Query 045605
Match_columns 164
No_of_seqs 119 out of 1098
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 2.6E-40 5.7E-45 288.0 10.4 159 1-164 334-508 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 3.2E-32 7E-37 230.7 11.1 150 1-163 281-443 (498)
3 PRK15462 dipeptide/tripeptide 100.0 3.9E-29 8.5E-34 215.0 10.8 149 1-163 265-427 (493)
4 TIGR00926 2A1704 Peptide:H+ sy 99.9 4.1E-26 8.9E-31 202.0 12.2 94 1-95 238-344 (654)
5 TIGR00924 yjdL_sub1_fam amino 99.9 1.8E-24 4E-29 185.3 11.1 146 4-163 272-430 (475)
6 PRK09584 tppB putative tripept 99.9 7.8E-24 1.7E-28 182.5 10.3 147 3-163 275-431 (500)
7 PRK10207 dipeptide/tripeptide 99.9 3.3E-23 7.2E-28 178.3 11.3 147 4-163 269-428 (489)
8 PF00854 PTR2: POT family; In 99.9 8.8E-24 1.9E-28 175.5 5.6 151 1-161 208-371 (372)
9 PF00854 PTR2: POT family; In 97.4 7.2E-05 1.6E-09 62.2 2.1 45 110-158 328-372 (372)
10 TIGR02332 HpaX 4-hydroxyphenyl 95.7 0.097 2.1E-06 44.0 9.2 51 113-163 95-145 (412)
11 TIGR00902 2A0127 phenyl propri 95.5 0.16 3.4E-06 42.1 9.6 74 66-162 267-341 (382)
12 KOG1330 Sugar transporter/spin 95.0 0.056 1.2E-06 46.9 5.7 100 41-163 62-170 (493)
13 TIGR00901 2A0125 AmpG-related 94.1 0.54 1.2E-05 38.1 9.4 48 113-160 308-355 (356)
14 PRK11663 regulatory protein Uh 93.5 1.3 2.8E-05 37.3 10.9 49 115-163 112-160 (434)
15 cd06174 MFS The Major Facilita 93.0 0.56 1.2E-05 37.0 7.5 71 71-163 244-314 (352)
16 TIGR00880 2_A_01_02 Multidrug 92.7 1.1 2.4E-05 30.2 7.9 49 114-162 51-99 (141)
17 TIGR00893 2A0114 d-galactonate 92.6 1.2 2.5E-05 35.7 8.9 50 113-162 81-130 (399)
18 TIGR00891 2A0112 putative sial 92.4 1.4 3.1E-05 35.7 9.4 51 113-163 99-149 (405)
19 PRK03545 putative arabinose tr 92.3 0.89 1.9E-05 37.5 8.2 71 70-162 75-145 (390)
20 PF05977 MFS_3: Transmembrane 92.3 0.96 2.1E-05 39.8 8.6 48 113-160 306-353 (524)
21 TIGR00900 2A0121 H+ Antiporter 92.1 0.88 1.9E-05 36.3 7.6 49 114-162 301-349 (365)
22 TIGR00805 oat sodium-independe 92.0 0.44 9.5E-06 42.8 6.3 50 114-163 172-221 (633)
23 PRK11646 multidrug resistance 91.8 0.68 1.5E-05 38.7 7.0 46 117-162 300-345 (400)
24 TIGR00879 SP MFS transporter, 91.7 1.1 2.5E-05 36.9 8.2 50 114-163 127-176 (481)
25 PRK12382 putative transporter; 91.6 0.8 1.7E-05 37.7 7.1 49 114-162 302-350 (392)
26 TIGR00890 2A0111 Oxalate/Forma 91.6 1.4 2.9E-05 35.3 8.2 69 72-163 71-139 (377)
27 KOG3764 Vesicular amine transp 91.5 0.91 2E-05 39.1 7.2 71 71-163 138-209 (464)
28 PRK09556 uhpT sugar phosphate 91.2 0.35 7.6E-06 41.2 4.7 79 68-163 93-171 (467)
29 TIGR00889 2A0110 nucleoside tr 91.2 2.8 6E-05 35.4 10.0 46 117-162 311-357 (418)
30 PRK10473 multidrug efflux syst 91.1 2.5 5.3E-05 34.8 9.5 50 113-162 90-139 (392)
31 TIGR00710 efflux_Bcr_CflA drug 91.1 1.2 2.6E-05 36.1 7.5 50 113-162 92-141 (385)
32 PRK10489 enterobactin exporter 90.9 2.1 4.5E-05 35.7 8.9 47 116-162 314-360 (417)
33 PRK10213 nepI ribonucleoside t 90.7 2.3 5E-05 35.4 9.0 71 70-162 86-156 (394)
