coatomer subunit alpha; 95.6 0.85 2.9E-05 41.1 16.8 130 697-849 12-141 (177)
229 3mkq_A Coatomer beta'-subunit; 95.4 0.43 1.5E-05 56.4 19.6 95 495-606 662-756 (814)
230 3bee_A Putative YFRE protein; 95.3 0.067 2.3E-06 43.0 8.0 70 789-858 4-78 (93)
231 1nzn_A CGI-135 protein, fissio 95.2 0.15 5.1E-06 42.9 10.1 92 771-863 16-114 (126)
232 4gns_B Protein CSD3, chitin bi 95.2 0.058 2E-06 61.3 10.0 55 829-883 343-397 (754)
233 1nzn_A CGI-135 protein, fissio 94.7 0.078 2.7E-06 44.7 7.0 69 820-888 32-105 (126)
234 1y8m_A FIS1; mitochondria, unk 93.7 0.69 2.4E-05 39.6 10.8 75 788-862 36-116 (144)
235 3u64_A Protein TP_0956; tetrat 93.1 0.9 3.1E-05 44.6 12.2 113 703-817 134-266 (301)
236 3o48_A Mitochondria fission 1 93.0 0.36 1.2E-05 40.8 7.8 75 788-862 37-117 (134)
237 4h7y_A Dual specificity protei 92.9 0.77 2.6E-05 39.7 9.9 58 805-862 74-133 (161)
238 4h7y_A Dual specificity protei 92.8 0.28 9.5E-06 42.4 7.0 57 834-890 71-127 (161)
239 3mkq_B Coatomer subunit alpha; 92.6 4.3 0.00015 36.5 14.8 95 495-606 15-109 (177)
240 1wy6_A Hypothetical protein ST 91.9 5.2 0.00018 33.8 15.3 85 702-788 73-157 (172)
241 3ffl_A Anaphase-promoting comp 90.1 2.3 7.7E-05 37.6 10.1 123 750-883 12-148 (167)
242 3ffl_A Anaphase-promoting comp 88.7 2.7 9.2E-05 37.1 9.6 29 792-820 123-151 (167)
243 3o48_A Mitochondria fission 1 88.7 3.2 0.00011 35.0 9.6 70 818-887 35-108 (134)
244 1y8m_A FIS1; mitochondria, unk 88.4 5.8 0.0002 34.0 11.1 70 819-888 35-108 (144)
245 4ady_A RPN2, 26S proteasome re 88.4 43 0.0015 39.0 35.1 266 559-830 382-668 (963)
246 4b4t_P 26S proteasome regulato 88.3 29 0.001 36.9 19.8 95 723-817 139-244 (445)
247 2ff4_A Probable regulatory pro 87.0 1.5 5.2E-05 46.1 8.5 67 826-892 174-245 (388)
248 4b4t_P 26S proteasome regulato 86.7 20 0.00069 38.2 17.3 90 795-884 141-245 (445)
249 2ff4_A Probable regulatory pro 86.6 3.2 0.00011 43.6 10.7 70 724-795 174-249 (388)
250 1zbp_A Hypothetical protein VP 86.6 4.1 0.00014 39.3 10.3 121 729-860 5-137 (273)
251 3lpz_A GET4 (YOR164C homolog); 86.0 30 0.001 34.7 21.8 167 386-578 37-214 (336)
252 1qsa_A Protein (soluble lytic 85.9 48 0.0016 36.9 36.4 378 486-889 73-482 (618)
253 2wpv_A GET4, UPF0363 protein Y 85.7 30 0.001 34.4 21.2 167 387-579 36-216 (312)
254 4gns_B Protein CSD3, chitin bi 85.4 3.7 0.00013 46.7 11.0 53 728-782 344-397 (754)
255 4ady_A RPN2, 26S proteasome re 83.1 77 0.0026 37.0 42.0 257 494-758 383-663 (963)
256 2wpv_A GET4, UPF0363 protein Y 81.8 44 0.0015 33.3 20.9 166 589-783 36-215 (312)
257 4fhn_B Nucleoporin NUP120; pro 81.1 13 0.00045 45.3 14.4 144 660-810 817-990 (1139)
258 1wdy_A 2-5A-dependent ribonucl 80.0 29 0.00098 33.8 14.5 50 155-208 10-62 (285)
259 1v54_E Cytochrome C oxidase po 77.4 12 0.00041 29.7 7.8 50 814-863 36-85 (109)
260 1wdy_A 2-5A-dependent ribonucl 77.1 23 0.00078 34.6 12.7 84 116-208 6-95 (285)
261 2uwj_G Type III export protein 75.8 17 0.00058 28.6 8.1 62 390-454 45-106 (115)
262 2p58_C Putative type III secre 75.8 18 0.00061 28.6 8.2 62 390-454 46-107 (116)
263 3eu9_A Huntingtin-interacting 75.6 31 0.0011 32.5 12.9 86 112-207 7-98 (240)
264 2p58_C Putative type III secre 74.7 8.7 0.0003 30.2 6.3 85 263-352 22-106 (116)
265 2uwj_G Type III export protein 74.7 15 0.0005 29.0 7.5 78 162-243 21-98 (115)
266 4fhn_B Nucleoporin NUP120; pro 72.8 1.5E+02 0.0051 36.1 20.4 165 489-671 816-987 (1139)
267 1zbp_A Hypothetical protein VP 71.6 4.1 0.00014 39.3 4.9 60 799-858 5-66 (273)
268 1n11_A Ankyrin; clathrin, BAND 68.3 36 0.0012 36.0 12.4 21 187-207 82-102 (437)
269 1k1a_A B-cell lymphoma 3-encod 67.7 58 0.002 30.6 12.7 82 121-207 15-101 (241)
270 3kea_A K1L; tropism, ANK repea 65.4 54 0.0019 32.1 12.2 36 172-207 49-84 (285)
271 2y69_E Cytochrome C oxidase su 65.2 28 0.00097 29.3 7.8 50 814-863 79-128 (152)
272 1v54_E Cytochrome C oxidase po 63.7 35 0.0012 27.1 7.6 61 533-594 27-87 (109)
273 3esl_A Checkpoint serine/threo 63.1 60 0.002 29.7 10.4 47 839-885 95-143 (202)
274 1k1a_A B-cell lymphoma 3-encod 62.8 67 0.0023 30.1 12.1 183 157-349 16-211 (241)
275 3txn_A 26S proteasome regulato 62.7 1.5E+02 0.005 30.7 21.7 126 587-716 20-165 (394)
276 3lpz_A GET4 (YOR164C homolog); 61.4 1.4E+02 0.0047 30.0 23.1 166 589-783 38-214 (336)
277 4b4t_R RPN7, 26S proteasome re 61.4 90 0.0031 32.9 13.5 92 692-783 133-235 (429)
278 3b7b_A Euchromatic histone-lys 59.6 69 0.0024 30.0 11.4 201 123-342 19-235 (237)
279 3esl_A Checkpoint serine/threo 59.1 1.1E+02 0.0037 28.0 11.5 81 708-789 62-148 (202)
280 3jxi_A Vanilloid receptor-rela 58.3 44 0.0015 32.1 9.9 90 120-209 10-117 (260)
281 3mv2_A Coatomer subunit alpha; 55.9 57 0.0019 32.4 9.6 61 813-887 195-257 (325)
282 4b4t_R RPN7, 26S proteasome re 55.6 56 0.0019 34.5 10.7 82 736-817 109-194 (429)
283 2qx5_A Nucleoporin NIC96; mRNA 53.3 2.8E+02 0.0095 31.0 22.5 82 626-719 300-385 (661)
284 1n11_A Ankyrin; clathrin, BAND 52.8 1.1E+02 0.0037 32.2 12.7 39 169-207 29-69 (437)
285 4a1g_A Mitotic checkpoint seri 52.2 99 0.0034 26.8 9.5 74 811-887 55-131 (152)
286 3kea_A K1L; tropism, ANK repea 50.4 95 0.0032 30.3 11.0 116 186-309 32-152 (285)
287 3eiq_C Programmed cell death p 49.7 1.4E+02 0.0049 30.3 11.9 66 693-758 220-290 (358)
288 4g8k_A 2-5A-dependent ribonucl 49.2 2.1E+02 0.0072 28.4 17.3 39 269-307 220-260 (337)
289 2y69_E Cytochrome C oxidase su 48.8 1.2E+02 0.0042 25.6 9.8 46 718-764 85-130 (152)
290 4g8k_A 2-5A-dependent ribonucl 48.6 1.5E+02 0.0052 29.6 12.5 104 369-484 219-328 (337)
291 3eu9_A Huntingtin-interacting 48.4 83 0.0028 29.3 9.9 42 168-209 23-66 (240)
292 2wvi_A Mitotic checkpoint seri 48.0 1.2E+02 0.0041 26.7 9.6 42 844-885 81-124 (164)
293 3eiq_C Programmed cell death p 47.6 2.4E+02 0.0082 28.6 14.7 65 388-452 221-290 (358)
294 3txn_A 26S proteasome regulato 47.4 2.6E+02 0.0087 28.9 24.7 223 625-887 104-344 (394)
295 3jxi_A Vanilloid receptor-rela 46.8 31 0.0011 33.2 6.5 24 224-247 13-36 (260)
296 3hra_A Ankyrin repeat family p 45.1 87 0.003 28.3 9.2 56 293-348 113-172 (201)
297 3ljn_A Hypothetical protein; a 44.5 53 0.0018 33.5 8.3 17 292-308 179-195 (364)
298 3ltj_A Alpharep-4; protein eng 44.1 1.8E+02 0.0062 26.2 17.9 49 381-429 118-166 (201)
299 3aji_A 26S proteasome non-ATPa 42.5 1.4E+02 0.0049 27.5 10.5 85 119-208 10-96 (231)
300 4a1g_A Mitotic checkpoint seri 39.3 1.9E+02 0.0065 25.0 10.5 51 739-789 83-134 (152)
301 4gq2_M Nucleoporin NUP120; bet 39.2 1.6E+02 0.0055 34.8 12.1 47 825-871 899-950 (950)
302 4b4t_S RPN3, 26S proteasome re 38.6 67 0.0023 34.5 7.7 68 792-859 232-306 (523)
303 2rfa_A Transient receptor pote 37.9 1.7E+02 0.0058 27.0 10.2 89 187-280 77-183 (232)
304 2qx5_A Nucleoporin NIC96; mRNA 36.3 4.9E+02 0.017 29.0 23.1 39 389-427 157-198 (661)
305 3ltm_A Alpha-REP4; protein eng 36.1 2.5E+02 0.0085 25.4 19.3 48 484-531 125-172 (211)
306 3d9h_A CDNA FLJ77766, highly s 35.5 1.3E+02 0.0044 29.3 9.1 20 184-203 14-33 (285)
307 2zu6_B Programmed cell death p 35.5 1E+02 0.0034 30.6 8.0 63 694-756 170-237 (307)
308 2nsz_A Programmed cell death p 35.2 1.3E+02 0.0045 25.1 7.7 63 694-756 11-78 (129)
309 1ya0_A SMG-7 transcript varian 35.2 94 0.0032 33.4 8.3 55 829-883 158-212 (497)
310 2zu6_B Programmed cell death p 35.1 1E+02 0.0035 30.6 8.0 155 185-341 6-193 (307)
311 2rfa_A Transient receptor pote 33.3 1.9E+02 0.0066 26.6 9.8 21 325-345 162-182 (232)
312 2wvi_A Mitotic checkpoint seri 32.5 2.6E+02 0.0088 24.6 10.8 51 740-790 79-130 (164)
313 2d2s_A Exocyst complex compone 32.5 1.2E+02 0.0041 28.7 7.7 23 626-648 24-46 (235)
314 3hra_A Ankyrin repeat family p 32.4 2.7E+02 0.0092 24.8 10.5 39 168-206 53-93 (201)
315 3aji_A 26S proteasome non-ATPa 32.4 2.6E+02 0.0089 25.6 10.6 14 192-205 13-26 (231)
316 2etb_A Transient receptor pote 32.2 2E+02 0.0068 27.1 9.8 91 119-209 6-114 (256)
317 4b4t_S RPN3, 26S proteasome re 30.9 1.1E+02 0.0037 32.9 7.7 61 757-817 232-296 (523)
318 3kae_A CDC27, possible protein 30.0 2.9E+02 0.0099 24.4 15.3 81 700-782 43-140 (242)
319 3mkr_B Coatomer subunit alpha; 29.8 1.7E+02 0.0059 28.9 8.4 62 813-888 186-249 (320)
320 3ltm_A Alpha-REP4; protein eng 29.2 3.2E+02 0.011 24.6 18.1 48 382-429 124-171 (211)
321 3ljn_A Hypothetical protein; a 29.1 1.2E+02 0.0041 30.8 8.0 17 393-409 179-195 (364)
322 2ion_A PDCD4, programmed cell 29.0 1.1E+02 0.0039 26.5 6.3 64 693-756 12-80 (152)
323 2d2s_A Exocyst complex compone 28.0 1.5E+02 0.005 28.1 7.5 31 854-884 88-118 (235)
324 3ltj_A Alpharep-4; protein eng 27.9 3.3E+02 0.011 24.3 20.1 49 382-430 26-74 (201)
325 3b7b_A Euchromatic histone-lys 26.3 2.5E+02 0.0084 25.9 9.2 140 157-309 18-167 (237)
326 3ygs_P Procaspase 9; apoptosis 25.9 1.5E+02 0.0053 23.2 6.1 39 704-742 51-89 (97)
327 1bd8_A P19INK4D CDK4/6 inhibit 25.1 1.6E+02 0.0055 24.9 7.0 12 296-307 111-122 (156)
328 2nsz_A Programmed cell death p 24.3 3.1E+02 0.011 22.8 8.7 63 489-551 11-78 (129)
329 1oai_A Nuclear RNA export fact 23.0 60 0.0021 22.8 2.7 28 121-148 28-57 (59)
330 2crb_A Nuclear receptor bindin 22.7 89 0.003 24.2 3.7 25 859-883 17-41 (97)
331 4aez_C MAD3, mitotic spindle c 22.5 3.2E+02 0.011 25.4 8.3 81 807-890 100-183 (223)
332 2ko4_A Mediator of RNA polymer 22.2 1E+02 0.0034 23.0 3.8 36 103-138 25-62 (81)
333 3i5p_A Nucleoporin NUP170; hel 21.1 3.9E+02 0.013 28.7 10.0 69 818-886 173-246 (525)
334 3l6a_A Eukaryotic translation 20.9 6.6E+02 0.023 25.4 14.2 65 693-758 15-85 (364)
335 2ion_A PDCD4, programmed cell 20.7 2.8E+02 0.0097 23.9 7.3 64 488-551 12-80 (152)
336 1ug3_A EIF4GI, eukaryotic prot 20.2 3.7E+02 0.013 26.9 9.3 60 489-548 15-78 (339)
337 3ygs_P Procaspase 9; apoptosis 20.2 1E+02 0.0034 24.3 3.9 37 297-333 51-87 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-38 Score=364.48 Aligned_cols=496 Identities=8% Similarity=-0.011 Sum_probs=334.3
Q ss_pred hhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHH
Q 045600 293 YAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLT 372 (899)
Q Consensus 293 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 372 (899)
+.+.|....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.+ ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 55678888899999999989999999999999999999999999999985 4678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------------------CcchHHHHHHHHHHCCChhH
Q 045600 373 ACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNR-------------------NLLCWNAMMSAYVRNRFWDA 433 (899)
Q Consensus 373 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 433 (899)
..+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678899999999999999999999999965433 37799999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHhccCCChHHH--HHH-HHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHh
Q 045600 434 SLAVFRQMQFAGLNPDAV-SIISVLSGCSKLDDVLLG--KSA-HAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFH 509 (899)
Q Consensus 434 A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (899)
|+++|++|.+.+ |+.. .+..+...+...+..+.+ ..+ +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998864 5443 344444433333222211 111 3444444445555566666777777777777777777
Q ss_pred hcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh
Q 045600 510 RMST--RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVT 587 (899)
Q Consensus 510 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 587 (899)
++.. ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 368 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------- 368 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------
Confidence 7766 567777777777777777777777777776532 113333444444444444444444333333211
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 045600 588 FLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVL 667 (899)
Q Consensus 588 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 667 (899)
.+.+..+|+.++..|.+.|++++|.++|+++.+.. |+
T Consensus 369 ----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~------------- 405 (597)
T 2xpi_A 369 ----------------------------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQ------------- 405 (597)
T ss_dssp ----------------------------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------
T ss_pred ----------------------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC-------------
Confidence 12234445555555555555555555555554421 11
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 045600 668 INSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELF 744 (899)
Q Consensus 668 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 744 (899)
+..+|+.++..|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|
T Consensus 406 ---------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 406 ---------------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44456666667777777777777776664 336667777777777777777777777
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCccC--cchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 745 KQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEH----GISQK--MEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 745 ~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
+++.+. .| +..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++
T Consensus 465 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 465 QSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777763 34 5667777777777777777777777777644 55665 467777777787888888887777776
Q ss_pred -CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 818 -PC-KPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 818 -~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
.. +.+..+|..++..|...|+.++|...++++++++|+++.++..|+++|.
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 22 3356777788888888888888888888888888888888888877764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-37 Score=363.05 Aligned_cols=482 Identities=7% Similarity=-0.074 Sum_probs=403.5
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHH
Q 045600 394 YAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAH 473 (899)
Q Consensus 394 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 473 (899)
+.+.|....+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888889888888999999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCC-------------------ChhhHHHHHHHHHhcCCHHH
Q 045600 474 AFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTR-------------------SSVSWNTLISRCVQNGAVEE 534 (899)
Q Consensus 474 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 534 (899)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988654 678899999999999999999999999965443 37899999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHH--HH-HHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHH
Q 045600 535 AVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGM--VI-HGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLL 610 (899)
Q Consensus 535 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 610 (899)
|+++|++|.+. .|+ ...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|. .
T Consensus 219 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~---~ 293 (597)
T 2xpi_A 219 AKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE---D 293 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH---H
T ss_pred HHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH---H
Confidence 99999999984 454 455555555444433322221 11 444444455556667788899999999999999 7
Q ss_pred HhhcCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC
Q 045600 611 LFQMGDK--REISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK 688 (899)
Q Consensus 611 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 688 (899)
.++.+.. ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+... .
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-E 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-c
Confidence 8877766 799999999999999999999999999999876 34778899999999999999999999999996653 3
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~ 764 (899)
+..+++.++..|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+ ..| +..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHH
Confidence 78899999999999999999999999986 44688999999999999999999999999998 445 6789999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHh
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-------PCKPS--VSILESLLGACRI 835 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~ 835 (899)
+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++++++ +..|+ ..+|..++..|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999654 335689999999999999999999999987 44777 7889999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 836 HGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
.|++++|+..++++.+.+|+++.++..++.+|.+.|++++|.++++++.+..++
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999876553
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.8e-26 Score=255.61 Aligned_cols=212 Identities=9% Similarity=0.113 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHH
Q 045600 533 EEAVILLQRMQKEGVELDM-VTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLL 611 (899)
Q Consensus 533 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 611 (899)
..+..+.+++.+++..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.+...++.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~----- 81 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS----- 81 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS-----
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh-----
Confidence 3445566677777666543 4577888999999999999999999999999999999999999888877665542
Q ss_pred hhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChh
Q 045600 612 FQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVA 691 (899)
Q Consensus 612 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 691 (899)
+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.|+..
T Consensus 82 --------------------~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 82 --------------------PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred --------------------hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 234578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 045600 692 VSNALMDSYVRCGNISMARKLFGSLI----YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACS 767 (899)
Q Consensus 692 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 767 (899)
+|+.+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999986 78999999999999999999999999999999999999999999998887
Q ss_pred cc
Q 045600 768 HA 769 (899)
Q Consensus 768 ~~ 769 (899)
..
T Consensus 222 s~ 223 (501)
T 4g26_A 222 SE 223 (501)
T ss_dssp SH
T ss_pred cC
Confidence 64
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.2e-24 Score=230.73 Aligned_cols=369 Identities=10% Similarity=0.055 Sum_probs=251.5
Q ss_pred cCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 045600 497 DGGQFSYAFTLFHRMST--R-SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVI 573 (899)
Q Consensus 497 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 573 (899)
+.|++++|...++.+.. | +...+..+...+...|++++|...++...+. .+.+..++..+...+.+.|++++|...
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444444444444322 2 2333444444455555555555555554442 222344555555555555555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 045600 574 HGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEP 653 (899)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 653 (899)
++.+.+.. +.+...+..+...+.+.|++++|...+...-...+.+...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 55555432 11233455555555555555555522222222223344556666667777777777778887777653 23
Q ss_pred CHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHH
Q 045600 654 DNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMING 730 (899)
Q Consensus 654 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~ 730 (899)
+..++..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.+++.. .| +..+|..+...
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 4566777777777788888888888877776543 56677788888888899999988888775 33 57788888889
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHH
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNE 809 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 809 (899)
+...|++++|++.++++.+ ..| +..+|..+..++.+.|++++|.+.++++.+.. +.+...+..++..+.+.|++++
T Consensus 247 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999888 566 45678888888999999999999999888643 3455788888999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 045600 810 AFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGR 872 (899)
Q Consensus 810 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 872 (899)
|.+.++++ ...| +...+..++..+...|++++|...++++++.+|+++.++..++.+|...|+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99988887 4444 466788888888899999999999999999999999999999988887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.5e-27 Score=260.52 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=174.4
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCC---------hhhhhHHHHHHHHhCCCCch
Q 045600 112 VFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSD---------LRIGREIHCVIFRTGYHQNL 182 (899)
Q Consensus 112 ~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 182 (899)
...++.+|.+|++.|+.++|+++|++|.+.|+.||.+||+.||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987765 57789999999999999999
Q ss_pred hhhhHHHHHHHhcCChHHHHHHhccCC----CCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 045600 183 VIQTALVDFYAKKGEMLTARLLFDQIP----LADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVC 258 (899)
Q Consensus 183 ~~~~~l~~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 258 (899)
.+||+||++|++.|++++|.++|++|. .||.+|||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999985 6899999999999999999999999999999999999999999999999
Q ss_pred hccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcC
Q 045600 259 TRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGD 296 (899)
Q Consensus 259 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 296 (899)
++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988753
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.4e-23 Score=229.17 Aligned_cols=358 Identities=15% Similarity=0.097 Sum_probs=309.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 045600 522 LISRCVQNGAVEEAVILLQRMQKEGVELD-MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCG 600 (899)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 600 (899)
+...+.+.|++++|++.+.++.+. .|+ ...+..+...+...|++++|...++...+.. +.+...+..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345678899999999999998874 454 5566677778889999999999999988865 456788999999999999
Q ss_pred ChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHhcccCCHHHHHHHHH
Q 045600 601 STNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDN-VTVLSIISAGVLINSLNLTHSLMA 679 (899)
Q Consensus 601 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~ 679 (899)
++++|...++..-...+.+...|..+..++.+.|++++|...|+++.+.. |+. ..+..+...+...|++++|...++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999844433334445577789999999999999999999999999864 554 445566677888999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-
Q 045600 680 FVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN- 755 (899)
Q Consensus 680 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 755 (899)
.+.+..+. +...+..+...+.+.|++++|.+.|+++. +.+...|..+...+...|++++|+..+++..+ ..|+
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 99987544 57788999999999999999999999987 34577899999999999999999999999988 5674
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 045600 756 EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGAC 833 (899)
Q Consensus 756 ~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 833 (899)
..++..+..++...|++++|.+.++++.+.. +.+...|..++.++.+.|++++|.+.++++ ..+++...+..++..+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 6789999999999999999999999999643 223578999999999999999999999988 3455678899999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 834 RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
...|++++|+..++++++..|+++.++..++.+|.+.|++++|++.++++.+..+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999987543
No 7
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=1.4e-17 Score=193.82 Aligned_cols=539 Identities=10% Similarity=0.063 Sum_probs=369.3
Q ss_pred CCCCcchhhHHHHhhhcCCChhhHHHHHhhcCC---------------CCcc----------------------cHHHHH
Q 045600 279 YLFDDFLVPALISMYAGDLDLSTARKLFDSLLE---------------KNAS----------------------VWNAMI 321 (899)
Q Consensus 279 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~~~~----------------------~~~~li 321 (899)
...|+.+....|.+.++.|++.+.+++.++-.- +|.. .....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 455788888999999999999888888765310 1110 112334
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHh-------------hccCCcccchHHHHHHHHhCCCCchhHHH
Q 045600 322 SAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSC-------------ENYCSFQCGESLTACVIKNGLGNQPSVLT 388 (899)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-------------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 388 (899)
..|++.-++..+-.+...+... .-+......+|.+. -+.+++..-...++..+..| ..++.++|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~--d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hn 877 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDV--DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHN 877 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 5555554444444444443332 22333333343332 22223333333344444444 56788999
Q ss_pred HHHHHHHhcCChHHHHHHHhcC------------CCCCcc----------hHHHHHHHHHHCCChhHHHHHHHHHHHcCC
Q 045600 389 ALLSMYAKLGNIDSAKFLFDQI------------PNRNLL----------CWNAMMSAYVRNRFWDASLAVFRQMQFAGL 446 (899)
Q Consensus 389 ~li~~~~~~g~~~~A~~~~~~~------------~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 446 (899)
+|...|...++-.+. .+.+- .++|.. .-.-||...-+++.++.--+.+ .+
T Consensus 878 alakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~aryl---v~--- 949 (1630)
T 1xi4_A 878 ALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYL---VR--- 949 (1630)
T ss_pred HHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHH---HH---
Confidence 999999876653332 11111 012221 1123444444444444322221 11
Q ss_pred CCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCC------Chhh
Q 045600 447 NPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGI--VSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTR------SSVS 518 (899)
Q Consensus 447 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~ 518 (899)
+-|...|..++.- +-+.-+++.++.....+ ..++.-....+..|...|...+|.+++++..-. +...
T Consensus 950 r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 950 RKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred hcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 2455556665532 11222333333333222 234455567788888999999999999998742 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 045600 519 WNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCN 598 (899)
Q Consensus 519 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (899)
.+.++.+..+. +..+..+..++.... . ...+...+...|.+++|..+|++.. ......+.+ +..
T Consensus 1025 qnlLi~tAIka-D~~Rv~eyI~kLd~~-d------~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~ 1088 (1630)
T 1xi4_A 1025 QNLLILTAIKA-DRTRVMEYINRLDNY-D------APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEH 1088 (1630)
T ss_pred HHHHHHHHHHh-ChhhHHHHHHHhhhc-c------HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHH
Confidence 66677777776 556666666665521 1 2336677888999999999999862 111112222 337
Q ss_pred cCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHH
Q 045600 599 CGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLM 678 (899)
Q Consensus 599 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 678 (899)
.+++++|. +..++. .++.+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+++
T Consensus 1089 i~nldrAi---E~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1089 IGNLDRAY---EFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HhhHHHHH---HHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78899998 666654 45788999999999999999999999663 67788899999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Q 045600 679 AFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEIT 758 (899)
Q Consensus 679 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 758 (899)
....+....|.. .+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|+.. ..
T Consensus 1158 ~mArk~~~e~~I--dt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~n 1223 (1630)
T 1xi4_A 1158 QMARKKARESYV--ETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 1223 (1630)
T ss_pred HHHHhhcccccc--cHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hH
Confidence 988876533333 345999999999999755554 3566777888999999999999999999985 37
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCC
Q 045600 759 YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGN 838 (899)
Q Consensus 759 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 838 (899)
|..+...|.+.|++++|.+.+++. .+..+|..+..++...|++..|...... ...++..+..++..|...|.
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999886 3558899999999999999999887764 45566677899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CChHHHHHHHHH
Q 045600 839 VELGEIISGMLFEMDPENPGSYVMLHNIYASA--GRWEDAYRVRSC 882 (899)
Q Consensus 839 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~--g~~~eA~~~~~~ 882 (899)
+++|+.+++..+.++|.+...+..|+.+|.+- ++..|++++|..
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864 688888888775
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-21 Score=221.28 Aligned_cols=439 Identities=10% Similarity=-0.004 Sum_probs=286.1
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 045600 416 LCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFY 495 (899)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 495 (899)
..|......+.+.|++++|+..|+++.+.. |+...+..+..++...|++++|...+..+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 356666777888888888888888887764 677777777777777777777777777666543 22334444444445
Q ss_pred HcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHH
Q 045600 496 SDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMV 572 (899)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 572 (899)
.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------- 150 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE------------- 150 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH-------------
Confidence 455555544444444322 1222222223222222222222222222222222222111110000
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCC-CCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 045600 573 IHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGD-KREISLWNAIISVYVQ---TNKAKQAVAFFTELLG 648 (899)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~ 648 (899)
........|+.......+.. +..+. .. .... +.+...+......+.. .|++++|+..|+++.+
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~------~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 151 ---RKDKQENLPSVTSMASFFGI------FKPEL---TF-ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp ---------CCCCHHHHHHHHTT------SCCCC---CC-SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred ---HHhhccCCchhHHHHHHHhh------cCHHH---HH-HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 00001111222111111111 11000 00 0001 1234445555554554 7889999999999888
Q ss_pred -----CCCCC--------CHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHh
Q 045600 649 -----AGLEP--------DNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGS 715 (899)
Q Consensus 649 -----~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 715 (899)
..-.| +...+..+...+...|+++.|...++.+.+.... ...+..+...+...|++++|.+.+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 32222 2345667777888899999999999999888655 77888889999999999999999988
Q ss_pred cC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc
Q 045600 716 LI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM 791 (899)
Q Consensus 716 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 791 (899)
+. ..+...|..+...+...|++++|+..++++.+ ..| +...+..+...+...|++++|..+++++.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 76 33677888899999999999999999999988 455 45688888889999999999999999988543 2345
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---hCCHHHHHHHHHHHHhcCCCCchhH
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL----PCKPS----VSILESLLGACRI---HGNVELGEIISGMLFEMDPENPGSY 860 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~ 860 (899)
..+..++..+.+.|++++|...++++ +..++ ...+..++..+.. .|+++.|...++++++..|+++.++
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 78888999999999999999998877 22222 3478888888888 8999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 861 VMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 861 ~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
..++.+|.+.|++++|.+.++++.+..+
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-20 Score=214.04 Aligned_cols=449 Identities=9% Similarity=-0.066 Sum_probs=315.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 045600 384 PSVLTALLSMYAKLGNIDSAKFLFDQIPN--RNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCS 461 (899)
Q Consensus 384 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 461 (899)
...+..+...+.+.|++++|...|+++.. |+...|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34667788899999999999999999864 788899999999999999999999999998864 234567888999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHH
Q 045600 462 KLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST----RSSVSWNTLISRCVQNGAVEEAVI 537 (899)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 537 (899)
..|++++|...+..+.+.+. ++......++..+.+......+.+.+..+.. ++...+..................
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988764 3333444444444433333333333322221 111111111100111111111111
Q ss_pred HHHHHHHcCCC--------CC-HHHHHHHHHHHh---cCCChHHHHHHHHHHHH-----hCCCCChhHHHHHHHHHHhcC
Q 045600 538 LLQRMQKEGVE--------LD-MVTLISFLPNLN---KNGNIKQGMVIHGYAIK-----TGCVADVTFLNALITMYCNCG 600 (899)
Q Consensus 538 ~~~~m~~~g~~--------p~-~~t~~~ll~~~~---~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g 600 (899)
+...+...... |+ ...+......+. +.|++++|...++.+.+ ..-.|+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------- 232 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL----------- 232 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH-----------
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc-----------
Confidence 11111111111 11 222222222222 24555555555554443 1101110000
Q ss_pred ChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHH
Q 045600 601 STNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAF 680 (899)
Q Consensus 601 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 680 (899)
.+.+..+|..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.
T Consensus 233 ---------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 233 ---------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 01235567788888999999999999999998865 4477788888889999999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-Ch
Q 045600 681 VIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NE 756 (899)
Q Consensus 681 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 756 (899)
+.+.... +...+..+...+...|++++|.+.++++. +.+...+..+...+...|++++|++.++++.+ ..| +.
T Consensus 296 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 372 (514)
T 2gw1_A 296 ALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAP 372 (514)
T ss_dssp HHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCS
T ss_pred HhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCH
Confidence 8877543 56788899999999999999999999886 34678899999999999999999999999988 455 55
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-ccC----cchHHHHHHHHhh---cCChHHHHHHHHhC-CC-CCCHHHH
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGI-SQK----MEHYACMVDLLGR---TGHLNEAFIFVKKL-PC-KPSVSIL 826 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~ 826 (899)
..+..+...+...|++++|...++++.+... .++ ...+..++.++.. .|++++|.+.++++ .. +.+...+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 6888899999999999999999999984321 111 2388899999999 99999999999987 33 3456778
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045600 827 ESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHN 865 (899)
Q Consensus 827 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 865 (899)
..++..+...|+.++|...++++++++|+++..+..+..
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 899999999999999999999999999999988877733
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.1e-19 Score=202.91 Aligned_cols=221 Identities=9% Similarity=0.070 Sum_probs=168.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 045600 668 INSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELF 744 (899)
Q Consensus 668 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 744 (899)
.|++++|...++.+.+.... +...+..+...|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|++.+
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444433221 45566777778888888888888888775 456778888888888889999999999
Q ss_pred HHHHHcCCCCChh-HHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCccC-----cchHHHHHHHHhhcCC
Q 045600 745 KQMQLSGVRPNEI-TYLGV------------LSACSHAGLVEQSKMVFKSMVEHGISQK-----MEHYACMVDLLGRTGH 806 (899)
Q Consensus 745 ~~m~~~g~~p~~~-t~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~ 806 (899)
+++.+ ..|+.. .+..+ ...+.+.|++++|..+|+++.+.. |+ ...|..++.++.+.|+
T Consensus 235 ~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 235 RECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCC
Confidence 88887 566543 34443 678889999999999999998543 43 3478889999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH------------HHHhcC-
Q 045600 807 LNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHN------------IYASAG- 871 (899)
Q Consensus 807 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~y~~~g- 871 (899)
+++|.+.++++ ...| +...|..++..|...|++++|...++++++++|+++.++..++. .|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999987 4344 67889999999999999999999999999999999999999994 455566
Q ss_pred ----ChHHHHHHHHH-HHhCCCccCCC
Q 045600 872 ----RWEDAYRVRSC-MKRSRLKKVPG 893 (899)
Q Consensus 872 ----~~~eA~~~~~~-~~~~~~~~~~~ 893 (899)
+.+++.+.+++ ..+..+++.|.
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~~~ 417 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNFQN 417 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGCCS
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 66777888886 55555555543
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=5.4e-16 Score=180.62 Aligned_cols=742 Identities=12% Similarity=0.076 Sum_probs=364.4
Q ss_pred hhccHHHHhhcCCCCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhHH
Q 045600 93 EITSYHIALSSFPIIKK---PCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGREI 169 (899)
Q Consensus 93 ~~~~~~~a~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 169 (899)
..+.|..|-++-...|. |+..|.|.+-+.=..-|++.-.+..|..+.+.| +.|.+-=.-+++.-...|+.+....+
T Consensus 373 ~~g~y~~AA~~aa~sp~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~Ln~~eSlEl~r~vl~q~r~~lle~W 451 (1630)
T 1xi4_A 373 AQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (1630)
T ss_pred HcCCHHHHHHHHHhCccccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhchHHHHHHH
Confidence 34456666555444442 455556655555556677777777777777776 33433222233333334443333332
Q ss_pred HHH-----------HHHhCCCCc--------hhhhhHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCch
Q 045600 170 HCV-----------IFRTGYHQN--------LVIQTALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQ 230 (899)
Q Consensus 170 ~~~-----------~~~~g~~~~--------~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 230 (899)
..+ +++. ..+. ..+.+-.+.++++.|.++.+...-.+.. ...-|..|+..+.+. +++
T Consensus 452 l~e~KL~~SEeLGDlv~~-~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~ 527 (1630)
T 1xi4_A 452 LKEDKLECSEELGDLVKS-VDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPD 527 (1630)
T ss_pred HHhCCccccHHHHHHHHh-cChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChH
Confidence 221 1111 0111 1133455666777777777666655432 234477888887755 588
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcch-------------------------
Q 045600 231 EALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDFL------------------------- 285 (899)
Q Consensus 231 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~------------------------- 285 (899)
.|.++-..+.... |....++.+++.+...+...++..++-...+.+-+.+..+
T Consensus 528 ~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~f 605 (1630)
T 1xi4_A 528 QGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMF 605 (1630)
T ss_pred HHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCcc
Confidence 8888877777652 3456688888999999999999888888877764422222
Q ss_pred ----hhHHHHhhhcCCChhhHHHHHhhcCC-------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhh---
Q 045600 286 ----VPALISMYAGDLDLSTARKLFDSLLE-------KNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVT--- 351 (899)
Q Consensus 286 ----~~~li~~~~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--- 351 (899)
+..+...|-+.|-+..|.+.+..+.. .....-..++.-+.+ =..+.+++.+++|...+++-+...
T Consensus 606 thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvq 684 (1630)
T 1xi4_A 606 THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQ 684 (1630)
T ss_pred ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhh
Confidence 23344556677777777777765521 112223334443333 456778888888876554433222
Q ss_pred ----------HHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---------
Q 045600 352 ----------FVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPN--------- 412 (899)
Q Consensus 352 ----------~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 412 (899)
-..++..+-+.+.++.---.+..++ ...-|+.+....|.+.++.|++.+..++.++-.-
T Consensus 685 va~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~f 762 (1630)
T 1xi4_A 685 VASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNF 762 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHH
Confidence 2223333333333333222222222 2456788899999999999999888888766321
Q ss_pred ------CCc----------------c------hHHHHHHHHHHCCChhHHHHHHHHHHHcCCC-----------CCHHHH
Q 045600 413 ------RNL----------------L------CWNAMMSAYVRNRFWDASLAVFRQMQFAGLN-----------PDAVSI 453 (899)
Q Consensus 413 ------~~~----------------~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~ 453 (899)
+|. + .....|..|.+.-++..+-.+...+.+.+.. ......
T Consensus 763 lk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~ 842 (1630)
T 1xi4_A 763 LKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFST 842 (1630)
T ss_pred HhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCH
Confidence 111 0 0123344444433222222221111111110 111124
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHH-------------HHHhhcCCCChhh--
Q 045600 454 ISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAF-------------TLFHRMSTRSSVS-- 518 (899)
Q Consensus 454 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-------------~~~~~~~~~~~~~-- 518 (899)
..|+..+-+.+++..-..+++.-+..|. .++.++|+|...|...++-.+.. +..++ +|+..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~---rDp~la~ 918 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEK---RDPHLAC 918 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHh---cCcchHH
Confidence 4455555555555555555555554442 34455566655555433322110 00000 00000
Q ss_pred --------HHHHHHHHHhcCCHHH----------------HH--------HHHHHHHH----cCCCCCHHHHHHHHHHHh
Q 045600 519 --------WNTLISRCVQNGAVEE----------------AV--------ILLQRMQK----EGVELDMVTLISFLPNLN 562 (899)
Q Consensus 519 --------~~~li~~~~~~g~~~~----------------A~--------~~~~~m~~----~g~~p~~~t~~~ll~~~~ 562 (899)
-.-||..+.+++.+.. ++ ++.+.-.. +...|+.+ .....++.
T Consensus 919 iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeV--s~~vKaf~ 996 (1630)
T 1xi4_A 919 VAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEV--SVTVKAFM 996 (1630)
T ss_pred HHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHh--HHHHHHHH
Confidence 0011111111111110 00 11111111 11223332 33445555
Q ss_pred cCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 045600 563 KNGNIKQGMVIHGYAIKTG--CVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAV 640 (899)
Q Consensus 563 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 640 (899)
..|.+.++.++++.+.-.+ +.-+...-+.++.+..+. +..... +...+....+ ...+...+...|.+++|.
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~---eyI~kLd~~d---~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVM---EYINRLDNYD---APDIANIAISNELFEEAF 1069 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHH---HHHHHhhhcc---HHHHHHHHHhCCCHHHHH
Confidence 5566666666665555221 112223333344333333 112222 2222211111 222334444444444444
Q ss_pred HHHHHHHHCC---------------------CCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 045600 641 AFFTELLGAG---------------------LEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDS 699 (899)
Q Consensus 641 ~l~~~m~~~g---------------------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 699 (899)
.+|++..... -.-+..+|..+-.++...|++++|...|.+. -+...|..++..
