BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045605
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 28.1 bits (61), Expect = 2.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 7 IPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIP 45
IPI TS + +A+ +QG NR VG F +P
Sbjct: 299 IPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMP 337
>pdb|2W8N|A Chain A, The Crytal Structure Of The Oxidized Form Of Human Ssadh
pdb|2W8O|A Chain A, The Crystal Structure Of The Reduced Form Of Human Ssadh
Length = 487
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 133 VGLQEYFYAQVPASMRNLGIALYLTIIGI 161
VGL YFY+Q PA + + L + ++G+
Sbjct: 416 VGLAGYFYSQDPAQIWRVAEQLEVGMVGV 444
>pdb|2W8P|A Chain A, The Crystal Structure Of Human C340a Ssadh
pdb|2W8Q|A Chain A, The Crystal Structure Of Human Ssadh In Complex With Ssa.
pdb|2W8R|A Chain A, The Crystal Structure Of Human Ssadh In Complex With Nad+
Length = 487
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 133 VGLQEYFYAQVPASMRNLGIALYLTIIGI 161
VGL YFY+Q PA + + L + ++G+
Sbjct: 416 VGLAGYFYSQDPAQIWRVAEQLEVGMVGV 444
>pdb|1VGG|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
Length = 161
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 102 IHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQ-EYFYAQVPASMRNLGIAL 154
I+ PL ++V Q ILG DGFT +G++ E A +R LG L
Sbjct: 108 IYAATANPLKVVVAEEGEQRAILGVXDGFTPLGVEDEAEVAWRKDLLRRLGYKL 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,429,411
Number of Sequences: 62578
Number of extensions: 170249
Number of successful extensions: 325
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 5
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)