34 PRK05122 major facilitator sup 90.4 1.9 4.2E-05 35.5 8.2 49 114-162 302-350 (399)
35 TIGR00711 efflux_EmrB drug res 90.3 2.2 4.7E-05 35.9 8.7 51 113-163 89-139 (485)
36 PRK11646 multidrug resistance 90.3 1.8 4E-05 36.1 8.1 50 113-162 98-147 (400)
37 PRK11128 putative 3-phenylprop 90.2 2.9 6.3E-05 34.4 9.2 43 113-156 292-334 (382)
38 PRK12307 putative sialic acid 90.0 2 4.3E-05 35.6 8.1 51 113-163 105-155 (426)
39 TIGR00892 2A0113 monocarboxyla 89.8 1.4 3E-05 37.6 7.1 51 113-163 332-382 (455)
40 PRK15403 multidrug efflux syst 89.7 3.2 6.8E-05 34.9 9.1 50 113-162 103-152 (413)
41 TIGR00894 2A0114euk Na(+)-depe 89.6 1.1 2.4E-05 37.9 6.4 51 113-163 130-180 (465)
42 PF03825 Nuc_H_symport: Nucleo 89.4 1.6 3.5E-05 37.0 7.2 42 121-162 308-350 (400)
43 PRK10077 xylE D-xylose transpo 89.0 2 4.4E-05 36.2 7.5 50 113-162 119-168 (479)
44 TIGR00885 fucP L-fucose:H+ sym 88.8 4.1 8.8E-05 34.3 9.2 51 113-163 93-143 (410)
45 PRK11273 glpT sn-glycerol-3-ph 88.7 2.7 5.9E-05 35.6 8.1 73 72-162 96-168 (452)
46 PRK03633 putative MFS family t 88.7 3 6.5E-05 34.3 8.1 50 113-162 93-142 (381)
47 TIGR00895 2A0115 benzoate tran 88.5 0.88 1.9E-05 36.8 4.8 50 113-162 104-153 (398)
48 TIGR00900 2A0121 H+ Antiporter 88.4 4.2 9E-05 32.3 8.6 51 113-163 91-141 (365)
49 PF07690 MFS_1: Major Facilita 88.3 3.6 7.7E-05 32.6 8.2 49 115-163 86-134 (352)
50 PRK11551 putative 3-hydroxyphe 88.3 2.8 6.1E-05 34.5 7.8 50 113-162 102-151 (406)
51 PF07690 MFS_1: Major Facilita 88.2 1.6 3.4E-05 34.7 6.1 51 113-163 298-348 (352)
52 TIGR00806 rfc RFC reduced fola 88.1 3.8 8.2E-05 36.1 8.5 50 113-163 114-163 (511)
53 PRK10091 MFS transport protein 87.9 3.5 7.6E-05 33.9 8.1 50 113-162 90-139 (382)
54 PRK10054 putative transporter; 87.9 4.3 9.4E-05 33.8 8.7 39 118-156 302-340 (395)
55 cd06174 MFS The Major Facilita 87.9 4.1 8.9E-05 32.0 8.2 51 113-163 86-136 (352)
56 PRK06814 acylglycerophosphoeth 87.7 1.8 3.8E-05 41.2 6.9 50 113-162 333-382 (1140)
57 PRK11102 bicyclomycin/multidru 87.6 3.7 8E-05 33.3 8.0 48 115-162 80-127 (377)
58 TIGR00711 efflux_EmrB drug res 87.6 3.2 7E-05 34.9 7.8 50 113-162 347-396 (485)
59 TIGR00887 2A0109 phosphate:H+ 87.4 7.9 0.00017 33.3 10.3 50 113-162 114-163 (502)
60 TIGR00712 glpT glycerol-3-phos 87.3 3.2 6.9E-05 35.0 7.6 49 114-162 118-166 (438)
61 PRK09528 lacY galactoside perm 87.0 2.8 6E-05 35.0 7.1 41 114-154 315-355 (420)
62 PRK08633 2-acyl-glycerophospho 87.0 4.3 9.2E-05 38.4 9.0 50 113-162 321-370 (1146)
63 TIGR01299 synapt_SV2 synaptic 85.2 5.8 0.00013 36.6 8.6 50 113-162 254-303 (742)
64 PRK14995 methyl viologen resis 85.1 6.8 0.00015 33.7 8.7 50 113-162 93-143 (495)
65 PRK03893 putative sialic acid 85.1 5.3 0.00011 33.9 7.9 51 113-163 107-157 (496)
66 TIGR00881 2A0104 phosphoglycer 84.9 0.88 1.9E-05 36.4 2.9 50 113-162 82-131 (379)
67 TIGR00903 2A0129 major facilit 84.7 6.4 0.00014 32.7 8.1 50 113-163 78-127 (368)
68 TIGR01299 synapt_SV2 synaptic 84.6 5 0.00011 37.0 7.9 48 116-163 650-697 (742)