T Consensus 1070 ~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~ 1143 (1630)
T 1xi4_A 1070 AIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQA 1143 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHH
Confidence 4444421000 0012334444444555555555555544332 234444445555
Q ss_pred hHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHH
Q 045600 700 YVRCGNISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKM 777 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~ 777 (899)
+.+.|++++|.+.+.... .+++...+.++.+|++.+++++.... .+ .|+...|..+...|...|++++|..
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 555555555555554332 12222222344445554444432211 11 3344445555555666666666666
Q ss_pred HHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 045600 778 VFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENP 857 (899)
Q Consensus 778 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 857 (899)
+|+.+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... -..++
T Consensus 1217 ~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~----Iiv~~ 1280 (1630)
T 1xi4_A 1217 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH----IVVHA 1280 (1630)
T ss_pred HHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHh----hhcCH
Confidence 66553 35666666666666666666666665 3445666666666666666666655432 12456
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
..+..++..|.+.|.++||+.+++.....
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 67889999999999999999999887543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.2e-19 Score=205.46 Aligned_cols=420 Identities=12% Similarity=0.043 Sum_probs=246.1
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 045600 417 CWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYS 496 (899)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 496 (899)
.|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+..+++.. +.+...+..+...+.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 44555666666667777777766666542 2244445555555555566666666665555543 224445555566666
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcCCChHHH
Q 045600 497 DGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKE------GVELDMVTLISFLPNLNKNGNIKQG 570 (899)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a 570 (899)
..|++++|...|+.+. .+....+..+..+...+...+|...++++... ...|+......
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------- 169 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS-------------- 169 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH--------------
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH--------------
Confidence 6666666666665332 11112222233444444455666666665432 12223222221
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChh---hHHHHHHHH--------HHcCCHHHH
Q 045600 571 MVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREIS---LWNAIISVY--------VQTNKAKQA 639 (899)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~--------~~~g~~~~A 639 (899)
+....+.+.+. ..+......+.. ....+...+ ...|++++|
T Consensus 170 -------------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 170 -------------------------FFGIFDSHLEV---SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp -------------------------HHHTSCHHHHH---HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred -------------------------HHHhcChHHHH---HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22222222222 222222221111 111111111 112466777
Q ss_pred HHHHHHHHHCCCCCC--------HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHH
Q 045600 640 VAFFTELLGAGLEPD--------NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARK 711 (899)
Q Consensus 640 ~~l~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 711 (899)
..+++++.+.. |+ ..++..+...+...|+++.|...++...+.... ...+..+...+...|++++|.+
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHH
Confidence 77777777643 33 123445555666777777777777777776433 5667777777777888888888
Q ss_pred HHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045600 712 LFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGI 787 (899)
Q Consensus 712 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 787 (899)
.++++. +.+..+|..+...+...|++++|++.++++.+ ..| +...+..+...+...|++++|..+++++.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 877765 33566777777788888888888888888777 345 34577777777788888888888888777543
Q ss_pred ccCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhh----------CCHHHHHHHHHHH
Q 045600 788 SQKMEHYACMVDLLGRTGHLNEAFIFVKKL----PCKP----SVSILESLLGACRIH----------GNVELGEIISGML 849 (899)
Q Consensus 788 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~ 849 (899)
+.+...+..++.++...|++++|.+.++++ +..+ ....+......+... |++++|+..++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 223467777788888888888888777765 1111 112234445556666 8888888888888
Q ss_pred HhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 850 FEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 850 ~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
++.+|+++.++..++.+|.+.|++++|++.++++.+..+
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888776443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=8.1e-19 Score=195.67 Aligned_cols=364 Identities=11% Similarity=-0.002 Sum_probs=250.0
Q ss_pred cHhHHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045600 484 NLDVLNALLMFYSDGGQFSYAFTLFHRMST---RSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPN 560 (899)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 560 (899)
+...+..+...+.+.|++++|..+|+++.. .+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 445566666666667777777777666543 356666777777777777777777777776642 2245566666677
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHH
Q 045600 561 LNKNGNIKQGMVIHGYAIKTGCVADV---TFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAK 637 (899)
Q Consensus 561 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 637 (899)
+...|++++|...++.+.+.... +. ..+..+...+... .+..+...+...|+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ----------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHcCCHH
Confidence 77777777777777766654321 12 3333333332211 1223344577788888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC
Q 045600 638 QAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI 717 (899)
Q Consensus 638 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 717 (899)
+|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.... +...+..+...|...|++++|.+.|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888753 346677777888888888888888888888776433 56778888888888999999998888876
Q ss_pred --CC-CHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHccCCHHHHHH
Q 045600 718 --YK-DAFSWSVM------------INGYGLYGDGEAALELFKQMQLSGVRPN-----EITYLGVLSACSHAGLVEQSKM 777 (899)
Q Consensus 718 --~~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~l~~~~~~~g~~~~A~~ 777 (899)
.| +...+..+ ...+...|++++|++.|+++.+ ..|+ ...+..+...+.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 33 44455444 7888889999999999999988 5565 3467778888999999999999
Q ss_pred HHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH------------HHhhC-----C
Q 045600 778 VFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV-SILESLLGA------------CRIHG-----N 838 (899)
Q Consensus 778 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~------------~~~~g-----~ 838 (899)
.++++.+.. +.+...|..++.+|...|++++|...++++ ...|+. ..+..+... +...| +
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999988543 234588888999999999999999999887 566654 445555422 22233 5
Q ss_pred HHHHHHHHHH-HHhcCCCCch----------hHHHHHHHHHhcCChHHH
Q 045600 839 VELGEIISGM-LFEMDPENPG----------SYVMLHNIYASAGRWEDA 876 (899)
Q Consensus 839 ~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~y~~~g~~~eA 876 (899)
.+++.+.+++ +++..|++.. .+..++.+|...|+.+++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 6677888876 7778877432 445566666666655443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=3.4e-17 Score=187.13 Aligned_cols=233 Identities=9% Similarity=-0.045 Sum_probs=183.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN 705 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 705 (899)
+...+...|++++|...|++..+. .|+...+..+...+...|+++.|...++.+.+.... +..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCC
Confidence 344556667777777888887775 355677777777888888888888888888877544 56778888999999999
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHH
Q 045600 706 ISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 706 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~ 781 (899)
+++|.+.++++. +.+...|..+...+...|++++|++.++++.+ ..| +...+..+...+...|++++|...+++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999886 34577899999999999999999999999988 456 456888888899999999999999999
Q ss_pred HHHcCCcc-----CcchHHHHHHHHhhc----------CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHH
Q 045600 782 MVEHGISQ-----KMEHYACMVDLLGRT----------GHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 782 m~~~~~~p-----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
+.+..... ....+..+..++.+. |++++|...++++ . .+.+...+..++..+...|++++|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 88433111 112244566778888 9999999999987 3 33456778899999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHH
Q 045600 845 ISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 845 ~~~~~~~~~p~~~~~~~~l 863 (899)
.+++++++.|+++.....+
T Consensus 484 ~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHH
Confidence 9999999999987765543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=4.6e-17 Score=175.14 Aligned_cols=308 Identities=12% Similarity=0.085 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHH
Q 045600 551 MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVY 630 (899)
Q Consensus 551 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 630 (899)
...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++......+.+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45566777788888888888888888887643 34667777777788888888887444333333444667777777778
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CH-hHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCH
Q 045600 631 VQTNKAKQAVAFFTELLGAGLEP---DN-VTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNI 706 (899)
Q Consensus 631 ~~~g~~~~A~~l~~~m~~~g~~p---~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 706 (899)
...|++++|...|++..+. .| +. ..+..+.... ....+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 8888888888888877764 34 22 2221111000 011123345667778888
Q ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 045600 707 SMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 707 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m 782 (899)
++|.+.++++. +.+...+..+...+...|++++|++.++++.+ ..| +..++..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887765 34666777788888888888888888888876 455 4567777777888888888888888887
Q ss_pred HHcCCccCc-chHH------------HHHHHHhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhhCCHHHHH
Q 045600 783 VEHGISQKM-EHYA------------CMVDLLGRTGHLNEAFIFVKKL-PCKPS-V----SILESLLGACRIHGNVELGE 843 (899)
Q Consensus 783 ~~~~~~p~~-~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~ 843 (899)
.+.. |+. ..+. .++..+.+.|++++|.+.++++ ...|+ + ..+..+...+...|+++.|.
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7433 332 2222 2366688888888888888876 33333 2 22445667788888888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 844 IISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
..++++++.+|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 888888888888888888888888888888888888888876544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.6e-16 Score=168.13 Aligned_cols=327 Identities=8% Similarity=-0.002 Sum_probs=243.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 515 SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALIT 594 (899)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 594 (899)
++..+..+...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 4567888899999999999999999999884 233578888999999999999999999999998753 35688899999
Q ss_pred HHHhcCChhhhhhHHHHhhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCH
Q 045600 595 MYCNCGSTNDGRLCLLLFQMGDK---REISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSL 671 (899)
Q Consensus 595 ~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 671 (899)
.+...|++++|...++......+ .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999844433333333 34444544421100 00111222334444555
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 672 NLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 672 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
++|...++.+.+.... +...+..+...+...|++++|.+.++++. +.+...|..+...+...|++++|++.+++..
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555544332 45566777788888888888888888775 3467788888888888899999999888888
Q ss_pred HcCCCCCh-hHHH------------HHHHHHHccCCHHHHHHHHHHHHHcCCccCc-----chHHHHHHHHhhcCChHHH
Q 045600 749 LSGVRPNE-ITYL------------GVLSACSHAGLVEQSKMVFKSMVEHGISQKM-----EHYACMVDLLGRTGHLNEA 810 (899)
Q Consensus 749 ~~g~~p~~-~t~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A 810 (899)
+ ..|+. ..+. .+...+...|++++|...++++.+.. |+. ..+..++.++...|++++|
T Consensus 216 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 7 45543 2332 22556889999999999999998544 332 3355688999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 811 FIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 811 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
.+.+++. ...| ++..+..++..+...|++++|...++++++++|+++.++..+..++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999987 3344 67789999999999999999999999999999999999999988876544
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.3e-17 Score=173.20 Aligned_cols=343 Identities=15% Similarity=0.136 Sum_probs=154.5
Q ss_pred ccHHHHhhcCCCCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhHHHHHHH
Q 045600 95 TSYHIALSSFPIIKKPCVFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGREIHCVIF 174 (899)
Q Consensus 95 ~~~~~a~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 174 (899)
+++++|...|++++.|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+...+
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45789999999997765 9999999999999999999999763 688899999999999999999999888888
Q ss_pred HhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 045600 175 RTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSV 254 (899)
Q Consensus 175 ~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 254 (899)
+. .+++.+.+.|+.+|+|.|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 74 46688999999999999999999999874 67789999999999999999999999987 478889
Q ss_pred HHHhhccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHH
Q 045600 255 IPVCTRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAF 334 (899)
Q Consensus 255 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 334 (899)
..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|.+++|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 99999999999988888877 367888888888888889988877766654 44444556888888888888888
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHH--hcCChHHHHHHHhcCCC
Q 045600 335 EIFRQMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYA--KLGNIDSAKFLFDQIPN 412 (899)
Q Consensus 335 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 412 (899)
.+++...... +.-...| +-|..+|+ +-+++.+..+.|..-..
T Consensus 228 ~lLe~aL~le-~ah~~~f-----------------------------------tel~il~~ky~p~k~~ehl~~~~~~in 271 (449)
T 1b89_A 228 TMLEAALGLE-RAHMGMF-----------------------------------TELAILYSKFKPQKMREHLELFWSRVN 271 (449)
T ss_dssp HHHHHHTTST-TCCHHHH-----------------------------------HHHHHHHHTTCHHHHHHHHHHHSTTSC
T ss_pred HHHHHHhCCc-HHHHHHH-----------------------------------HHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 8888876433 1122222 33333333 34566666666665443
Q ss_pred --------CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc
Q 045600 413 --------RNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSN 484 (899)
Q Consensus 413 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 484 (899)
.+...|..+.-.|.+.++++.|.. .|.+. .|+...-........+..+.+.--+.....+.. .
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~ 342 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----K 342 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----C
Confidence 245679999999999999998876 45443 234333333344444555555444444333322 2
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhc
Q 045600 485 LDVLNALLMFYSDGGQFSYAFTLFHRM 511 (899)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (899)
+...+.|+.++...=+.+.+..+|++.
T Consensus 343 p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 343 PLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp GGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 223455555554444455555554443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=2e-16 Score=168.00 Aligned_cols=251 Identities=13% Similarity=0.049 Sum_probs=168.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccC-CHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLIN-SLNLTHSLMAFVIRKGLDKHVAVSNALM 697 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li 697 (899)
+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|...++...+.... +...+..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 34444455555566666666666666666542 223445555555566666 666666666666554322 455667777
Q ss_pred HHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHH
Q 045600 698 DSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVE 773 (899)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~ 773 (899)
..+...|++++|.+.++++. +.+...+..+...|...|++++|++.+++..+ ..| +...+..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHH
Confidence 77777777777777777765 23455666677777788888888888887776 445 4457777777778888888
Q ss_pred HHHHHHHHHHHcC--------CccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHH
Q 045600 774 QSKMVFKSMVEHG--------ISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 774 ~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
+|...++++.+.. .+.....+..++.+|...|++++|...++++ . .+.+...+..++..+...|++++|.
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence 8888887777421 1222467777888888888888888887776 2 2234566777778888888888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHH-hcCCh
Q 045600 844 IISGMLFEMDPENPGSYVMLHNIYA-SAGRW 873 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~ 873 (899)
..++++++.+|+++.++..++.+|. ..|+.
T Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888888888888888888888774 45543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.1e-16 Score=167.76 Aligned_cols=266 Identities=11% Similarity=0.035 Sum_probs=229.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 045600 618 REISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALM 697 (899)
Q Consensus 618 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 697 (899)
.+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 456677788888999999999999999998864 344556666778889999999999999999987654 677888899
Q ss_pred HHhHhcC-CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCH
Q 045600 698 DSYVRCG-NISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLV 772 (899)
Q Consensus 698 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~ 772 (899)
..+...| ++++|.+.+++.. +.+...|..+...+...|++++|++.++++.+ ..| +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999986 33577899999999999999999999999998 455 456777888899999999
Q ss_pred HHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhhCCHHH
Q 045600 773 EQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC----------KPSVSILESLLGACRIHGNVEL 841 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 841 (899)
++|.+.++++.+.. +.+...+..++..+...|++++|...++++ .. ......+..++..+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999543 234588899999999999999999999876 11 3345688999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 842 GEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 842 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999876543
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=6.8e-17 Score=169.61 Aligned_cols=283 Identities=11% Similarity=0.084 Sum_probs=104.1
Q ss_pred HhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHhhccCChhhhhHHHH
Q 045600 193 AKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVCTRLGHFCFGKSLHG 272 (899)
Q Consensus 193 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 272 (899)
-+.|++++|.+++++++.|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37788999999999997664 9999999999999999999999763 577799999999999999999999888
Q ss_pred HHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhH
Q 045600 273 FTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTF 352 (899)
Q Consensus 273 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 352 (899)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87774 55678899999999999999999988864 67789999999999999999999999977 367
Q ss_pred HHHHHHhhccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChh
Q 045600 353 VSIIPSCENYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWD 432 (899)
Q Consensus 353 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 432 (899)
..+...+.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ........++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 77777777777777777777666 366777777777777777777766655544 23333445667777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhc--cCCChHHHHHHHHHHHHhCCCC------cHhHHHHHHHHHHcCCChHHH
Q 045600 433 ASLAVFRQMQFAGLNPDAVSIISVLSGCS--KLDDVLLGKSAHAFSLRKGIVS------NLDVLNALLMFYSDGGQFSYA 504 (899)
Q Consensus 433 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A 504 (899)
+|..+++...... +-....|+-+--.++ +.+++.+..+.|. .+.+++| +...|..++-.|...++++.|
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 7777777665432 222233333333333 2333333333332 1122222 334555555555556666555
Q ss_pred HHH
Q 045600 505 FTL 507 (899)
Q Consensus 505 ~~~ 507 (899)
...
T Consensus 302 ~~t 304 (449)
T 1b89_A 302 IIT 304 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.4e-15 Score=170.44 Aligned_cols=371 Identities=11% Similarity=0.006 Sum_probs=197.7
Q ss_pred cHhHHHHHHHHHHcCCChHHHHHHHhhcC-----------C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 045600 484 NLDVLNALLMFYSDGGQFSYAFTLFHRMS-----------T-RSSVSWNTLISRCVQNGAVEEAVILLQRMQKE-----G 546 (899)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 546 (899)
....||.|...+...|+.++|.+.|++.. . ....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34456666666666677776666665432 1 23456777777777777777777777765441 0
Q ss_pred -CCC-CHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhh
Q 045600 547 -VEL-DMVTLISFLPNLNK--NGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISL 622 (899)
Q Consensus 547 -~~p-~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 622 (899)
..+ ...++.....++.. .+++++|...|++..+.... ++..+..+...+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~------------------------ 184 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYR------------------------ 184 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH------------------------
Confidence 111 23344444333333 34566777777766665322 22233333222211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH----hcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISA----GVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
+...++.++|++.+++..+.. +.+...+..+... ....++.++|...++........ +...+..+..
T Consensus 185 -------l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~ 255 (472)
T 4g1t_A 185 -------LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAK 255 (472)
T ss_dssp -------HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred -------hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHH
Confidence 112233334444444444322 1122222222211 12234445555555555444322 3444555555
Q ss_pred HhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHh-------------------CCCHHHHHHHHHHHHHcCCCC-C
Q 045600 699 SYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGL-------------------YGDGEAALELFKQMQLSGVRP-N 755 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p-~ 755 (899)
.|.+.|++++|.+.+++.. .| +..++..+...|.. .+..++|+..+++..+ ..| +
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 333 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNL 333 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTT
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCch
Confidence 6666666666666665554 22 34444444443322 2345778888888877 456 4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc--chHHHHHHH-HhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 045600 756 EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM--EHYACMVDL-LGRTGHLNEAFIFVKKL-PCKPSVSILESLLG 831 (899)
Q Consensus 756 ~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 831 (899)
..++..+...+...|++++|...|++.++....+.. ..+..+... +...|++++|++.+++. ...|+......
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--- 410 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--- 410 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---
Confidence 457888888999999999999999999865544332 223334433 35779999999999877 56666543332
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCcccccC
Q 045600 832 ACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLVGD 899 (899)
Q Consensus 832 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 899 (899)
....+..++++.++.+|+++.++..||.+|..+|++++|++.|++..+.+.......+|+.+
T Consensus 411 ------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 411 ------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp ------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred ------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 23445677888999999999999999999999999999999999999999888888888753
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=2.6e-14 Score=160.66 Aligned_cols=352 Identities=10% Similarity=0.043 Sum_probs=225.1
Q ss_pred CCChHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCChH
Q 045600 498 GGQFSYAFTLFHRMST-RSSVSWNTLISRCVQ----NGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNK----NGNIK 568 (899)
Q Consensus 498 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~ 568 (899)
.+++++|...|++..+ .+...+..+...|.. .++.++|.+.|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444555554444332 234444445555554 555555555555555432 23333334444444 45555
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhhhhHHHHhhcCC-CCChhhHHHHHHHHHH----cCCHHHH
Q 045600 569 QGMVIHGYAIKTGCVADVTFLNALITMYCN----CGSTNDGRLCLLLFQMGD-KREISLWNAIISVYVQ----TNKAKQA 639 (899)
Q Consensus 569 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A 639 (899)
+|...++...+.| +...+..|...|.. .++.++|. ..+++.. ..+...+..+...|.. .++.++|
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~---~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR---EWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 5555555555543 23344444444544 44555554 2222211 1244555556666665 6777777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhcc----cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh----cCCHHHHHH
Q 045600 640 VAFFTELLGAGLEPDNVTVLSIISAGVL----INSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVR----CGNISMARK 711 (899)
Q Consensus 640 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 711 (899)
...|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+...|.. .++.++|.+
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 77777777764 34445455555443 677778887777776654 34455566666666 788888888
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC---CHHHHHHHHHHH
Q 045600 712 LFGSLI-YKDAFSWSVMINGYGLY-----GDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAG---LVEQSKMVFKSM 782 (899)
Q Consensus 712 ~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g---~~~~A~~~~~~m 782 (899)
.|++.. ..++..+..+...|... +++++|++.+++..+.| +...+..+...|...| ++++|.++|++.
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 888876 34666777788888776 88899999888888754 4456666777776656 788888888888
Q ss_pred HHcCCccCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCC
Q 045600 783 VEHGISQKMEHYACMVDLLGR----TGHLNEAFIFVKKLPCKPSVSILESLLGACRI----HGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 783 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 854 (899)
.+.+ +...+..+...|.. .+++++|.+++++.....++..+..+...+.. .+|.++|...++++.+.+|
T Consensus 358 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 358 AAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8654 45677778888887 78888998888887333456777788888877 7889999999999998884
Q ss_pred C---CchhHHHHHHHHHhc
Q 045600 855 E---NPGSYVMLHNIYASA 870 (899)
Q Consensus 855 ~---~~~~~~~l~~~y~~~ 870 (899)
+ ++.+...|+.++...
T Consensus 435 ~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CHHHHHHHHHHHTTSCHHH
T ss_pred CCcCCHHHHHHHHhcCHhH
Confidence 4 777888887776653
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=6.5e-14 Score=157.37 Aligned_cols=352 Identities=14% Similarity=0.051 Sum_probs=291.5
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCC
Q 045600 514 RSSVSWNTLISRCVQ----NGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNK----NGNIKQGMVIHGYAIKTGCVAD 585 (899)
Q Consensus 514 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 585 (899)
.+...+..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..+++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466777777778887 899999999999998864 45667777777877 899999999999998876 5
Q ss_pred hhHHHHHHHHHHh----cCChhhhhhHHHHhhcCC-CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHh
Q 045600 586 VTFLNALITMYCN----CGSTNDGRLCLLLFQMGD-KREISLWNAIISVYVQ----TNKAKQAVAFFTELLGAGLEPDNV 656 (899)
Q Consensus 586 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ 656 (899)
...+..|...|.. .++.++|. ..++... ..++..+..+...|.. .+++++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~---~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESV---KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6677778888887 78999998 4443322 2367778888888887 789999999999999975 566
Q ss_pred HHHHHHHHhcc----cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh----cCCHHHHHHHHHhcC-CCCHHHHHHH
Q 045600 657 TVLSIISAGVL----INSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVR----CGNISMARKLFGSLI-YKDAFSWSVM 727 (899)
Q Consensus 657 t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l 727 (899)
.+..+-..+.. .++.++|..+++...+.| +...+..+...|.. .+++++|.++|++.. ..++..+..+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666 899999999999998876 45677778888876 889999999999887 4567788888
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCccCcchHHHHH
Q 045600 728 INGYGL----YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHA-----GLVEQSKMVFKSMVEHGISQKMEHYACMV 798 (899)
Q Consensus 728 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 798 (899)
...|.. .+++++|++.|++..+.| +...+..|...|... +++++|...|++..+.+ +...+..+.
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 335 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLG 335 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 888888 899999999999998754 556777777788777 89999999999999765 346777888
Q ss_pred HHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--
Q 045600 799 DLLGRTG---HLNEAFIFVKKLPCKPSVSILESLLGACRI----HGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS-- 869 (899)
Q Consensus 799 ~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 869 (899)
..|...| +.++|.+++++.....++..+..+...+.. .++.++|...++++.+.. ++.+++.|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888766 789999999988434678888899999988 899999999999998864 68899999999999
Q ss_pred --cCChHHHHHHHHHHHhCCC
Q 045600 870 --AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 870 --~g~~~eA~~~~~~~~~~~~ 888 (899)
.+++++|.++|++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988764
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.1e-15 Score=157.88 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=171.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhHhcC
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK-HVAVSNALMDSYVRCG 704 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g 704 (899)
+.++|...|++++|+..++. .-.|+..++..+...+...++.+.|.+.++.+...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555543332 123344445555555555555555555555555554333 4445566678889999
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH---HHHHHHHccCCHHHHHHHHHH
Q 045600 705 NISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYL---GVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 705 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~l~~~~~~~g~~~~A~~~~~~ 781 (899)
++++|++.+++ ..+...+..++..+.+.|++++|++.++++.+. .|+..... .++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 567888999999999999999999999999984 57643221 223344466899999999999
Q ss_pred HHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHH-HHHHHHHHHhcCCCCch
Q 045600 782 MVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVEL-GEIISGMLFEMDPENPG 858 (899)
Q Consensus 782 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~ 858 (899)
+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| ++.++..++..+...|+.++ +..+++++++++|+++.
T Consensus 192 ~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 192 MADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 9965 3445688888999999999999999999887 4344 56678888888888888765 57888999999999887
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~ 880 (899)
+.. .+.+.+.+++|..-|
T Consensus 271 ~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 271 IKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHH----HHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHc
Confidence 765 455666666665544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=5e-16 Score=167.79 Aligned_cols=260 Identities=11% Similarity=-0.035 Sum_probs=215.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.... +...+..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 35667888888999999999999999998864 446677888888888999999999999998887644 6778888899
Q ss_pred HhHhcCCHHHHHHHHHhcC--CC-CHHHHHH---------------HHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hh
Q 045600 699 SYVRCGNISMARKLFGSLI--YK-DAFSWSV---------------MINGYGLYGDGEAALELFKQMQLSGVRPN---EI 757 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ 757 (899)
.|...|++++|.+.++++. .| +...+.. .+..+...|++++|++.++++.+ ..|+ ..
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~ 218 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDPTSIDPD 218 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH--HSTTSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH--hCcCcccHH
Confidence 9999999999999998876 22 2222211 23334488999999999999998 4554 67
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 835 (899)
++..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++++ ... .+...+..++..+..
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88899999999999999999999998653 234578999999999999999999999987 333 456788999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 836 HGNVELGEIISGMLFEMDPEN-----------PGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
.|++++|...++++++..|++ +.++..++.+|...|++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999988 889999999999999999999988753
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=3e-16 Score=169.36 Aligned_cols=259 Identities=9% Similarity=-0.060 Sum_probs=215.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.... +...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 55668899999999999999999999999864 456788888999999999999999999999988644 5778999999
Q ss_pred HhHhcCCHHHHHHHHHhcCC--CC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---ChhHHHHH
Q 045600 699 SYVRCGNISMARKLFGSLIY--KD-----------AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP---NEITYLGV 762 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 762 (899)
.|...|++++|.+.++++.. |+ ...+..+...+...|++++|++.++++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 99999999999999999862 21 223345578899999999999999999984 45 46789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHH
Q 045600 763 LSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVE 840 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 840 (899)
...+...|++++|...++++.+.. +.+...|..++.+|...|++++|.+.++++ ...| +...+..++..+...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999653 334588999999999999999999999987 4444 4778999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 841 LGEIISGMLFEMDPE------------NPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 841 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
+|...+++++++.|+ +..++..|+.++...|+.+.|.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999877 477899999999999999988877665
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=8.2e-14 Score=158.25 Aligned_cols=412 Identities=9% Similarity=0.029 Sum_probs=259.9
Q ss_pred CHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHH
Q 045600 449 DAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQFSYAFTLFHRMST--RSSVSWNTLISRC 526 (899)
Q Consensus 449 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 526 (899)
|...+..++.. .+.|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34456666653 5566777777777766654 233455666666666666777777777766654 5555555555322
Q ss_pred -HhcCCHHHHHH----HHHHHHH-cCCCC-CHHHHHHHHHHHhc---------CCChHHHHHHHHHHHHhCCCCChhHHH
Q 045600 527 -VQNGAVEEAVI----LLQRMQK-EGVEL-DMVTLISFLPNLNK---------NGNIKQGMVIHGYAIKTGCVADVTFLN 590 (899)
Q Consensus 527 -~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~ 590 (899)
...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++....+....|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455544443 5554443 24433 23444444443322 455666666666665521111112222
Q ss_pred HHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCCCH------
Q 045600 591 ALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELL------GAG---LEPDN------ 655 (899)
Q Consensus 591 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g---~~p~~------ 655 (899)
.........|. .+...++. .+.+++..|..++.++. +.. +.|+.
T Consensus 170 ~~~~~e~~~~~-------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 170 DYNKYEEGINI-------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHCH-------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHhhch-------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 21111000000 00001110 12345666776666532 111 24431
Q ss_pred --hHHHHHHHHhcc----cCCH----HHHHHHHHHHHHhCCCCChhHHHHHHHHhHh-------cCCHH-------HHHH
Q 045600 656 --VTVLSIISAGVL----INSL----NLTHSLMAFVIRKGLDKHVAVSNALMDSYVR-------CGNIS-------MARK 711 (899)
Q Consensus 656 --~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~ 711 (899)
..|...+.-... .++. ..+..++++.....+. +...|..++..+.+ .|+++ +|.+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 233333322211 1222 3667788888876432 57778888877775 68887 8999
Q ss_pred HHHhcCC---C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045600 712 LFGSLIY---K-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE--ITYLGVLSACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 712 ~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l~~~~~~~g~~~~A~~~~~~m~~~ 785 (899)
++++... | +...|..++..+.+.|++++|.++|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998863 4 578999999999999999999999999998 67753 47888888888999999999999999853
Q ss_pred CCccC-cchHHHHHHH-HhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch---
Q 045600 786 GISQK-MEHYACMVDL-LGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG--- 858 (899)
Q Consensus 786 ~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 858 (899)
.|. ...|...+.. +...|+.++|..++++. ...| ++..|..++..+...|+.+.|..+++++++..|.++.
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 333 2333333322 34689999999999977 3334 5778999999999999999999999999999877665
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 859 -SYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 859 -~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
.+...+......|+.+++.++.+++.+.-+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 777778888889999999999999876544
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.9e-15 Score=160.08 Aligned_cols=262 Identities=10% Similarity=-0.061 Sum_probs=212.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.... +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 44566777788888889999999998888764 345667777778888889999999999888887543 5677888888
Q ss_pred HhHhcCCHHHHHHHHHhcC--CC-CHHHHHHH--------------HH-HHHhCCCHHHHHHHHHHHHHcCCCC-ChhHH
Q 045600 699 SYVRCGNISMARKLFGSLI--YK-DAFSWSVM--------------IN-GYGLYGDGEAALELFKQMQLSGVRP-NEITY 759 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 759 (899)
.+...|++++|.+.++++. .| +...+..+ .. .+...|++++|++.++++.+. .| +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHH
Confidence 8999999999999998876 22 22223222 22 367778999999999999884 45 56788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhC
Q 045600 760 LGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC-KPSVSILESLLGACRIHG 837 (899)
Q Consensus 760 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 837 (899)
..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++++ .. +.+...+..++..+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 889999999999999999999998653 234578889999999999999999999987 33 345778899999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 838 NVELGEIISGMLFEMDPE------------NPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 838 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
++++|...++++++..|+ ++.++..++.+|.+.|++++|..++++..+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999 789999999999999999999999876543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=2.7e-15 Score=154.97 Aligned_cols=247 Identities=11% Similarity=0.087 Sum_probs=202.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 045600 628 SVYVQTNKAKQAVAFFTELLGAGLEPDN--VTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN 705 (899)
Q Consensus 628 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 705 (899)
.-....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. .-.|+...+..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 345567899999988876544 34543 3445677899999999999976644 245577788889999999999
Q ss_pred HHHHHHHHHhcC----CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 045600 706 ISMARKLFGSLI----YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFK 780 (899)
Q Consensus 706 ~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~ 780 (899)
.++|.+.++++. .| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999875 24 566788888999999999999999987 3467789999999999999999999999
Q ss_pred HHHHcCCccCcchH---HHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 781 SMVEHGISQKMEHY---ACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 781 ~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
++.+.. |+.... ..++..+...|++++|...++++ ..+.++..+..++..+...|++++|+..++++++.+|+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999654 554211 22335555669999999999998 44567778999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHH-HHHHHHHHHhCCC
Q 045600 856 NPGSYVMLHNIYASAGRWED-AYRVRSCMKRSRL 888 (899)
Q Consensus 856 ~~~~~~~l~~~y~~~g~~~e-A~~~~~~~~~~~~ 888 (899)
++.++.+++.++...|+.++ |.++++++.+..+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999987 5689999886444
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=187.61 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=127.5
Q ss_pred CCCCchhhhhHHHHHHHhcCChHHHHHHhccCC-------CCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcc
Q 045600 177 GYHQNLVIQTALVDFYAKKGEMLTARLLFDQIP-------LADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVS 249 (899)
Q Consensus 177 g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 249 (899)
....-..+||+||++|||+|++++|.++|++|. .||++|||+||.|||+.|++++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344556799999999999999999999997753 7899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCh-hhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCC-----CCcccHHHHHHH
Q 045600 250 TFSSVIPVCTRLGHF-CFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLE-----KNASVWNAMISA 323 (899)
Q Consensus 250 t~~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~ 323 (899)
||+++|+++|+.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++..++++..+.. +.+.+.+.|.+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 999999999999985 78999999999999999999999999888776555555555444421 123445556666
Q ss_pred HHcCC
Q 045600 324 YTQSK 328 (899)
Q Consensus 324 ~~~~g 328 (899)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 76655
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=5e-15 Score=159.74 Aligned_cols=233 Identities=12% Similarity=-0.015 Sum_probs=197.4
Q ss_pred CHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHH
Q 045600 654 DNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMING 730 (899)
Q Consensus 654 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 730 (899)
+...+..+...+.+.|++++|...++.+.+.... +...+..+...|.+.|++++|.+.|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4455788888899999999999999999988654 67889999999999999999999999987 3468899999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChh-HH----------HHHHHHHHccCCHHHHHHHHHHHHHcCCc-cCcchHHHHH
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRPNEI-TY----------LGVLSACSHAGLVEQSKMVFKSMVEHGIS-QKMEHYACMV 798 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~----------~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~ 798 (899)
|...|++++|++.++++.+ ..|+.. .+ ..+...+...|++++|..+++++.+.... ++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 455432 22 33477899999999999999999965422 1568899999
Q ss_pred HHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 045600 799 DLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDA 876 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA 876 (899)
..|...|++++|.+.++++ . .+.+...|..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3 3445778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 045600 877 YRVRSCMKRSRLK 889 (899)
Q Consensus 877 ~~~~~~~~~~~~~ 889 (899)
++.++++.+..++
T Consensus 301 ~~~~~~al~~~~~ 313 (365)
T 4eqf_A 301 VSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcc
Confidence 9999999875543
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=4.4e-15 Score=160.35 Aligned_cols=256 Identities=11% Similarity=0.009 Sum_probs=204.6
Q ss_pred HHHcCCHHHHHH-HHHHHHHCCC-CC--CHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 045600 630 YVQTNKAKQAVA-FFTELLGAGL-EP--DNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN 705 (899)
Q Consensus 630 ~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 705 (899)
+...|++++|++ .+++...... .| +...+..+...+...|++++|...++.+.+.... +...+..+...+.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 344567888887 7776554321 11 3456778888899999999999999999987644 67788999999999999
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHH---------------HHHHH
Q 045600 706 ISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI-TYLG---------------VLSAC 766 (899)
Q Consensus 706 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------l~~~~ 766 (899)
+++|.+.++++. +.+..+|..+...+...|++++|++.++++.+ ..|+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999886 44788999999999999999999999999998 456433 2221 24444
Q ss_pred HccCCHHHHHHHHHHHHHcCCcc-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHH
Q 045600 767 SHAGLVEQSKMVFKSMVEHGISQ-KMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 767 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
...|++++|..+++++.+..... +...+..++.+|.+.|++++|...++++ ...| +...+..++..+...|++++|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48999999999999999654221 4688899999999999999999999987 3334 5778999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 844 IISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
..++++++..|+++.++..++.+|.+.|++++|++.++++.+..+
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986544
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=3.9e-13 Score=152.67 Aligned_cols=376 Identities=9% Similarity=0.040 Sum_probs=251.5
Q ss_pred CCcHhHHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045600 482 VSNLDVLNALLMFYSDGGQFSYAFTLFHRMST--R-SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFL 558 (899)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 558 (899)
+-+...|..++. +.+.|++++|..+|+++.. | +...|...+..+.+.|++++|..+|++.... .|+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 346678888887 4678899999999988865 3 5667888888888999999999999988874 46766666655
Q ss_pred HHH-hcCCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHH
Q 045600 559 PNL-NKNGNIKQGMV----IHGYAIKT-GCVA-DVTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYV 631 (899)
Q Consensus 559 ~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 631 (899)
... ...|+.+.|.+ +|+..... |..| +...|...+....+.... + .+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~----------------~---------~~~ 141 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV----------------G---------SYA 141 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC----------------S---------STT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc----------------c---------cHH
Confidence 422 34566666554 66655543 4433 345555555544330000 0 001
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-------------hcccCCHHHHHHHHHHHHHh--C-------CCCC
Q 045600 632 QTNKAKQAVAFFTELLGAGLEPDNVTVLSIISA-------------GVLINSLNLTHSLMAFVIRK--G-------LDKH 689 (899)
Q Consensus 632 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-------------~~~~~~~~~a~~~~~~~~~~--g-------~~~~ 689 (899)
..|++++|..+|++..+....+....|...... ....+++..|..++...... + +.|+
T Consensus 142 ~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 142 ENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 133444444444444441000001111111000 01234566676666653321 1 2333
Q ss_pred --------hhHHHHHHHHhHhc----CCH----HHHHHHHHhcC---CCCHHHHHHHHHHHHh-------CCCHH-----
Q 045600 690 --------VAVSNALMDSYVRC----GNI----SMARKLFGSLI---YKDAFSWSVMINGYGL-------YGDGE----- 738 (899)
Q Consensus 690 --------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~---~~~~~~~~~li~~~~~-------~g~~~----- 738 (899)
...|...+...... ++. ++|..+|++.. +.++..|..++..+.+ .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 23555554433221 232 47778888876 3477889988888876 79987
Q ss_pred --HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc--chHHHHHHHHhhcCChHHHHHH
Q 045600 739 --AALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM--EHYACMVDLLGRTGHLNEAFIF 813 (899)
Q Consensus 739 --~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 813 (899)
+|.+++++..+. +.| +...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|.++
T Consensus 302 ~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 302 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 899999998852 456 4668888999999999999999999999963 4543 4788899999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 814 VKKL-PCKPS-VSILESLLGA-CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 814 ~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+++. ...|. ...+...+.. +...|+.+.|..+++++++..|+++..+..++..+.+.|+.++|..+|++..+...
T Consensus 379 ~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 379 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 9988 44443 2333333323 33689999999999999999999999999999999999999999999999988653
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.3e-14 Score=141.27 Aligned_cols=194 Identities=16% Similarity=0.055 Sum_probs=158.4
Q ss_pred CCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHH
Q 045600 687 DKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGV 762 (899)
Q Consensus 687 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 762 (899)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..+++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3466777888889999999999999999886 34678899999999999999999999999998 5784 5688888
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 045600 763 LSACSHA-----------GLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESL 829 (899)
Q Consensus 763 ~~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 829 (899)
..++... |++++|...+++.++. .|+ ...+..+..+|...|++++|.+.+++. ....++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8899999 9999999999999964 344 478889999999999999999999987 222788889999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
+..+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998864
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.2e-13 Score=140.50 Aligned_cols=220 Identities=10% Similarity=0.033 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 045600 621 SLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSY 700 (899)
Q Consensus 621 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 700 (899)
..|..+...+...|++++|+..|++..+.. . +...+..+...+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence 345555556666666666666666655544 3 444455556666
Q ss_pred HhcCCHHHHHHHHHhcCC--C----C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC
Q 045600 701 VRCGNISMARKLFGSLIY--K----D----AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAG 770 (899)
Q Consensus 701 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g 770 (899)
...|++++|.+.+++... | + ...|..+...+...|++++|++.++++.+ +.|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 666666666666665541 1 1 46777788888888888888888888877 45553 3455667
Q ss_pred CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 045600 771 LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGM 848 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 848 (899)
++++|...++++.... +.+...+..++..+...|++++|...++++ . .+.+...+..++..+...|+++.|+..+++
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7888888888887532 223467778888888999999999888877 2 334567788888999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 849 LFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 849 ~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
+++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999987654
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=170.11 Aligned_cols=117 Identities=11% Similarity=0.160 Sum_probs=90.9
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI-------YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLG 761 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 761 (899)
...+|++||++||+.|++++|.++|++|. .||+++||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567778888888888888888876542 57888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC
Q 045600 762 VLSACSHAGL-VEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG 805 (899)
Q Consensus 762 l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 805 (899)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|++++....+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 8888888876 4677888888888888888888887776555543
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.57 E-value=7e-13 Score=140.18 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 515 SSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALIT 594 (899)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 594 (899)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 34456777888888899999999998887742 2356677777777777888888887777766542
Q ss_pred HHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH-HHHH------------
Q 045600 595 MYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVT-VLSI------------ 661 (899)
Q Consensus 595 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------------ 661 (899)
+.+...+..+...+...|++++|...++++.+.. |+... +..+
T Consensus 86 ----------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 86 ----------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------
T ss_pred ----------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHH
Confidence 1233345555666666777777777777777653 32221 1111
Q ss_pred --HH-HhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCC
Q 045600 662 --IS-AGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYG 735 (899)
Q Consensus 662 --l~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 735 (899)
.. .+...|++++|...++.+.+.... +...+..+...+.+.|++++|.+.++++. +.+...|..+...+...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 11 133444444454444444444322 33344444444444444444444444443 123344444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 736 DGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 736 ~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
++++|++.++++.+ ..| +..++..+...+...|++++|.+.++++.