69 TIGR00898 2A0119 cation transp 84.5 3.8 8.2E-05 35.0 6.8 50 113-162 179-228 (505)
70 PRK10133 L-fucose transporter; 84.2 18 0.00038 30.7 10.7 50 113-162 116-165 (438)
71 TIGR00886 2A0108 nitrite extru 84.1 11 0.00024 30.2 9.1 66 71-158 69-134 (366)
72 PRK05122 major facilitator sup 83.9 4.9 0.00011 33.0 7.0 51 112-162 110-160 (399)
73 PRK03699 putative transporter; 83.4 5 0.00011 33.1 6.9 50 113-162 94-143 (394)
74 PF03209 PUCC: PUCC protein; 83.3 17 0.00037 31.2 10.0 112 30-162 227-349 (403)
75 PRK10642 proline/glycine betai 83.3 4.6 0.0001 34.6 6.9 79 70-162 88-166 (490)
76 TIGR00901 2A0125 AmpG-related 83.1 5.7 0.00012 32.1 7.0 51 113-163 82-132 (356)
77 PRK14995 methyl viologen resis 82.8 6.3 0.00014 33.9 7.5 48 115-162 352-399 (495)
78 TIGR00893 2A0114 d-galactonate 81.9 18 0.00038 28.8 9.4 42 122-163 319-360 (399)
79 KOG3762 Predicted transporter 80.7 3.2 6.9E-05 37.1 4.9 45 113-157 458-502 (618)
80 PRK09705 cynX putative cyanate 80.3 6.5 0.00014 32.6 6.5 68 71-161 76-143 (393)
81 TIGR00897 2A0118 polyol permea 79.1 13 0.00029 30.8 8.0 50 113-162 104-153 (402)
82 PRK10054 putative transporter; 79.1 17 0.00038 30.1 8.7 45 118-162 100-144 (395)
83 PRK09848 glucuronide transport 78.3 10 0.00022 32.0 7.1 50 113-162 318-374 (448)
84 TIGR00895 2A0115 benzoate tran 78.1 19 0.00042 28.8 8.6 48 115-162 339-386 (398)
85 PRK08633 2-acyl-glycerophospho 77.6 9.4 0.0002 36.1 7.4 50 114-163 103-152 (1146)
86 PF03137 OATP: Organic Anion T 77.3 0.49 1.1E-05 41.8 -1.1 96 67-162 66-189 (539)
87 PRK10504 putative transporter; 77.3 9.1 0.0002 32.3 6.6 46 117-162 356-401 (471)
88 TIGR00883 2A0106 metabolite-pr 77.3 6 0.00013 31.7 5.3 49 115-163 97-145 (394)
89 PTZ00207 hypothetical protein; 77.3 14 0.0003 33.3 7.9 77 70-163 92-168 (591)
90 KOG2533 Permease of the major 76.9 17 0.00036 32.0 8.2 50 114-163 134-183 (495)
91 TIGR00926 2A1704 Peptide:H+ sy 75.9 3.6 7.8E-05 37.3 3.9 58 107-164 558-615 (654)
92 PRK10504 putative transporter; 75.5 14 0.0003 31.2 7.3 50 113-162 97-146 (471)
93 PRK09952 shikimate transporter 74.7 12 0.00026 31.6 6.6 47 116-162 127-173 (438)
94 PRK10406 alpha-ketoglutarate t 74.5 5.3 0.00012 33.5 4.4 50 113-162 123-172 (432)
95 TIGR00898 2A0119 cation transp 74.2 17 0.00036 31.0 7.4 49 115-163 411-459 (505)
96 PRK09874 drug efflux system pr 73.4 25 0.00054 28.7 8.1 49 113-162 106-154 (408)
97 PRK11902 ampG muropeptide tran 73.3 17 0.00036 30.1 7.1 51 113-163 93-143 (402)
98 PRK09874 drug efflux system pr 73.0 19 0.00041 29.4 7.3 48 115-162 312-359 (408)
99 PRK15034 nitrate/nitrite trans 72.6 37 0.0008 29.6 9.2 43 113-156 127-169 (462)
100 PRK12382 putative transporter; 72.5 6.4 0.00014 32.3 4.4 51 112-162 110-160 (392)
101 PRK11195 lysophospholipid tran 71.3 33 0.00071 28.4 8.4 50 113-162 292-342 (393)
102 PRK10489 enterobactin exporter 71.3 17 0.00037 30.1 6.8 50 113-162 109-158 (417)