T Consensus 221 ~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 221 RPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444 222 23344444444444444444444444444
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=2.1e-12 Score=144.60 Aligned_cols=391 Identities=11% Similarity=-0.037 Sum_probs=223.2
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhC-CCCcHhHHHHHHH
Q 045600 415 LLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKG-IVSNLDVLNALLM 493 (899)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~ 493 (899)
...||.+...+...|+.++|++.|++..+. ........ -+....+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 446787878888888888888887775431 00000001 1123346677777
Q ss_pred HHHcCCChHHHHHHHhhcCC-----------CChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 045600 494 FYSDGGQFSYAFTLFHRMST-----------RSSVSWNTLISRCVQN--GAVEEAVILLQRMQKEGVELD-MVTLISFLP 559 (899)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 559 (899)
.|...|++++|...+++... ....++..+..++... +++++|++.|++..+ +.|+ ...+..+..
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~--~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE--KKPKNPEFTSGLAI 180 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 78888888888877766531 1345666666666554 569999999999988 4565 344444433
Q ss_pred H---HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH----hcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHH
Q 045600 560 N---LNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYC----NCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQ 632 (899)
Q Consensus 560 ~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 632 (899)
+ +...++.++|.+.++..++.... +...+..+...+. ..++.++|...++......+.+...+..+...|..
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3 45567888899999988876533 3444544444443 44566777744444444455677788888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHH
Q 045600 633 TNKAKQAVAFFTELLGAGLEPD-NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARK 711 (899)
Q Consensus 633 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 711 (899)
.|++++|+..+++..+.. |+ ...+..+..++...+ ....... ...........+..++|..
T Consensus 260 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~---------~~~~~~~-------~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKV---------FQVMNLR-------ENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHH---------HHHHHC-------------CHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH---------HHhhhHH-------HHHHHHHHHHHhhHHHHHH
Confidence 999999999999888753 44 333433333221100 0000000 0001111112234677888
Q ss_pred HHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh--HHHHHHH-HHHccCCHHHHHHHHHHHHHc
Q 045600 712 LFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI--TYLGVLS-ACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 712 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~l~~-~~~~~g~~~~A~~~~~~m~~~ 785 (899)
.+++.. ..+...+..+...|...|++++|++.|++..+....|... .+..+.. .....|++++|+..|++.++
T Consensus 322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~- 400 (472)
T 4g1t_A 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK- 400 (472)
T ss_dssp HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 887765 3355678889999999999999999999999854333221 2333333 34578999999999999885
Q ss_pred CCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 786 GISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 786 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
+.|+........ +.+.+++++. ..+.++.+|..++..+...|++++|+..++++++++|.+|.+...+
T Consensus 401 -i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 401 -INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 345543222222 2233333333 2334566899999999999999999999999999999999888776
Q ss_pred HH
Q 045600 864 HN 865 (899)
Q Consensus 864 ~~ 865 (899)
|+
T Consensus 471 G~ 472 (472)
T 4g1t_A 471 GE 472 (472)
T ss_dssp --
T ss_pred CC
Confidence 63
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.1e-13 Score=137.41 Aligned_cols=239 Identities=10% Similarity=0.011 Sum_probs=168.8
Q ss_pred hhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHH
Q 045600 586 VTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAG--LEPDNVTVLSIIS 663 (899)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~ 663 (899)
...+..+...+...|++++|...++...... .+...|..+...+...|++++|+..+++..+.. ..|+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------ 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH------
Confidence 4677888999999999999985553333333 788899999999999999999999999987742 1112100
Q ss_pred HhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCCHHHHH
Q 045600 664 AGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YKDAFSWSVMINGYGLYGDGEAAL 741 (899)
Q Consensus 664 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 741 (899)
....+..+...+.+.|++++|.+.+++.. .|+. ..+...|++++|+
T Consensus 78 -------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 78 -------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHH
Confidence 02344555566666666666666666654 3332 2344556677777
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 045600 742 ELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC 819 (899)
Q Consensus 742 ~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 819 (899)
+.++++.. ..|+ ...+..+...+...|++++|...++++.+.. +.+...+..++.+|...|++++|...++++ ..
T Consensus 126 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77777776 4553 3466667777777788888888888777543 224567777888888888888888888776 33
Q ss_pred CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHH
Q 045600 820 KP-SVSILESLLGACRIHGNVELGEIISGMLFEMD------PENPGSYVMLHNI 866 (899)
Q Consensus 820 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 866 (899)
.| +...+..++..+...|+.+.|...++++++.. |++..++..+..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 33 46678888888888899999999999998888 7777777766544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=4.7e-13 Score=137.63 Aligned_cols=240 Identities=12% Similarity=-0.049 Sum_probs=191.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC---CCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHH
Q 045600 633 TNKAKQAVAFFTELLGAGLE---PDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMA 709 (899)
Q Consensus 633 ~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 709 (899)
.|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.... +...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 46788888888888876321 13456777777888888999999988888887544 677888999999999999999
Q ss_pred HHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045600 710 RKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHG 786 (899)
Q Consensus 710 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 786 (899)
.+.+++.. +.+...|..+...|...|++++|++.++++.+ ..|+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999887 34678999999999999999999999999998 56776665566666677899999999998888543
Q ss_pred CccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 045600 787 ISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-----VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSY 860 (899)
Q Consensus 787 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 860 (899)
+++...+ .++..+...++.++|.+.+++. ...|. ...+..++..+...|++++|...++++++.+|++...+
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 2333444 4778888889999999999887 33332 46788889999999999999999999999999875544
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 045600 861 VMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 861 ~~l~~~y~~~g~~~eA~~~~ 880 (899)
+.++...|++++|++.+
T Consensus 253 ---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 ---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHhhHHHH
Confidence 77888999999999887
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1e-12 Score=133.10 Aligned_cols=198 Identities=10% Similarity=-0.040 Sum_probs=160.7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSA 765 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~ 765 (899)
...+..+...+...|++++|.+.++++. ..+...|..+...+...|++++|++.++++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4456677777888888888888888775 346778888888888889999999999888873 45 55677888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHH
Q 045600 766 CSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELG 842 (899)
Q Consensus 766 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a 842 (899)
+...|++++|.++++++.+.+..|+ ...+..++.++...|++++|.+.++++ . .+.+...+..++..+...|+.++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8889999999999988876334454 367778888889999999999988877 3 233567788888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
...++++.+..|+++..+..++.+|...|++++|.++++++.+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999875543
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=4.2e-12 Score=130.30 Aligned_cols=224 Identities=9% Similarity=-0.045 Sum_probs=160.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
++.++..+...|...|++++|+..|++..+.+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 44556666667777777777777777776632 2233344455
Q ss_pred HhHh----cCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc-
Q 045600 699 SYVR----CGNISMARKLFGSLI-YKDAFSWSVMINGYGL----YGDGEAALELFKQMQLSGVRPNEITYLGVLSACSH- 768 (899)
Q Consensus 699 ~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~- 768 (899)
.|.. .+++++|.+.|++.. ..++..+..+...|.. .+++++|++.|++..+.+ +...+..+...|..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 666666666666655 3356666777777777 777888888887777753 55677777777777
Q ss_pred ---cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hC
Q 045600 769 ---AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGR----TGHLNEAFIFVKKLPCKPSVSILESLLGACRI----HG 837 (899)
Q Consensus 769 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 837 (899)
.+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++.....++..+..+...+.. .+
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 788888888888777654 34566677777777 78888888888776222355667777778877 88
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 045600 838 NVELGEIISGMLFEMDPENPGSYVMLHNIYAS----AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 838 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~~ 888 (899)
+.++|...++++.+.+| +.++..|+.+|.. .|++++|++++++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888888766 7788888999988 8899999999988887665
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=2.7e-12 Score=127.20 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=162.9
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~ 764 (899)
+...+..+...+...|++++|.+.++++. +.+...|..+...+...|++++|++.++++.+ ..| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 45566777788888888888888888776 34577888888889999999999999999887 345 5567888888
Q ss_pred HHHcc-CCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHH
Q 045600 765 ACSHA-GLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVE 840 (899)
Q Consensus 765 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 840 (899)
.+... |++++|...++++.+.+..|+ ...+..++.++...|++++|.+.++++ ...| +...+..++..+...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88999 999999999999886333343 367788889999999999999998877 3333 4677888888999999999
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 841 LGEIISGMLFEMDP-ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 841 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+..+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999999999 8999999999999999999999999999876444
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=1.3e-12 Score=134.05 Aligned_cols=245 Identities=10% Similarity=-0.006 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCC--hhHHHHHHHH
Q 045600 622 LWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKH--VAVSNALMDS 699 (899)
Q Consensus 622 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~ 699 (899)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445566677777777777777777653 22333566666677777777777777777766432222 2336777777
Q ss_pred hHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHH
Q 045600 700 YVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQS 775 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A 775 (899)
+...|++++|.+.+++.. +.+...|..+...|...|++++|++.+++..+ ..|+ ...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887775 33566778888888888888888888887776 3563 44555555244445588888
Q ss_pred HHHHHHHHHcCCccC-cchHHHHHHHHhhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhhCCHHH
Q 045600 776 KMVFKSMVEHGISQK-MEHYACMVDLLGRTGH---LNEAFIFVKKL----PCKPS------VSILESLLGACRIHGNVEL 841 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~ 841 (899)
.+.++++.+.. |+ ...+..++.++...|+ +++|...++++ ...|+ ...+..+...+...|++++
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888887543 33 4666667777777776 66677666655 22233 1456677788888899999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 842 GEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 842 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
|...++++++++|+++.+...++.+....+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999998888888877665443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=6e-13 Score=133.90 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=143.4
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~ 764 (899)
....+..+...+...|++++|.+.|+++. ..+...+..+...+...|++++|++.++++.+. .| +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 45556667777788888888888888775 335677888888888888888888888888873 45 5567778888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELG 842 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a 842 (899)
.+...|++++|.++++++.+.. +.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8888889999998888888543 234567788888888899999998888877 2 334566788888888889999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+..++++.+..|+++.++..++.+|...|++++|++.++++.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999889999999999999999999999998876544
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=1.6e-12 Score=124.43 Aligned_cols=167 Identities=14% Similarity=0.056 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHH
Q 045600 720 DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMV 798 (899)
Q Consensus 720 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 798 (899)
++..|..+...|...|++++|++.|++..+ +.| +..++..+..++.+.|++++|...++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 566788888888888999999999998887 567 45678888888889999999999998887543 22346777788
Q ss_pred HHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 045600 799 DLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDA 876 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA 876 (899)
..+...+++++|.+.+++. . .+.+...+..++..+...|++++|+..++++++.+|+++.++..+|.+|.++|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999998877 3 3345667888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 045600 877 YRVRSCMKRSRLK 889 (899)
Q Consensus 877 ~~~~~~~~~~~~~ 889 (899)
++.|++..+..++
T Consensus 161 ~~~~~~al~~~p~ 173 (184)
T 3vtx_A 161 VKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCcc
Confidence 9999999876543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=1.9e-12 Score=138.12 Aligned_cols=230 Identities=11% Similarity=0.051 Sum_probs=178.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
+...|+.+...+.+.|++++|+..+++..+. .|+ +...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~----------------------------------~~~a~~~~g~ 139 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRV 139 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc----------------------------------CHHHHHHHHH
Confidence 3456666777777777777777777777664 343 4555677777
Q ss_pred HhHhcCC-HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHH
Q 045600 699 SYVRCGN-ISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVE 773 (899)
Q Consensus 699 ~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~ 773 (899)
.+.+.|+ +++|++.|++++ ..+...|+.+..++...|++++|+..|+++.+ +.| +...|..+..++...|+++
T Consensus 140 ~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 140 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChH
Confidence 7888886 888888888876 34677888888888888999999999999888 677 5568888888888999999
Q ss_pred HHHHHHHHHHHcCCccCcchHHHHHHHHhh-cCChHHH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhhC--CHHHHH
Q 045600 774 QSKMVFKSMVEHGISQKMEHYACMVDLLGR-TGHLNEA-----FIFVKKL-PCKPS-VSILESLLGACRIHG--NVELGE 843 (899)
Q Consensus 774 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~ 843 (899)
+|+..++++++.. +-+...|..+..+|.+ .|..++| ++.+++. ...|+ ...|..+...+...| ++++|+
T Consensus 218 eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 218 NELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp THHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 9999999988543 2244788888888888 6665777 4666665 44454 567888888888877 688999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcC---------ChHHHHHHHHHH-HhCCC
Q 045600 844 IISGMLFEMDPENPGSYVMLHNIYASAG---------RWEDAYRVRSCM-KRSRL 888 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g---------~~~eA~~~~~~~-~~~~~ 888 (899)
..++++ +.+|+++.++..|+++|.+.| .+++|+++++++ .+.++
T Consensus 297 ~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 297 NQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 999888 889999999999999999875 358999999998 66544
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.7e-12 Score=137.02 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045600 586 VTFLNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNK-AKQAVAFFTELLGAGLEPDNVTVLSIISA 664 (899)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 664 (899)
...+..+...+.+.|++++|...+...-...+.+...|+.+...+...|+ +++|+..|++..+.. |+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CC----------
Confidence 46778888899999999999955554455566788999999999999997 999999999998853 43
Q ss_pred hcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHH
Q 045600 665 GVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAAL 741 (899)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 741 (899)
+...|..+..++.+.|++++|+..|++++ ..+...|..+..++...|++++|+
T Consensus 165 ------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 ------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 44455666777777788888888888776 346778888888888889999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHc-cCCHHHH-----HHHHHHHHHcCCccC-cchHHHHHHHHhhcC--ChHHHH
Q 045600 742 ELFKQMQLSGVRP-NEITYLGVLSACSH-AGLVEQS-----KMVFKSMVEHGISQK-MEHYACMVDLLGRTG--HLNEAF 811 (899)
Q Consensus 742 ~~~~~m~~~g~~p-~~~t~~~l~~~~~~-~g~~~~A-----~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~ 811 (899)
+.++++.+ +.| +...|+.+..++.. .|..++| ++.+++.++. .|+ ...|..+..+|...| ++++|+
T Consensus 221 ~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 221 QYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHH
Confidence 99998888 567 45688888888887 5665666 4778887753 344 478888888888888 689999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhhC--------C-HHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 045600 812 IFVKKLPCKPS-VSILESLLGACRIHG--------N-VELGEIISGML-FEMDPENPGSYVMLHNIYASA 870 (899)
Q Consensus 812 ~~~~~~~~~p~-~~~~~~l~~~~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 870 (899)
+.++++...|+ ...+..++..+.+.| + .++|+.+++++ .+++|.+...|..++..+..+
T Consensus 297 ~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 98888754454 456778888887764 2 58999999999 999999999999999888754
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=4.4e-12 Score=130.06 Aligned_cols=228 Identities=9% Similarity=-0.062 Sum_probs=187.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC--CC----HHHHHHHHHH
Q 045600 657 TVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIY--KD----AFSWSVMING 730 (899)
Q Consensus 657 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~ 730 (899)
.+......+...|++++|...++...+.... +...+..+...|...|++++|.+.+++... ++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566788999999999999999987544 555788888999999999999999998863 22 3458899999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChH
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLN 808 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 808 (899)
+...|++++|++.+++..+ ..| +...+..+...+...|++++|...+++..+. .|+ ...+..++..+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 556 4568999999999999999999999998854 444 477777773444556999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCChHH
Q 045600 809 EAFIFVKKL-PCKPS-VSILESLLGACRIHGN---VELGEIISGMLFEMD---PEN-----PGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 809 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~y~~~g~~~e 875 (899)
+|.+.++++ ...|+ ...+..+...+...|+ .+.|+..++++++.. |+. ..++..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 44444 6677788888888888 888999999999886 442 2588899999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 045600 876 AYRVRSCMKRSRLK 889 (899)
Q Consensus 876 A~~~~~~~~~~~~~ 889 (899)
|+++++++.+..+.
T Consensus 240 A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 240 ADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999876554
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.9e-12 Score=128.84 Aligned_cols=214 Identities=10% Similarity=-0.010 Sum_probs=148.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
....|..+...+...|++++|...|+++.+.. |+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHH
Confidence 44556666666666677777766666666532 22 3445566666
Q ss_pred HhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHH
Q 045600 699 SYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQ 774 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~ 774 (899)
.+.+.|++++|.+.++++. ..+...+..+...+...|++++|++.++++.+. .| +...+..+...+...|++++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence 7777777777777777765 336677888888888889999999999888873 44 55678888888889999999
Q ss_pred HHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 045600 775 SKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 775 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 852 (899)
|..+++++.+.. +.+...+..++.++.+.|++++|...++++ . .+.+...+..+...+...|+.++|...++++++.
T Consensus 144 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 144 ALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999888543 234578888999999999999999999887 3 3345678889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcC
Q 045600 853 DPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 853 ~p~~~~~~~~l~~~y~~~g 871 (899)
+|+++.++..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999999988877765544
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=2.1e-11 Score=123.29 Aligned_cols=207 Identities=12% Similarity=0.018 Sum_probs=156.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 045600 620 ISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDS 699 (899)
Q Consensus 620 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 699 (899)
...|..+...+...|++++|...|+++.+.. |+ +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----------------------------------hHHHHHHHHHH
Confidence 4556666666777777777777776666542 21 34455666667
Q ss_pred hHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHH
Q 045600 700 YVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQS 775 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A 775 (899)
|...|++++|.+.++++. ..+...|..+...|...|++++|++.++++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777765 33667788888888888888888888888877445564 45777778888899999999
Q ss_pred HHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 045600 776 KMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMD 853 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 853 (899)
...++++.+.. +.+...+..++.++...|++++|...++++ ... .+...+..+...+...|+.+.|...++++.+..
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 161 KEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999888543 234577888999999999999999999887 333 456677888888899999999999999999999
Q ss_pred CCCchhHHHH
Q 045600 854 PENPGSYVML 863 (899)
Q Consensus 854 p~~~~~~~~l 863 (899)
|+++.....+
T Consensus 240 p~~~~~~~~l 249 (252)
T 2ho1_A 240 PGSLEYQEFQ 249 (252)
T ss_dssp TTSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9988766543
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=7.9e-12 Score=137.96 Aligned_cols=252 Identities=11% Similarity=0.012 Sum_probs=113.9
Q ss_pred HHHHHHcCCChHHHHHHHhhcCC-CChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-
Q 045600 491 LLMFYSDGGQFSYAFTLFHRMST-RSSVSWNTLISRCVQNGAV---EEAVILLQRMQKEGVELDMVTLISFLPNLNKNG- 565 (899)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g- 565 (899)
+...+.+.|++++|.+.|++..+ .+...+..+...|...|+. ++|++.|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 45566778899999999888755 3555666677777777777 8888888888753 3344444544343333
Q ss_pred ----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHhhcCC-CCChhhHHHHHHHHHHcCCHHHHH
Q 045600 566 ----NIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLFQMGD-KREISLWNAIISVYVQTNKAKQAV 640 (899)
Q Consensus 566 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 640 (899)
+.++|...++...+.|... .+..|...|...+..+.+....+.+.... ..++..+..+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 6788888888888866433 45566666666555444432223333222 224455556666666666444443
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhcccC---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhc----CCHHHHHHHH
Q 045600 641 AFFTELLGAGLEPDNVTVLSIISAGVLIN---SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRC----GNISMARKLF 713 (899)
Q Consensus 641 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~ 713 (899)
+......+.-...+...+..+-..+...| +.++|...++...+.|.. +...+..+...|... +++++|.+.|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33222222211122224444444444455 555555555555554432 222222333333322 3455555555
Q ss_pred HhcCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHc
Q 045600 714 GSLIYKDAFSWSVMING-Y--GLYGDGEAALELFKQMQLS 750 (899)
Q Consensus 714 ~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~ 750 (899)
++....++..+..+... + ...+++++|++.|++..+.
T Consensus 241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 44442233344444443 2 2344555555555554443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=2.2e-12 Score=132.60 Aligned_cols=220 Identities=10% Similarity=-0.063 Sum_probs=181.5
Q ss_pred hcccCCHHHHHHHHHHHHHhCCC---CChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHH
Q 045600 665 GVLINSLNLTHSLMAFVIRKGLD---KHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGE 738 (899)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 738 (899)
....|++++|...++.+.+.... .+...+..+...+...|++++|.+.|+++. +.+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 44568899999999999987432 246778889999999999999999999987 346889999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 739 AALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 739 ~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
+|++.++++.+ ..| +...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998 456 5678999999999999999999999999964 355544555556667889999999999766
Q ss_pred -CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 818 -PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPE----NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 818 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
...|+......++..+...++.+.|...++++.+..|. ++..+..++.+|...|++++|++.++++.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 22232222334677778888999999999999988774 378999999999999999999999999987654
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=8.5e-12 Score=137.72 Aligned_cols=340 Identities=12% Similarity=0.021 Sum_probs=222.1
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCCh---HHHHHHHhhcCCCChhhHHHHHHHHHhcC--
Q 045600 456 VLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSDGGQF---SYAFTLFHRMSTRSSVSWNTLISRCVQNG-- 530 (899)
Q Consensus 456 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 530 (899)
+...+.+.|++++|.+++....+.|.. ..+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS---EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---TGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 445566789999999999999887632 3334455566667777 89999998887777777777777666655
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 045600 531 ---AVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNI---KQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTND 604 (899)
Q Consensus 531 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 604 (899)
+.++|+..|++..+.|... .+..+...+...+.. ..+.+.+......|. ......|...|...+.++.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 7889999999998866433 444555555555443 345555555555553 4566677888888886666
Q ss_pred hhh-HHHHhhcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhccc----CCHHHHHH
Q 045600 605 GRL-CLLLFQMGDKREISLWNAIISVYVQTN---KAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLI----NSLNLTHS 676 (899)
Q Consensus 605 a~~-~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----~~~~~a~~ 676 (899)
+.. ...+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+-..+... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 542 224555555566678889999999999 8999999999999988 45555445555555444 78999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHH-h--HhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHH
Q 045600 677 LMAFVIRKGLDKHVAVSNALMDS-Y--VRCGNISMARKLFGSLI-YKDAFSWSVMINGYGLYG-----DGEAALELFKQM 747 (899)
Q Consensus 677 ~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m 747 (899)
+++... .| ++..+..+... | ...+++++|.+.|++.. ..++..+..|...|. .| ++++|++.|++.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 999987 33 55666666666 4 56899999999999887 447778888888887 45 899999999887
Q ss_pred HHcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhh----cCChHHHHHHHHhC
Q 045600 748 QLSGVRPNEITYLGVLSACSH----AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGR----TGHLNEAFIFVKKL 817 (899)
Q Consensus 748 ~~~g~~p~~~t~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 817 (899)
. .-+...+..|...|.. ..++++|..+|++..+.|. ......|..+|.. ..+.++|..++++.
T Consensus 314 a----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 314 V----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp T----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred h----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 6 2255666666666655 3488889988888886553 3455667777654 34677777777766
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.41 E-value=1.8e-11 Score=120.39 Aligned_cols=193 Identities=12% Similarity=0.031 Sum_probs=95.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44556666677777777777777777776643 223344444444455555555555555555544332 3344445555
Q ss_pred HhHhc-----------CCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 045600 699 SYVRC-----------GNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLS 764 (899)
Q Consensus 699 ~~~~~-----------g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 764 (899)
.+.+. |++++|++.+++.. .| +...|..+...+...|++++|++.|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 55555555555544 22 34455555555555555555555555555543 44445555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHh
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
++...|++++|...|+++.+.. +.+...+..++.++.+.|++++|.+.+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555322 11224445555555555555555555544
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=3.7e-11 Score=118.95 Aligned_cols=208 Identities=13% Similarity=0.027 Sum_probs=156.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMD 698 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 698 (899)
+...|..+...+...|++++|...|+++.+.. |+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 45566666677777777777777777666542 22 3344566667
Q ss_pred HhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHH
Q 045600 699 SYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLY-GDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVE 773 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~ 773 (899)
.+...|++++|.+.++++. ..+...+..+...+... |++++|++.++++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777765 33667788888888888 999999999998887444554 457777888888999999
Q ss_pred HHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 045600 774 QSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK--PSVSILESLLGACRIHGNVELGEIISGMLF 850 (899)
Q Consensus 774 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 850 (899)
+|...++++.+.. +.+...+..++.++...|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.
T Consensus 131 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999888543 223577888999999999999999998887 333 455667777777888999999999999999
Q ss_pred hcCCCCchhHHHH
Q 045600 851 EMDPENPGSYVML 863 (899)
Q Consensus 851 ~~~p~~~~~~~~l 863 (899)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 9999988877655
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.8e-12 Score=142.58 Aligned_cols=191 Identities=9% Similarity=-0.037 Sum_probs=164.1
Q ss_pred ChhHHHHHHHHhHhcCCH-HHHHHHHHhcC--C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNI-SMARKLFGSLI--Y-KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 764 (899)
+...+..+...|...|++ ++|++.|++.. . .+...|..+...|...|++++|++.|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 556667777788888888 88888888776 3 3577889999999999999999999999988 5688778888888
Q ss_pred HHHcc---------CCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhc--------CChHHHHHHHHhC-CCCC----C
Q 045600 765 ACSHA---------GLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRT--------GHLNEAFIFVKKL-PCKP----S 822 (899)
Q Consensus 765 ~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p----~ 822 (899)
.+... |++++|.+.+++..+.. +.+...|..++.+|... |++++|.+.+++. ...| +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 89898 99999999999998643 22457888899999988 9999999999987 4455 6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 823 VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
...|..++..+...|++++|...++++++++|+++.++..++.++...|++++|++.+++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 778999999999999999999999999999999999999999999999999999976544
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=4.5e-12 Score=138.95 Aligned_cols=262 Identities=12% Similarity=0.003 Sum_probs=195.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----hHHHHHHHHhcccCCHHHHHHHHHHHHHh----CC-CCChhH
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLGAGLEPD-N----VTVLSIISAGVLINSLNLTHSLMAFVIRK----GL-DKHVAV 692 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~ 692 (899)
+..+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|++++|...+++..+. +. ......
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4445566777888888888888877753 33 2 35666667777788888888888776654 11 123456
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCC-----C----CHHHHHHHHHHHHhCCC-----------------HHHHHHHHHH
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLIY-----K----DAFSWSVMINGYGLYGD-----------------GEAALELFKQ 746 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 746 (899)
+..+...|...|++++|.+.+++... . ...++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 77788888899999999998887651 1 23477888888999999 9999998888
Q ss_pred HHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCc-cC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 045600 747 MQLS----GVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGIS-QK----MEHYACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 747 m~~~----g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
..+. +-.|. ..++..+...+...|++++|...+++..+.... ++ ...+..++.+|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7652 11222 246777888899999999999999988732211 11 13788899999999999999999887
Q ss_pred C----CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCChHHHHHHHHH
Q 045600 817 L----PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPEN------PGSYVMLHNIYASAGRWEDAYRVRSC 882 (899)
Q Consensus 817 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~eA~~~~~~ 882 (899)
. ....+ ...+..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11111 3467788889999999999999999999886543 45889999999999999999999998
Q ss_pred HHhC
Q 045600 883 MKRS 886 (899)
Q Consensus 883 ~~~~ 886 (899)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.4e-11 Score=130.51 Aligned_cols=263 Identities=14% Similarity=0.075 Sum_probs=197.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHhcccCCHHHHHHHHHHHHHh----CCCC-ChhH
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLGAGLEPD-----NVTVLSIISAGVLINSLNLTHSLMAFVIRK----GLDK-HVAV 692 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~ 692 (899)
+......+...|++++|...|+++.+.. |+ ...+..+...+...|+++.|...++...+. +..| ....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444566777888888888888887753 33 245666677778888888888888776543 2222 3556
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHhCCC--------------------HHHHHHH
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLI-----YKD----AFSWSVMINGYGLYGD--------------------GEAALEL 743 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 743 (899)
+..+...|...|++++|.+.+++.. .++ ..++..+...+...|+ +++|++.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 7788888999999999999988765 122 3377888888999999 9999999
Q ss_pred HHHHHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCccC-cchHHHHHHHHhhcCChHHHHHH
Q 045600 744 FKQMQLS----GVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEH----GISQK-MEHYACMVDLLGRTGHLNEAFIF 813 (899)
Q Consensus 744 ~~~m~~~----g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 813 (899)
+++..+. +-.|. ..++..+...+...|++++|...+++..+. +..+. ...+..++..+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8887652 21222 246777888899999999999999988732 11111 24788899999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCChHHHHHH
Q 045600 814 VKKL----PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPEN------PGSYVMLHNIYASAGRWEDAYRV 879 (899)
Q Consensus 814 ~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~eA~~~ 879 (899)
+++. +..++ ...+..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|.++
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876 11122 3457778889999999999999999999886543 44888999999999999999999
Q ss_pred HHHHHhCC
Q 045600 880 RSCMKRSR 887 (899)
Q Consensus 880 ~~~~~~~~ 887 (899)
++++.+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988643
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.4e-11 Score=134.71 Aligned_cols=262 Identities=14% Similarity=0.064 Sum_probs=142.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHhcccCCHHHHHHHHHHHHHh----CCCC-ChhHH
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLGAGLEPD----NVTVLSIISAGVLINSLNLTHSLMAFVIRK----GLDK-HVAVS 693 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~ 693 (899)
+......+...|++++|...|++..+.+ +.+ ...+..+...+...|+++.|...++..... +..| ....+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3444445555556666666665555542 111 123444445555556666666655554332 1111 23345
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCC--------------------HHHHHHHH
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIY-----KD----AFSWSVMINGYGLYGD--------------------GEAALELF 744 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 744 (899)
..+...|...|++++|.+.+++... ++ ..++..+...|...|+ +++|++.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5556666666666666666665541 11 2355566666666666 66666666
Q ss_pred HHHHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-ccC----cchHHHHHHHHhhcCChHHHHHHH
Q 045600 745 KQMQLS----GVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGI-SQK----MEHYACMVDLLGRTGHLNEAFIFV 814 (899)
Q Consensus 745 ~~m~~~----g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 814 (899)
++..+. +-.|. ..++..+...+...|++++|...+++..+... .++ ...+..++..|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 655432 11111 23455555666666777777766666652110 011 135566666666677777766666
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCChHHHHHHH
Q 045600 815 KKL----PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPEN------PGSYVMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 815 ~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~eA~~~~ 880 (899)
++. +..++ ...+..++..+...|++++|...++++++..+.. +.++..++.+|...|++++|++++
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 554 11111 2345556666666677777777776666654332 446666777777777777777766
Q ss_pred HHHHh
Q 045600 881 SCMKR 885 (899)
Q Consensus 881 ~~~~~ 885 (899)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.34 E-value=3.4e-10 Score=115.97 Aligned_cols=196 Identities=13% Similarity=-0.028 Sum_probs=134.8
Q ss_pred ChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHH
Q 045600 619 EISLWNAIISVYVQ----TNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSN 694 (899)
Q Consensus 619 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 694 (899)
+...+..+...|.. .+++++|+..|++..+.+ +...+ .
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~-----------------------------------~ 78 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC-----------------------------------H 78 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH-----------------------------------H
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH-----------------------------------H
Confidence 34455566666677 778888888888887765 33333 3
Q ss_pred HHHHHhHh----cCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 045600 695 ALMDSYVR----CGNISMARKLFGSLI-YKDAFSWSVMINGYGL----YGDGEAALELFKQMQLSGVRPNEITYLGVLSA 765 (899)
Q Consensus 695 ~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 765 (899)
.+...|.. .+++++|.+.|++.. ..+...+..+...|.. .+++++|++.+++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 34444444 566666666666554 2355666667777777 777788888887777754 45566666666
Q ss_pred HHc----cCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 045600 766 CSH----AGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGR----TGHLNEAFIFVKKLPCKPSVSILESLLGACRI-- 835 (899)
Q Consensus 766 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 835 (899)
|.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|.+.+++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 766 778888888888877654 34666777888888 88888888888776222236667777777877
Q ss_pred --hCCHHHHHHHHHHHHhcCCCCch
Q 045600 836 --HGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 836 --~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
.++.++|...++++.+.+|+++.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999888886433
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=9.7e-11 Score=126.81 Aligned_cols=229 Identities=10% Similarity=0.011 Sum_probs=146.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGL-EPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCG 704 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 704 (899)
....+...|++++|+..|++..+.-. .++... ....+..+...|...|
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~a~~~~~lg~~~~~~~ 157 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-------------------------------KAEFFFKMSESYYYMK 157 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH-------------------------------HHHHHHHHHHHHHHcC
Confidence 44456667777777777777765310 122110 1233455555566666
Q ss_pred CHHHHHHHHHhcC-----CCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHcc
Q 045600 705 NISMARKLFGSLI-----YKD-----AFSWSVMINGYGLYGDGEAALELFKQMQLSGV-RPN----EITYLGVLSACSHA 769 (899)
Q Consensus 705 ~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~l~~~~~~~ 769 (899)
++++|.+.+++.. .++ ..+++.+...|...|++++|++.+++..+..- .++ ..++..+...|...
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 6666666655543 111 23566777777777888888777777665210 111 13666777778888
Q ss_pred CCHHHHHHHHHHHHHc----CCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-C---C--CCCH-HHHHHHHHHHHhhC
Q 045600 770 GLVEQSKMVFKSMVEH----GISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-P---C--KPSV-SILESLLGACRIHG 837 (899)
Q Consensus 770 g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~--~p~~-~~~~~l~~~~~~~g 837 (899)
|++++|...+++..+. +..|. ..++..++.+|.+.|++++|.+.+++. . . .|.. ..+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 8888888888877641 22132 366777888888888888888887765 1 1 1211 22455666777777
Q ss_pred C---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 838 N---VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 838 ~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
+ .+.|...+++. ...|....++..++.+|...|++++|.+++++..+.
T Consensus 318 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7 77777777766 333455668889999999999999999999988643
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.31 E-value=1.8e-11 Score=133.77 Aligned_cols=296 Identities=13% Similarity=0.031 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChhhhhhHHH----HhhcCCC--C
Q 045600 548 ELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVAD---VTFLNALITMYCNCGSTNDGRLCLL----LFQMGDK--R 618 (899)
Q Consensus 548 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~~--~ 618 (899)
.+....+......+...|++++|...++.+.+...... ...+..+...|...|++++|...++ +...... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666677778888888888888888877643211 2345555556666666666652221 1111111 1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCC-CCChhHHHHHH
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGL-DKHVAVSNALM 697 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li 697 (899)
...++..+...|...|++++|+..+++..+.. |. .+. ......+..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-----------------------------~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RE-----------------------------LNDKVGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------------------------HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hh-----------------------------cccccchHHHHHHHH
Confidence 22334444445555555555555554443320 00 010 00133556666
Q ss_pred HHhHhcCC--------------------HHHHHHHHHhcC-----CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 698 DSYVRCGN--------------------ISMARKLFGSLI-----YK----DAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 698 ~~~~~~g~--------------------~~~A~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
..|...|+ +++|.+.+++.. .+ ...++..+...|...|++++|++.+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 67777777 777777776653 11 13467778888888899999988888877
Q ss_pred HcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-
Q 045600 749 LSGV-RPN----EITYLGVLSACSHAGLVEQSKMVFKSMVEH----GISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL- 817 (899)
Q Consensus 749 ~~g~-~p~----~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 817 (899)
+..- .++ ..++..+...+...|++++|...+++..+. +..+. ..++..++..|...|++++|.+.+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5310 122 236777778888999999999999887732 21111 357778889999999999999888776
Q ss_pred ---CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhcCChH
Q 045600 818 ---PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDP------ENPGSYVMLHNIYASAGRWE 874 (899)
Q Consensus 818 ---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~y~~~g~~~ 874 (899)
...++ ...+..+...+...|++++|...++++++..+ ....++..++.+|...|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 34677888889999999999999999988743 34668888999999988763
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=2.4e-11 Score=140.17 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHH
Q 045600 720 DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACM 797 (899)
Q Consensus 720 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 797 (899)
+...|+.|...|.+.|++++|++.|++..+ +.|+ ..+|..+..+|.+.|++++|.+.|++.++. .|+ ...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 456788888899999999999999999888 6785 568888888999999999999999998854 354 4788899
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 045600 798 VDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 798 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~e 875 (899)
+.+|.+.|++++|++.+++. ...|+ ...+..++..+...|++++|+..++++++++|+++.++..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 44554 66789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 045600 876 AYRVRSCMKRS 886 (899)
Q Consensus 876 A~~~~~~~~~~ 886 (899)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=4.5e-11 Score=114.10 Aligned_cols=169 Identities=11% Similarity=0.010 Sum_probs=110.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHh
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLG 802 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 802 (899)
|..+...+...|++++|++.++++.+ ..| +...+..+...+...|++++|..+++++.+.. +.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 33344444444555555555444433 222 33344444445555555555555555554322 223355556666666
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 045600 803 RTGHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVR 880 (899)
Q Consensus 803 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~ 880 (899)
..|++++|.+.++++ ..+.+...+..++..+...|++++|...++++.+..|+++.++..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 223455667778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCCcc
Q 045600 881 SCMKRSRLKKVPGFS 895 (899)
Q Consensus 881 ~~~~~~~~~~~~~~~ 895 (899)
+++.+..+...+..+
T Consensus 168 ~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 168 KKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHCCCGGGG
T ss_pred HHHHHcCCCchhhHh
Confidence 998876655444433
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=6.3e-12 Score=131.72 Aligned_cols=238 Identities=13% Similarity=0.071 Sum_probs=132.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHh------C
Q 045600 619 EISLWNAIISVYVQTNKAKQAVAFFTELLGA-------GLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRK------G 685 (899)
Q Consensus 619 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g 685 (899)
...++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++...+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888899999999999999888763 11112233333444444444444444444443332 0
Q ss_pred CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-hhH
Q 045600 686 LDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLS------GVRPN-EIT 758 (899)
Q Consensus 686 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 758 (899)
-.| ....++..+...|...|++++|++.++++.+. +-.|+ ...
T Consensus 106 ~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 106 DHP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp TCH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCh------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 001 01234555566666666666666666665543 12232 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc------CCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC---------CC
Q 045600 759 YLGVLSACSHAGLVEQSKMVFKSMVEH------GISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PC---------KP 821 (899)
Q Consensus 759 ~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---------~p 821 (899)
+..+...+...|++++|.++++++.+. +..|. ...+..++.+|...|++++|.+.++++ .. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 555666666666777766666666532 11222 245666666777777777776666554 10 11
Q ss_pred C-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 822 S-------VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 822 ~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
. ...+......+...+.+..+...++.+....|.++.++..++.+|.+.|++++|++++++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1112223344455666777777888888888999999999999999999999999999998753
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=1.2e-10 Score=111.19 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=142.8
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~ 764 (899)
+..+|..+...|.+.|++++|++.|++.. +.++.+|..+...|...|++++|++.+++... ..| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 56788899999999999999999999887 34778899999999999999999999999987 456 4457777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELG 842 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 842 (899)
.+...++++.|...+++..+.. +.+...+..++.+|.+.|++++|++.+++. ...| +...+..++..+...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8999999999999999988543 234578888999999999999999999987 4444 567889999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 045600 843 EIISGMLFEMDPENP 857 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~ 857 (899)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=4.5e-10 Score=117.23 Aligned_cols=215 Identities=11% Similarity=-0.000 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHhc-------ccCCH-------HHHHHHHHHHHHh-CCCCChhHHHHHHHHhH
Q 045600 637 KQAVAFFTELLGAGLEPDNVTVLSIISAGV-------LINSL-------NLTHSLMAFVIRK-GLDKHVAVSNALMDSYV 701 (899)
Q Consensus 637 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~ 701 (899)
++|..+|++..... +-+...|..+...+. ..|++ ++|..++++.++. .. -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 56667777766642 223334444443332 12443 4444444444442 21 13334444444444
Q ss_pred hcCCHHHHHHHHHhcC--CC-CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH-HccCCHHHH
Q 045600 702 RCGNISMARKLFGSLI--YK-DAF-SWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSAC-SHAGLVEQS 775 (899)
Q Consensus 702 ~~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~-~~~g~~~~A 775 (899)
+.|++++|.++|++.. .| +.. .|..++..+.+.|++++|.++|++..+ ..|+ ...|....... ...|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555554443 12 122 444444444444555555555555444 2221 12222111111 113455555
Q ss_pred HHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 045600 776 KMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P---CKP--SVSILESLLGACRIHGNVELGEIISGML 849 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 849 (899)
..+|++.++.. +.+...|..++..+.+.|+.++|..++++. . ..| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555444221 112244444444444445555555444444 1 122 1234444444444445555555555555
Q ss_pred HhcCCCC
Q 045600 850 FEMDPEN 856 (899)
Q Consensus 850 ~~~~p~~ 856 (899)
.+..|++
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 5444443
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=8.4e-11 Score=130.60 Aligned_cols=180 Identities=11% Similarity=-0.000 Sum_probs=157.9
Q ss_pred CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHH
Q 045600 705 NISMARKLFGSLI---YKDAFSWSVMINGYGLYGDG-EAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVF 779 (899)
Q Consensus 705 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~ 779 (899)
+++++.+.+++.. ..+...|..+...+...|++ ++|++.|++..+ ..|+ ...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666654 34678899999999999999 999999999998 5674 678999999999999999999999
Q ss_pred HHHHHcCCccCcchHHHHHHHHhhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh--------CCHH
Q 045600 780 KSMVEHGISQKMEHYACMVDLLGRT---------GHLNEAFIFVKKL-PCKP-SVSILESLLGACRIH--------GNVE 840 (899)
Q Consensus 780 ~~m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 840 (899)
++..+. .|+...+..+..+|... |++++|.+.+++. ...| +...|..++..+... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999954 57778899999999999 9999999999987 4444 567889999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 841 LGEIISGMLFEMDP---ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 841 ~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+|+..++++++++| +++.++..++.+|...|++++|++.|+++.+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999987544
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=2.1e-10 Score=113.90 Aligned_cols=189 Identities=11% Similarity=-0.021 Sum_probs=98.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcC---C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLI---Y-KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLS 764 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~ 764 (899)
+..+......+.+.|++++|.+.|++.. + ++...+..+..++...|++++|++.+++..+ ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3455555555666666666666666554 2 4455555555566666666666666666655 44533 34555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccC-c-------chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQK-M-------EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS---VSILESLLGA 832 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 832 (899)
++...|++++|...+++..+.. |+ . ..|..+...+...|++++|.+.++++ ...|+ ...+..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5666666666666666655322 22 1 23444555555555555555555544 33443 2234444444
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 833 CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
+... +...++++..+.+.++..+. .......|.+++|+..+++..+..++
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4322 22233444444444433322 22233344459999999999876554
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=3.7e-08 Score=112.22 Aligned_cols=216 Identities=11% Similarity=-0.013 Sum_probs=113.0
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHH-HHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC
Q 045600 639 AVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTH-SLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI 717 (899)
Q Consensus 639 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 717 (899)
+..+|++....- +-....|.....-+...|+.+.|. .+++.....- +.+...+-..+...-+.|++++|.++|+++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445555555431 223444444444444555666664 6666665432 2244445555666666666666666666654
Q ss_pred C-------------CC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc-cCC
Q 045600 718 Y-------------KD------------AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSH-AGL 771 (899)
Q Consensus 718 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~-~g~ 771 (899)
. |+ ...|...+....+.|+.+.|.++|++..+.-..+....|...+..-.+ .++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 2 21 124556666666666666666666666653000111222222221122 234
Q ss_pred HHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhhCCHHHHHHHH
Q 045600 772 VEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP----SVSILESLLGACRIHGNVELGEIIS 846 (899)
Q Consensus 772 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~ 846 (899)
.+.|..+|+..++. .+.+...+...++.+...|+.+.|..+|++. ...| ....|..++..-.+.|+.+.+..+.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666643 2223344455566556666666666666665 2222 1234666666666666666666666
Q ss_pred HHHHhcCCCCc
Q 045600 847 GMLFEMDPENP 857 (899)
Q Consensus 847 ~~~~~~~p~~~ 857 (899)
+++.+..|+++
T Consensus 565 ~R~~~~~P~~~ 575 (679)
T 4e6h_A 565 KRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHSTTCC
T ss_pred HHHHHhCCCCc
Confidence 66666666653
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.22 E-value=3.5e-10 Score=119.67 Aligned_cols=275 Identities=13% Similarity=0.033 Sum_probs=169.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 045600 519 WNTLISRCVQNGAVEEAVILLQRMQKEGVELD-----MVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALI 593 (899)
Q Consensus 519 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 593 (899)
+......+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...++...+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 344556777888888888888888774 333 2456667777777788888877777654320
Q ss_pred HHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHhcccCCHH
Q 045600 594 TMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAFFTELLGAGL-EPDNVTVLSIISAGVLINSLN 672 (899)
Q Consensus 594 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~ 672 (899)
...++. .....++..+...+...|++++|...+++..+... .++...
T Consensus 74 ---~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------- 121 (338)
T 3ro2_A 74 ---RTIGDQ--------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------- 121 (338)
T ss_dssp ---HHHTCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------
T ss_pred ---hccccc--------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------------
Confidence 000000 01233456667777777888888887777654210 011100
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC--------------------HHHHHHHHHhcCC-----C----CHHH
Q 045600 673 LTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN--------------------ISMARKLFGSLIY-----K----DAFS 723 (899)
Q Consensus 673 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~ 723 (899)
....+..+...+...|+ +++|.+.+++... + ....
T Consensus 122 ----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (338)
T 3ro2_A 122 ----------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11233444444555555 5555555544320 1 1335
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCccC-cch
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGV-RPN----EITYLGVLSACSHAGLVEQSKMVFKSMVEH----GISQK-MEH 793 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~ 793 (899)
+..+...+...|++++|++.+++..+... .++ ..++..+...+...|++++|..++++..+. +..+. ...
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 66677777778888888888777765210 111 236677777788888888888888877622 11111 356
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL-P---CKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
+..++.+|...|++++|...++++ . ..++ ...+..+...+...|++++|...+++++++.+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777888888889999988888766 1 1111 335677888889999999999999999888764
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.20 E-value=2.6e-10 Score=124.87 Aligned_cols=273 Identities=14% Similarity=0.052 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChhhhhhHHHH----hhcCC--CCChhh
Q 045600 552 VTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVAD---VTFLNALITMYCNCGSTNDGRLCLLL----FQMGD--KREISL 622 (899)
Q Consensus 552 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~--~~~~~~ 622 (899)
..+..+...+...|++++|...++.+.+...... ...+..+...|...|++++|...++. ..... ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677788888888888888877643211 13455555666666666666522211 11111 112334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCC-CCChhHHHHHHHHhH
Q 045600 623 WNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGL-DKHVAVSNALMDSYV 701 (899)
Q Consensus 623 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~ 701 (899)
+..+...|...|++++|...+++..+.. ...+- ......+..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 4444455555555555555554443310 00010 112335566667777
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-----C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC
Q 045600 702 RCGN-----------------ISMARKLFGSLIY-----K----DAFSWSVMINGYGLYGDGEAALELFKQMQLSGV-RP 754 (899)
Q Consensus 702 ~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 754 (899)
..|+ +++|.+.+++... . ....+..+...|...|++++|++.+++..+..- .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 7777777766531 1 234677788888888999999888888776311 01
Q ss_pred C----hhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----Ccc-CcchHHHHHHHHhhcCChHHHHHHHHhC-C---CCC
Q 045600 755 N----EITYLGVLSACSHAGLVEQSKMVFKSMVEHG----ISQ-KMEHYACMVDLLGRTGHLNEAFIFVKKL-P---CKP 821 (899)
Q Consensus 755 ~----~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p 821 (899)
+ ..++..+...+...|++++|...+++..+.. ..+ ....+..++.+|...|++++|.+.+++. . ..+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 1267777888889999999999998877321 111 1366778888999999999999888876 1 111
Q ss_pred C----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 822 S----VSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 822 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
+ ...+..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2 235777888889999999999999999988764
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=9.2e-10 Score=109.20 Aligned_cols=205 Identities=12% Similarity=0.071 Sum_probs=162.7
Q ss_pred CCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHH
Q 045600 653 PDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMIN 729 (899)
Q Consensus 653 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~ 729 (899)
.|...+...-..+...|++++|...++...+....++...+..+...+...|++++|.+.+++.. .| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677778888899999999999999999998875677777779999999999999999999987 34 5678999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCC-h-------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC---cchHHHHH
Q 045600 730 GYGLYGDGEAALELFKQMQLSGVRPN-E-------ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK---MEHYACMV 798 (899)
Q Consensus 730 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~ 798 (899)
.|...|++++|++.+++..+ ..|+ . ..|..+...+...|++++|.+.|+++++ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 99999999999999999998 5674 3 3477777788999999999999999984 4555 47788888
Q ss_pred HHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 799 DLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
.+|...|+. .++++ . ...+...+.... ....+.+++|...++++++++|+++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888776653 22222 0 112233333332 345567899999999999999999999888877654
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.1e-07 Score=108.18 Aligned_cols=216 Identities=6% Similarity=-0.131 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHH-HHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 673 LTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMAR-KLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 673 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
.+..++++....-.. ....|-..+..+.+.|+.++|. +++++.. +.+...|-.++....+.|++++|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344556665554222 5566666677777777777775 7777765 3355567777777777888888888888777
Q ss_pred HcC---------CCCC------------hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC-C
Q 045600 749 LSG---------VRPN------------EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG-H 806 (899)
Q Consensus 749 ~~g---------~~p~------------~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~ 806 (899)
+.. -.|+ ...|...+....+.|..+.|..+|+++++.-.......|...+..-.+.| +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 531 0132 22566666666777778888888888775411122344544444444444 4
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCChHHHHHHHH
Q 045600 807 LNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPE---NPGSYVMLHNIYASAGRWEDAYRVRS 881 (899)
Q Consensus 807 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~eA~~~~~ 881 (899)
.+.|..+|++. ....+...|..++......|+.+.|..+++++++..|+ ....+......-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77888887766 33345556677777777778888888888888877763 34556666666667788888888888
Q ss_pred HHHhCCCc
Q 045600 882 CMKRSRLK 889 (899)
Q Consensus 882 ~~~~~~~~ 889 (899)
++.+.-++
T Consensus 566 R~~~~~P~ 573 (679)
T 4e6h_A 566 RFFEKFPE 573 (679)
T ss_dssp HHHHHSTT
T ss_pred HHHHhCCC
Confidence 88765543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1e-08 Score=110.39 Aligned_cols=259 Identities=13% Similarity=0.003 Sum_probs=168.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHhcccCCHHHHHHHHHHHHHhCC-CCC----hhHHHHHH
Q 045600 627 ISVYVQTNKAKQAVAFFTELLGAGLEPDNV----TVLSIISAGVLINSLNLTHSLMAFVIRKGL-DKH----VAVSNALM 697 (899)
Q Consensus 627 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li 697 (899)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++...... ..+ ...+..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334556677777777777766643222221 234444556667777777777777665411 111 22345666
Q ss_pred HHhHhcCCHHHHHHHHHhcCC----------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C--ChhHHHHH
Q 045600 698 DSYVRCGNISMARKLFGSLIY----------K-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVR--P--NEITYLGV 762 (899)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~l 762 (899)
..+...|++++|.+.+++... | ....+..+...+...|++++|...+++..+..-. | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777888888888888876641 1 1235666777888888899888888887763221 1 12356677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCccCc-chHH-----HHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 045600 763 LSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYA-----CMVDLLGRTGHLNEAFIFVKKL-PCKPS-----VSILESLL 830 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~ 830 (899)
...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 77888889999999888888743212211 1121 2334467888999998888877 22221 22456677
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 831 GACRIHGNVELGEIISGMLFEMDPEN------PGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 831 ~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+...|+.++|...++++.+..+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77888899999988888887764321 23677788888899999999888887654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=2.8e-09 Score=114.93 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=127.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcC-----CCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-Ch
Q 045600 692 VSNALMDSYVRCGNISMARKLFGSLI-----YKD-----AFSWSVMINGYGLYGDGEAALELFKQMQLS----GVRP-NE 756 (899)
Q Consensus 692 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 756 (899)
.+..+...|...|++++|.+.+++.. .++ ..+++.+...|...|++++|++.+++..+. +-.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44555666666666666666665543 111 335667777777888888888777776652 1111 12
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCccCcchHHHHHHHHhhcCChHHHHHHHHhC----CC--CCCH-HH
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEH----GISQKMEHYACMVDLLGRTGHLNEAFIFVKKL----PC--KPSV-SI 825 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~~-~~ 825 (899)
.++..+...|...|++++|...+++..+. +.+....++..++.+|.+.|++++|...+++. .. .|.. ..
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35666777788888888888888877741 22222467777888888888888888888765 11 2222 23
Q ss_pred HHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 826 LESLLGACRIHGN---VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 826 ~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+..+...+...++ .+.|...+++. ...|.....+..++.+|...|++++|.+++++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555666677 67777766652 22344566778899999999999999999998764
No 78
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=4.3e-09 Score=109.78 Aligned_cols=215 Identities=9% Similarity=0.046 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHhH-------hcCCH-------HHHHHHHHhcCC---C-CHHHHHHHHHHHHh
Q 045600 672 NLTHSLMAFVIRKGLDKHVAVSNALMDSYV-------RCGNI-------SMARKLFGSLIY---K-DAFSWSVMINGYGL 733 (899)
Q Consensus 672 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 733 (899)
++|...|+......+. +...|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677778777776433 5666666666654 34775 888888887753 3 55688888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCh-h-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHh-hcCChHHH
Q 045600 734 YGDGEAALELFKQMQLSGVRPNE-I-TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLG-RTGHLNEA 810 (899)
Q Consensus 734 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 810 (899)
.|++++|.++|+++.+ +.|+. . .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999998887 66743 3 68888888888889999999998888543 223344443333322 36888999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 811 FIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEM---DPE-NPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 811 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
.+++++. . .+.+...|..++..+...|+.+.|..+++++++. .|+ ....+..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888877 2 2335667888888888889999999999998885 343 56678888888888899999998888888
Q ss_pred hCCCcc
Q 045600 885 RSRLKK 890 (899)
Q Consensus 885 ~~~~~~ 890 (899)
+..++.
T Consensus 269 ~~~p~~ 274 (308)
T 2ond_A 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHcccc
Confidence 766543
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=7.9e-11 Score=123.22 Aligned_cols=243 Identities=14% Similarity=0.076 Sum_probs=146.1
Q ss_pred ChhHHHHHHHHHHhcCChhhhhhHHHHhhc--------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 045600 585 DVTFLNALITMYCNCGSTNDGRLCLLLFQM--------GDKREISLWNAIISVYVQTNKAKQAVAFFTELLGA------G 650 (899)
Q Consensus 585 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 650 (899)
...++..+...+...|++++|...++.... ........+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467788899999999999999844422222 12235667888999999999999999999998864 2
Q ss_pred CCC-CHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhc--C--CCCHHHHH
Q 045600 651 LEP-DNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSL--I--YKDAFSWS 725 (899)
Q Consensus 651 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~ 725 (899)
-.| ....+..+...+...|++++|...++...+.. ... . ......+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHH
Confidence 122 23345455555555666666665555544320 000 0 01233566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCccCc
Q 045600 726 VMINGYGLYGDGEAALELFKQMQLS------GVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEH-------GISQKM 791 (899)
Q Consensus 726 ~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~ 791 (899)
.+...+...|++++|++.++++.+. +..|+ ..++..+...+...|++++|..+++++.+. ...+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 6666777777777777777776653 22332 246667777778888888888888777642 122222
Q ss_pred -chHHH------HHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 792 -EHYAC------MVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 792 -~~~~~------l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
..+.. +...+...+.+.+|...+++. ...| ....+..++..+...|++++|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 22222 223333445555555566655 2333 3446788889999999999999999999988775
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=2.5e-09 Score=115.62 Aligned_cols=233 Identities=7% Similarity=-0.003 Sum_probs=161.5
Q ss_pred HHHHHHhcCChhhhhhHHHHhhcC----CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHH
Q 045600 592 LITMYCNCGSTNDGRLCLLLFQMG----DKR--EISLWNAIISVYVQTNKAKQAVAFFTELLGAGL-EPDNVTVLSIISA 664 (899)
Q Consensus 592 l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a 664 (899)
....+...|++++|...++..... ..+ ...+|..+...|...|++++|+..+++..+.-. .++...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI------- 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-------
Confidence 344556667777776333222111 111 345677888888889999999888888765310 011000
Q ss_pred hcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHhCC
Q 045600 665 GVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI-----YKD----AFSWSVMINGYGLYG 735 (899)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g 735 (899)
....+++.+...|...|++++|.+.+++.. .++ ..++..+...|...|
T Consensus 182 -----------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 182 -----------------------RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 012345666777777888888887777664 122 237788888999999
Q ss_pred CHHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCccCcchHHHHHHHHhhcCC
Q 045600 736 DGEAALELFKQMQLS----GVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEH----GISQKMEHYACMVDLLGRTGH 806 (899)
Q Consensus 736 ~~~~A~~~~~~m~~~----g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~ 806 (899)
++++|++.+++..+. +..|+ ..++..+...+...|++++|...+++..+. +-+.....+..+...+...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999888762 23243 457888888999999999999999988732 111122446678889999999
Q ss_pred ---hHHHHHHHHhCCCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 045600 807 ---LNEAFIFVKKLPCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 807 ---~~~A~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 854 (899)
+++|+.++++.+..|+.. .+..++..+...|++++|...++++++...
T Consensus 319 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 319 EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 899999999985555433 567788999999999999999999988654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=2.4e-09 Score=101.84 Aligned_cols=167 Identities=13% Similarity=-0.030 Sum_probs=143.2
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 045600 691 AVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSAC 766 (899)
Q Consensus 691 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~ 766 (899)
..+..+...+...|++++|.+.++++. +.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 456677888899999999999999987 346788999999999999999999999999884 55 567888888899
Q ss_pred HccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHH
Q 045600 767 SHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 767 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
...|++++|.++++++.+.. +.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|+.++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998653 335578888999999999999999999887 2 33456788899999999999999999
Q ss_pred HHHHHHhcCCCCchhH
Q 045600 845 ISGMLFEMDPENPGSY 860 (899)
Q Consensus 845 ~~~~~~~~~p~~~~~~ 860 (899)
.++++++..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999998876543
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=1.5e-09 Score=111.53 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=155.5
Q ss_pred cccCCHHHHHHHHHHHHHh-----C--CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-------C----CHHHHHHH
Q 045600 666 VLINSLNLTHSLMAFVIRK-----G--LDKHVAVSNALMDSYVRCGNISMARKLFGSLIY-------K----DAFSWSVM 727 (899)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 727 (899)
...|+++.|...+++..+. + ......++..+...|...|++++|.+.+++... + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888888776653 1 122466788889999999999999999988751 1 24578889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCccC-cch
Q 045600 728 INGYGLYGDGEAALELFKQMQLS------GVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEH------GISQK-MEH 793 (899)
Q Consensus 728 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~ 793 (899)
...|...|++++|++.+++..+. .-.|+ ..++..+...+...|++++|..+++++.+. +..|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11343 457888888999999999999999998854 11232 367
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhhCC------HHHHHHHHHHHHhcCCCC
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL-P---------CKPSV-SILESLLGACRIHGN------VELGEIISGMLFEMDPEN 856 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 856 (899)
+..++.+|...|++++|.+.++++ . ..+.. ..+..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999998776 1 12222 233333333333222 333444444444445667
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 857 PGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 857 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999999875
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=5.2e-09 Score=103.35 Aligned_cols=184 Identities=12% Similarity=-0.006 Sum_probs=122.4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh----HH
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLI--YKD----AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEI----TY 759 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 759 (899)
...+..+...+.+.|++++|.+.|+++. .|+ ...+..+..+|.+.|++++|++.|+++.+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 3445556667778888888888888776 232 24667777888888888888888888877 445432 34
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 045600 760 LGVLSACSH------------------AGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKLPCK 820 (899)
Q Consensus 760 ~~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 820 (899)
..+..++.. .|++++|...|+++++. .|+. ..+...... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHHHHH---------
Confidence 444444443 35566666666666532 2332 111111110 0000000
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 045600 821 PSVSILESLLGACRIHGNVELGEIISGMLFEMDPENP---GSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVP 892 (899)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 892 (899)
......++..+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...+++.+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 00113456778899999999999999999999986 67999999999999999999999999987776554
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=1.4e-08 Score=102.20 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcc-----CcchHHHHH
Q 045600 725 SVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQ-----KMEHYACMV 798 (899)
Q Consensus 725 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~l~ 798 (899)
..+..++...|++++|++++++....|-.+ +...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...++
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence 344444444444444444444443322111 1223444444444444444444444444422 22 122222222
Q ss_pred HH--HhhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc----------CCCCchhHHHH
Q 045600 799 DL--LGRTG--HLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFEM----------DPENPGSYVML 863 (899)
Q Consensus 799 ~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~~~l 863 (899)
.+ ....| ++++|+.+|+++ ...|+......++.++...|++++|+..++.+.+. +|+|+.++.++
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 22 11122 444454444444 22233222222222444445555555554444443 24444444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 045600 864 HNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 864 ~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+.+....|+ +|.++++++++
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHhCh--HHHHHHHHHHH
Confidence 444444444 44444444443
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.02 E-value=2.6e-08 Score=107.37 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=117.2
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC-Chh
Q 045600 691 AVSNALMDSYVRCGNISMARKLFGSLIY-----KD----AFSWSVMINGYGLYGDGEAALELFKQMQLSG---VRP-NEI 757 (899)
Q Consensus 691 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p-~~~ 757 (899)
.+++.+...|...|++++|.+.+++... ++ ..+++.+...|...|++++|++.+++..+.. ..| ...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 3456666777777777777777766541 22 2467778888888889999988888877610 123 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCc---cC-cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCHH-HHHHH
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGIS---QK-MEHYACMVDLLGRTGH---LNEAFIFVKKLPCKPSVS-ILESL 829 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l 829 (899)
++..+...+.+.|++++|...+++..+.... |. ...+..+...+...|+ +++|+..+++....|+.. .+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7778888899999999999999988843221 11 2445666677778888 888999998875444433 46678
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcC
Q 045600 830 LGACRIHGNVELGEIISGMLFEMD 853 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~ 853 (899)
+..+...|++++|...++++++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888999999999999999887653
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.4e-09 Score=110.62 Aligned_cols=199 Identities=10% Similarity=-0.038 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCCHHHH
Q 045600 670 SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIY-----KD----AFSWSVMINGYGLYGDGEAA 740 (899)
Q Consensus 670 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 740 (899)
++++|...+... ...|...|++++|.+.|.+... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777766554 4467788999999888887651 12 45788899999999999999
Q ss_pred HHHHHHHHHcCCCC---C----hhHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCc----cC-cchHHHHHHHHhhcCCh
Q 045600 741 LELFKQMQLSGVRP---N----EITYLGVLSACSHA-GLVEQSKMVFKSMVEHGIS----QK-MEHYACMVDLLGRTGHL 807 (899)
Q Consensus 741 ~~~~~~m~~~g~~p---~----~~t~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~----p~-~~~~~~l~~~~~~~g~~ 807 (899)
+..+++..+. .| + ..++..+..+|... |++++|...|++.++.... +. ..++..++..|.+.|++
T Consensus 97 ~~~~~~Al~l--~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQI--FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999888763 22 1 24677888888886 9999999999988743211 11 25678889999999999
Q ss_pred HHHHHHHHhC-CCCCCH--------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcC
Q 045600 808 NEAFIFVKKL-PCKPSV--------SILESLLGACRIHGNVELGEIISGMLFEMDPENPGS-----YVMLHNIYA--SAG 871 (899)
Q Consensus 808 ~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g 871 (899)
++|++.+++. ...|+. ..+..++..+...|+++.|+..++++++++|+.+.. +..++.+|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999876 222221 146677788888999999999999999999986553 455666665 457
Q ss_pred ChHHHHHHHHHHHh
Q 045600 872 RWEDAYRVRSCMKR 885 (899)
Q Consensus 872 ~~~eA~~~~~~~~~ 885 (899)
++++|+..|+++..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 89999998877653
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=9.1e-10 Score=100.69 Aligned_cols=141 Identities=9% Similarity=-0.001 Sum_probs=99.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCCh
Q 045600 729 NGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHL 807 (899)
Q Consensus 729 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 807 (899)
..+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|.+.|++.++.. +-+...|..++.+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 334455666667666666544 3443 2345556666777777777777777776432 22347777788888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 045600 808 NEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEI-ISGMLFEMDPENPGSYVMLHNIYASAGR 872 (899)
Q Consensus 808 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 872 (899)
++|...+++. ...| ++..+..++..+...|+.++|.. .++++++++|+++.++..++.++..+|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4445 45677888888888888766554 5699999999999999999999988885
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=3.5e-09 Score=122.22 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=135.5
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-EITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~ 764 (899)
+...++.|...|.+.|++++|++.|++.. .| +...|+.+..+|.+.|++++|++.|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45677888888999999999999998876 33 577888999999999999999999999888 6774 568888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVEL 841 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 841 (899)
+|...|++++|.+.|++.++. .|+ ...|..++.+|.+.|++++|++.+++. ...|+ ...+..++..+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998854 344 478888999999999999999999887 55554 5678888889999999999
Q ss_pred HHHHHHHHHhcCCC
Q 045600 842 GEIISGMLFEMDPE 855 (899)
Q Consensus 842 a~~~~~~~~~~~p~ 855 (899)
|++.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 99999888887543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=8.1e-09 Score=104.77 Aligned_cols=181 Identities=8% Similarity=-0.020 Sum_probs=114.4
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-C---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----hhH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI--YK-D---AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN----EIT 758 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t 758 (899)
+...+-.+...+.+.|++++|.+.|+++. .| + ...+..+..+|...|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 34455555666666777777777777665 23 2 455666666777777777777777777663 332 224
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 045600 759 YLGVLSACSH--------AGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESL 829 (899)
Q Consensus 759 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 829 (899)
+..+..++.. .|++++|...|+++++.. |+. .....+.......+.. ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 4555555656 667777777777666432 222 2221111111000000 0113566
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCC
Q 045600 830 LGACRIHGNVELGEIISGMLFEMDPEN---PGSYVMLHNIYASA----------GRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 830 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~eA~~~~~~~~~~~~ 888 (899)
+..+...|+++.|+..++++++..|++ +.++..++.+|... |++++|+..++++.+..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 788889999999999999999999884 45888999999877 888999999999886444
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=1.6e-08 Score=104.35 Aligned_cols=174 Identities=9% Similarity=-0.022 Sum_probs=122.0
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCC----
Q 045600 690 VAVSNALMDSYVRCGNISMARKLFGSLIY-----KD----AFSWSVMINGYGLY-GDGEAALELFKQMQLSGVRPN---- 755 (899)
Q Consensus 690 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~---- 755 (899)
..+|+.+...|.+.|++++|+..+++... .+ ..+|+.+...|... |++++|+..+++..+ +.|+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~ 154 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCCh
Confidence 34566677777777777777777776641 12 34678888888886 999999999998877 3331
Q ss_pred ---hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcc------hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-
Q 045600 756 ---EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKME------HYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVS- 824 (899)
Q Consensus 756 ---~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 824 (899)
..++..+...+...|++++|...|++..+........ .|..++.++...|++++|...+++. ...|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2467788889999999999999999998644332221 5677888899999999999999987 5555432
Q ss_pred -----HHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045600 825 -----ILESLLGACR--IHGNVELGEIISGMLFEMDPENPGSYVMLHN 865 (899)
Q Consensus 825 -----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 865 (899)
.+..++..+. ..++++.|+..++++.+++|.+...+..+-.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 2444555554 3466888999998888888876555544433
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.1e-08 Score=91.16 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhh
Q 045600 759 YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIH 836 (899)
Q Consensus 759 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 836 (899)
+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++ . .+.+...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3334444445555555555555554322 122344555566666666666666666555 1 223455667777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
|++++|...++++.+..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8999999999999999999999999999999999999999999999876443
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1.1e-08 Score=105.29 Aligned_cols=176 Identities=10% Similarity=-0.053 Sum_probs=142.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045600 706 ISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVE 784 (899)
Q Consensus 706 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~ 784 (899)
.+...+.+......+...+..+...+...|++++|+..+++..+ ..| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34455556655555566777888889999999999999999988 677 456888888899999999999999998874
Q ss_pred cCCccCcc-hHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chh
Q 045600 785 HGISQKME-HYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMDPEN--PGS 859 (899)
Q Consensus 785 ~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 859 (899)
. .|+.. ........+.+.++.++|.+.+++. ... .+...+..+...+...|++++|+..++++++.+|++ +.+
T Consensus 180 ~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 Q--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp G--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred h--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3 34443 2333344467788888898888877 334 456788999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 860 YVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 860 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+..|+.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999887653
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=1.8e-08 Score=102.15 Aligned_cols=205 Identities=12% Similarity=0.033 Sum_probs=148.7
Q ss_pred CCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC---C-HHHH
Q 045600 653 PDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK--HVAVSNALMDSYVRCGNISMARKLFGSLI--YK---D-AFSW 724 (899)
Q Consensus 653 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~---~-~~~~ 724 (899)
.+...+..+...+.+.|++++|...|+.+.+..... ....+..+...|.+.|++++|...|++.. .| . ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 445666677778899999999999999999875432 15677888899999999999999999987 33 2 4467
Q ss_pred HHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHH
Q 045600 725 SVMINGYGL--------YGDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYA 795 (899)
Q Consensus 725 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 795 (899)
..+..++.. .|++++|++.|++..+ ..|+.. ....+.. +..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 788888888 9999999999999998 456542 2222211 1111100 012255
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCCch--
Q 045600 796 CMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLLGACRIH----------GNVELGEIISGMLFEMDPENPG-- 858 (899)
Q Consensus 796 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 858 (899)
.++..|.+.|++++|...++++ ...|+ ...+..++.++... |++++|+..++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788888888998888888876 33333 34566677777655 8899999999999999999864
Q ss_pred -hHHHHHHHHHhcCChHHHH
Q 045600 859 -SYVMLHNIYASAGRWEDAY 877 (899)
Q Consensus 859 -~~~~l~~~y~~~g~~~eA~ 877 (899)
+...+..++...|+++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 5556667776666665543
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=5.3e-08 Score=94.92 Aligned_cols=173 Identities=9% Similarity=-0.063 Sum_probs=138.8
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC----CHHHHHHHHHHH
Q 045600 708 MARKLFGSLI-YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAG----LVEQSKMVFKSM 782 (899)
Q Consensus 708 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g----~~~~A~~~~~~m 782 (899)
+|.+.|++.. ..++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455555554 4467778888888888888999999998888754 55667777777777 6 899999999988
Q ss_pred HHcCCccCcchHHHHHHHHhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----hCCHHHHHHHHHHHH
Q 045600 783 VEHGISQKMEHYACMVDLLGR----TGHLNEAFIFVKKL-PCKPS---VSILESLLGACRI----HGNVELGEIISGMLF 850 (899)
Q Consensus 783 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 850 (899)
.+.| +...+..|...|.. .+++++|++++++. ...|. +..+..|...+.. .+|.++|...++++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7655 45677788888887 88999999999988 44443 6778888888887 789999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 045600 851 EMDPENPGSYVMLHNIYASA-G-----RWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 851 ~~~p~~~~~~~~l~~~y~~~-g-----~~~eA~~~~~~~~~~~~ 888 (899)
+. |.++.+++.|+.+|... | ++++|++++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 77888999999999864 4 89999999999987764
No 95
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.93 E-value=1.9e-07 Score=100.31 Aligned_cols=222 Identities=12% Similarity=-0.019 Sum_probs=166.8
Q ss_pred HhcccCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHhHhcCCHHHHHHHHHhcC-----CCCH----HHHHHHHHH
Q 045600 664 AGVLINSLNLTHSLMAFVIRKGLDKHV----AVSNALMDSYVRCGNISMARKLFGSLI-----YKDA----FSWSVMING 730 (899)
Q Consensus 664 a~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~ 730 (899)
.+...|+++.|...++.........+. ..++.+...+...|++++|.+.+++.. ..+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455789999999999998876433232 256677788889999999999998875 2232 246677888
Q ss_pred HHhCCCHHHHHHHHHHHHHc----CCC--CC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCc--c--CcchHHHHHH
Q 045600 731 YGLYGDGEAALELFKQMQLS----GVR--PN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGIS--Q--KMEHYACMVD 799 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~~~~~l~~ 799 (899)
+...|++++|+..+++..+. +.. |. ...+..+...+...|++++|...+++..+.... + ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999988763 222 32 245666778899999999999999998843322 1 1246778899
Q ss_pred HHhhcCChHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhhCCHHHHHHHHHHHHhcCCCCc----hhHHHHHHH
Q 045600 800 LLGRTGHLNEAFIFVKKL----PCKPSVSILE-----SLLGACRIHGNVELGEIISGMLFEMDPENP----GSYVMLHNI 866 (899)
Q Consensus 800 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~ 866 (899)
.+...|++++|...+++. ........+. ..+..+...|+.+.|...++++.+..|.++ ..+..++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999998876 1111112222 233447789999999999999998776542 246789999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 045600 867 YASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 867 y~~~g~~~eA~~~~~~~~~ 885 (899)
|...|++++|.+.+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=5.4e-09 Score=121.55 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=68.1
Q ss_pred cccCCHHHHHHHHHHHH--------HhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhC
Q 045600 666 VLINSLNLTHSLMAFVI--------RKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLY 734 (899)
Q Consensus 666 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 734 (899)
...|++++|.+.++... +.. ..+...+..+...|.+.|++++|.+.+++.. ..+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 111 1133344444455555555555555555444 22344445555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHH
Q 045600 735 GDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIF 813 (899)
Q Consensus 735 g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 813 (899)
|++++|++.|++..+ +.| +...+..+..++...|++++ .+.|++.++.. +.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544 334 22344444444445555555 55554444322 11223444444445555555555554
Q ss_pred HHhC
Q 045600 814 VKKL 817 (899)
Q Consensus 814 ~~~~ 817 (899)
++++
T Consensus 557 ~~~a 560 (681)
T 2pzi_A 557 LDEV 560 (681)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 4444
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=3.1e-07 Score=93.69 Aligned_cols=193 Identities=14% Similarity=0.122 Sum_probs=131.4
Q ss_pred hhHHHHHHHHhHhcC--CHHHHHHHHHhcC---CCCHHHHHHHHHHH----HhC---CCHHHHHHHHHHHHHcCCCC-Ch
Q 045600 690 VAVSNALMDSYVRCG--NISMARKLFGSLI---YKDAFSWSVMINGY----GLY---GDGEAALELFKQMQLSGVRP-NE 756 (899)
Q Consensus 690 ~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~ 756 (899)
...++.--..+...| ++++++++++.+. +.+..+|+.-...+ ... +++++++++++++.+ ..| |.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny 144 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNH 144 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCH
Confidence 334444445555555 7777777777765 33455666544444 444 677788888888877 456 55
Q ss_pred hHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC------hHHHHHHHHhC-C-CCCCHHHH
Q 045600 757 ITYLGVLSACSHAGLVE--QSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH------LNEAFIFVKKL-P-CKPSVSIL 826 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~-~~p~~~~~ 826 (899)
.+|..-.-.+.+.|+++ ++++.++++++.. .-+...|..-..++.+.|+ ++++++.++++ . .+-|...|
T Consensus 145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 67777766777777777 7888888887543 2234666666666666665 77888887766 3 33456677
Q ss_pred HHHHHHHHhhCC-HHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 827 ESLLGACRIHGN-VELGEIISGMLFEMD---PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 827 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+...+.+.|+ .+....+.+++.+++ |.++.++..++.+|.+.|+.++|+++++++.+
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777777666 444566777777766 77888888888888888888888888888875
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=9.3e-09 Score=93.36 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=89.8
Q ss_pred CccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 787 ISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 787 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
+.|+. ..+..+...+.+.|++++|...++++ ...| ++..|..++..+...|++++|+..++++++++|+++.+++.+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 34443 67778889999999999999999888 4444 577899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 864 HNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 864 ~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+.+|.+.|++++|++.|+++.+...
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987554
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=1.9e-07 Score=93.97 Aligned_cols=182 Identities=10% Similarity=0.019 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 674 THSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYK-----DAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 674 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
+...+++..+.+ .++......+...+...|++++|++++.+.+.+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666655554 334455567778888999999999999987532 45577788899999999999999999998
Q ss_pred HcCCCC-----ChhHHHHHHHH--HHccC--CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 045600 749 LSGVRP-----NEITYLGVLSA--CSHAG--LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P 818 (899)
Q Consensus 749 ~~g~~p-----~~~t~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 818 (899)
+ ..| +..+...|+.+ ....| ++.+|..+|+++.+. .|+......+.+++.+.|++++|.+.++.+ .