103 PRK15402 multidrug efflux syst 70.9 25 0.00055 28.9 7.6 49 113-162 308-356 (406)
104 PRK11010 ampG muropeptide tran 70.6 24 0.00051 30.5 7.6 50 113-162 106-155 (491)
105 PRK11043 putative transporter; 69.8 27 0.00059 28.6 7.6 45 113-157 93-137 (401)
106 PF03209 PUCC: PUCC protein; 68.6 61 0.0013 27.9 9.4 44 118-161 93-136 (403)
107 PRK11195 lysophospholipid tran 68.5 38 0.00082 28.1 8.2 44 119-162 93-136 (393)
108 PRK11551 putative 3-hydroxyphe 68.4 22 0.00049 29.1 6.8 50 114-163 308-357 (406)
109 PRK03545 putative arabinose tr 68.2 37 0.0008 27.8 8.1 47 114-161 294-340 (390)
110 PRK06814 acylglycerophosphoeth 68.2 18 0.0004 34.4 6.9 51 113-163 107-157 (1140)
111 TIGR00882 2A0105 oligosacchari 67.7 9.6 0.00021 31.4 4.5 42 113-154 306-347 (396)
112 PLN00028 nitrate transmembrane 65.4 29 0.00062 29.7 7.1 41 116-157 126-166 (476)
113 TIGR00881 2A0104 phosphoglycer 64.6 52 0.0011 26.0 8.1 48 116-163 312-359 (379)
114 PF05978 UNC-93: Ion channel r 64.0 41 0.00088 24.8 6.7 48 113-160 88-135 (156)
115 PRK15402 multidrug efflux syst 63.9 45 0.00098 27.4 7.8 45 114-158 101-145 (406)
116 TIGR00896 CynX cyanate transpo 63.3 29 0.00063 27.9 6.5 47 115-162 88-134 (355)
117 TIGR00792 gph sugar (Glycoside 63.1 57 0.0012 26.9 8.3 50 112-161 97-147 (437)
118 TIGR00879 SP MFS transporter, 61.3 39 0.00085 27.7 7.0 50 114-163 383-432 (481)
119 KOG0569 Permease of the major 60.3 80 0.0017 27.8 8.9 49 115-163 117-165 (485)
120 PF01891 CbiM: Cobalt uptake s 56.4 76 0.0016 24.2 7.4 74 67-145 131-204 (205)
121 PRK11652 emrD multidrug resist 55.8 87 0.0019 25.5 8.1 48 114-161 96-143 (394)
122 COG2814 AraJ Arabinose efflux 54.8 86 0.0019 26.9 8.0 51 113-163 100-150 (394)
123 KOG2532 Permease of the major 54.3 44 0.00095 29.1 6.3 52 112-163 126-177 (466)
124 TIGR00899 2A0120 sugar efflux 54.2 1E+02 0.0022 24.6 8.2 47 115-162 289-335 (375)
125 TIGR00710 efflux_Bcr_CflA drug 54.2 98 0.0021 24.7 8.1 41 117-158 303-343 (385)
126 TIGR00890 2A0111 Oxalate/Forma 54.1 44 0.00095 26.5 5.9 42 122-163 303-344 (377)
127 COG2271 UhpC Sugar phosphate p 53.8 13 0.00028 32.2 2.9 75 67-163 92-166 (448)
128 PRK15075 citrate-proton sympor 53.1 39 0.00085 28.3 5.7 42 117-158 120-161 (434)
129 TIGR00792 gph sugar (Glycoside 53.0 63 0.0014 26.7 6.9 48 115-162 312-366 (437)
130 TIGR00903 2A0129 major facilit 51.4 82 0.0018 26.0 7.3 40 124-163 290-329 (368)
131 KOG3626 Organic anion transpor 50.7 24 0.00051 32.7 4.2 97 66-162 159-285 (735)
132 PRK12307 putative sialic acid 49.5 73 0.0016 26.2 6.8 29 134-162 341-369 (426)
133 PRK03633 putative MFS family t 49.4 43 0.00093 27.4 5.3 45 118-162 289-333 (381)
134 TIGR00924 yjdL_sub1_fam amino 48.0 27 0.00059 30.0 4.0 48 116-163 104-154 (475)
135 PRK10077 xylE D-xylose transpo 48.0 88 0.0019 26.2 7.1 30 133-162 383-412 (479)
136 TIGR00894 2A0114euk Na(+)-depe 46.5 1.8E+02 0.0038 24.5 8.9 44 118-162 365-408 (465)
137 TIGR00892 2A0113 monocarboxyla 46.0 70 0.0015 27.1 6.2 41 121-162 115-155 (455)