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8 577 35666666665 33334 899999999998743 344333344555899999999999998865 2
Q ss_pred C----------CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 045600 819 C----------KP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 819 ~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
. .| ++.++..++......|+ .|.++++++.+..|++|.+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 24 45566566666666777 7899999999999999988773
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=2.3e-08 Score=114.25 Aligned_cols=159 Identities=9% Similarity=0.031 Sum_probs=102.2
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHH
Q 045600 703 CGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMV 778 (899)
Q Consensus 703 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~ 778 (899)
.|++++|.+.+++.. ..+...|..+...+...|++++|++.+++..+ ..| +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367777888777766 23466777777778888888888888888776 456 345677777777788888888888
Q ss_pred HHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcC
Q 045600 779 FKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIH---GNVELGEIISGMLFEMD 853 (899)
Q Consensus 779 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 853 (899)
+++..+.. +.+...+..++.+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88777543 223467777777777778888877777766 3333 455666777777777 77777777777777777
Q ss_pred CCCchhHHHHH
Q 045600 854 PENPGSYVMLH 864 (899)
Q Consensus 854 p~~~~~~~~l~ 864 (899)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 77777776665
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.86 E-value=5e-08 Score=99.97 Aligned_cols=199 Identities=14% Similarity=0.052 Sum_probs=129.3
Q ss_pred HhHHHHHHHHhcccCCHHHHHHHHHHHHHh------CCCC-ChhHHHHHHHHhHhcCCHHHHHHHHHhcCC-------C-
Q 045600 655 NVTVLSIISAGVLINSLNLTHSLMAFVIRK------GLDK-HVAVSNALMDSYVRCGNISMARKLFGSLIY-------K- 719 (899)
Q Consensus 655 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 719 (899)
..++..+...+...|++++|...++...+. +-.| ....+..+...|...|++++|.+.+++... +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344455555555666666666666655543 1112 345667777888888888888888877641 1
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 045600 720 ---DAFSWSVMINGYGLYGDGEAALELFKQMQLS------GVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEH---- 785 (899)
Q Consensus 720 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 785 (899)
...++..+...|...|++++|++.++++.+. +-.|+ ..++..+...+...|++++|..+++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2457788888999999999999999988874 12443 357888888999999999999999988743
Q ss_pred ---CCccCc-chHHHHHHHHhhcC------ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 045600 786 ---GISQKM-EHYACMVDLLGRTG------HLNEAFIFVKKLP-CKPS-VSILESLLGACRIHGNVELGEIISGMLFEMD 853 (899)
Q Consensus 786 ---~~~p~~-~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 853 (899)
...+.. ..+..+...+...+ .+.++...++... ..|+ ...+..++..+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 122333 44554554444433 3444444555543 2233 3457888899999999999999999998753
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=4e-09 Score=96.37 Aligned_cols=126 Identities=7% Similarity=-0.055 Sum_probs=104.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC
Q 045600 762 VLSACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGN 838 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 838 (899)
|...+...|++++|++.++.... ..|+. ..+..+..+|.+.|++++|.+.+++. ...| ++..|..++..+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 33455677899999999998773 34443 66778999999999999999999988 4445 56789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHhCCCc
Q 045600 839 VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRV-RSCMKRSRLK 889 (899)
Q Consensus 839 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~-~~~~~~~~~~ 889 (899)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+..++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999987765 5888765553
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=1.5e-08 Score=95.58 Aligned_cols=77 Identities=8% Similarity=-0.024 Sum_probs=63.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 809 EAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPEN--PGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 809 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
+|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +.++..++.+|...|+.++|...|++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 456666655 3344 46778888899999999999999999999999875 6699999999999999999999998875
Q ss_pred h
Q 045600 885 R 885 (899)
Q Consensus 885 ~ 885 (899)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=7.5e-08 Score=93.55 Aligned_cols=155 Identities=11% Similarity=0.016 Sum_probs=110.2
Q ss_pred HHhHhcCCHHHHHHHHHhcC--CC-CHHHHHH----------------HHHHHHhCCCHHHHHHHHHHHHHcCCCC-Chh
Q 045600 698 DSYVRCGNISMARKLFGSLI--YK-DAFSWSV----------------MINGYGLYGDGEAALELFKQMQLSGVRP-NEI 757 (899)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 757 (899)
..+...|++++|.+.|++.. .| +...|.. +..+|...|++++|+..+++..+ +.| +..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
Confidence 34556666666666666665 22 2334444 88888999999999999999988 567 456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH--LNEAFIFVKKLPCKPSVS--ILESLLGAC 833 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~ 833 (899)
.+..+..++...|++++|...|+++++.. +.+...+..++.+|...|+ .+.+...+++.. .|++. .+.....++
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHH
Confidence 88888889999999999999999998643 2234788888888876654 344556666652 34433 344556667
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCC
Q 045600 834 RIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
...|++++|+..++++++++|++
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCH
Confidence 77889999999999999999973
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=7.2e-08 Score=93.66 Aligned_cols=163 Identities=10% Similarity=0.005 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHH----------------HHHHHHccCCHHHHHHHHHHHHHc
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLG----------------VLSACSHAGLVEQSKMVFKSMVEH 785 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------l~~~~~~~g~~~~A~~~~~~m~~~ 785 (899)
.+......+...|++++|+..|++..+ ..|+. ..|.. +..++...|++++|...|++.++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344556677899999999999999998 67854 46666 888999999999999999999965
Q ss_pred CCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC--HHHHHHHHHHHHhcCCCCchhHH
Q 045600 786 GISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGN--VELGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 786 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~ 861 (899)
. +.+...+..++.+|...|++++|.+.+++. ...| +...+..++..+...|+ .+.+...++++....|. ...++
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 4 224588999999999999999999999988 4455 46678888888766554 45566667666543322 34677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 862 MLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 862 ~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
.++.++...|++++|++.|+++.+..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999875543
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=2.3e-08 Score=88.00 Aligned_cols=97 Identities=8% Similarity=0.009 Sum_probs=61.5
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+...+..|.+.|++++|++.+++. ...| ++..|..++..+...|++++|+..++++++++|+++.+|..+|.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555566666666666666666655 2223 345566666666666666666767777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 045600 870 AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~~ 888 (899)
.|++++|++.|++..+..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHCc
Confidence 7777777777766665433
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=1.5e-07 Score=83.66 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLL 801 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 801 (899)
.|..+...+...|++++|+++++++.+. .| +...+..+...+...|++++|..+++++.+.. +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 4556666677777777777777777663 33 44566666667777777777777777776543 22345666777777
Q ss_pred hhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 802 GRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 802 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
...|++++|.+.++++ . .+.+...+..++..+...|+.+.|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7778888887777766 2 2334566777777788888888888888888887775
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=9e-07 Score=91.26 Aligned_cols=160 Identities=7% Similarity=-0.093 Sum_probs=119.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChh----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc-----chHH
Q 045600 726 VMINGYGLYGDGEAALELFKQMQLSG-VRPNEI----TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM-----EHYA 795 (899)
Q Consensus 726 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~ 795 (899)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|...++++.+.....+. ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887732 122211 2334555667778999999999998863322221 2688
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhH
Q 045600 796 CMVDLLGRTGHLNEAFIFVKKLP-----CKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPEN------PGSY 860 (899)
Q Consensus 796 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 860 (899)
.++.+|...|++++|...++++- ...+ ..++..++..+...|++++|+..++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887761 1112 2257888899999999999999999999876443 6789
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 045600 861 VMLHNIYASAGR-WEDAYRVRSCMKR 885 (899)
Q Consensus 861 ~~l~~~y~~~g~-~~eA~~~~~~~~~ 885 (899)
..+|.+|.+.|+ +++|++.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998764
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=3.4e-08 Score=102.80 Aligned_cols=219 Identities=11% Similarity=-0.024 Sum_probs=158.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc-cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHH
Q 045600 632 QTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVL-INSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMAR 710 (899)
Q Consensus 632 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 710 (899)
..|++++|.+++++..+..- . .+.. .++++.|...+... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-T----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-C----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-c----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 35678889988888776421 1 1222 57788887777553 45788899999999
Q ss_pred HHHHhcCC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHHccCCHHHHH
Q 045600 711 KLFGSLIY-----KD----AFSWSVMINGYGLYGDGEAALELFKQMQLSGV---RPN--EITYLGVLSACSHAGLVEQSK 776 (899)
Q Consensus 711 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~l~~~~~~~g~~~~A~ 776 (899)
+.+.+... .+ ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99987751 12 34788899999999999999999998876311 121 2467777888888 9999999
Q ss_pred HHHHHHHHcC----CccC-cchHHHHHHHHhhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhhCCHHHHH
Q 045600 777 MVFKSMVEHG----ISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-P---CKPS----VSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 777 ~~~~~m~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~ 843 (899)
..|++.++.. ..+. ..++..+..+|.+.|++++|++.+++. . ..++ ...+..++..+...|+++.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999987321 1111 367888999999999999999999877 1 1122 124556667777889999999
Q ss_pred HHHHHHHhcCCCCchh-----HHHHHHHHHhcCChHHHHHH
Q 045600 844 IISGMLFEMDPENPGS-----YVMLHNIYASAGRWEDAYRV 879 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~eA~~~ 879 (899)
..+++++ .+|..... +..++.+| ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99988775 34455555 56777666553
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.6e-07 Score=91.65 Aligned_cols=130 Identities=12% Similarity=-0.011 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHH
Q 045600 722 FSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLL 801 (899)
Q Consensus 722 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 801 (899)
..+..+...+...|++++|++.+++. +.|+...+..+...+...|++++|...+++..+.. +.+...+..++.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 34556667777788888888877765 35566777777777778888888888887777543 22346667777777
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-----------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 045600 802 GRTGHLNEAFIFVKKL-PCKPS-----------------VSILESLLGACRIHGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 802 ~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 856 (899)
...|++++|.+.+++. ...|+ ...+..++..+...|+++.|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 7777777777777665 21111 2456666677777777777777777777777765
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=1.6e-07 Score=97.69 Aligned_cols=193 Identities=10% Similarity=-0.081 Sum_probs=128.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhC--CC---CChhHHHHHHHHhHhcCCHH
Q 045600 633 TNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKG--LD---KHVAVSNALMDSYVRCGNIS 707 (899)
Q Consensus 633 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~~~~~g~~~ 707 (899)
.+++++|...|.+. ...+...|++++|...+....+.. .. .....|+.+...|.+.|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 46677777777664 345567788888888888776541 11 12446777788888888888
Q ss_pred HHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHccCC
Q 045600 708 MARKLFGSLIY-----KD----AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-------EITYLGVLSACSHAGL 771 (899)
Q Consensus 708 ~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~l~~~~~~~g~ 771 (899)
+|.+.+++... .+ ..+++.+...|.. |++++|++.+++..+. .|+ ..++..+...|...|+
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV--FENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 88888877641 11 3467777888877 8899998888887762 221 3467777788888899
Q ss_pred HHHHHHHHHHHHHc----CCccCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCC---H---HHHHHHHHHHHhhCCHH
Q 045600 772 VEQSKMVFKSMVEH----GISQKM-EHYACMVDLLGRTGHLNEAFIFVKKLPCKPS---V---SILESLLGACRIHGNVE 840 (899)
Q Consensus 772 ~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---~---~~~~~l~~~~~~~g~~~ 840 (899)
+++|...|++..+. +..+.. ..+..++.++...|++++|...+++....|+ . ..+..++..+ ..|+.+
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~ 249 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEE 249 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHH
Confidence 99999888888732 211111 3566677777788889988888877533332 1 1234444444 566765
Q ss_pred HHHH
Q 045600 841 LGEI 844 (899)
Q Consensus 841 ~a~~ 844 (899)
....
T Consensus 250 ~~~~ 253 (307)
T 2ifu_A 250 QLLR 253 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=1.5e-08 Score=92.27 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=72.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+..++..+.+.|++++|...+++. ... .+...|..++..+...|++++|+..++++++++|+++.++..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 55666777777777777777777766 233 3556677777777788888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 045600 870 AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~~ 888 (899)
.|++++|++.|++..+..+
T Consensus 102 ~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 8888888888887765444
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=4e-07 Score=105.76 Aligned_cols=180 Identities=10% Similarity=-0.017 Sum_probs=133.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh
Q 045600 631 VQTNKAKQAVAFFTELL--------GAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVR 702 (899)
Q Consensus 631 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 702 (899)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++...+.... +...+..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888887 321 334456667777788888888888888888877544 56677788888888
Q ss_pred cCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHH
Q 045600 703 CGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMV 778 (899)
Q Consensus 703 ~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~ 778 (899)
.|++++|.+.|++.. .| +...|..+..++...|++++ ++.|++..+ +.| +...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888876 33 56778888888888888888 888888887 566 456788888888888888888888
Q ss_pred HHHHHHcCCccCc-chHHHHHHHHhhcCC--------hHHHHHHHHhC
Q 045600 779 FKSMVEHGISQKM-EHYACMVDLLGRTGH--------LNEAFIFVKKL 817 (899)
Q Consensus 779 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 817 (899)
|+++. ...|+. ..+..++.++...|+ +++|.+.+..+
T Consensus 557 ~~~al--~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVP--PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSC--TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhc--ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 88876 344553 667777777766444 66666666666
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=2e-07 Score=106.45 Aligned_cols=152 Identities=16% Similarity=0.063 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHH
Q 045600 734 YGDGEAALELFKQMQLSGVRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAF 811 (899)
Q Consensus 734 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 811 (899)
.|++++|++.+++..+ ..|+ ...+..+...+...|++++|.+.+++..+. .|+ ...+..++.+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3677778888877766 4563 456777777777888888888888887743 343 467777778888888888888
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc---CChHHHHHHHHHHHhC
Q 045600 812 IFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASA---GRWEDAYRVRSCMKRS 886 (899)
Q Consensus 812 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~eA~~~~~~~~~~ 886 (899)
+.+++. ...| +...+..+...+...|++++|...++++++.+|+++.++..++.+|... |++++|.+.++++.+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 877776 3333 4556777777778888888888888888888888888888888888888 8888888888877765
Q ss_pred CCc
Q 045600 887 RLK 889 (899)
Q Consensus 887 ~~~ 889 (899)
++.
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 554
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=1.4e-07 Score=82.96 Aligned_cols=115 Identities=9% Similarity=-0.017 Sum_probs=91.2
Q ss_pred CCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 045600 752 VRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILES 828 (899)
Q Consensus 752 ~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 828 (899)
+.|+. ..+......|.+.|++++|.+.|++.++.. +.+...|..++.+|.+.|++++|++.+++. ...| +...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 45533 356667777888888888888888877543 234577888888888899999998888877 3344 4667888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIY 867 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 867 (899)
++..+...|++++|+..++++++++|+++.++..|+.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999887753
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=8e-08 Score=98.27 Aligned_cols=191 Identities=9% Similarity=-0.079 Sum_probs=138.5
Q ss_pred ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 045600 689 HVAVSNALMDSYVRCGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLS 764 (899)
Q Consensus 689 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~ 764 (899)
+...+..+...+.+.|++++|.+.|++.. .| +...|..+..+|...|++++|++.+++..+ +.| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34566777888889999999999999876 34 778899999999999999999999999887 567 4568888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKM-EHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
++...|++++|...|++..+.. |+. ..+...+....+..+...... .......++......+... ..|+.+.|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 9999999999999999887432 211 111112222222221111111 2223344444444444332 368999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 045600 844 IISGMLFEMDPENPGSYVMLHNIYASA-GRWEDAYRVRSCMKRS 886 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~eA~~~~~~~~~~ 886 (899)
+.++++++++|++......+...+.+. +++++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999988888888888876 7899999999988753
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=5.9e-07 Score=92.65 Aligned_cols=162 Identities=7% Similarity=-0.091 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-h----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCc---cC--cc
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRPN-E----ITYLGVLSACSHAGLVEQSKMVFKSMVEHGIS---QK--ME 792 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p~--~~ 792 (899)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777888899999888888777422111 1 12334455667888999999999888742211 11 24
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------Cc
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL----PCKPS-----VSILESLLGACRIHGNVELGEIISGMLFEMDPE------NP 857 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 857 (899)
.|..++..|...|++++|...++++ ...|+ ..++..++..+...|++++|+..++++++..++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788899999999999999888775 11222 146788889999999999999999999887532 26
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 045600 858 GSYVMLHNIYASAGRWEDA-YRVRSCMK 884 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA-~~~~~~~~ 884 (899)
.++..+|.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6889999999999999999 77787764
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=2.3e-07 Score=95.30 Aligned_cols=135 Identities=11% Similarity=-0.035 Sum_probs=113.6
Q ss_pred CC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-
Q 045600 754 PN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLL- 830 (899)
Q Consensus 754 p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~- 830 (899)
|+ ...+..+...+...|++++|...|+++.+.. +-+...+..++.+|.+.|++++|.+.++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 54 4567778888999999999999999999543 223478888999999999999999999998 5667766544333
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 831 GACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 831 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
..+...++.+.|+..++++++.+|+++.++..|+.+|...|++++|+..++++.+..+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 33667788888999999999999999999999999999999999999999999876554
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=8.5e-06 Score=83.03 Aligned_cols=227 Identities=8% Similarity=-0.027 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhH-HHHHHHHhcccC--CHHHHHHHHHHHHHhCCCCChhHHHHHHHHh----Hhc---
Q 045600 634 NKAKQAVAFFTELLGAGLEPDNVT-VLSIISAGVLIN--SLNLTHSLMAFVIRKGLDKHVAVSNALMDSY----VRC--- 703 (899)
Q Consensus 634 g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~--- 703 (899)
...++|+.+++++... .|+..| ++.--..+...+ ++++++..++.+....++ +..+|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3456888888888885 355443 444444555566 888899999888887655 444454443333 444
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCC------
Q 045600 704 GNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGE--AALELFKQMQLSGVRP-NEITYLGVLSACSHAGL------ 771 (899)
Q Consensus 704 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~------ 771 (899)
+++++++++++++. .++..+|+.-...+.+.|+++ ++++.++++.+ ..| |...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 78999999999997 557889998888888889888 99999999998 566 66788887777777776
Q ss_pred HHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhhCCHHHHHHH
Q 045600 772 VEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNE-AFIFVKKL-PC----KPSVSILESLLGACRIHGNVELGEII 845 (899)
Q Consensus 772 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~ 845 (899)
++++++.+++++... +-|...|+.+...+.+.|+..+ +.++.++. .. ..++..+..++..+.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 899999999999654 3355888888999988888555 55677766 21 34667888999999999999999999
Q ss_pred HHHHHh-cCCCCchhHHHHHHH
Q 045600 846 SGMLFE-MDPENPGSYVMLHNI 866 (899)
Q Consensus 846 ~~~~~~-~~p~~~~~~~~l~~~ 866 (899)
++.+.+ .+|.+...|...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999997 799999988876653
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=8.7e-07 Score=87.21 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=133.5
Q ss_pred HhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhHhcCCHHHHHHHHHhcC--CCC-H---HHHHH
Q 045600 655 NVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDK--HVAVSNALMDSYVRCGNISMARKLFGSLI--YKD-A---FSWSV 726 (899)
Q Consensus 655 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~ 726 (899)
...+..+...+...|++++|...|+.+.+..+.. ....+..+..+|.+.|++++|++.|++.. .|+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566677889999999999999999885432 24577888899999999999999999986 342 2 24555
Q ss_pred HHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045600 727 MINGYGL------------------YGDGEAALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQSKMVFKSMVEHGI 787 (899)
Q Consensus 727 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 787 (899)
+..++.. .|++++|++.|+++.+ ..|+.. .+...... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----------HHHHHHHH----
Confidence 5555554 5789999999999998 567653 33222110 01111111
Q ss_pred ccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 788 SQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV----SILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 788 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
.....++..|.+.|++++|...++++ ...|+. ..+..++.++.+.|+.+.|+..++.+....|++..
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235778899999999999999887 334442 45778889999999999999999999998888654
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=1.3e-07 Score=93.86 Aligned_cols=184 Identities=9% Similarity=-0.088 Sum_probs=139.7
Q ss_pred hcCCHHHHHHHHHhcC--CC-CHHHHHHH-------HHHHHhCCCHHHHHHHHHHHHHcCCCCCh---------------
Q 045600 702 RCGNISMARKLFGSLI--YK-DAFSWSVM-------INGYGLYGDGEAALELFKQMQLSGVRPNE--------------- 756 (899)
Q Consensus 702 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 756 (899)
..++.++|.+.|.+.. .| ....|..+ ...+...++..+++..+.+-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5788999999999887 34 56678877 4566666666666665555544 44432
Q ss_pred -------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH----HH
Q 045600 757 -------ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSV----SI 825 (899)
Q Consensus 757 -------~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~ 825 (899)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.|+|++|+..+++....|++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 123345667889999999999999887433 43335666777899999999999999987544443 35
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMD--PE-NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
+..+..++...|+.++|+..++++.... |. .+.+.+.++.++.++|+.+||...|+++.+..+.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7788889999999999999999998654 44 4568899999999999999999999999886654
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=6.4e-07 Score=83.08 Aligned_cols=126 Identities=10% Similarity=-0.028 Sum_probs=90.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhh
Q 045600 759 YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC-KPSVSILESLLGACRIH 836 (899)
Q Consensus 759 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~ 836 (899)
+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|.+.+++. .. +.+...+..++..+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 4444445556666666666666655432 223456666777777777777777777665 22 33456778888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNI--YASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~eA~~~~~~~~~ 885 (899)
|++++|...++++++.+|+++..+..++.+ +...|++++|++.+++..+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999888555544 8889999999999987653
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=5.4e-07 Score=84.75 Aligned_cols=155 Identities=8% Similarity=-0.041 Sum_probs=110.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHc
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSA-CSH 768 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~-~~~ 768 (899)
+..+...+.+.|++++|...+++.. +.+...+..+...+...|++++|+..+++..+ ..|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHh
Confidence 3455667778888888888888877 34667888888888888888888888888766 34533322222211 222
Q ss_pred cCCHHHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhhCCHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS---VSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~ 843 (899)
.+...+|...+++..+. .|+ ...+..+..++...|++++|...++++ ...|+ ...+..++..+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333467778887753 343 477888888889999999999888877 55554 457788888888889988888
Q ss_pred HHHHHHHh
Q 045600 844 IISGMLFE 851 (899)
Q Consensus 844 ~~~~~~~~ 851 (899)
..+++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=1.7e-07 Score=88.40 Aligned_cols=121 Identities=11% Similarity=0.100 Sum_probs=55.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHH
Q 045600 733 LYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAF 811 (899)
Q Consensus 733 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 811 (899)
..|++++|++.+++..+ ..| +...+..+...|...|++++|...|+++.+.. +.+...+..++.++
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l---------- 88 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVL---------- 88 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHH----------
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----------
Confidence 34555555555555554 233 33444445555555555555555555554321 11223333444440
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhCCH--HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 812 IFVKKLPCKPSVSILESLLGACRIHGNV--ELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 812 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
+...|++ +.|+..++++++.+|+++.++..++.+|...|++++|+..++++.+..
T Consensus 89 ---------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 89 ---------------------YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp ---------------------HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ---------------------HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 3344444 555555555555555555555555555555555555555555554433
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=3.7e-07 Score=82.33 Aligned_cols=96 Identities=13% Similarity=-0.058 Sum_probs=67.8
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+..++..+.+.|++++|...+++. ... .+...|..+...+...|+++.|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44555666667777777777777665 223 3455667777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhCC
Q 045600 870 AGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~ 887 (899)
.|++++|++.++++.+..
T Consensus 99 ~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777776543
No 126
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=3.1e-07 Score=80.02 Aligned_cols=97 Identities=14% Similarity=-0.035 Sum_probs=84.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+..++..+.+.|++++|...+++. ...| +...|..++..+...|+.++|+..++++++++|+++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45666788899999999999999887 4444 567788899999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 045600 870 AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~~ 888 (899)
.|++++|++.++++.+..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999986544
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=6e-07 Score=94.36 Aligned_cols=143 Identities=13% Similarity=-0.018 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHH
Q 045600 721 AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDL 800 (899)
Q Consensus 721 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 800 (899)
...|..+...|.+.|++++|+..|++..+ +.|+...+ ..+.+.++- +.....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 44566666666666677777666666665 23322100 000000000 0013567778888
Q ss_pred HhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH-H
Q 045600 801 LGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDA-Y 877 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA-~ 877 (899)
|.+.|++++|+..+++. ...| +...+..++.++...|++++|+..++++++++|+++.++..++.+|...|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877 3333 5667888899999999999999999999999999999999999999999999999 4
Q ss_pred HHHHHHH
Q 045600 878 RVRSCMK 884 (899)
Q Consensus 878 ~~~~~~~ 884 (899)
..+++|.
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566654
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.52 E-value=2.3e-06 Score=83.33 Aligned_cols=130 Identities=8% Similarity=-0.135 Sum_probs=107.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccC
Q 045600 692 VSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAG 770 (899)
Q Consensus 692 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g 770 (899)
.+..+...+...|++++|.+.+++...++...|..+...|...|++++|++.+++..+ ..| +...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcc
Confidence 3456677888899999999999999888888999999999999999999999999988 456 5568888888999999
Q ss_pred CHHHHHHHHHHHHHcCCc--------------cC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 045600 771 LVEQSKMVFKSMVEHGIS--------------QK-MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSV 823 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 823 (899)
++++|.+.+++..+.... |. ...+..++.+|...|++++|.+.+++. ...|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999864311 11 167788999999999999999999887 566654
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.52 E-value=2.5e-06 Score=82.85 Aligned_cols=174 Identities=10% Similarity=-0.065 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHH
Q 045600 674 THSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLI-YKDAFSWSVMINGYGLYG----DGEAALELFKQMQ 748 (899)
Q Consensus 674 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 748 (899)
|...|+...+.| ++..+..+...|...+++++|.+.|++.. ..++..+..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 55566667777777888888888888776 3466677777777776 5 7888888888887
Q ss_pred HcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCc-cCcchHHHHHHHHhh----cCChHHHHHHHHhC-C
Q 045600 749 LSGVRPNEITYLGVLSACSH----AGLVEQSKMVFKSMVEHGIS-QKMEHYACMVDLLGR----TGHLNEAFIFVKKL-P 818 (899)
Q Consensus 749 ~~g~~p~~~t~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~ 818 (899)
+.| +...+..|...|.. .+++++|.++|++..+.+.. .....+..|..+|.. .+++++|+.++++. .
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 643 55667777777766 77888888888888755532 114667778888877 77888888888887 3
Q ss_pred CCCCHHHHHHHHHHHHhh-C-----CHHHHHHHHHHHHhcCC
Q 045600 819 CKPSVSILESLLGACRIH-G-----NVELGEIISGMLFEMDP 854 (899)
Q Consensus 819 ~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 854 (899)
..+++..+..|...|..- | |.++|...++++.+...
T Consensus 158 ~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 334555666677666542 3 88899999988887754
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.51 E-value=8e-05 Score=82.24 Aligned_cols=203 Identities=15% Similarity=0.050 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhHHHHh
Q 045600 533 EEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALITMYCNCGSTNDGRLCLLLF 612 (899)
Q Consensus 533 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 612 (899)
+.+..+|+++... .+-+...|...+.-+...|+++.|..+++..... +.+...+. .|+.....++. +..+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~--~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV--YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH--HHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH--HHHHH
Confidence 4566788887774 3445677777777778888999999999998888 33332222 22222111111 01111
Q ss_pred hcC---C---------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHh-cccCCHHHHHHHHH
Q 045600 613 QMG---D---------KREISLWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAG-VLINSLNLTHSLMA 679 (899)
Q Consensus 613 ~~~---~---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~~~~ 679 (899)
+.. . ......|-..+....+.+..+.|..+|++. ... ..+...|......- ...++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 012244666666666666777777777777 211 12223332111111 11224666777776
Q ss_pred HHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 045600 680 FVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQ 748 (899)
Q Consensus 680 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 748 (899)
...+.-.. ++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.
T Consensus 345 ~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 345 SGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66665321 23344445555566666666666666663 234555555555555566666665555554
No 131
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=6.2e-07 Score=76.59 Aligned_cols=100 Identities=12% Similarity=-0.042 Sum_probs=83.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPE--NPGSYVMLHNI 866 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 866 (899)
...+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|+..++++++..|+ ++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 356667777788888888888887776 2 2345667888888899999999999999999999999 99999999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCCcc
Q 045600 867 YASA-GRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 867 y~~~-g~~~eA~~~~~~~~~~~~~~ 890 (899)
|... |++++|++.++++.+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999998765543
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=8.7e-05 Score=81.97 Aligned_cols=203 Identities=11% Similarity=-0.033 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHH-HHHHHh
Q 045600 637 KQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMA-RKLFGS 715 (899)
Q Consensus 637 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 715 (899)
+.+..+|+++.... +-+...+...+.-+...|+.+.|..++++.... +.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 44566777776643 334555555566666778888888888888877 223322222 2221111111 112211
Q ss_pred cC------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH-HccCCHHHHHHHHHHH
Q 045600 716 LI------------YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSAC-SHAGLVEQSKMVFKSM 782 (899)
Q Consensus 716 ~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~-~~~g~~~~A~~~~~~m 782 (899)
.. ......|...+..+.+.++.+.|.++|++. ... .++...|......- ...++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 112346777888887888899999999988 311 12333343222211 1234699999999998
Q ss_pred HHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 045600 783 VEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFE 851 (899)
Q Consensus 783 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 851 (899)
.+.- +-++..+...++.....|+.+.|..+++++. .....|...+..-...|+.+.+..++++..+
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8543 2233456667787788899999999999983 3567888888888889999998888887774
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=5.6e-07 Score=79.09 Aligned_cols=96 Identities=8% Similarity=-0.055 Sum_probs=72.8
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+..++..+.+.|++++|...+++. ... .+...+..++..+...|++++|+..++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556667777777777777777765 223 3456677777888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhCC
Q 045600 870 AGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~ 887 (899)
.|++++|++.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 888888888888877644
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=1e-06 Score=78.02 Aligned_cols=114 Identities=6% Similarity=-0.029 Sum_probs=74.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC-KPSVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 835 (899)
.+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|.+.+++. .. +.+...+..++..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 44445555555555555555555555321 113355566666666666666666666655 22 2345567777777888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 045600 836 HGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGR 872 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 872 (899)
.|++++|+..++++++.+|.++..+..++.+|..+|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888887764
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=1.7e-06 Score=75.41 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=76.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 835 (899)
.+..+...+...|++++|.++++++.+.. +.+...+..++..+.+.|++++|...++++ . .+.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 44455555555666666666666555332 123355566666666667777776666665 2 23345567777788888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 836 HGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
.|+++.|...++++.+..|+++..+..++.++...|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888889988888888888887654
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1.1e-06 Score=77.39 Aligned_cols=115 Identities=9% Similarity=-0.061 Sum_probs=82.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 835 (899)
.+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|.+.+++. ... .+...+..++..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 44455555556666666666666655332 223456666777777777777777777665 222 345667788888889
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 045600 836 HGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRW 873 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 873 (899)
.|+++.|...++++++..|+++.++..++.++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988875
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=2.1e-05 Score=80.90 Aligned_cols=158 Identities=7% Similarity=-0.150 Sum_probs=118.9
Q ss_pred HHHHhHhcCCHHHHHHHHHhcCC--C-CH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCh----hHHHH
Q 045600 696 LMDSYVRCGNISMARKLFGSLIY--K-DA------FSWSVMINGYGLYGDGEAALELFKQMQLSGVR-PNE----ITYLG 761 (899)
Q Consensus 696 li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 761 (899)
.+..+...|++++|.+.+++... + +. ..+..+...+...|++++|++.+++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988752 1 11 13334666777788999999999999884322 232 26888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH----c-CCccCc-chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 045600 762 VLSACSHAGLVEQSKMVFKSMVE----H-GISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL-------PCKPS-VSILE 827 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 827 (899)
+..+|...|++++|..+++++.+ . +..+.. .+|..++..|.+.|++++|.+.+++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999999883 1 222222 57888999999999999999998766 22222 55788
Q ss_pred HHHHHHHhhCC-HHHHHHHHHHHHhcC
Q 045600 828 SLLGACRIHGN-VELGEIISGMLFEMD 853 (899)
Q Consensus 828 ~l~~~~~~~g~-~~~a~~~~~~~~~~~ 853 (899)
.++..+...|+ .++|...+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88899999994 699999999988753
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=7.3e-07 Score=82.68 Aligned_cols=112 Identities=6% Similarity=-0.147 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045600 755 NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGA 832 (899)
Q Consensus 755 ~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 832 (899)
+...+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567777888889999999999999888543 224577888888899999999999888877 3344 46678888888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045600 833 CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIY 867 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 867 (899)
+...|++++|+..++++++++|+++..+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 88899999999999999999998888766655443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=4.5e-07 Score=82.27 Aligned_cols=111 Identities=9% Similarity=-0.030 Sum_probs=80.2
Q ss_pred CCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 045600 752 VRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILES 828 (899)
Q Consensus 752 ~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 828 (899)
+.|+ ...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|.+.+++. ...| ++..+..
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4453 3455666667777777777777777777433 224467777888888888888888888776 3333 4566778
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
++..+...|++++|+..+++++++.|+++......
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 88888889999999999999999999888765443
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=2.5e-06 Score=82.23 Aligned_cols=94 Identities=6% Similarity=-0.049 Sum_probs=53.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC----CCCC-C----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CC----
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL----PCKP-S----VSILESLLGACRIHGNVELGEIISGMLFEMDP--EN---- 856 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~---- 856 (899)
..+..+...+...|++++|.+.+++. ...+ + ...+..+...+...|++++|...++++++..+ ++
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34445555555555555555555443 0011 1 12345555666666666666666666665432 11
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 857 PGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 857 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..++..++.+|...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22356788888888888888887777654
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=9.9e-07 Score=78.79 Aligned_cols=98 Identities=8% Similarity=-0.113 Sum_probs=66.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
...+..++..+...|++++|...+++. ... .+...+..++..+...|+++.|+..++++++.+|+++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 355556666666666666666666655 222 235566667777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 045600 869 SAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 869 ~~g~~~eA~~~~~~~~~~~~ 888 (899)
..|++++|+..++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHCh
Confidence 77777777777777765443
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=6.5e-07 Score=78.75 Aligned_cols=95 Identities=7% Similarity=-0.028 Sum_probs=69.7
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-------hHHH
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG-------SYVM 862 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 862 (899)
..+..++..+.+.|++++|++.+++. ...| +...|..++..+...|++++|+..++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777777777777777777766 3333 3556777777888888888888888888888776543 6777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 045600 863 LHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 863 l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
+|.+|...|++++|++.|++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888888888888887653
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=1.7e-05 Score=81.66 Aligned_cols=208 Identities=16% Similarity=0.102 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHhcC-CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHH
Q 045600 674 THSLMAFVIRKGLDKHVAVSNALMDSYVRCG-NISMARKLFGSLI---YKDAFSWSVMINGYGLY-G-DGEAALELFKQM 747 (899)
Q Consensus 674 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m 747 (899)
|+.+.+.++..... +..+++.--..+...| .+++++++++.+. ..+..+|+.-...+... + ++++++++++++
T Consensus 73 AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 73 ALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33334443333322 3333444444444555 4677777777665 33555666655555554 5 667777777777
Q ss_pred HHcCCCC-ChhHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC-------hHHHH
Q 045600 748 QLSGVRP-NEITYLGVLSACSHAGLVE--------QSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH-------LNEAF 811 (899)
Q Consensus 748 ~~~g~~p-~~~t~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~ 811 (899)
.+ ..| |..+|+.-...+.+.|.++ ++++.++++++.. .-|...|+....++.+.++ +++++
T Consensus 152 L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 152 LL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp TS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 65 455 4455655555554444444 7777777777543 2244666666666666665 56777
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhhCCH--------------------HHHHHHHHHHHhcC------CCCchhHHHH
Q 045600 812 IFVKKL-PCKP-SVSILESLLGACRIHGNV--------------------ELGEIISGMLFEMD------PENPGSYVML 863 (899)
Q Consensus 812 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l 863 (899)
+.++++ ...| |...|..+...+.+.|.. .....+...+.... +.++.++..|
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 308 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYL 308 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHH
Confidence 777665 3333 455666666656555543 22233333333322 4677788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 045600 864 HNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 864 ~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
+.+|...|+.++|.++++.+.+
T Consensus 309 ~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 309 ADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=2e-06 Score=74.13 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=56.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASA 870 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 870 (899)
.+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444555555555555555555554 2 2223445555556666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhCC
Q 045600 871 GRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 871 g~~~eA~~~~~~~~~~~ 887 (899)
|++++|.+.+++..+.+
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 66666666666665443
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=2.5e-05 Score=79.97 Aligned_cols=180 Identities=12% Similarity=-0.002 Sum_probs=119.3
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCC-HHHHHHH
Q 045600 706 ISMARKLFGSLI---YKDAFSWSVMINGYGLYG--DGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGL-VEQSKMV 778 (899)
Q Consensus 706 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~-~~~A~~~ 778 (899)
+++++++++.+. +.+..+|+.-...+...| ++++++++++++.+ ..| |...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 566777777665 446677777766666666 37788888888877 456 55677776666677776 5788888
Q ss_pred HHHHHHcCCccCcchHHHHHHHHhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh------
Q 045600 779 FKSMVEHGISQKMEHYACMVDLLGRT--------------GHLNEAFIFVKKL-PCKP-SVSILESLLGACRIH------ 836 (899)
Q Consensus 779 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 836 (899)
++++++.. +-|...|+....++.+. +.++++++.+++. ...| |...|.-+-+.+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 88877543 22345666655555444 4567777777766 3333 455566555555443
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH---hcCChHHHHHHHHHHHhCCC
Q 045600 837 -----GNVELGEIISGMLFEMDPENPGSYVMLHNIYA---SAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 837 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~eA~~~~~~~~~~~~ 888 (899)
+.++++++.++++++++|++...+..++.+.. ..|..+++.++++++++.++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34678888888888888888666655554332 35777888888888876554
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=2e-06 Score=76.15 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=88.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
...+..++..+.+.|++++|.+.+++. ...| +...+..++..+...|++++|+..++++++.+|+++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 477888999999999999999999987 4444 66788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 045600 869 SAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 869 ~~g~~~eA~~~~~~~~~~~~ 888 (899)
..|++++|++.+++..+..+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCG
T ss_pred HHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999887554
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=3.3e-06 Score=76.41 Aligned_cols=96 Identities=10% Similarity=-0.011 Sum_probs=56.7
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNI 866 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 866 (899)
..+..++..+...|++++|.+.+++. ...|+ ...+..+...+...|++++|+..++++++.+|+++.++..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 44445555555555555555555554 34444 34455555566666666666666666666666666666666666
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 045600 867 YASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 867 y~~~g~~~eA~~~~~~~~~~~ 887 (899)
|...|++++|.+.+++..+..
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 666666666666666665433
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.35 E-value=2.1e-06 Score=77.69 Aligned_cols=98 Identities=4% Similarity=-0.051 Sum_probs=52.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 835 (899)
.+..+...+.+.|++++|...|+++++.. +.+...|..+..+|...|++++|++.+++. ...| ++..|..++.++..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 34444444555555555555555554322 112345555556666666666666655555 2222 23455566666666
Q ss_pred hCCHHHHHHHHHHHHhcCCCC
Q 045600 836 HGNVELGEIISGMLFEMDPEN 856 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~ 856 (899)
.|++++|+..+++++++.|++
T Consensus 117 lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 666666666666666666654
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=3.5e-06 Score=73.37 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=88.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|+..++++.+..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 367788999999999999999999987 2 33456788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 045600 869 SAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 869 ~~g~~~eA~~~~~~~~~~~~ 888 (899)
..|++++|.++++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987554
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=3.3e-06 Score=81.05 Aligned_cols=169 Identities=11% Similarity=-0.046 Sum_probs=101.9
Q ss_pred HhHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHH
Q 045600 699 SYVRCGNISMARKLFGSLIY---KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQS 775 (899)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A 775 (899)
.....|++++|.+.++.-.. .....+..+...+...|++++|++.|++..+ +.|+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHHHH
Confidence 34445566666665554331 1344566677777777888888888777776 33322110000 00000
Q ss_pred HHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 045600 776 KMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMD 853 (899)
Q Consensus 776 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 853 (899)
. .. .....|..+..+|.+.|++++|...+++. ... .+...+..++..+...|+++.|+..++++++++
T Consensus 83 ~---~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 83 K---KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp H---HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred H---HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0 00 01256667788888888888888888776 333 356678888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 045600 854 PENPGSYVMLHNIYASAGRWEDAY-RVRSCMKRSR 887 (899)
Q Consensus 854 p~~~~~~~~l~~~y~~~g~~~eA~-~~~~~~~~~~ 887 (899)
|+++.++..++.++...|+.+++. ..+..+...+
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988888 5566665443
No 151
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=1.7e-06 Score=77.32 Aligned_cols=63 Identities=8% Similarity=-0.091 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 825 ILESLLGACRIHGNVELGEIISGMLFEM-------DPENPGSY----VMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.|..+..++.+.|++++|+..+++++++ +|+++.+| +++|.+|...|+++||++.|++..+..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6777777777778888888777777777 99999999 999999999999999999999987643
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.32 E-value=1.8e-06 Score=76.09 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHH
Q 045600 797 MVDLLGRTGHLNEAFIFVKKL-PCKPSV----SILESLLGACRIHGNVELGEIISGMLFEMDPEN---PGSYVMLHNIYA 868 (899)
Q Consensus 797 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 868 (899)
++..+...|++++|...+++. ...|+. ..+..++..+...|++++|+..++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555555555555555544 112221 244455555566666666666666666666665 555666666666
Q ss_pred hcCChHHHHHHHHHHHh
Q 045600 869 SAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 869 ~~g~~~eA~~~~~~~~~ 885 (899)
..|++++|++.++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666654
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.32 E-value=3.5e-06 Score=83.69 Aligned_cols=135 Identities=14% Similarity=-0.019 Sum_probs=84.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC--cchHHHHHHHHhh
Q 045600 726 VMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK--MEHYACMVDLLGR 803 (899)
Q Consensus 726 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~ 803 (899)
.+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+...... .|. ...+..+..++.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 345556666666666666666554 23543344444445666777777777776443211 111 2356667777778
Q ss_pred cCChHHHHHHHHhCC-CC--CC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 045600 804 TGHLNEAFIFVKKLP-CK--PS--VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLH 864 (899)
Q Consensus 804 ~g~~~~A~~~~~~~~-~~--p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 864 (899)
.|++++|+..+++.. .. |. ...+.....++.+.|+.++|...++++.+.+|+ +.+...|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 888888888777762 11 32 335666677778888888888888888888887 66665553
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=2.7e-06 Score=79.91 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=78.8
Q ss_pred hHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHH-HHccCCH--
Q 045600 700 YVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSA-CSHAGLV-- 772 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~-~~~~g~~-- 772 (899)
+...|++++|.+.+++.. +.+...|..+...|...|++++|++.+++..+ ..| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcch
Confidence 556788999999998876 44778999999999999999999999999988 456 55677777777 7788998
Q ss_pred HHHHHHHHHHHHcCCccC-cchHHHHHHHHhhcCChHHHHHHHHh
Q 045600 773 EQSKMVFKSMVEHGISQK-MEHYACMVDLLGRTGHLNEAFIFVKK 816 (899)
Q Consensus 773 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 816 (899)
++|...++++.+.. |+ ...+..++.+|...|++++|...+++
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999888543 32 24444444444444444444444433
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=3.4e-06 Score=75.86 Aligned_cols=109 Identities=7% Similarity=-0.059 Sum_probs=75.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 835 (899)
.+..+...+...|++++|...|++++... +.+...|..+..+|.+.|++++|...+++. ...| ++..+..++..+..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44445556666677777777776666432 223466677777777778888887777766 2233 44567777888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045600 836 HGNVELGEIISGMLFEMDPENPGSYVMLHNIY 867 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 867 (899)
.|++++|+..+++++++.|+++........+.
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 88889999999999999988887766554433
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.29 E-value=7.4e-05 Score=76.73 Aligned_cols=165 Identities=11% Similarity=-0.022 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhH
Q 045600 622 LWNAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYV 701 (899)
Q Consensus 622 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 701 (899)
.+...+..+...|++++|.+.+.+..+.... ..... . ....+..+...+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~----------------------------~~~~~~~~~~~~~ 126 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-Q----------------------------FLQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-H----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-H----------------------------HHHHHHHHHHHHh
Confidence 3445566677777888888877777664321 11110 0 0111233555667
Q ss_pred hcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC-----hhHHHHHHHHH
Q 045600 702 RCGNISMARKLFGSLIY-----KD----AFSWSVMINGYGLYGDGEAALELFKQMQLS-GVRPN-----EITYLGVLSAC 766 (899)
Q Consensus 702 ~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~~l~~~~ 766 (899)
..|++++|.+.+++... .+ ..+|+.+...|...|++++|+..+++..+. ...|+ ..++..+...|
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 77788888887776531 11 347788888888888888888888887631 01222 14677777788
Q ss_pred HccCCHHHHHHHHHHHHHcC----CccC-cchHHHHHHHHhhcCChHHH-HHHHHh
Q 045600 767 SHAGLVEQSKMVFKSMVEHG----ISQK-MEHYACMVDLLGRTGHLNEA-FIFVKK 816 (899)
Q Consensus 767 ~~~g~~~~A~~~~~~m~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~ 816 (899)
...|++++|..++++.++.. .... ...|..++.+|.+.|++++| ...+++
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 88888888888888776321 1111 35677778888888888888 555655
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=3.1e-06 Score=74.43 Aligned_cols=98 Identities=12% Similarity=-0.012 Sum_probs=88.1
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
...+..++..+...|++++|.+.+++. . .+.+...+..++..+...|++++|+..++++++..|+++.++..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 467788899999999999999999987 3 33467788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 045600 869 SAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 869 ~~g~~~eA~~~~~~~~~~~~ 888 (899)
..|++++|.+.+++..+..+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhCCHHHHHHHHHHHHhcCc
Confidence 99999999999999987554
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=1.1e-05 Score=69.32 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=72.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 835 (899)
.+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...+++. ...| +...+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444445555555555555555555322 123455666666677777777777766665 2223 45667778888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045600 836 HGNVELGEIISGMLFEMDPENPGSYVMLHNIY 867 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 867 (899)
.|+++.|...++++++.+|+++..+..++.+.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88999999999999999999888888777664
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=0.00024 Score=73.04 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=165.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHhcccC-CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhc-C-
Q 045600 629 VYVQTNKAKQAVAFFTELLGAGLEPDNV-TVLSIISAGVLIN-SLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRC-G- 704 (899)
Q Consensus 629 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g- 704 (899)
...+.+..++|+++++++...+ |+.. .++.--..+...+ .+++++..++.+.....+ +..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 3344555678999999988854 5443 3444444444556 589999999998887665 666677666666665 6
Q ss_pred CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCC-
Q 045600 705 NISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGE--------AALELFKQMQLSGVRP-NEITYLGVLSACSHAGL- 771 (899)
Q Consensus 705 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~- 771 (899)
++++++++++++. ..|...|+.-...+.+.|.++ ++++.++++.+ ..| |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcccc
Confidence 8899999999998 346678876666665555555 89999999998 466 67788888888888776
Q ss_pred ------HHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCCh--------------------HHHHHHHHhC-CC-----
Q 045600 772 ------VEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHL--------------------NEAFIFVKKL-PC----- 819 (899)
Q Consensus 772 ------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~----- 819 (899)
++++++.+++++... +-|...|..+-..+.+.|+. .+..++..++ ..
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 789999999988543 23447787777777777654 3444555555 22
Q ss_pred --CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH-hcCCCCchhHHHHHHH
Q 045600 820 --KPSVSILESLLGACRIHGNVELGEIISGMLF-EMDPENPGSYVMLHNI 866 (899)
Q Consensus 820 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~ 866 (899)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....+...+..
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 3567778899999999999999999999997 6788888777766543
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=6.8e-06 Score=79.08 Aligned_cols=152 Identities=11% Similarity=-0.039 Sum_probs=83.5
Q ss_pred hcCCHHHHHH---HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHccCCHH
Q 045600 702 RCGNISMARK---LFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLS----GVRP-NEITYLGVLSACSHAGLVE 773 (899)
Q Consensus 702 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~l~~~~~~~g~~~ 773 (899)
..|++++|.+ .+..-+......+..+...+...|++++|+..+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666666 433322223445666666666666666666666665541 1122 1234555556666677777
Q ss_pred HHHHHHHHHHHc----CCcc--CcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhhCCH
Q 045600 774 QSKMVFKSMVEH----GISQ--KMEHYACMVDLLGRTGHLNEAFIFVKKL----PCKPSV----SILESLLGACRIHGNV 839 (899)
Q Consensus 774 ~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~----~~~~~l~~~~~~~g~~ 839 (899)
+|...+++..+. +-.| ....+..+...+...|++++|...+++. ...++. ..+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777766666522 1111 1244566667777777777777666654 111121 2345666667777777
Q ss_pred HHHHHHHHHHHhcC
Q 045600 840 ELGEIISGMLFEMD 853 (899)
Q Consensus 840 ~~a~~~~~~~~~~~ 853 (899)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766553
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.23 E-value=9.1e-06 Score=71.19 Aligned_cols=111 Identities=9% Similarity=-0.084 Sum_probs=72.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRI 835 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 835 (899)
.+..+...+.+.|++++|...|++.++.. +.+...|..++.+|.+.|++++|+..+++. ...| +...+..++..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555666666666666555332 223456666777777777777777776665 3333 35567777777888
Q ss_pred hCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHh
Q 045600 836 HGNVELGEIISGMLFEMD------PENPGSYVMLHNIYAS 869 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~ 869 (899)
.|++++|+..++++++++ |+++.+...+..+..+
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 888888888888888888 7777777777666543
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.7e-05 Score=71.58 Aligned_cols=110 Identities=11% Similarity=-0.032 Sum_probs=70.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK----MEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLG 831 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 831 (899)
.+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344444444445555555555554442 2233 345555666666666666666666655 2223 4556777778
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 832 ACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 832 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
.+...|++++|...++++++.+|+++.++..+..+..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888899999999999999999988888777766543
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=3.8e-06 Score=77.60 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 825 ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.+..+..++...|+++.|+..++++++++|+++.+++.++.+|...|++++|+..+++..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 455555556666666666666666666666666666666666666666666666666655433
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=1.1e-05 Score=74.48 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=48.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+..+...+.+.|++++|++.+++. ...| +...+..+...+...|++++|+..++++++++|+++.++..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555544 2222 334445555555555555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 045600 870 AGRWEDAYRVRSCMKR 885 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~ 885 (899)
.|++++|++.|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555544
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.20 E-value=5.3e-05 Score=77.56 Aligned_cols=188 Identities=10% Similarity=0.033 Sum_probs=142.9
Q ss_pred hcCCH-HHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 045600 702 RCGNI-SMARKLFGSLI--YK-DAFSWSVMINGYGLYGD----------GEAALELFKQMQLSGVRP-NEITYLGVLSAC 766 (899)
Q Consensus 702 ~~g~~-~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~ 766 (899)
+.|.+ ++|+++++.+. .| +..+|+.--..+...++ +++++.+++.+.. ..| +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~--~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 34444 47888888887 33 44566654444433332 6789999999988 567 667888888888
Q ss_pred HccC--CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCC-hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhh-----
Q 045600 767 SHAG--LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGH-LNEAFIFVKKL--PCKPSVSILESLLGACRIH----- 836 (899)
Q Consensus 767 ~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~----- 836 (899)
...| ++++++.+++++.+.. +-+...|+.-..++...|. ++++++.++++ ...-+...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 8877 4899999999999644 3345788888888888888 58999999888 3445667788777666554
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCccCCCccc
Q 045600 837 ---------GNVELGEIISGMLFEMDPENPGSYVMLHNIYASA-----------GRWEDAYRVRSCMKRSRLKKVPGFSL 896 (899)
Q Consensus 837 ---------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-----------g~~~eA~~~~~~~~~~~~~~~~~~~~ 896 (899)
+.++.+...+++++..+|+|.++++.+..++.+. +.++++++.++++.+.. |.+-|
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~----pd~~w 273 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE----PENKW 273 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC----TTCHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC----cccch
Confidence 4578899999999999999999999998888877 56899999999998643 45555
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=1.4e-06 Score=75.37 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 045600 804 TGHLNEAFIFVKKL-PC---KPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYR 878 (899)
Q Consensus 804 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~ 878 (899)
.|++++|+..+++. .. .|+ ...+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555554 22 122 23455666666666666667777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 045600 879 VRSCMKRS 886 (899)
Q Consensus 879 ~~~~~~~~ 886 (899)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666543
No 167
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=1.1e-05 Score=74.51 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=87.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-P-CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.+|..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 55777889999999999999999987 3 334577888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 045600 870 AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 870 ~g~~~eA~~~~~~~~~~~~ 888 (899)
.|++++|++.++++.+..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST
T ss_pred hccHHHHHHHHHHHHHhCC
Confidence 9999999999999987554
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=9.8e-06 Score=89.07 Aligned_cols=160 Identities=13% Similarity=-0.020 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHhcC--C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 045600 704 GNISMARKLFGSLI--Y-KDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFK 780 (899)
Q Consensus 704 g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~ 780 (899)
+++++|.+.|+... . .....|..+...+.+.|++++|+..|++..+ +.|+...+ ..+...+ .+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HH
Confidence 34444544444333 1 2345677777888888888888888888776 33332110 0000000 00
Q ss_pred HHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 781 SMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 781 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
. .....|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|+..++++++++|+++.
T Consensus 314 ~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 314 S-------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred H-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 0 01356777888888888888888888877 3333 5667888889999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHH-HHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYR-VRSCMK 884 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~-~~~~~~ 884 (899)
++..++.++.+.|++++|.+ .+++|.
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874 455443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=6.8e-06 Score=72.26 Aligned_cols=111 Identities=5% Similarity=-0.047 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CC----CCC----HHHHH
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PC----KPS----VSILE 827 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 827 (899)
..+..+...+...|++++|...+++..+.. +.+...+..++.+|...|++++|...++++ .. .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356666667777777777777777777543 223456666777777777777777776665 11 122 44566
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 828 SLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 828 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
.++..+...|+++.|...++++++..| ++.....+..++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 666666677777777777777777666 45555555555443
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.2e-05 Score=73.85 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC------CCch
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL----PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDP------ENPG 858 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 858 (899)
.+..++..+...|++++|.+.+++. ...++ ...+..+...+...|++++|...++++++..+ ..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555544443 00111 22345556666677777777777777665532 2245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 788899999999999999999998765
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=5.9e-05 Score=84.71 Aligned_cols=170 Identities=11% Similarity=-0.005 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHc
Q 045600 703 CGNISMARKLFGSLI--YK-DAFSWSVMINGYGLYGD----------GEAALELFKQMQLSGVRP-NEITYLGVLSACSH 768 (899)
Q Consensus 703 ~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~ 768 (899)
...-++|.+.++++. .| +...|+.--..+...|+ ++++++.++++.+ ..| +..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 344577888888887 33 56678877777766666 8999999999998 677 55688888888888
Q ss_pred cC--CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh-------
Q 045600 769 AG--LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG-HLNEAFIFVKKL-PCKP-SVSILESLLGACRIH------- 836 (899)
Q Consensus 769 ~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 836 (899)
.| +++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| +...|......+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 89 7799999999999654 234588888888888888 899999999988 4444 566788777776553
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHH
Q 045600 837 -------GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWED 875 (899)
Q Consensus 837 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~e 875 (899)
+.++++.+.++++++.+|++..+|+.+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999998655
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.13 E-value=1.5e-05 Score=70.99 Aligned_cols=113 Identities=6% Similarity=-0.131 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 045600 756 EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGAC 833 (899)
Q Consensus 756 ~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 833 (899)
...+..+...+...|++++|...|++.++.. +.+...|..++.++...|++++|...+++. ...| +...+..++..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4455555555666666666666666655432 123356666667777777777777766665 2223 455677777777
Q ss_pred HhhCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHh
Q 045600 834 RIHGNVELGEIISGMLFEMDPE-----NPGSYVMLHNIYAS 869 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~y~~ 869 (899)
...|+++.|+..++++++..|+ +..+...+..+..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888777 55555555554443
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.09 E-value=6.3e-06 Score=90.98 Aligned_cols=116 Identities=9% Similarity=-0.023 Sum_probs=88.6
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHH
Q 045600 765 ACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELG 842 (899)
Q Consensus 765 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 842 (899)
.+.+.|++++|.+.+++.++.. +.+...|..++.+|.+.|++++|.+.+++. ...| +...+..++..+...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556677777777777776432 223467777888888888888888888776 3344 456788888999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHH--HHhcCChHHHHHHHH
Q 045600 843 EIISGMLFEMDPENPGSYVMLHNI--YASAGRWEDAYRVRS 881 (899)
Q Consensus 843 ~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~eA~~~~~ 881 (899)
+..++++++++|+++.++..++.+ +.++|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999998 889999999999988
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.08 E-value=1.7e-05 Score=80.91 Aligned_cols=113 Identities=4% Similarity=-0.161 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 045600 755 NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS-VSILESLLGA 832 (899)
Q Consensus 755 ~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 832 (899)
+...+..+...+...|++++|...|++.++.. +.+...|..++.+|.+.|++++|.+.+++. ...|+ ...+..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566666777777788888888777777432 123466777777777777777777777765 44443 4556677777
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045600 833 CRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA 868 (899)
Q Consensus 833 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 868 (899)
+...|++++|+..++++++++|+++..+...++...
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 777777777777777777777766555444444443
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.3e-05 Score=85.86 Aligned_cols=163 Identities=9% Similarity=-0.060 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChh----HHHHHHHHHHccCCHHHHHHHHHHHHH----cCCccC-cc
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSG-VRPNEI----TYLGVLSACSHAGLVEQSKMVFKSMVE----HGISQK-ME 792 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~ 792 (899)
.+..+...|...|++++|.+.+.++...- ..++.. ..+.+...+...|++++|..+++.... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777888888888888777765521 112221 122222344466888888888887762 222222 25
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-----CC--CCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC---CC----c
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-----PC--KPS-VSILESLLGACRIHGNVELGEIISGMLFEMDP---EN----P 857 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~ 857 (899)
++..++..|...|++++|..++++. +. ++. ...+..++..|...|++++|...+++++...+ .. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6777888999999999998888765 11 222 33577778889999999999999998887642 22 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 858 GSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 858 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
..+..++..+...|++++|.+.+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567788888899999999988877754
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=2.9e-05 Score=67.98 Aligned_cols=59 Identities=14% Similarity=-0.032 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
.+..+...+.+.|++++|++.|++..+ +.| +...|..+..+|...|++++|++.+++.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 455666677777777777777777766 455 34456666666777777777777776666
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=4.7e-06 Score=87.54 Aligned_cols=152 Identities=9% Similarity=-0.043 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHH
Q 045600 721 AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDL 800 (899)
Q Consensus 721 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 800 (899)
...+..+...+.+.|++++|+..|++..+ +.|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 45677788888899999999999999887 4565432 223344444433221 2367889999
Q ss_pred HhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-hcCChHHHH
Q 045600 801 LGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYA-SAGRWEDAY 877 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~~eA~ 877 (899)
|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|+++.++..|+.+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4444 56788899999999999999999999999999999999999999854 567888889
Q ss_pred HHHHHHHhCCCccC
Q 045600 878 RVRSCMKRSRLKKV 891 (899)
Q Consensus 878 ~~~~~~~~~~~~~~ 891 (899)
..|++|.+..+...
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999886555443
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=1.2e-05 Score=84.49 Aligned_cols=66 Identities=9% Similarity=-0.115 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 823 VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
...+..+...+...|++++|+..++++++++|+++.+++.++.+|...|++++|+..|+++.+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 357888999999999999999999999999999999999999999999999999999999987554
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.03 E-value=2.6e-05 Score=74.66 Aligned_cols=65 Identities=12% Similarity=-0.063 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 824 SILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
..+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 56788889999999999999999999999999999999999999999999999999999987544
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=3.6e-05 Score=65.25 Aligned_cols=100 Identities=13% Similarity=-0.000 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP---SVSILESLLGA 832 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 832 (899)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|.+.+++. ...| +...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455555666666677777777776666432 223456666777777777777777777766 3333 35667777777
Q ss_pred HHhh-CCHHHHHHHHHHHHhcCCCCc
Q 045600 833 CRIH-GNVELGEIISGMLFEMDPENP 857 (899)
Q Consensus 833 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 857 (899)
+... |+.++|.+.++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 888888888888888877654
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=2.2e-05 Score=83.31 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcc-CcchHHHHHHH
Q 045600 722 FSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQ-KMEHYACMVDL 800 (899)
Q Consensus 722 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 800 (899)
..|..+...+.+.|++++|++.|++..+. .|+.. .....+++ . ...| +...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~--~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------A--KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------G--GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------H--HHHHHHHHHHHHHHHH
Confidence 34666666777777777777777766641 11000 00000000 0 1222 23678889999
Q ss_pred HhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 045600 801 LGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYR 878 (899)
Q Consensus 801 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~ 878 (899)
|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++...++.++|.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5555 466788899999999999999999999999999999999999999999998888765
Q ss_pred H
Q 045600 879 V 879 (899)
Q Consensus 879 ~ 879 (899)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=6.4e-05 Score=65.86 Aligned_cols=109 Identities=13% Similarity=0.000 Sum_probs=70.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCccCc---chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 045600 762 VLSACSHAGLVEQSKMVFKSMVEHGISQKM---EHYACMVDLLGRTGHLNEAFIFVKKL-PCKPS----VSILESLLGAC 833 (899)
Q Consensus 762 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 833 (899)
+...+...|++++|...|+++.+.... +. ..+..++.++.+.|++++|...+++. ...|+ +..+..++..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344555666666666666666543211 11 35666777777777777777777665 22233 45567777888
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 045600 834 RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAG 871 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 871 (899)
...|+.++|+..++++++..|+++.+...+..+-.-.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 88899999999999999998888776665554444333
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=1.5e-05 Score=87.08 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=64.1
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCC
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL---------PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEM-----DPEN 856 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 856 (899)
.+++.|+.+|...|++++|..++++. +..|+.. +++.|+..|...|++++|+.++++++++ .|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45555555555566666655555443 2223322 3566666666777777777777666654 3665
Q ss_pred ch---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 045600 857 PG---SYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVP 892 (899)
Q Consensus 857 ~~---~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 892 (899)
|. ....|..++..+|++++|..+|+++++.-.++.|
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 54 4467888899999999999999999875544443
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.99 E-value=2e-05 Score=69.13 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--ccC----cchHH
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGI--SQK----MEHYA 795 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 795 (899)
.|..+...+...|++++|+..+++..+. .| +...+..+...+...|++++|...++++.+... .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555555555555555555555542 23 334455555555555555555555555553211 111 33444
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 045600 796 CMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 796 ~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
.++.++...|++++|.+.+++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 5555555555555555555544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=7.4e-06 Score=70.65 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHcCC-cc-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHH
Q 045600 769 AGLVEQSKMVFKSMVEHGI-SQ-KMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEI 844 (899)
Q Consensus 769 ~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 844 (899)
.|++++|...|++.++.+. .| +...+..++.+|...|++++|.+.+++. ...| ++..+..++..+...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666664321 12 2366677777777778888887777776 3333 45567777788888888888888
Q ss_pred HHHHHHhcCCCCchhHHH
Q 045600 845 ISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 845 ~~~~~~~~~p~~~~~~~~ 862 (899)
.++++++..|+++.....
T Consensus 83 ~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 888888888888776543
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=4e-05 Score=63.67 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 821 PSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
.++..+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356678889999999999999999999999999999999999999999999999999999988754
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=8.8e-06 Score=72.48 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHH
Q 045600 768 HAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISG 847 (899)
Q Consensus 768 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 847 (899)
+.+.+++|.+.+++.++.. +.+...|..+..++...|+++.+...++ .+++|+..++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~le 70 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHHHH
Confidence 3445555666655555332 1233555555555555554433322211 2678999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCCc
Q 045600 848 MLFEMDPENPGSYVMLHNIYASAG-----------RWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 848 ~~~~~~p~~~~~~~~l~~~y~~~g-----------~~~eA~~~~~~~~~~~~~ 889 (899)
++++++|+++.+|+.+|.+|...| ++++|++.|+++.+..+.
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999875 899999999999876553
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=2.8e-05 Score=71.62 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=64.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHH
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENP-GSYVMLHNIYA 868 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~ 868 (899)
..|..++.+|.+.|++++|+..+++. ...| +...+..++.++...|+++.|+..++++++++|+++ .+...+..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 67788888999999999999888877 3344 466788889999999999999999999999999988 66666666655
Q ss_pred hcC
Q 045600 869 SAG 871 (899)
Q Consensus 869 ~~g 871 (899)
..+
T Consensus 144 ~~~ 146 (162)
T 3rkv_A 144 RRA 146 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=3.8e-06 Score=71.54 Aligned_cols=93 Identities=11% Similarity=-0.059 Sum_probs=75.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHH
Q 045600 791 MEHYACMVDLLGRTGHLNEAFIFVKKL-PCK-PSVSILESLLGACRIHGNVELGEIISGMLFEMDPEN------PGSYVM 862 (899)
Q Consensus 791 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 862 (899)
...+..++..+.+.|++++|.+.+++. ... .+...+..++..+...|++++|+..++++++++|++ +.++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667778888888888888888776 333 356678888888999999999999999999999998 888899
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 045600 863 LHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 863 l~~~y~~~g~~~eA~~~~~~~ 883 (899)
++.++...|++++|++.++++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHhHhhhHhHHHHh
Confidence 999999999888887666543
No 190
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.90 E-value=5.2e-05 Score=65.67 Aligned_cols=98 Identities=8% Similarity=0.055 Sum_probs=59.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh
Q 045600 759 YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIH 836 (899)
Q Consensus 759 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 836 (899)
+..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|+..+++. ...| +...+..++..+...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3344455666666666666666666432 123466666777777777777777777666 3334 345666777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 045600 837 GNVELGEIISGMLFEMDPENP 857 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~ 857 (899)
|+.++|+..++++++.+|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 788888888888887777654
No 191
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.86 E-value=5.4e-05 Score=61.45 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 820 KPSVSILESLLGACRIHGN---VELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
.+++..+..+..++...++ .++|...++++++.+|+++.++..+|..+.+.|++++|+.+|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567777888877765554 799999999999999999999999999999999999999999999986654
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.83 E-value=4.7e-05 Score=65.22 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=53.1
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 810 AFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 810 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
|++.+++. ...| +...+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|+..+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444 3333 45566677777777777777777777777777777777777777777777777777777776543
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.82 E-value=0.00016 Score=64.27 Aligned_cols=112 Identities=7% Similarity=-0.086 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHH
Q 045600 770 GLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRI----HGNVELGEII 845 (899)
Q Consensus 770 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 845 (899)
+++++|.++|++..+.| .| ... +...|...+..++|++++++.....++.....+...|.. .+|.++|...
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34566666666666555 22 222 666666667777777777766333556666777777766 7788888888
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 045600 846 SGMLFEMDPENPGSYVMLHNIYAS----AGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 846 ~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~~ 888 (899)
++++.+. .++.+.+.|+.+|.. .+++++|++++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888876 668889999999998 8999999999999887764
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=2.8e-05 Score=81.54 Aligned_cols=117 Identities=8% Similarity=-0.043 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIH 836 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 836 (899)
..+..+...+.+.|++++|...|++.++.. |+.. .+...|+.+++...+.. ..+..+...+.+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 456667777788888888888888877432 2221 12344455555443321 3678888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
|+++.|+..++++++++|+++.+++.++.+|...|++++|+..|+++.+..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999998765543
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=9.9e-05 Score=67.46 Aligned_cols=132 Identities=15% Similarity=0.039 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCccC-cc
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLSGVR-PN----EITYLGVLSACSHAGLVEQSKMVFKSMVEH----GISQK-ME 792 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~ 792 (899)
++..+...+...|++++|++.+++..+..-. ++ ..++..+...+...|++++|...+++..+. +..+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432100 11 124444555555666666666666555421 11111 23
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL----PCKPS----VSILESLLGACRIHGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 854 (899)
.+..++..+...|++++|.+.+++. ....+ ...+..+...+...|+.++|...++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4555666666677777766666554 11111 22455666777778888888888877776543
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.80 E-value=4.6e-05 Score=68.04 Aligned_cols=74 Identities=16% Similarity=-0.014 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CC-------CCCHH-HH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 045600 793 HYACMVDLLGRTGHLNEAFIFVKKL-PC-------KPSVS-IL----ESLLGACRIHGNVELGEIISGMLFEMDPENPGS 859 (899)
Q Consensus 793 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 859 (899)
.|..+..++.+.|++++|+..+++. .. .|+.. .| ...+.++...|++++|+..|+++++++|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666777777777777777666655 33 77654 67 888999999999999999999999999999888
Q ss_pred HHHHHHH
Q 045600 860 YVMLHNI 866 (899)
Q Consensus 860 ~~~l~~~ 866 (899)
...+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 7766444
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.80 E-value=4.9e-05 Score=83.49 Aligned_cols=116 Identities=8% Similarity=-0.093 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIH 836 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 836 (899)
..+..+...+.+.|++++|...|++.++.. |+...+ .-++..+ .+. -....|..+..++.+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~----~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SES----FLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHH----HHHHHHHHHHHHHHHh
Confidence 355666666667777777777777666321 111100 0000000 000 0135678888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 045600 837 GNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 837 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 890 (899)
|+++.|+..++++++++|+++.+++.++.+|...|++++|+..|+++.+..+..
T Consensus 331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999998765543
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00022 Score=77.95 Aligned_cols=157 Identities=8% Similarity=-0.042 Sum_probs=116.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-C---------------hhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCccCc
Q 045600 729 NGYGLYGDGEAALELFKQMQLSGVRP-N---------------EITYLGVLSACSHAGLVEQSKMVFKSMVEH-GISQKM 791 (899)
Q Consensus 729 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~---------------~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~ 791 (899)
..+.+.|++++|++.|.++.+..-.. + ...+..+...|...|++++|.+++..+... +-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34566788888888888887742211 1 023677888999999999999999988732 111111
Q ss_pred ----chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------
Q 045600 792 ----EHYACMVDLLGRTGHLNEAFIFVKKL-------PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMD------ 853 (899)
Q Consensus 792 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 853 (899)
.+...+...+...|+.++|.+++++. +..+. ..++..++..+...|+++.|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23444556667789999998887765 33333 4567888999999999999999999987653
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 854 PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 854 p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23355889999999999999999999998764
No 199
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.77 E-value=0.00011 Score=80.91 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=72.2
Q ss_pred HHhHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHH
Q 045600 698 DSYVRCGNISMARKLFGSLI---YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVE 773 (899)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~ 773 (899)
..+.+.|++++|.+.+++.. ..+...|..+..+|.+.|++++|++.+++..+ +.| +...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566777777777777765 23466777777777777777777777777776 455 3456666777777777777
Q ss_pred HHHHHHHHHHHcCCccCcchHHHHHHH--HhhcCChHHHHHHHH
Q 045600 774 QSKMVFKSMVEHGISQKMEHYACMVDL--LGRTGHLNEAFIFVK 815 (899)
Q Consensus 774 ~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 815 (899)
+|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776432 1122444445444 666677777777666
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.00046 Score=77.42 Aligned_cols=154 Identities=10% Similarity=-0.002 Sum_probs=127.4
Q ss_pred hCC-CHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCccCcchHHHHHHH
Q 045600 733 LYG-DGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGL----------VEQSKMVFKSMVEHGISQKMEHYACMVDL 800 (899)
Q Consensus 733 ~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 800 (899)
+.| ..++|++.++++.+ ..|+. ..|+.--.++...|+ ++++++.++++.+.. +.+...|..-..+
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344 45788999999998 78855 467777667777777 999999999999644 2344888888899
Q ss_pred HhhcC--ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-----
Q 045600 801 LGRTG--HLNEAFIFVKKL-P-CKPSVSILESLLGACRIHG-NVELGEIISGMLFEMDPENPGSYVMLHNIYASA----- 870 (899)
Q Consensus 801 ~~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----- 870 (899)
+.+.| +++++++.++++ . ..-+...|..-.......| ..+++.+.++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999 779999999998 3 3446678988888888888 899999999999999999999999999999885
Q ss_pred ---------CChHHHHHHHHHHHhCCCc
Q 045600 871 ---------GRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 871 ---------g~~~eA~~~~~~~~~~~~~ 889 (899)
+++++|+++++++.+..+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 6689999999998875554
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00014 Score=58.75 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=52.5
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PC-KPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYAS 869 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 869 (899)
..+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++.+|+++.++..++.+|..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34555556666666666666666554 22 22445566667777777777777777777777777777777777777765
Q ss_pred cC
Q 045600 870 AG 871 (899)
Q Consensus 870 ~g 871 (899)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.71 E-value=8.2e-05 Score=78.87 Aligned_cols=114 Identities=7% Similarity=-0.040 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKP-SVSILESLLGACRI 835 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 835 (899)
..+..+...+.+.|++++|...|++.++.- +.. ......+++. ...| +...+..+...+.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 356667777778888888888887776321 000 0001111111 1122 34568888899999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 836 HGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 836 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
.|++++|+..++++++++|+++.+++.++.+|...|++++|++.++++.+..+
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999987554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00014 Score=61.61 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 821 PSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
++...+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..+..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 345678888899999999999999999999999999999999999999999999999999999876554
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.00028 Score=56.97 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 823 VSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456778888999999999999999999999999999999999999999999999999999987544
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.29 E-value=0.0011 Score=72.35 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=51.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH-----cC-CccCc-chHHHHHHHHhhcCChHHHHHHHHhC---------CCCC
Q 045600 758 TYLGVLSACSHAGLVEQSKMVFKSMVE-----HG-ISQKM-EHYACMVDLLGRTGHLNEAFIFVKKL---------PCKP 821 (899)
Q Consensus 758 t~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p 821 (899)
+++.|..+|..+|++++|..++++.++ .| -.|+. .+++.|+..|...|++++|..++++. +..|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444444455555555555555544431 11 11222 56666777777777777776666554 1223
Q ss_pred CHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 045600 822 SVSI-LESLLGACRIHGNVELGEIISGMLFEM 852 (899)
Q Consensus 822 ~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 852 (899)
+... ...+...+...+.++.|+.+++++.+.
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 334445555677777777777777653
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0019 Score=57.09 Aligned_cols=112 Identities=8% Similarity=-0.126 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhh----cCChHHH
Q 045600 735 GDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGR----TGHLNEA 810 (899)
Q Consensus 735 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 810 (899)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788888888888876 33333 6666777778888999998888765 45667778888887 7889999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCC
Q 045600 811 FIFVKKLPCKPSVSILESLLGACRI----HGNVELGEIISGMLFEMDP 854 (899)
Q Consensus 811 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 854 (899)
++++++....-++.....|...|.. .+|.++|...++++.+...
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999887444567777888888877 7899999999999988753
No 207
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.28 E-value=0.019 Score=47.99 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=99.0
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc---chHHHHHHHHhhcCCh
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM---EHYACMVDLLGRTGHL 807 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~ 807 (899)
+.-.|.+++..++..+... ..+..-||.++--....-+-+-..+.++.+ |-..|. .....++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDis~C~NlKrVi~C~~~~n~- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDLDKCQNLKSVVECGVINNT- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCGGGCSCTHHHHHHHHHTTC-
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHH---hhhcCcHhhhcHHHHHHHHHHhcc-
Confidence 3456888888888888775 234556666666555555555555555554 322222 333445555555443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 808 NEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 808 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
++......+.....+|+.+...+++..++..++.+|..+.-++.+|.+.|+..+|.+++.++=++|
T Consensus 90 --------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 --------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp --------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344566677888899999999999999888888899999999999999999999999999999999
Q ss_pred Ccc
Q 045600 888 LKK 890 (899)
Q Consensus 888 ~~~ 890 (899)
++.
T Consensus 156 ~kE 158 (172)
T 1wy6_A 156 EKE 158 (172)
T ss_dssp CHH
T ss_pred hHH
Confidence 863
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.27 E-value=0.00068 Score=55.82 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 045600 796 CMVDLLGRTGHLNEAFIFVKKL-PCKP-SVS-ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGR 872 (899)
Q Consensus 796 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 872 (899)
..+..+.+.|++++|.+.+++. ...| +.. .+..++..+...|++++|+..++++++++|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3566777888888888888876 3334 455 77778888888888888888888888888888877633 45
Q ss_pred hHHHHHHHHHHH
Q 045600 873 WEDAYRVRSCMK 884 (899)
Q Consensus 873 ~~eA~~~~~~~~ 884 (899)
+.+|+..+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 566666665543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.0018 Score=66.39 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCCccccc
Q 045600 819 CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKKVPGFSLVG 898 (899)
Q Consensus 819 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 898 (899)
...++..+..+...+...|+++.|...++++++++| +...|..+++++.-.|++++|.+.+++....++.. |.+-|.|
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~-~t~~~~~ 350 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA-NTLYWIE 350 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH-HHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-ChHHHHh
Confidence 345666777777777778999999999999999996 47788899999999999999999999988766644 4555543
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.00069 Score=60.31 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=84.7
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCH----------HHHHHHHHHHHHcCCccCc-chHHHHH
Q 045600 731 YGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLV----------EQSKMVFKSMVEHGISQKM-EHYACMV 798 (899)
Q Consensus 731 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~-~~~~~l~ 798 (899)
..+.+.+++|++.+++..+ +.| +...|..+..++...+++ ++|+..|++.++. .|+. ..|..+.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3455678999999999998 678 566888888888888765 4777777777743 3443 6677777
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 045600 799 DLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYR 878 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~ 878 (899)
.+|...|.+ .|+.. ...|++++|+..++++++++|++......+- ..++|-+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 777666543 34431 1137899999999999999999865444332 2345555
Q ss_pred HHHHHHhC
Q 045600 879 VRSCMKRS 886 (899)
Q Consensus 879 ~~~~~~~~ 886 (899)
+.-.+...
T Consensus 140 l~~~~~~~ 147 (158)
T 1zu2_A 140 LHAEAYKQ 147 (158)
T ss_dssp HHHHHHHS
T ss_pred ccCccccc
Confidence 55555443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.09 E-value=0.00054 Score=56.43 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=43.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPG-SYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
.+..+...|++++|+..++++++.+|+++. ++..++.+|...|++++|++.+++..+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344566777777777777777777777777 777777777777777777777777766544
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.07 E-value=0.0021 Score=54.66 Aligned_cols=64 Identities=6% Similarity=-0.071 Sum_probs=35.5
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPE 855 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 855 (899)
..+..++..|...|++++|...+++. ...| +...|..++..+...|+++.|...++++++..|.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 44445555555555555555555544 2222 3445555666666666666666666666666553
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.04 E-value=0.0022 Score=66.72 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=121.4
Q ss_pred chhhhhHHHHHHHhcCChHHHHHHhccCC--CCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 045600 181 NLVIQTALVDFYAKKGEMLTARLLFDQIP--LADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVSTFSSVIPVC 258 (899)
Q Consensus 181 ~~~~~~~l~~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 258 (899)
|+..|..++....+.|.+++-.+.+.... .++...=+.|+-+|++.|+..+-.+++ -.||..-...+-+-|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHH
Confidence 34444455555555555555444443332 223333344555555555443322221 124444444444444
Q ss_pred hccCChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 045600 259 TRLGHFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFR 338 (899)
Q Consensus 259 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 338 (899)
...|.++.|+-+|.. +.-|..|...+.+.|++..|.+.-++ ..++.+|..+-.+|...+.+.-|.-.--
T Consensus 155 f~e~lYeAAKilys~---------isN~akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGL 223 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGL 223 (624)
T ss_dssp HHSCCSTTSSTTGGG---------SCCCTTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHH
T ss_pred HHccCHHHHHHHHHh---------CccHHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcc
Confidence 444444444443322 12233333344444444444322111 2467789999999999998877655433
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhccCCcccchHHHHHHHHhCC-CCchhHHHHHHHHHHhcCChHHHHHHHhc----CCCC
Q 045600 339 QMIRAEMQPDLVTFVSIIPSCENYCSFQCGESLTACVIKNGL-GNQPSVLTALLSMYAKLGNIDSAKFLFDQ----IPNR 413 (899)
Q Consensus 339 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~ 413 (899)
...- .|| -...++.-|-..|.+++-..+++.-. |+ .....++|-|.-.|+|-. +++..+-++. +.-|
T Consensus 224 niIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNip 295 (624)
T 3lvg_A 224 HIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP 295 (624)
T ss_dssp HHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCT
T ss_pred hhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHH
Confidence 3331 122 12345556777888888777777655 33 356778899998898873 3444333332 2222
Q ss_pred -------CcchHHHHHHHHHHCCChhHHH
Q 045600 414 -------NLLCWNAMMSAYVRNRFWDASL 435 (899)
Q Consensus 414 -------~~~~~~~li~~~~~~g~~~~A~ 435 (899)
....|.-++-.|.+...++.|.
T Consensus 296 KviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 296 KVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3346888888888877777664
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.00069 Score=72.70 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhc-----CC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEM-----DP---ENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p---~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
++.++..|...|++++|+.+++++++. .| +-...+++|+.+|..+|+++||+.++++..+
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 444445555555555555555554443 23 3455788999999999999999999998765
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.0016 Score=70.13 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEM-----DPE---NPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~---~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
++.++..|...|++++|+.+++++++. .|+ -...+++|+.+|..+|++++|+.+++++.+
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444444455555555555555554433 233 445778899999999999999999888764
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.0028 Score=55.68 Aligned_cols=92 Identities=13% Similarity=0.032 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhhCCHHHHH
Q 045600 771 LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTG---HLNEAFIFVKKL-PCK-P--SVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
....+.+.|.+..+.+. ++..+...+..++++.+ +.++++.++++. ... | ....+..+.-++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 45566666666665443 56677777788888877 555777777766 222 4 2345666667777888888888
Q ss_pred HHHHHHHhcCCCCchhHHHH
Q 045600 844 IISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l 863 (899)
+.++++++.+|+|..+....
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 88888888888777666544
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.77 E-value=0.024 Score=58.14 Aligned_cols=136 Identities=12% Similarity=-0.035 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHH--HhCC---CHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHH---ccC--CHHHHH---HHHHHHHHc
Q 045600 720 DAFSWSVMINGY--GLYG---DGEAALELFKQMQLSGVRPNE-ITYLGVLSACS---HAG--LVEQSK---MVFKSMVEH 785 (899)
Q Consensus 720 ~~~~~~~li~~~--~~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~---~~g--~~~~A~---~~~~~m~~~ 785 (899)
+...|...+.+. ...+ +..+|+.+|++..+ +.|+. ..|..+.-+|. ..+ ...... ..++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 445555555443 2323 34678888888888 67864 34444443332 111 111111 122221111
Q ss_pred C-CccCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 045600 786 G-ISQKMEHYACMVDLLGRTGHLNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENP 857 (899)
Q Consensus 786 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 857 (899)
. .+.+...|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|++.+++++.++|..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1 2334577777777777789999999999988 4558877777778888899999999999999999999764
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.77 E-value=0.0053 Score=64.00 Aligned_cols=397 Identities=9% Similarity=0.044 Sum_probs=230.5
Q ss_pred CCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 045600 281 FDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDLVTFVSIIPSCE 360 (899)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 360 (899)
..+.+|+.|..+..+.|.+.+|.+.| +...|+..|..+|.+..+.|++++-+..+...++..-.| ..=+.++-+++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 45667888888888888877777654 334566778888888888888888888777666553333 33446777788
Q ss_pred ccCCcccchHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC------------------------CCcc
Q 045600 361 NYCSFQCGESLTACVIKNGLGNQPSVLTALLSMYAKLGNIDSAKFLFDQIPN------------------------RNLL 416 (899)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 416 (899)
+.+++.+-++++. .|+..-.....+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8777766555442 34554455667777777888877777776653 4677
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 045600 417 CWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYS 496 (899)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 496 (899)
+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++.-+. --.....+++-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg-lErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT-STTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC-CCchhHHHHHHHHHHHH
Confidence 899999999999988776544333332 222 233456667788888887777766552 11346667888888887
Q ss_pred cCCChHHHHHHHhhcCC----C-------ChhhHHHHHHHHHhcCCHHHHHHHHH-------------HHHHcCCCCCHH
Q 045600 497 DGGQFSYAFTLFHRMST----R-------SSVSWNTLISRCVQNGAVEEAVILLQ-------------RMQKEGVELDMV 552 (899)
Q Consensus 497 ~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~-------------~m~~~g~~p~~~ 552 (899)
|- +.++-++.++..-. | ....|.-++-.|.+..+++.|....- +... -..+..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~E 351 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVE 351 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHH
Confidence 75 44555555443322 2 45578888888888888887653221 1111 112333
Q ss_pred HHHHHHHHHh---------------cCCChHHHHHHHHHHHHh----------CCCCChhHHHHHHHHHHhcCChhhhhh
Q 045600 553 TLISFLPNLN---------------KNGNIKQGMVIHGYAIKT----------GCVADVTFLNALITMYCNCGSTNDGRL 607 (899)
Q Consensus 553 t~~~ll~~~~---------------~~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 607 (899)
.|...|.-|. ..=+...+.+++...-.. .-..+..+-.++-+.|....+++.-+
T Consensus 352 iyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR- 430 (624)
T 3lvg_A 352 LYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR- 430 (624)
T ss_dssp HHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHH-
T ss_pred HHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH-
Confidence 3333333333 222223222222211000 01123344455556666666655433
Q ss_pred HHHHhhcCCCCChh------------hH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHH
Q 045600 608 CLLLFQMGDKREIS------------LW-NAIISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLT 674 (899)
Q Consensus 608 ~~~~~~~~~~~~~~------------~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 674 (899)
...+.-..-|.. -+ ..-...|.+.+++++++++.++ ...|.-.|.....+++.+.+
T Consensus 431 --~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~ela 499 (624)
T 3lvg_A 431 --TSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELA 499 (624)
T ss_dssp --HTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHH
T ss_pred --HHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHH
Confidence 222222111211 11 2223345556666666554321 12233345566778888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHH
Q 045600 675 HSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKL 712 (899)
Q Consensus 675 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 712 (899)
.++++...+.|- ...+.+.+-.|...=++|-+.++
T Consensus 500 eeLL~yFv~~g~---~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 500 EELLQWFLQEEK---RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHCS---THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHcCc---hHHHHHHHHHHhhccChHHHHHH
Confidence 888888888773 34455555555555566666655
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.61 E-value=0.0074 Score=49.62 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 720 DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 720 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
+...|..+...|...|++++|++.|++..+ ..| +...|..+..+|...|++++|.+.+++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666777777777777777777766 345 33456666666677777777777776665
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.56 E-value=0.007 Score=64.88 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=33.5
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCC
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL---------PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEM-----DPEN 856 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 856 (899)
.+++.++.+|...|++++|..++++. +..|+.. +++.|+..|...|++++|+.++++++++ .|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444444444444444444433 1223322 3555555555566666666665555553 3555
Q ss_pred chhH
Q 045600 857 PGSY 860 (899)
Q Consensus 857 ~~~~ 860 (899)
|.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5444
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.42 E-value=0.015 Score=62.46 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=37.7
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCC
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL---------PCKPSVS-ILESLLGACRIHGNVELGEIISGMLFEM-----DPEN 856 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 856 (899)
.+++.++.+|...|++++|..++++. +..|+.. +++.|+..|...|++++|+.+++++++. .|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555555555555555554433 1223322 3555666666666666666666666654 4666
Q ss_pred chhHHH
Q 045600 857 PGSYVM 862 (899)
Q Consensus 857 ~~~~~~ 862 (899)
|.+-..
T Consensus 410 p~~~~~ 415 (429)
T 3qwp_A 410 SLIEDL 415 (429)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 655543
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.42 E-value=0.15 Score=60.55 Aligned_cols=153 Identities=11% Similarity=0.080 Sum_probs=94.7
Q ss_pred HHHcCCHHHHHH-HHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHH
Q 045600 630 YVQTNKAKQAVA-FFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISM 708 (899)
Q Consensus 630 ~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 708 (899)
....+++++|.+ ++.. + |+...+..++..+.+.|..+.|.++.+.- ..-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHH
Confidence 344566666655 4311 1 11122245555556666666666554211 111344567899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCc
Q 045600 709 ARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMVEHGIS 788 (899)
Q Consensus 709 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 788 (899)
|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++-+.....|
T Consensus 671 A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-- 737 (814)
T 3mkq_A 671 ARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-- 737 (814)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 99998776 4567899999999999999999999998764 4455555556777766665555554433
Q ss_pred cCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 789 QKMEHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 789 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
-+..-..+|.+.|++++|.+++.++
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233444566667777776666655
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.41 E-value=0.0092 Score=58.44 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=69.9
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----hCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CChHH
Q 045600 807 LNEAFIFVKKL-PCKPS---VSILESLLGACRI-----HGNVELGEIISGMLFEMDPEN-PGSYVMLHNIYASA-GRWED 875 (899)
Q Consensus 807 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~e 875 (899)
..+|...+++. ...|+ ...+..++..|.. -|+.++|++.++++++++|+. ..+++..++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44556666655 56666 3456777777766 489999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCCc
Q 045600 876 AYRVRSCMKRSRLKKVPGF 894 (899)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~ 894 (899)
|.+++++..+..++..|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999998887766664
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.30 E-value=0.012 Score=51.64 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 820 KPSVSILESLLGACRIHG---NVELGEIISGMLFEMD-P-ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
.++..+...+.+++.+.+ +.++++.+++.+.+.+ | ++...++.|+-+|++.|++++|+++++.+.+..+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 467777777888887777 5668888888888887 6 4677888888888888888888888888876444
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.10 E-value=0.027 Score=46.59 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 045600 794 YACMVDLLGRTGHLNEAFIFVKKL-----P----CKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLH 864 (899)
Q Consensus 794 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 864 (899)
...++..+.+.|+++.|..+++.+ . ..+...++..+..++.+.|+++.|...+++++++.|+++.+..++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344556666666666666665544 0 1234567788889999999999999999999999999988877765
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.95 E-value=0.025 Score=46.76 Aligned_cols=67 Identities=7% Similarity=-0.090 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 822 SVSILESLLGACRIHGNVELGEIISGMLFEMD-------PENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+......++..+...|+++.|+..++.+++.. +..+.++..|+.+|.+.|++++|+.+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34456678899999999999999999999864 34567899999999999999999999999986544
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.87 E-value=3 Score=46.52 Aligned_cols=113 Identities=13% Similarity=0.004 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhH----HHHHHHHHHccCCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHH
Q 045600 736 DGEAALELFKQMQLSGVRPNEIT----YLGVLSACSHAGLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAF 811 (899)
Q Consensus 736 ~~~~A~~~~~~m~~~g~~p~~~t----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 811 (899)
+.+.|...+....+.+ ..+... ...+...+...+...++...+....... ++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765433 122222 2222223333443445555555543221 22222333344444667777777
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 045600 812 IFVKKLPCKP--SVSILESLLGACRIHGNVELGEIISGMLFE 851 (899)
Q Consensus 812 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 851 (899)
..++.|...+ ...-..-+..++...|+.++|...++.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777774332 222233444555667777777777777764
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.85 Score=41.06 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHH
Q 045600 697 MDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSK 776 (899)
Q Consensus 697 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~ 776 (899)
.+.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|++..+ +..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788999998888776 4677899999999999999999999988764 455555666777777766
Q ss_pred HHHHHHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 045600 777 MVFKSMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGML 849 (899)
Q Consensus 777 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 849 (899)
.+-+.....| -++.-...+.-.|+++++.+++.+.+.-|.. .-.....|-.+.|.++.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6655554333 2444556667788888888888887543322 12233466677777776654
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.44 E-value=0.43 Score=56.42 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=58.5
Q ss_pred HHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHH
Q 045600 495 YSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIH 574 (899)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 574 (899)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 345678888888876653 567888888888888888888888887754 333444444456665555544
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhhhh
Q 045600 575 GYAIKTGCVADVTFLNALITMYCNCGSTNDGR 606 (899)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 606 (899)
+.....|. ++.....|.+.|++++|.
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~ 756 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAK 756 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHH
Confidence 44444331 233334455556655554
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.27 E-value=0.067 Score=42.96 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=49.0
Q ss_pred cCcchHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 789 QKMEHYACMVDLLGRTGH---LNEAFIFVKKL-PCKPS-VSILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 789 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
.++..+..+..++...++ .++|..++++. ...|+ +..+..++..+...|+++.|+..++++++.+|+++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 345666677777754443 67888887776 44444 456667777788888888888888888888887443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.23 E-value=0.15 Score=42.94 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhhCCHHHHH
Q 045600 771 LVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRTGHLNE---AFIFVKKL-PCK-P--SVSILESLLGACRIHGNVELGE 843 (899)
Q Consensus 771 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 843 (899)
....+.+.|.+....|. ++..+-..+++++.+..+..+ ++.+++.. ... | ....+..+.-++.+.|+++.|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455556665554453 667777778888988887666 78888876 322 3 2234566777888999999999
Q ss_pred HHHHHHHhcCCCCchhHHHH
Q 045600 844 IISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 844 ~~~~~~~~~~p~~~~~~~~l 863 (899)
+..+.+++.+|+|..+....
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHH
Confidence 99999999999988777654
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.058 Score=61.28 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
-...|...|+++.|..+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3467788999999999999999999999999999999999999999999888865
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.71 E-value=0.078 Score=44.68 Aligned_cols=69 Identities=12% Similarity=-0.056 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhhCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 820 KPSVSILESLLGACRIHGNVEL---GEIISGMLFEMD-P-ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
.|+..+-..+.+++.+..+... ++.+++.+...+ | .+...++.|+-++++.|++++|+++++.+.+..+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4888888889999988876555 999999999887 5 4678899999999999999999999999987444
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.67 E-value=0.69 Score=39.63 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=43.0
Q ss_pred ccCcchHHHHHHHHhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 045600 788 SQKMEHYACMVDLLGRTGHLN---EAFIFVKKL-PCKP--SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 788 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 861 (899)
.|+..+-..+.+++.++.+.+ +++.+++.. ...| ....+..+.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 455555556666666665443 355555554 2223 2233445556666677777777777777777776665554
Q ss_pred H
Q 045600 862 M 862 (899)
Q Consensus 862 ~ 862 (899)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.15 E-value=0.9 Score=44.56 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=71.6
Q ss_pred cCCHHHHHHHHHhcCCCC--HHHHHHHHHH-HHhC--C------CHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHc
Q 045600 703 CGNISMARKLFGSLIYKD--AFSWSVMING-YGLY--G------DGEAALELFKQMQLSGVRPN---EITYLGVLSACSH 768 (899)
Q Consensus 703 ~g~~~~A~~~~~~~~~~~--~~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~t~~~l~~~~~~ 768 (899)
.++..+-.+.+.++.+.+ ...|..++.+ +... | ....|...+++..+ +.|+ ...|..|...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344445555555555333 3456655543 2332 2 34567777777777 6776 3567777777777
Q ss_pred c-----CCHHHHHHHHHHHHHcCCccCcchHHHHHHHHhhc-CChHHHHHHHHhC
Q 045600 769 A-----GLVEQSKMVFKSMVEHGISQKMEHYACMVDLLGRT-GHLNEAFIFVKKL 817 (899)
Q Consensus 769 ~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 817 (899)
. |+.++|.+.|++.++.+..-+..++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 88888888888888544322356677777777774 7788877777765
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.98 E-value=0.36 Score=40.78 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=43.1
Q ss_pred ccCcchHHHHHHHHhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 045600 788 SQKMEHYACMVDLLGRTGHLN---EAFIFVKKL-PCKP--SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYV 861 (899)
Q Consensus 788 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 861 (899)
.|+..+-..+++++.+..+.+ +++.++++. ...| ....+..+.-++.+.|+++.|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 455555556666666665443 345555544 2223 2334555556666667777777777777777776665554
Q ss_pred H
Q 045600 862 M 862 (899)
Q Consensus 862 ~ 862 (899)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.94 E-value=0.77 Score=39.66 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=35.9
Q ss_pred CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 045600 805 GHLNEAFIFVKKL--PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVM 862 (899)
Q Consensus 805 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 862 (899)
++.++|.++|+.+ ..+.=...|......-.++|+.+.|.+++.+++.+.|.....+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 4555555555554 111115566677777777778888888888887777765544443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.80 E-value=0.28 Score=42.35 Aligned_cols=57 Identities=5% Similarity=-0.158 Sum_probs=47.3
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 045600 834 RIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLKK 890 (899)
Q Consensus 834 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 890 (899)
...+|.+.|..+|+.+++....-+.++...+.--.++|+...|.+++.+....+.++
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 344899999999999998866666677777777779999999999999999877654
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.58 E-value=4.3 Score=36.53 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=55.3
Q ss_pred HHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHH
Q 045600 495 YSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIH 574 (899)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 574 (899)
...+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.--|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44677888888877666 4567788888888888888888888876643 233333344455555444444
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhhhh
Q 045600 575 GYAIKTGCVADVTFLNALITMYCNCGSTNDGR 606 (899)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 606 (899)
+.....|- ++.....+.-.|+++++.
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i 109 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERS 109 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHH
Confidence 33333321 233333344445555544
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.88 E-value=5.2 Score=33.77 Aligned_cols=85 Identities=8% Similarity=0.027 Sum_probs=56.2
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q 045600 702 RCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 702 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~ 781 (899)
.+|++......+-.+-.. .......++.+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~~-se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNTL-NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTCC-CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcch-HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 455555555555544322 23345566777777888887777777533 3566777777777788888888888888888
Q ss_pred HHHcCCc
Q 045600 782 MVEHGIS 788 (899)
Q Consensus 782 m~~~~~~ 788 (899)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8777754
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.10 E-value=2.3 Score=37.63 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=67.3
Q ss_pred cCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHHHHc-CCccCc-------chHHHHHHHHhhcCChHHHHHHHHhC--
Q 045600 750 SGVRPNEI--TYLGVLSACSHAGLVEQSKMVFKSMVEH-GISQKM-------EHYACMVDLLGRTGHLNEAFIFVKKL-- 817 (899)
Q Consensus 750 ~g~~p~~~--t~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 817 (899)
.|+.|... ++..-+..+...|.++.|.-+.+.+... +..|+. .++..+++++...|++..|...+++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 46677443 4555566788888888888888876621 112221 35666788888888888888887764
Q ss_pred --CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 818 --PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 818 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
+.-+....-.+... .... ...-.. .+.+...-+.++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~---~~ss-------~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG---NSAS-------TPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc---ccCC-------Cccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11111110000000 0000 000011 1334567788999999999999999998875
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.72 E-value=2.7 Score=37.14 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=19.1
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKLPCK 820 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 820 (899)
+.-..+..+|.+.|++++|+.+++..+.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 33344677777777777777777776433
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.69 E-value=3.2 Score=35.03 Aligned_cols=70 Identities=10% Similarity=-0.029 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 818 PCKPSVSILESLLGACRIHGN---VELGEIISGMLFEMDPE-NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 818 ~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
+-.|++.+--.+.+++.+..+ ...++.+++.+.+..|. ....++.|+-++++.|++++|+++.+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344666666666677666554 34677777777777663 46677777777888888888887777776533
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.43 E-value=5.8 Score=33.97 Aligned_cols=70 Identities=10% Similarity=-0.032 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 819 CKPSVSILESLLGACRIHGN---VELGEIISGMLFEMDPE-NPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 819 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
..|+..+--.+.+++.+..+ ..+++.+++.+....|. ....++.|+-.+++.|++++|+++.+.+.+..+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 35777777777778777664 45688888888887774 566778888888888888888888888876444
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.41 E-value=43 Score=38.99 Aligned_cols=266 Identities=8% Similarity=0.018 Sum_probs=131.4
Q ss_pred HHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhhhhhHH-HHhhcCC-------CCChhhHHHHHH
Q 045600 559 PNLNKNGNIKQGMVIHGYAIKTG--CVADVTFLNALITMYCNCGSTNDGRLCL-LLFQMGD-------KREISLWNAIIS 628 (899)
Q Consensus 559 ~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~-------~~~~~~~~~li~ 628 (899)
-+....|+.+++..++......+ -.+.......+.-+...+|..+++...+ ..+.... .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 35566778887777766544321 1122344445555556666655554222 2222111 011112223333
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCCCHhHHHH--HHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhH--hc
Q 045600 629 VYVQTNK-AKQAVAFFTELLGAGLEPDNVTVLS--IISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYV--RC 703 (899)
Q Consensus 629 ~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~ 703 (899)
|..-.|. -+++.+.+..+....- +....... +-..+.-.|+.+....++..+.+.. +..+...++.+++ -.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 3333343 2456666666665321 11111121 2223456677777777777766532 2233344444443 56
Q ss_pred CCHHHHHHHHHhcC-CCCHHH-HH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 045600 704 GNISMARKLFGSLI-YKDAFS-WS---VMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMV 778 (899)
Q Consensus 704 g~~~~A~~~~~~~~-~~~~~~-~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~ 778 (899)
|+.+.+..+++.+. ..++.. |. ++.-+|+-.|+.....++++.+.+. ...+......+.-++...|+.+.+..+
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 77777777777665 344332 32 3344567778876666688888763 122222222222255556666666666
Q ss_pred HHHHHHcCCccCcchHHHHHHHHhhcCCh-HHHHHHHHhCCCCCCHHHHHHHH
Q 045600 779 FKSMVEHGISQKMEHYACMVDLLGRTGHL-NEAFIFVKKLPCKPSVSILESLL 830 (899)
Q Consensus 779 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~ 830 (899)
++.+.+.+ .|....-..+.-+....|.. .+|...+..+...++..+-..-+
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHH
Confidence 65554433 34333333333344444443 56777777775566665543333
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.29 E-value=29 Score=36.90 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHHH----HcCCccCc--
Q 045600 723 SWSVMINGYGLYGDGEAALELFKQMQLS--GVRPN---EITYLGVLSACSHAGLVEQSKMVFKSMV----EHGISQKM-- 791 (899)
Q Consensus 723 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~-- 791 (899)
....|...+...|++.+|.+++.++... |..+. ...+...++.|...+++.+|..+++++. .....|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888899999999999988653 22222 1346666778899999999999999875 22222322
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
..|...+..+...+++.+|...|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56677888888999999998877665
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.97 E-value=1.5 Score=46.05 Aligned_cols=67 Identities=16% Similarity=0.013 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCC
Q 045600 826 LESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKR-----SRLKKVP 892 (899)
Q Consensus 826 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~-----~~~~~~~ 892 (899)
...++..+...|+++.++..++.+...+|-+...+..|+.+|.+.|+..+|++.|+...+ -|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 455667788899999999999999999999999999999999999999999999988654 3555544
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=20 Score=38.17 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-----CCCCCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHh---cCCCCc----hh
Q 045600 795 ACMVDLLGRTGHLNEAFIFVKKL-----PCKPSV---SILESLLGACRIHGNVELGEIISGMLFE---MDPENP----GS 859 (899)
Q Consensus 795 ~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~----~~ 859 (899)
..|+..|...|++.+|..++..+ +..+.. ..+..-++.|...+|+..|..+.+++.. ..+.++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677777788888887777665 222221 2344455777778888888877777642 122222 35
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 860 YVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 860 ~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
+...+..+...++|.+|-+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5667777777888888877777664
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.59 E-value=3.2 Score=43.57 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCccCcchHH
Q 045600 724 WSVMINGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMV-----EHGISQKMEHYA 795 (899)
Q Consensus 724 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 795 (899)
...++..+...|++++|+..+..+.. ..| +...|..++.++...|+..+|++.|+.+. +.|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34456677778888888888888776 566 66788888888888888888888887764 458888775444
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.56 E-value=4.1 Score=39.27 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=72.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccCc----chHHHHHHHHhh
Q 045600 729 NGYGLYGDGEAALELFKQMQLSGVRP-NEITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQKM----EHYACMVDLLGR 803 (899)
Q Consensus 729 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~ 803 (899)
....+.|++++|++....-++ -.| |...-..|++.+|-.|++++|.+.++...+. .|+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH--
Confidence 345567888888888777776 456 5556666777888888888888888877743 2332 2344343321
Q ss_pred cCChHHHHH-HHHh--C-CC-CCCHHHHHHHHHHH--HhhCCHHHHHHHHHHHHhcCCCCchhH
Q 045600 804 TGHLNEAFI-FVKK--L-PC-KPSVSILESLLGAC--RIHGNVELGEIISGMLFEMDPENPGSY 860 (899)
Q Consensus 804 ~g~~~~A~~-~~~~--~-~~-~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~ 860 (899)
...+ +|.. . .. .....-...++.+. ...|+.+.|...-+++.+..|..+...
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1111 1111 1 11 11122233444443 456889999999888888888766543
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.02 E-value=30 Score=34.72 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhc
Q 045600 386 VLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVF----RQMQFAGLNPDAVSIISVLSGCS 461 (899)
Q Consensus 386 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 461 (899)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666778899999999987643 345567778877766554 66677889999988888777776
Q ss_pred cCCChH-----HHHHHHHHHHHhC--CCCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 045600 462 KLDDVL-----LGKSAHAFSLRKG--IVSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEE 534 (899)
Q Consensus 462 ~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 534 (899)
....-+ -..+...+..+.| ..-++.....+...|.+.+++.+|+..|-.-..++...+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 1222233333444 234667777788888888888888888743222223455444444433332111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 045600 535 AVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAI 578 (899)
Q Consensus 535 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 578 (899)
+|...-.+++ -|.-.+++..|...++...
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 1222222233 3444567777777665544
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.89 E-value=48 Score=36.88 Aligned_cols=378 Identities=12% Similarity=-0.008 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045600 486 DVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNG 565 (899)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 565 (899)
..-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++-..| ......+..++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3445556667778888887776665 33344444556677788888887877777766554 223445566777777655
Q ss_pred ChHH--HHHHHHHHHHhCC-----------CCCh-hHHHHHHHHHHhcCChhhhhhHHHHhhcCCCCCh---hhHHHHHH
Q 045600 566 NIKQ--GMVIHGYAIKTGC-----------VADV-TFLNALITMYCNCGSTNDGRLCLLLFQMGDKREI---SLWNAIIS 628 (899)
Q Consensus 566 ~~~~--a~~~~~~~~~~~~-----------~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~ 628 (899)
.+.. ...-+..+...|- .++. .....++..+.+... +. ...... .++. ..+...+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~---~~~~~~-~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VL---TFARTT-GATDFTRQMAAVAFA 223 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HH---HHHHHS-CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HH---HHHhcc-CCChhhHHHHHHHHH
Confidence 4432 2333333333221 1111 111111111111111 11 111111 1111 11222233
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHh--HHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 045600 629 VYVQTNKAKQAVAFFTELLGAG-LEPDNV--TVLSIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGN 705 (899)
Q Consensus 629 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 705 (899)
-+.+ .+.+.|...+....+.+ +.+... ....+.......+...++...+........ +.....-.+....+.|+
T Consensus 224 rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 224 SVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGD 300 (618)
T ss_dssp HHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTC
T ss_pred HHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCC
Confidence 3333 37889999998887543 222221 122233344555535555666665443332 22233334444456799
Q ss_pred HHHHHHHHHhcCCC--C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 045600 706 ISMARKLFGSLIYK--D-AFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 706 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m 782 (899)
++.|.+.|+.|... + .....=+..++...|+.++|..+|+++.+ +. +|..++.+ .+.|..-..
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~~------- 366 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYEL------- 366 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCCC-------
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCCC-------
Confidence 99999999998732 2 22222244567788999999999998864 21 33333321 112210000
Q ss_pred HHcCCccC-cc-----hHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--
Q 045600 783 VEHGISQK-ME-----HYACMVDLLGRTGHLNEAFIFVKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDP-- 854 (899)
Q Consensus 783 ~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-- 854 (899)
......+. .. .-..-+..+...|...+|...+.......+......+.......|..+.++....+....+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~ 446 (618)
T 1qsa_A 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLE 446 (618)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHH
T ss_pred CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchh
Confidence 00000010 01 11233556778898888887776652234444445566666778888877766544333220
Q ss_pred -CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 045600 855 -ENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRLK 889 (899)
Q Consensus 855 -~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 889 (899)
.-|..|...+.-+.+.-..+.++-.--...|.+..
T Consensus 447 ~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~ 482 (618)
T 1qsa_A 447 ERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWN 482 (618)
T ss_dssp HHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTC
T ss_pred hhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 11334555666666555555554443333444543
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.75 E-value=30 Score=34.45 Aligned_cols=167 Identities=12% Similarity=0.063 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhcc
Q 045600 387 LTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAV----FRQMQFAGLNPDAVSIISVLSGCSK 462 (899)
Q Consensus 387 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 462 (899)
+.++..=|.+.+++++|.+++.. -...+.++|+...|-++ .+-+.+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35666778888999999888644 34556778887776664 5566677899998888777777655
Q ss_pred CCC-----hHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhc---CCH
Q 045600 463 LDD-----VLLGKSAHAFSLRKGI--VSNLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQN---GAV 532 (899)
Q Consensus 463 ~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 532 (899)
... ..-..+...+..+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 332 1222333333333332 246777888888889999999888877522222344444444433333 333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 045600 533 EEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIK 579 (899)
Q Consensus 533 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 579 (899)
.++-- ..-.+++ .+.-.+++..|..+++...+
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 33211 1111222 33456777788777765543
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.44 E-value=3.7 Score=46.74 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHH
Q 045600 728 INGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 728 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m 782 (899)
.+.|...|+++-|+++.++... +.|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456667888888888888777 67754 57888888888888888888777765
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.08 E-value=77 Score=36.96 Aligned_cols=257 Identities=11% Similarity=0.039 Sum_probs=132.9
Q ss_pred HHHcCCChHHHHHHHhhcCC----CChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 045600 494 FYSDGGQFSYAFTLFHRMST----RSSV--SWNTLISRCVQNGAVEEAVILLQRMQKEGV-------ELDMVTLISFLPN 560 (899)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~ 560 (899)
+....|+.++++.+++.... .+.. .-..+.-+....|..+++.+++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888888888887664 1222 222233445566666678887777554321 0111111222223
Q ss_pred H--hcCCChHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCH
Q 045600 561 L--NKNGNIKQGMVIHGYAIKTGCVADVTFLN--ALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKA 636 (899)
Q Consensus 561 ~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 636 (899)
. ...++ +++.+.+..+....- +...... +|...+.-.|+.+....++.....-...+..-.-.+.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 3 33333 344555555444321 1111122 2223344456666555444443332222333333444455577888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHH---HHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHH
Q 045600 637 KQAVAFFTELLGAGLEPDNVTVL---SIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLF 713 (899)
Q Consensus 637 ~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 713 (899)
+.+..+.+.+... .....-|. ++.-+|+..|+......++..+.... ..++.-...+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888887763 12223333 23346888899888888888887652 223333333333444456666677777
Q ss_pred HhcC-CCCHHHHH--HHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhH
Q 045600 714 GSLI-YKDAFSWS--VMINGYGLYGDG-EAALELFKQMQLSGVRPNEIT 758 (899)
Q Consensus 714 ~~~~-~~~~~~~~--~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t 758 (899)
+.+. ..|+.+-. .+.-+....|+. .+|+.++..+.. .+|..+
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 6554 34444332 333344444443 678888888874 555543
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.77 E-value=44 Score=33.27 Aligned_cols=166 Identities=8% Similarity=0.047 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHH----HHHHHHHCCCCCCHhHHHHHHHH
Q 045600 589 LNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVA----FFTELLGAGLEPDNVTVLSIISA 664 (899)
Q Consensus 589 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----l~~~m~~~g~~p~~~t~~~ll~a 664 (899)
|.++..-|.+.+++++|. ++... -...+.++|+...|-+ +.+...+.+++++......++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAi---dlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAI---ELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHTTCHHHHH---HHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHH---HHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345555666667777665 22211 1223455566555544 45556667888888777777766
Q ss_pred hcccCCH-HHHHHHHHHHHH----hC--CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC---
Q 045600 665 GVLINSL-NLTHSLMAFVIR----KG--LDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLY--- 734 (899)
Q Consensus 665 ~~~~~~~-~~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--- 734 (899)
+.....- ..-.++++.+++ .| ..-++.....+...|.+.|++.+|+..|-.-...|+..+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 5443211 122344444443 22 2247778888889999999999999888633222455555444433333
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 735 GDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 735 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
|...++--.+-+. ++ -|.-.|+...|..+++...
T Consensus 182 ~~~~e~dlf~~Ra--------------VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTVAEFFSRL--------------VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHHHHHHHHH--------------HH-HHHHTTBHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHH--------------HH-HHHHhcCHHHHHHHHHHHH
Confidence 3333322211111 11 3556788888888888765
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.06 E-value=13 Score=45.33 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=84.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCC---C-----------------
Q 045600 660 SIISAGVLINSLNLTHSLMAFVIRKGLDKHVAVSNALMDSYVRCGNISMARKLFGSLIY---K----------------- 719 (899)
Q Consensus 660 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~----------------- 719 (899)
.++..+...+..+.+.++.... +.+....-.+..+|...|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455555566666555433221 22333334455677788888888888887631 0
Q ss_pred ------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--h--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCcc
Q 045600 720 ------DAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE--I--TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQ 789 (899)
Q Consensus 720 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 789 (899)
-..-|..++..+.+.|.++.++++.+...+..-.-+. . .|..+..++...|++++|-..+-.+-.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 0123556666777777777777777766653211111 1 3566677777778888877777666543322
Q ss_pred CcchHHHHHHHHhhcCChHHH
Q 045600 790 KMEHYACMVDLLGRTGHLNEA 810 (899)
Q Consensus 790 ~~~~~~~l~~~~~~~g~~~~A 810 (899)
...+..++..++..|..++-
T Consensus 971 -~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhh
Confidence 35566677777776655543
No 258
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.00 E-value=29 Score=33.84 Aligned_cols=50 Identities=10% Similarity=-0.014 Sum_probs=24.4
Q ss_pred HHhccCCChhhhhHHHHHHHHhCCCCchh---hhhHHHHHHHhcCChHHHHHHhccC
Q 045600 155 KACSSLSDLRIGREIHCVIFRTGYHQNLV---IQTALVDFYAKKGEMLTARLLFDQI 208 (899)
Q Consensus 155 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~y~~~g~~~~A~~~f~~~ 208 (899)
...++.|+++ +...+++.|..++.. ...+.+...++.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 10 IKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 3334455543 334444555443322 2234455555666666666665543
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.40 E-value=12 Score=29.68 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=42.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 814 VKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 814 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
+-.+..-|++.+..+.+++|++-+|+..|+++++-+..+-.+...+|-.+
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 33446789999999999999999999999999999998887766667655
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.12 E-value=23 Score=34.58 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCC----cHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchh--hhhHHH
Q 045600 116 NLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDF----TFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLV--IQTALV 189 (899)
Q Consensus 116 n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~ 189 (899)
++.+...++.|+.+ +++.+.+.|..++.. -.+ .|...+..|+. ++...+++.|..++.. ...+.+
T Consensus 6 ~~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L 76 (285)
T 1wdy_A 6 NHLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRE----DIVELLLRHGADPVLRKKNGATPF 76 (285)
T ss_dssp HHHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred chHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHH
Confidence 34455556677754 444555667655432 223 33334455654 4556667777655432 233445
Q ss_pred HHHHhcCChHHHHHHhccC
Q 045600 190 DFYAKKGEMLTARLLFDQI 208 (899)
Q Consensus 190 ~~y~~~g~~~~A~~~f~~~ 208 (899)
...++.|+.+-+..+++.-
T Consensus 77 ~~A~~~~~~~~v~~Ll~~g 95 (285)
T 1wdy_A 77 LLAAIAGSVKLLKLFLSKG 95 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcC
Confidence 5566677777666666543
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.80 E-value=17 Score=28.64 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=47.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 045600 390 LLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSII 454 (899)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 454 (899)
-+..+.+.|++++|..+.+...-||+.+|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3455678899999999999999999999987755 46788888888887887766 34444443
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.80 E-value=18 Score=28.56 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=45.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 045600 390 LLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRFWDASLAVFRQMQFAGLNPDAVSII 454 (899)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 454 (899)
-+..+.+.|++++|..+.+...-||+..|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3455678899999999999999999999988765 45677777777777776665 34444443
No 263
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=75.64 E-value=31 Score=32.47 Aligned_cols=86 Identities=7% Similarity=0.089 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCC---cHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchhh---h
Q 045600 112 VFLQNLMIRGLSNCGLHADLLHVYIKCRLSGCPSDDF---TFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLVI---Q 185 (899)
Q Consensus 112 ~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~ 185 (899)
....+.+..+ ++.|+.+ +++.+.+.|..++.. -.+ .|...+..|+. ++.+.+++.|..++... .
T Consensus 7 ~~~~~~l~~A-~~~g~~~----~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~ 76 (240)
T 3eu9_A 7 DYSTWDIVKA-TQYGIYE----RCRELVEAGYDVRQPDKENVT-LLHWAAINNRI----DLVKYYISKGAIVDQLGGDLN 76 (240)
T ss_dssp CGGGCCHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCCBTTTT
T ss_pred cccchHHHHH-HHcCChH----HHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCH----HHHHHHHHcCCcchhhcCCcC
Confidence 3334444443 3455543 344445556544332 122 33334445554 44455556665433221 3
Q ss_pred hHHHHHHHhcCChHHHHHHhcc
Q 045600 186 TALVDFYAKKGEMLTARLLFDQ 207 (899)
Q Consensus 186 ~~l~~~y~~~g~~~~A~~~f~~ 207 (899)
.+.+...++.|+.+-...+++.
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 77 STPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHT
T ss_pred CChhHHHHHcCCHHHHHHHHHc
Confidence 3455556667777766666654
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.73 E-value=8.7 Score=30.24 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=59.0
Q ss_pred ChhhhhHHHHHHHHhCCCCCcchhhHHHHhhhcCCChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 045600 263 HFCFGKSLHGFTIKSGYLFDDFLVPALISMYAGDLDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEAFEIFRQMIR 342 (899)
Q Consensus 263 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (899)
..++|.-|-+.+...+. ...+.-.-+..+.+.|++++|..+.+...-||..+|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34556666666555543 33333334456778999999999999999999999988876 466777777777777776
Q ss_pred CCCCCCHhhH
Q 045600 343 AEMQPDLVTF 352 (899)
Q Consensus 343 ~g~~p~~~t~ 352 (899)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.71 E-value=15 Score=28.97 Aligned_cols=78 Identities=14% Similarity=-0.002 Sum_probs=55.9
Q ss_pred ChhhhhHHHHHHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHH
Q 045600 162 DLRIGREIHCVIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILT 241 (899)
Q Consensus 162 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (899)
..++|..|-+..-..|- ...|--.-+..+...|++++|..+.+....||.+.|-+|-.+ +.|-..++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 34555555555444442 333333334557789999999999999999999999887654 78888888888888877
Q ss_pred CC
Q 045600 242 VG 243 (899)
Q Consensus 242 ~g 243 (899)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 66
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.82 E-value=1.5e+02 Score=36.06 Aligned_cols=165 Identities=9% Similarity=-0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChH
Q 045600 489 NALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGAVEEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIK 568 (899)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 568 (899)
..++..+.+.+..+.|.++..-.+ .+....-.+..++...|++++|.+.|++... |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 345555666777777777655443 3444444566778888999999999876532 121111000 0000
Q ss_pred HHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhhhhhHHHHh-hcCCCCC----hhhHHHHHHHHHHcCCHHHHHH
Q 045600 569 QGMVIHGYAIKTG--CVADVTFLNALITMYCNCGSTNDGRLCLLLF-QMGDKRE----ISLWNAIISVYVQTNKAKQAVA 641 (899)
Q Consensus 569 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 641 (899)
. +..+.... ...-..-|..++..+.+.+..+.+..+-... +.....+ ...|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 00111110 0112233455566666666666654322221 2221111 2257777888888888888877
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhcccCCH
Q 045600 642 FFTELLGAGLEPDNVTVLSIISAGVLINSL 671 (899)
Q Consensus 642 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 671 (899)
.+..+.....+ ...+..|+..+|..+..
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCCh
Confidence 77777664332 34555555555554443
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.55 E-value=4.1 Score=39.25 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 045600 799 DLLGRTGHLNEAFIFVKKL-PCKP-SVSILESLLGACRIHGNVELGEIISGMLFEMDPENPG 858 (899)
Q Consensus 799 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 858 (899)
..+.+.|..++|++.++.- +..| |...-..|+..++-.|+.+.|..-++.+.+++|+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3456778888888776654 4444 4444556677788888888888888888888887443
No 268
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.35 E-value=36 Score=35.96 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHhcc
Q 045600 187 ALVDFYAKKGEMLTARLLFDQ 207 (899)
Q Consensus 187 ~l~~~y~~~g~~~~A~~~f~~ 207 (899)
+.+...++.|+.+-+.-+++.
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHhC
Confidence 344445556666655555554
No 269
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.68 E-value=58 Score=30.57 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=36.1
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCCCC---cHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchh--hhhHHHHHHHhc
Q 045600 121 GLSNCGLHADLLHVYIKCRLSGCPSDDF---TFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLV--IQTALVDFYAKK 195 (899)
Q Consensus 121 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~y~~~ 195 (899)
..+..|+.+.+..+++.+...|..++.. -.+.|. ..+..|+. ++...+++.|..++.. ...+.+...++.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH-LAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHH-HHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 3345566655555555555555444322 122222 22233443 3444445555443322 122333444455
Q ss_pred CChHHHHHHhcc
Q 045600 196 GEMLTARLLFDQ 207 (899)
Q Consensus 196 g~~~~A~~~f~~ 207 (899)
|+.+-...+++.
T Consensus 90 ~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 90 RSPTCLRALLDS 101 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 555555555443
No 270
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=65.39 E-value=54 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHhCCCCchhhhhHHHHHHHhcCChHHHHHHhcc
Q 045600 172 VIFRTGYHQNLVIQTALVDFYAKKGEMLTARLLFDQ 207 (899)
Q Consensus 172 ~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~ 207 (899)
.+++.|..++..-..+.+...++.|+.+-+..+++.
T Consensus 49 ~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 49 TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 334444443333334444445555555555555543
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.22 E-value=28 Score=29.29 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 045600 814 VKKLPCKPSVSILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVML 863 (899)
Q Consensus 814 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 863 (899)
+-.+..-|++.++.+.+.+|++-+|+..|+++++-+..+-.+...+|..+
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 33447889999999999999999999999999999998887767767665
No 272
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=63.71 E-value=35 Score=27.11 Aligned_cols=61 Identities=7% Similarity=-0.067 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 045600 533 EEAVILLQRMQKEGVELDMVTLISFLPNLNKNGNIKQGMVIHGYAIKTGCVADVTFLNALIT 594 (899)
Q Consensus 533 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 594 (899)
=+..+-++.+....+.|++....+.+.+|.+.+++..|..+++-++..- .+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3455666666667788899889999999999999999998888776542 222345555554
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.14 E-value=60 Score=29.71 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 839 VELGEIISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 839 ~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
...+..+++.+.... ..-+..|...+..+...|++.+|.++|+.-.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444433 22333444444445555555555555554433
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.80 E-value=67 Score=30.14 Aligned_cols=183 Identities=10% Similarity=-0.012 Sum_probs=86.0
Q ss_pred hccCCChhhhhHHHHHHHHhCCCCchh--hhhHHHHHHHhcCChHHHHHHhccCCCC---CceeHHHHHHHHHcCCCchH
Q 045600 157 CSSLSDLRIGREIHCVIFRTGYHQNLV--IQTALVDFYAKKGEMLTARLLFDQIPLA---DLVSCNTLMAGYSFNGLDQE 231 (899)
Q Consensus 157 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~ 231 (899)
.++.|+.+..+.+.+...+.|..++.. ...+.+...+..|+.+-+..+++.-..+ |..-++.+. ..++.|+.+-
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~ 94 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH-LACEHRSPTC 94 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH-HHHHcCCHHH
Confidence 335567666666666555566544432 2334555566677777766666643322 222233333 3345566555
Q ss_pred HHHHHHHHHHCCCCCCcc--hHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcc---hhhHHHHhhhcCCChhhHHHHH
Q 045600 232 ALETFRRILTVGLKPNVS--TFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDF---LVPALISMYAGDLDLSTARKLF 306 (899)
Q Consensus 232 A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f 306 (899)
...+++.....++.++.. .-.+.+...+..|+. ++.+.+++.|..++.. .....+...+..|+.+-+.-++
T Consensus 95 ~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Confidence 554444432222222221 111233333344443 3445555566554432 2334445555667777777776
Q ss_pred hhcCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 045600 307 DSLLEK---NASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPDL 349 (899)
Q Consensus 307 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 349 (899)
+.-... |..-++.+ ...++.|+.+ +++.+.+.|..|+.
T Consensus 171 ~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 171 QHGANVNAQMYSGSSAL-HSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp HTTCCTTCBCTTSCBHH-HHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred HcCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 653332 22222222 2234445533 44444455655543
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.69 E-value=1.5e+02 Score=30.71 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcCChhhhhhHHHHhhcCCC--------CChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHhH
Q 045600 587 TFLNALITMYCNCGSTNDGRLCLLLFQMGDK--------REISLWNAIISVYVQTN-KAKQAVAFFTELLGAGLEPDNVT 657 (899)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t 657 (899)
.....|...|.+.|+.++.. +++....+ .....-..++..+.... ..+.-.++..+..+..- -+..+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~ 95 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELA---DLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHH---HHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHH
Confidence 35566777888888888776 44443322 12334455555555532 23333444444332110 01112
Q ss_pred H------HHHHHHhcccCCHHHHHHHHHHHHHh--CCCC---ChhHHHHHHHHhHhcCCHHHHHHHHHhc
Q 045600 658 V------LSIISAGVLINSLNLTHSLMAFVIRK--GLDK---HVAVSNALMDSYVRCGNISMARKLFGSL 716 (899)
Q Consensus 658 ~------~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 716 (899)
| ..+...+...|++.+|..++..+.+. .... -..++-.-+..|...+++.++...+.+.
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2 13455566666666666666666554 2111 1223444455566666666666555443
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.41 E-value=1.4e+02 Score=29.99 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHhHHHHHHHH
Q 045600 589 LNALITMYCNCGSTNDGRLCLLLFQMGDKREISLWNAIISVYVQTNKAKQAVAF----FTELLGAGLEPDNVTVLSIISA 664 (899)
Q Consensus 589 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a 664 (899)
|.++..-|.+.+++++|. ++... -...+.+.|+...|-++ ++...+.++++|..+...++..
T Consensus 38 ~RTi~~Ry~~~k~y~eAi---dLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAV---DILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHTTCHHHHH---HHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHH---HHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345555566677777766 22211 12234555665544443 4555667888888877777776
Q ss_pred hcccCCHH-HHHHHHHHHHH----hC--CCCChhHHHHHHHHhHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 045600 665 GVLINSLN-LTHSLMAFVIR----KG--LDKHVAVSNALMDSYVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDG 737 (899)
Q Consensus 665 ~~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 737 (899)
+.....-+ .=..+.+.+++ .| ..-++.....+...|.+.+++.+|+..|---..+.+..+..++..+...+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 65544311 12333333332 23 3346777788889999999999999988432233335555554443333322
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045600 738 EAALELFKQMQLSGVRPNEITYLGVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 738 ~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
.++- ...-..++ -|.-.++...|...++...
T Consensus 184 ~e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 184 HTAP--------------LYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GGHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred ccHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 1111 11111222 3556678888888776655
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.36 E-value=90 Score=32.87 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=48.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhcCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCChhHHH--
Q 045600 692 VSNALMDSYVRCGNISMARKLFGSLIY------KDAFSWSVMINGYGLYGDGEAALELFKQMQLS---GVRPNEITYL-- 760 (899)
Q Consensus 692 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~-- 760 (899)
....+.+.|.+.|++++|.+.+.++.. .-...+-..+..+...+++..+...+++.... +-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566666666666666666666541 12335555666666666776666666665432 2222221110
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 045600 761 GVLSACSHAGLVEQSKMVFKSMV 783 (899)
Q Consensus 761 ~l~~~~~~~g~~~~A~~~~~~m~ 783 (899)
.-...+...+++.+|...|-+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 11112345566666666666554
No 278
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=59.59 E-value=69 Score=30.00 Aligned_cols=201 Identities=10% Similarity=0.058 Sum_probs=91.7
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCCCC---cHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchh--hhhHHHHHHHhcCC
Q 045600 123 SNCGLHADLLHVYIKCRLSGCPSDDF---TFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLV--IQTALVDFYAKKGE 197 (899)
Q Consensus 123 ~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~y~~~g~ 197 (899)
+..|+.+ +++.+.+.|..++.. -.+.+..|+ ..|+. ++...+++.|..++.. ...+.+...+..|+
T Consensus 19 ~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 89 (237)
T 3b7b_A 19 AEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAA-ENNHL----EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH 89 (237)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH-HTTCH----HHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTC
T ss_pred HHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHH-HhCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3445543 444455566554432 233333333 44554 3445555666544332 23445556667788
Q ss_pred hHHHHHHhccCC----CCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHhhccCChhhhhHHH
Q 045600 198 MLTARLLFDQIP----LADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVST--FSSVIPVCTRLGHFCFGKSLH 271 (899)
Q Consensus 198 ~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~ 271 (899)
.+-+..+++.-+ .++..-++.+..+ ++.|+. ++++.+.+.|..++... -.+.+...+..|+. ++.
T Consensus 90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~~ 160 (237)
T 3b7b_A 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWA-TEYKHV----DLVKLLLSKGSDINIRDNEENICLHWAAFSGCV----DIA 160 (237)
T ss_dssp HHHHHHHHTTTCCCTTCCCTTSCCHHHHH-HHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH----HHH
T ss_pred HHHHHHHHhCCCCCcccCCCCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH----HHH
Confidence 887777776542 2233333444333 344543 34445555565554321 11233333344443 344
Q ss_pred HHHHHhCCCCCcch--hhHHHHhhhcCCChhhHHHHHhhcCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 045600 272 GFTIKSGYLFDDFL--VPALISMYAGDLDLSTARKLFDSLLEKNA---SVWNAMISAYTQSKKFFEAFEIFRQMIR 342 (899)
Q Consensus 272 ~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (899)
+.+++.|..++..- ..+.+...++.|+.+-+.-+++.-...+. .-. +-+...+..|+...++++.+.+.+
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~-t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC-CHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCC-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555443321 22233344455565555555544322211 111 122233445555555555555543
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.09 E-value=1.1e+02 Score=28.03 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHHHHhcC--CCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHH
Q 045600 708 MARKLFGSLI--YKDAF---SWSVMINGYGLYGDGEAALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKS 781 (899)
Q Consensus 708 ~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~ 781 (899)
++.+.|.... ..|+. .|-..++.+ ..+...++..+|..|...|+--.. .-|......+...|++.+|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444433 33543 444444443 234466778888888887766544 3566666667777788888887777
Q ss_pred HHHcCCcc
Q 045600 782 MVEHGISQ 789 (899)
Q Consensus 782 m~~~~~~p 789 (899)
-++.+-.|
T Consensus 141 GI~~~A~P 148 (202)
T 3esl_A 141 GAENNCRP 148 (202)
T ss_dssp HHHTTCBS
T ss_pred HHHcCCcc
Confidence 66666555
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=58.28 E-value=44 Score=32.07 Aligned_cols=90 Identities=12% Similarity=-0.057 Sum_probs=47.9
Q ss_pred HHHhcCCChhhHHHHHHHHHhcCCCCCCC-------cHHHHHHHhc--cCCChhhhhHHHHHHHHhC---------CCCc
Q 045600 120 RGLSNCGLHADLLHVYIKCRLSGCPSDDF-------TFPFLIKACS--SLSDLRIGREIHCVIFRTG---------YHQN 181 (899)
Q Consensus 120 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g---------~~~~ 181 (899)
...++.|+.+....+++.+...|..++.. -.+.|..|+. +.|+.+..+.+.+.-...+ +...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 34456677777777777777777665532 2234444432 5566665555544432211 0000
Q ss_pred hhhhhHHHHHHHhcCChHHHHHHhccCC
Q 045600 182 LVIQTALVDFYAKKGEMLTARLLFDQIP 209 (899)
Q Consensus 182 ~~~~~~l~~~y~~~g~~~~A~~~f~~~~ 209 (899)
-....+.+...+..|+.+-+..+++.-.
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 0123344555566788777777776543
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=55.88 E-value=57 Score=32.36 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=44.8
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 813 FVKKLPCKPSVS--ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 813 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
+|...+..|... ++..-+....+.+++..|..+.++++++.|... ..++|.++++.-.+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 345556666554 467778889999999999999999999998521 3455777777765543
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.64 E-value=56 Score=34.53 Aligned_cols=82 Identities=6% Similarity=-0.024 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcC-CCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC--cchHHHHHHHHhhcCChHHHH
Q 045600 736 DGEAALELFKQMQLSG-VRPN-EITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK--MEHYACMVDLLGRTGHLNEAF 811 (899)
Q Consensus 736 ~~~~A~~~~~~m~~~g-~~p~-~~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~ 811 (899)
..++-.+..+...+.. .... ..++..+...|.+.|+++.|.+.+.++.+.-..+. ...+-.++..+...++|..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444444444444422 2222 23566677777777777777777777774332222 255556666777777777777
Q ss_pred HHHHhC
Q 045600 812 IFVKKL 817 (899)
Q Consensus 812 ~~~~~~ 817 (899)
..++++
T Consensus 189 ~~~~ka 194 (429)
T 4b4t_R 189 EKLEAV 194 (429)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766665
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.28 E-value=2.8e+02 Score=30.98 Aligned_cols=82 Identities=9% Similarity=0.054 Sum_probs=43.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCHHHHHHHHHHHHHhCC-CCChhHHHHHHHHhHh--
Q 045600 626 IISVYVQTNKAKQAVAFFTELLGAGLEPDNVTVLSIISAGVLINSLNLTHSLMAFVIRKGL-DKHVAVSNALMDSYVR-- 702 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~-- 702 (899)
....+.-.|+++.|++.+-.. ...+.+.+...+.-+.-.+- . +.+..... .| .--+..||..|++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcc-cccHHHHHHHHHHHh
Confidence 455667789999999987754 34555666655555433332 1 11111100 12 2235667777765
Q ss_pred -cCCHHHHHHHHHhcCCC
Q 045600 703 -CGNISMARKLFGSLIYK 719 (899)
Q Consensus 703 -~g~~~~A~~~~~~~~~~ 719 (899)
..+..+|.+.|--+..+
T Consensus 368 ~~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTTCHHHHHHHHHGGGGS
T ss_pred hcCCHHHHHHHHHHHhcc
Confidence 57788888877666533
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=52.80 E-value=1.1e+02 Score=32.16 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCchh--hhhHHHHHHHhcCChHHHHHHhcc
Q 045600 169 IHCVIFRTGYHQNLV--IQTALVDFYAKKGEMLTARLLFDQ 207 (899)
Q Consensus 169 ~~~~~~~~g~~~~~~--~~~~l~~~y~~~g~~~~A~~~f~~ 207 (899)
+...+++.|..++.. ...+.+...++.|+.+-+..+++.
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 334444555544432 223344455556666666655554
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.21 E-value=99 Score=26.83 Aligned_cols=74 Identities=8% Similarity=0.024 Sum_probs=42.6
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 811 FIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 811 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
...|... ..+.|+..+...+.......+ +..+++.+.... ...+..|...+..+...|++.+|.++|+.-.+.+
T Consensus 55 ~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 55 MKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344333 345566554444443333333 556666666554 3445566666777777788888888877766544
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.45 E-value=95 Score=30.31 Aligned_cols=116 Identities=9% Similarity=-0.017 Sum_probs=53.0
Q ss_pred hHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHhhccCC
Q 045600 186 TALVDFYAKKGEMLTARLLFDQIPLADLVSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVST--FSSVIPVCTRLGH 263 (899)
Q Consensus 186 ~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~ 263 (899)
.+.+...++.|+.+-+..+++.-..++...-.+.+...++.|+.+-+. .+.+.|..++... -.+.+...+..|+
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence 344555566777777777766533222221122333345566654333 3334455544321 1123333344555
Q ss_pred hhhhhHHHHHHHHhCCCCCcc---hhhHHHHhhhcCCChhhHHHHHhhc
Q 045600 264 FCFGKSLHGFTIKSGYLFDDF---LVPALISMYAGDLDLSTARKLFDSL 309 (899)
Q Consensus 264 ~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~ 309 (899)
.+ +.+.+++.|..++.. -+.+.+...+..|+.+-+.-+++.-
T Consensus 108 ~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 108 MQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 43 333444445443322 1133444445556666555555544
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.69 E-value=1.4e+02 Score=30.27 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=45.6
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCChhH
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLIYKD---AFSWSVMINGYGLYGD--GEAALELFKQMQLSGVRPNEIT 758 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 758 (899)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3677888888999999999999998663 3344455555555433 4567788888887776554433
No 288
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=49.20 E-value=2.1e+02 Score=28.43 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCCcch--hhHHHHhhhcCCChhhHHHHHh
Q 045600 269 SLHGFTIKSGYLFDDFL--VPALISMYAGDLDLSTARKLFD 307 (899)
Q Consensus 269 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~ 307 (899)
.+...+++.|..++... ..+-+...+..|..+.+..+++
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 34444455554443321 1222333445555555555544
No 289
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=48.81 E-value=1.2e+02 Score=25.57 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 045600 718 YKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLS 764 (899)
Q Consensus 718 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 764 (899)
-|++.+..+.+.+|.+.+|+..|+.+|+-.+.+ +.+...+|..+++
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 567777777778888888888888877777654 3444445655553
No 290
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=48.64 E-value=1.5e+02 Score=29.57 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=52.0
Q ss_pred hHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHhcCC-C---CCcchHHHHHHHHHHCCChhHHHHHHHHHH
Q 045600 369 ESLTACVIKNGLGNQPSV--LTALLSMYAKLGNIDSAKFLFDQIP-N---RNLLCWNAMMSAYVRNRFWDASLAVFRQMQ 442 (899)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (899)
..+...+++.|..++... ..+.+...+..|..+.+..+++.-. . +|..-++.|.. -++.|+.+ +.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLKK----IAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHHH
Confidence 345555666665554321 1223445567778777777765422 1 22222333332 34556543 445556
Q ss_pred HcCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc
Q 045600 443 FAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSN 484 (899)
Q Consensus 443 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 484 (899)
+.|..+|..+ .+...++.|+.+ +.+.+++.|-.||
T Consensus 294 ~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 294 KRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp TTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 7787777654 233333445443 3445556665555
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.43 E-value=83 Score=29.33 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCCchh--hhhHHHHHHHhcCChHHHHHHhccCC
Q 045600 168 EIHCVIFRTGYHQNLV--IQTALVDFYAKKGEMLTARLLFDQIP 209 (899)
Q Consensus 168 ~~~~~~~~~g~~~~~~--~~~~l~~~y~~~g~~~~A~~~f~~~~ 209 (899)
++...+++.|..++.. ...+.+...++.|+.+-+..+++.-.
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 3344445556544322 23345556666677766666665544
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.96 E-value=1.2e+02 Score=26.69 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=19.7
Q ss_pred HHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045600 844 IISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSCMKR 885 (899)
Q Consensus 844 ~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 885 (899)
.+++.+.... ..-+..|...+..|...|++.+|.++|+.-.+
T Consensus 81 ~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 81 DMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444333 23334444444445555555555555555444
No 293
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.60 E-value=2.4e+02 Score=28.60 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHHCCC--hhHHHHHHHHHHHcCCCCCHHH
Q 045600 388 TALLSMYAKLGNIDSAKFLFDQIPNRNL---LCWNAMMSAYVRNRF--WDASLAVFRQMQFAGLNPDAVS 452 (899)
Q Consensus 388 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 452 (899)
+.++.=|...|+.++|.+.++++..|.- ....++..++-+.++ .+...+++..+...|+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 5678888889999999999999887642 234445555544333 3557788888887776554443
No 294
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.44 E-value=2.6e+02 Score=28.88 Aligned_cols=223 Identities=12% Similarity=0.061 Sum_probs=112.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHhcccCCHHHHHHHHHHHHHh--CCCCChhHHHHH-
Q 045600 625 AIISVYVQTNKAKQAVAFFTELLGAGLEPDN-----VTVLSIISAGVLINSLNLTHSLMAFVIRK--GLDKHVAVSNAL- 696 (899)
Q Consensus 625 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l- 696 (899)
-++..|...|++.+|..++.++.+.=-..|. ..+..-+..+...+++..+...+...... .+.+++.+...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4678889999999999999988874112222 23444556677889999999888877654 232333322211
Q ss_pred ---HHHhH-hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCH
Q 045600 697 ---MDSYV-RCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVRPNEITYLGVLSACSHAGLV 772 (899)
Q Consensus 697 ---i~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~ 772 (899)
.-.+. ..+++.+|...|-+.. ..|-..|.. .+.. ...|..|.. ..... .
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~~-------------~lkYlvL~a-Ll~~~-r 236 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KALT-------------SLKYMLLCK-IMLGQ-S 236 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHHH-------------HHHHHHHHH-HHTTC-G
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHHH-------------HHHHHHHHH-HHcCC-H
Confidence 11222 3455555544443310 111111111 0011 112222222 22222 1
Q ss_pred HHHHHHHH-HHHHcCCccCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHH---HHHHHHHHhhCCHHHHHHHH
Q 045600 773 EQSKMVFK-SMVEHGISQKMEHYACMVDLLGRTGHLNEAFIFVKKL--PCKPSVSIL---ESLLGACRIHGNVELGEIIS 846 (899)
Q Consensus 773 ~~A~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~ 846 (899)
.+...++. .....-..|....+..++.+| +.+++.+..++++.. ....|+... ..+..... +..+
T Consensus 237 ~el~~~l~~~~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L 307 (394)
T 3txn_A 237 DDVNQLVSGKLAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNL 307 (394)
T ss_dssp GGHHHHHHSHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHhccccccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHH
Confidence 12222221 111111234445556666665 556777777777765 244455422 22211111 1222
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045600 847 GMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSR 887 (899)
Q Consensus 847 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 887 (899)
.++. .|-....+..++..+.- ..+++...+-+|...|
T Consensus 308 ~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 308 CRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 2232 36667777778777654 6788999998888766
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.83 E-value=31 Score=33.22 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=13.1
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCC
Q 045600 224 SFNGLDQEALETFRRILTVGLKPN 247 (899)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~g~~p~ 247 (899)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 445666665555555555554444
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.06 E-value=87 Score=28.26 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=24.4
Q ss_pred hhcCCChhhHHHHHhhc-CC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 045600 293 YAGDLDLSTARKLFDSL-LE---KNASVWNAMISAYTQSKKFFEAFEIFRQMIRAEMQPD 348 (899)
Q Consensus 293 ~~~~g~~~~A~~~f~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 348 (899)
.+..|+.+-+..+++.- .. +|..-++.+..+.........-.++++.+.+.|..|+
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 34455666555555543 11 2222333333333222222233455555555555544
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.45 E-value=53 Score=33.55 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=9.5
Q ss_pred hhhcCCChhhHHHHHhh
Q 045600 292 MYAGDLDLSTARKLFDS 308 (899)
Q Consensus 292 ~~~~~g~~~~A~~~f~~ 308 (899)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33455666666666654
No 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.14 E-value=1.8e+02 Score=26.17 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=20.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCC
Q 045600 381 GNQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNR 429 (899)
Q Consensus 381 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 429 (899)
.++..+....+.++.+.+..+....+...+..++...-...+.++.+.|
T Consensus 118 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3444444555555555554333333333333334333334444444443
No 299
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=42.46 E-value=1.4e+02 Score=27.52 Aligned_cols=85 Identities=19% Similarity=0.106 Sum_probs=37.8
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCCCCcHHHHHHHhccCCChhhhhHHHHHHHHhCCCCchh--hhhHHHHHHHhcC
Q 045600 119 IRGLSNCGLHADLLHVYIKCRLSGCPSDDFTFPFLIKACSSLSDLRIGREIHCVIFRTGYHQNLV--IQTALVDFYAKKG 196 (899)
Q Consensus 119 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~y~~~g 196 (899)
+...+..|+.+....++..-...-..+|..-.+.|..|+ ..|+. ++.+.+++.|..++.. ...+.+...++.|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC-SAGHT----EIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH-HcCcH----HHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 444455666665555554321111122332233333333 33343 3444555566544332 2233444455566
Q ss_pred ChHHHHHHhccC
Q 045600 197 EMLTARLLFDQI 208 (899)
Q Consensus 197 ~~~~A~~~f~~~ 208 (899)
+.+-+..+++.-
T Consensus 85 ~~~~v~~Ll~~g 96 (231)
T 3aji_A 85 XDEIVKALLVKG 96 (231)
T ss_dssp CHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 666666555543
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.29 E-value=1.9e+02 Score=25.05 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcc
Q 045600 739 AALELFKQMQLSGVRPNE-ITYLGVLSACSHAGLVEQSKMVFKSMVEHGISQ 789 (899)
Q Consensus 739 ~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 789 (899)
++..+|..|...|+--.. .-|......+...|++.+|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 367788888877766544 356666666777788888888887776665555
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.21 E-value=1.6e+02 Score=34.81 Aligned_cols=47 Identities=9% Similarity=-0.179 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcC-CCCch----hHHHHHHHHHhcC
Q 045600 825 ILESLLGACRIHGNVELGEIISGMLFEMD-PENPG----SYVMLHNIYASAG 871 (899)
Q Consensus 825 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~----~~~~l~~~y~~~g 871 (899)
.|..++..+-+++-++.++++.+.+++.- ++++. .+..+..++++.|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 56777788888888888888888888643 44444 5555666665554
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.60 E-value=67 Score=34.45 Aligned_cols=68 Identities=16% Similarity=0.031 Sum_probs=41.7
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCCCCC----CHH--HH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 045600 792 EHYACMVDLLGRTGHLNEAFIFVKKLPCKP----SVS--IL-ESLLGACRIHGNVELGEIISGMLFEMDPENPGS 859 (899)
Q Consensus 792 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~--~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 859 (899)
..++.+++.|...+.++.|..++.+..++. +.. .| ..++......+++.+|.+.+..+....|.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 566667777777777777777777763321 111 12 233455566777777777777777776665443
No 303
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.93 E-value=1.7e+02 Score=27.04 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCc----------------eeHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcch
Q 045600 187 ALVDFYAKKGEMLTARLLFDQIPLADL----------------VSCNTLMAGYSFNGLDQEALETFRRILTVGLKPNVST 250 (899)
Q Consensus 187 ~l~~~y~~~g~~~~A~~~f~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 250 (899)
+.+...+..|+.+-+..+++.-..++. .-++.|..+ ++.|+. ++++.+.+.|..++...
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA-ACVGSE----EIVRLLIEHGADIRAQD 151 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHH-HHHTCH----HHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCCCC
Confidence 444555566777766666665432222 223333333 334443 33344444555554321
Q ss_pred --HHHHHHHhhccCChhhhhHHHHHHHHhCCC
Q 045600 251 --FSSVIPVCTRLGHFCFGKSLHGFTIKSGYL 280 (899)
Q Consensus 251 --~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 280 (899)
-.+.+...+..|+.+.+.++.+.+++.|..
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 223444555666666666666666666643
No 304
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.29 E-value=4.9e+02 Score=28.97 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHH
Q 045600 389 ALLSMYAKLGNIDSAKFLFDQIPN---RNLLCWNAMMSAYVR 427 (899)
Q Consensus 389 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 427 (899)
++|--+.++|++++|.++.++... .-...+-..+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 356667788999999888877653 112356666666664
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.09 E-value=2.5e+02 Score=25.45 Aligned_cols=48 Identities=10% Similarity=-0.024 Sum_probs=18.1
Q ss_pred cHhHHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 045600 484 NLDVLNALLMFYSDGGQFSYAFTLFHRMSTRSSVSWNTLISRCVQNGA 531 (899)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 531 (899)
+..+-...+.++++.|..+....+.+-+..++...-...+.++.+.+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333344444444433322222222333343333344444444443
No 306
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=35.53 E-value=1.3e+02 Score=29.32 Aligned_cols=20 Identities=5% Similarity=-0.142 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcCChHHHHH
Q 045600 184 IQTALVDFYAKKGEMLTARL 203 (899)
Q Consensus 184 ~~~~l~~~y~~~g~~~~A~~ 203 (899)
...+.+...+..|+.++..+
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDG 33 (285)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhhcCCCCCccc
Confidence 34455555556666555555
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.52 E-value=1e+02 Score=30.64 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=42.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCh
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKD---AFSWSVMINGYGLYGD--GEAALELFKQMQLSGVRPNE 756 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 756 (899)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+.+.|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 567777888899999999999998663 2344445555555433 45567888888876655543
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.24 E-value=1.3e+02 Score=25.15 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=42.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCh
Q 045600 694 NALMDSYVRCGNISMARKLFGSLIYKD---AFSWSVMINGYGLYGD--GEAALELFKQMQLSGVRPNE 756 (899)
Q Consensus 694 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 756 (899)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 567788888899999999999987663 2344445555555432 45677888888777655543
No 309
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.17 E-value=94 Score=33.40 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=34.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 829 LLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 829 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
|+...+-....+.|...|+++..+.|.+...|+.|+.+....|+.-+|+=+|-+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 3333444445566677777777777777777777777777666666665544443
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.11 E-value=1e+02 Score=30.58 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=76.3
Q ss_pred hhHHHHHHHhcCChHHHHHHhccCCCCCce--eHHHHHHHHHcCCC--chHHHHHHHHHHHCCCCCCcc---hHHHHHHH
Q 045600 185 QTALVDFYAKKGEMLTARLLFDQIPLADLV--SCNTLMAGYSFNGL--DQEALETFRRILTVGLKPNVS---TFSSVIPV 257 (899)
Q Consensus 185 ~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~ 257 (899)
..+++.-|...|+.++|...++++..|.-. ....+|......++ -+-+-.++..+.. ++-+... .|..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 356778888889999999999988766421 12233332222222 2334445566643 2222221 24444444
Q ss_pred hhccC-ChhhhhHHHHHHHHh----CCCCCcchhhHHHHhhhcCCC--hhhHHHHHhhcCC-----------CCc-----
Q 045600 258 CTRLG-HFCFGKSLHGFTIKS----GYLFDDFLVPALISMYAGDLD--LSTARKLFDSLLE-----------KNA----- 314 (899)
Q Consensus 258 ~~~~g-~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~--~~~A~~~f~~~~~-----------~~~----- 314 (899)
+-... |...|.+++..++.. ++-|-.++....-..-...|. +..|..++. ++. .+.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~-~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLS-MSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHH-TCC----CCCSSCCCSTTSCHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhc-ccccHhHHhhhcCCCCCCCCHH
Confidence 43322 455566555555443 333333222211110000011 222332221 110 010
Q ss_pred ---ccHHHHHHHHHcCCChhHHHHHHHHHH
Q 045600 315 ---SVWNAMISAYTQSKKFFEAFEIFRQMI 341 (899)
Q Consensus 315 ---~~~~~li~~~~~~g~~~~A~~l~~~m~ 341 (899)
...+.++.-|...|+.++|...++++.
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 125677888888899999999998885
No 311
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.28 E-value=1.9e+02 Score=26.62 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=10.6
Q ss_pred HcCCChhHHHHHHHHHHHCCC
Q 045600 325 TQSKKFFEAFEIFRQMIRAEM 345 (899)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~g~ 345 (899)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 445555555455555555543
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.51 E-value=2.6e+02 Score=24.58 Aligned_cols=51 Identities=8% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCccC
Q 045600 740 ALELFKQMQLSGVRPNEI-TYLGVLSACSHAGLVEQSKMVFKSMVEHGISQK 790 (899)
Q Consensus 740 A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 790 (899)
+..+|..|...|+--... -|......+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 566777787777655433 455555666677777777777777666665553
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.48 E-value=1.2e+02 Score=28.66 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=17.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 045600 626 IISVYVQTNKAKQAVAFFTELLG 648 (899)
Q Consensus 626 li~~~~~~g~~~~A~~l~~~m~~ 648 (899)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677778888888888877664
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.44 E-value=2.7e+02 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCchhh--hhHHHHHHHhcCChHHHHHHhc
Q 045600 168 EIHCVIFRTGYHQNLVI--QTALVDFYAKKGEMLTARLLFD 206 (899)
Q Consensus 168 ~~~~~~~~~g~~~~~~~--~~~l~~~y~~~g~~~~A~~~f~ 206 (899)
++...+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 53 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 53 EIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93 (201)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 34444455555443321 2233444455666666666663
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.44 E-value=2.6e+02 Score=25.59 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.0
Q ss_pred HHhcCChHHHHHHh
Q 045600 192 YAKKGEMLTARLLF 205 (899)
Q Consensus 192 y~~~g~~~~A~~~f 205 (899)
.++.|+++....++
T Consensus 13 A~~~g~~~~v~~ll 26 (231)
T 3aji_A 13 LAYSGKLDELKERI 26 (231)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 33444444444444
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.19 E-value=2e+02 Score=27.10 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=46.2
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCCC-------CcHHHHHHHhcc--CCChhhhhHHHHHHHHhCCCC--------c
Q 045600 119 IRGLSNCGLHADLLHVYIKCRLSGCPSDD-------FTFPFLIKACSS--LSDLRIGREIHCVIFRTGYHQ--------N 181 (899)
Q Consensus 119 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~--------~ 181 (899)
+...+..|+.+....+++.+...|..++. .-.+.|..|+.. .|+.+..+.+.+.-...+... +
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 33445667777666667766666765443 333444444432 255555544443322221000 0
Q ss_pred h-hhhhHHHHHHHhcCChHHHHHHhccCC
Q 045600 182 L-VIQTALVDFYAKKGEMLTARLLFDQIP 209 (899)
Q Consensus 182 ~-~~~~~l~~~y~~~g~~~~A~~~f~~~~ 209 (899)
. ....+.+...+..|+.+-+..+++.-.
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 0 123444555666777777777776543
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.92 E-value=1.1e+02 Score=32.86 Aligned_cols=61 Identities=7% Similarity=-0.021 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CccCc---chHHHHHHHHhhcCChHHHHHHHHhC
Q 045600 757 ITYLGVLSACSHAGLVEQSKMVFKSMVEHG-ISQKM---EHYACMVDLLGRTGHLNEAFIFVKKL 817 (899)
Q Consensus 757 ~t~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 817 (899)
..++.+++.|...+.++.|..+..+..-.. ..++. ..+..++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 468889999999999999999999875110 01111 22234677888899999999888765
No 318
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.01 E-value=2.9e+02 Score=24.40 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=50.1
Q ss_pred hHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CC--------------hh-HHHHH
Q 045600 700 YVRCGNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALELFKQMQLSGVR--PN--------------EI-TYLGV 762 (899)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~--------------~~-t~~~l 762 (899)
+.-.|.+.+++-++.........-|..| +|-+.+++..|+..++.+.+..+. || .. -|+.+
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 3456778888777776654444444433 566778888888888888854444 22 22 24444
Q ss_pred HHHHHccCCHHHHHHHHHHH
Q 045600 763 LSACSHAGLVEQSKMVFKSM 782 (899)
Q Consensus 763 ~~~~~~~g~~~~A~~~~~~m 782 (899)
...|...|+.++|...+..-
T Consensus 121 a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHhhhHhhhh
Confidence 44566667777777666543
No 319
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.77 E-value=1.7e+02 Score=28.93 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=44.6
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045600 813 FVKKLPCKPSVS--ILESLLGACRIHGNVELGEIISGMLFEMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRSRL 888 (899)
Q Consensus 813 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 888 (899)
+|...+..|... ++..-+....+.+++..|..+.++++++.|+ +. ..++|.++++.-.+.+.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PE-------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HH-------------HHHHHHHHHHHHHHSCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHHHhcCCC
Confidence 345556666654 4677778899999999999999999999875 11 24557777777665443
No 320
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.24 E-value=3.2e+02 Score=24.64 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=20.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCC
Q 045600 382 NQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNR 429 (899)
Q Consensus 382 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 429 (899)
++..+....+.++.+.|..+....+...+..++...-...+.++.+.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 444444444555555544333333333333334333334444444444
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.07 E-value=1.2e+02 Score=30.77 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHHhcCChHHHHHHHhc
Q 045600 393 MYAKLGNIDSAKFLFDQ 409 (899)
Q Consensus 393 ~~~~~g~~~~A~~~~~~ 409 (899)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33455565555555544
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.03 E-value=1.1e+02 Score=26.50 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=43.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCh
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLIYKD---AFSWSVMINGYGLYGD--GEAALELFKQMQLSGVRPNE 756 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 756 (899)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+.+++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567888888999999999999987663 2344445555555332 45677888888777655533
No 323
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.01 E-value=1.5e+02 Score=28.07 Aligned_cols=31 Identities=10% Similarity=-0.159 Sum_probs=20.7
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045600 854 PENPGSYVMLHNIYASAGRWEDAYRVRSCMK 884 (899)
Q Consensus 854 p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 884 (899)
...+.........+.+.|+-++|.++|=+..
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 4445666666677777788888877765443
No 324
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.88 E-value=3.3e+02 Score=24.32 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCC
Q 045600 382 NQPSVLTALLSMYAKLGNIDSAKFLFDQIPNRNLLCWNAMMSAYVRNRF 430 (899)
Q Consensus 382 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 430 (899)
+|..+....+..+.+.|..+....+.+.+..++...-...+.++...|.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444444555543333344444444444433344444444443
No 325
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.28 E-value=2.5e+02 Score=25.93 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=69.9
Q ss_pred hccCCChhhhhHHHHHHHHhCCCCchh--hhhHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHcCCCchH
Q 045600 157 CSSLSDLRIGREIHCVIFRTGYHQNLV--IQTALVDFYAKKGEMLTARLLFDQIPL---ADLVSCNTLMAGYSFNGLDQE 231 (899)
Q Consensus 157 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 231 (899)
.+..|+. ++...+++.|..++.. ...+.+...++.|+.+-+..+++.-.. ++...++.+.. .+..|+.+
T Consensus 18 A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~- 91 (237)
T 3b7b_A 18 AAEAGHV----DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL-AAKKGHYE- 91 (237)
T ss_dssp HHHHTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH-HHHTTCHH-
T ss_pred HHHcCcH----HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH-HHHcCCHH-
Confidence 3345554 4555666777655432 234556666778888888888776432 23333334333 34556543
Q ss_pred HHHHHHHHHHCC-CCCCcc--hHHHHHHHhhccCChhhhhHHHHHHHHhCCCCCcc--hhhHHHHhhhcCCChhhHHHHH
Q 045600 232 ALETFRRILTVG-LKPNVS--TFSSVIPVCTRLGHFCFGKSLHGFTIKSGYLFDDF--LVPALISMYAGDLDLSTARKLF 306 (899)
Q Consensus 232 A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f 306 (899)
+++.+.+.| ..++.. .-.+.+...+..|+. ++.+.+++.|..++.. .....+...+..|+.+-+.-++
T Consensus 92 ---~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 164 (237)
T 3b7b_A 92 ---VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV----DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164 (237)
T ss_dssp ---HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred ---HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 444444444 333221 112233334445554 3455556666554432 1223334444556666666665
Q ss_pred hhc
Q 045600 307 DSL 309 (899)
Q Consensus 307 ~~~ 309 (899)
+.-
T Consensus 165 ~~g 167 (237)
T 3b7b_A 165 AAK 167 (237)
T ss_dssp TTT
T ss_pred HcC
Confidence 543
No 326
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.91 E-value=1.5e+02 Score=23.22 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 045600 704 GNISMARKLFGSLIYKDAFSWSVMINGYGLYGDGEAALE 742 (899)
Q Consensus 704 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 742 (899)
.+.++|.++++.++.+.+..|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468889999999888888889999999887777666543
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.08 E-value=1.6e+02 Score=24.94 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=4.8
Q ss_pred CCChhhHHHHHh
Q 045600 296 DLDLSTARKLFD 307 (899)
Q Consensus 296 ~g~~~~A~~~f~ 307 (899)
.|+.+-+.-+++
T Consensus 111 ~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 111 EGHTAVVSFLAA 122 (156)
T ss_dssp HTCHHHHHHHHT
T ss_pred hChHHHHHHHHh
Confidence 344444443333
No 328
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.28 E-value=3.1e+02 Score=22.83 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH
Q 045600 489 NALLMFYSDGGQFSYAFTLFHRMSTRS---SVSWNTLISRCVQNGA--VEEAVILLQRMQKEGVELDM 551 (899)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 551 (899)
+.++.-|...|+.++|...++++..|. ......+..++-+.+. .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456666777788888888888876652 2334444455555432 35566777777766654443
No 329
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.04 E-value=60 Score=22.84 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHhcCC-ChhhHHHHHHHHHhcC-CCCCCC
Q 045600 121 GLSNCG-LHADLLHVYIKCRLSG-CPSDDF 148 (899)
Q Consensus 121 ~~~~~g-~~~~a~~~~~~m~~~g-~~p~~~ 148 (899)
++..+| +++.|+..|..+...| ++|+.+
T Consensus 28 cL~~~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 28 CLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 444444 7889999999887655 666654
No 330
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.67 E-value=89 Score=24.16 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 859 SYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 859 ~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
.+...++.+.+.|+|+||++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4556677777788888887665543
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.51 E-value=3.2e+02 Score=25.41 Aligned_cols=81 Identities=19% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045600 807 LNEAFIFVKKL-PCKPSVSILESLLGACRIHGNVELGEIISGMLFEMD--PENPGSYVMLHNIYASAGRWEDAYRVRSCM 883 (899)
Q Consensus 807 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 883 (899)
.+.+...|... ..+.|+..+...+......++.. .+|+.+.... ...+..|...+..|...|++.+|.++|+.-
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~---~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPV---ELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHH---HHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHccCCHH---HHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HhCCCcc
Q 045600 884 KRSRLKK 890 (899)
Q Consensus 884 ~~~~~~~ 890 (899)
.+.+=+|
T Consensus 177 i~~~A~P 183 (223)
T 4aez_C 177 KRMKAKP 183 (223)
T ss_dssp HHHTCBS
T ss_pred HHcCCcc
No 332
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.21 E-value=1e+02 Score=23.01 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=26.2
Q ss_pred cCCCCC--CCChhhHHHHHHHHhcCCChhhHHHHHHHH
Q 045600 103 SFPIIK--KPCVFLQNLMIRGLSNCGLHADLLHVYIKC 138 (899)
Q Consensus 103 ~f~~~~--~~~~~~~n~li~~~~~~g~~~~a~~~~~~m 138 (899)
++++|| +|++.+|+-...+.-+..-+.+++.+-+.+
T Consensus 25 LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 25 LLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 557777 789999998777776666667776665544
No 333
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.09 E-value=3.9e+02 Score=28.73 Aligned_cols=69 Identities=9% Similarity=-0.116 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHH----HHHHH-hcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045600 818 PCKPSVSILESLLGACRIHGNVELGEII----SGMLF-EMDPENPGSYVMLHNIYASAGRWEDAYRVRSCMKRS 886 (899)
Q Consensus 818 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~-~~~p~~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 886 (899)
...+|......+...+..+|-.++-.++ ++..+ +..|++....+.|-.-|.+.|++-+|-+++..+-..
T Consensus 173 l~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 173 LKYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred HcCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 3456666677777777777775543221 11112 234566667777777888899999999999888765
No 334
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.88 E-value=6.6e+02 Score=25.40 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=41.0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCChhH
Q 045600 693 SNALMDSYVRCGNISMARKLFGSLIYKD----AFSWSVMINGYGLYGD--GEAALELFKQMQLSGVRPNEIT 758 (899)
Q Consensus 693 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 758 (899)
...++.-|...|+.++|.+.++++..|+ .+.+..+..++ ..++ .+.+..++..+...|+-+....
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3677888888999999999999988764 22333333333 3332 2446667777777665443333
No 335
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.70 E-value=2.8e+02 Score=23.91 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH
Q 045600 488 LNALLMFYSDGGQFSYAFTLFHRMSTRS---SVSWNTLISRCVQNGA--VEEAVILLQRMQKEGVELDM 551 (899)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 551 (899)
.+.++.-|...|+.++|...++++..|. ......+..++-+.+. .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3456666777788888888888876652 2334444455554322 34566777777766654433
No 336
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.19 E-value=3.7e+02 Score=26.93 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC
Q 045600 489 NALLMFYSDGGQFSYAFTLFHRMSTRS---SVSWNTLISRCVQNG-AVEEAVILLQRMQKEGVE 548 (899)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~ 548 (899)
..++.-|...|+.++|...++++..|. ......+..++-+.. .-+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 456666777788888888888887653 122222222222211 134455666666655543
No 337
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.19 E-value=1e+02 Score=24.33 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=31.2
Q ss_pred CChhhHHHHHhhcCCCCcccHHHHHHHHHcCCChhHH
Q 045600 297 LDLSTARKLFDSLLEKNASVWNAMISAYTQSKKFFEA 333 (899)
Q Consensus 297 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 333 (899)
...+.|+++++.++.++..+|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 5789999999999999999999999999776765444
Done!