138 TIGR00899 2A0120 sugar efflux 45.6 93 0.002 24.8 6.7 37 114-150 87-123 (375)
139 PRK15011 sugar efflux transpor 44.9 1.2E+02 0.0025 25.0 7.2 41 121-162 312-352 (393)
140 KOG0254 Predicted transporter 44.6 88 0.0019 27.1 6.7 50 113-162 141-190 (513)
141 KOG1237 H+/oligopeptide sympor 44.1 34 0.00074 30.6 4.1 74 12-87 193-274 (571)
142 TIGR00891 2A0112 putative sial 41.5 51 0.0011 26.5 4.6 39 124-162 338-376 (405)
143 PF03092 BT1: BT1 family; Int 39.1 1.1E+02 0.0024 26.0 6.4 38 124-163 100-137 (433)
144 KOG2325 Predicted transporter/ 38.8 1.4E+02 0.003 26.4 6.9 71 68-155 101-172 (488)
145 TIGR00883 2A0106 metabolite-pr 37.5 80 0.0017 25.1 5.1 46 117-162 315-361 (394)
146 PF06813 Nodulin-like: Nodulin 37.2 1.8E+02 0.0039 23.1 6.9 48 114-162 95-143 (250)
147 PRK10207 dipeptide/tripeptide 34.8 99 0.0022 26.8 5.5 76 67-163 79-156 (489)
148 PF13347 MFS_2: MFS/sugar tran 33.6 1.6E+02 0.0034 24.6 6.4 72 71-162 292-370 (428)
149 PF06123 CreD: Inner membrane 31.5 1.5E+02 0.0032 25.8 5.9 47 74-139 300-346 (430)
150 PRK07331 cobalt transport prot 30.9 3E+02 0.0065 22.9 7.4 32 116-147 188-220 (322)
151 PF01306 LacY_symp: LacY proto 30.4 1.6E+02 0.0036 25.3 6.0 50 112-161 310-360 (412)
152 PF10951 DUF2776: Protein of u 28.2 63 0.0014 26.7 2.9 19 117-135 253-271 (347)
153 PRK09952 shikimate transporter 28.0 3.6E+02 0.0078 22.6 7.8 35 121-155 350-384 (438)
154 PF12729 4HB_MCP_1: Four helix 27.8 1.1E+02 0.0024 21.4 4.0 29 66-94 2-30 (181)
155 TIGR01272 gluP glucose/galacto 27.7 1.5E+02 0.0032 23.8 5.1 51 113-163 9-59 (310)
156 PF02076 STE3: Pheromone A rec 26.9 1E+02 0.0023 25.0 4.0 67 73-139 109-175 (283)
157 PRK11043 putative transporter; 26.2 3.6E+02 0.0077 21.9 7.7 41 117-158 299-339 (401)
158 PRK03893 putative sialic acid 26.0 1.5E+02 0.0032 25.0 5.0 31 132-162 384-414 (496)
159 KOG3574 Acetyl-CoA transporter 25.5 4.4E+02 0.0095 23.2 7.5 45 115-159 370-414 (510)
160 PRK11652 emrD multidrug resist 24.3 3.9E+02 0.0084 21.7 8.0 49 113-162 298-346 (394)
161 PRK11715 inner membrane protei 24.3 2.2E+02 0.0048 24.8 5.7 47 74-139 306-352 (436)
162 PRK09584 tppB putative tripept 22.9 2.7E+02 0.0059 24.1 6.1 46 117-162 115-162 (500)
163 TIGR00788 fbt folate/biopterin 22.7 61 0.0013 27.8 2.0 48 116-163 353-400 (468)
164 TIGR01301 GPH_sucrose GPH fami 21.6 5.5E+02 0.012 22.4 8.9 47 117-163 117-165 (477)
165 COG2149 Predicted membrane pro 20.9 3.2E+02 0.0068 19.4 5.6 26 67-92 52-77 (120)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=287.98 Aligned_cols=159 Identities=44% Similarity=0.696 Sum_probs=147.4
Q ss_pred CeeeeehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCCcccCCccchhhhHHHHH----------------HhCCCC
Q 045605 1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL----------------LTGNER 64 (164)
Q Consensus 1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii----------------~~~~~~ 64 (164)
|+++|++|+|.+.++||+++.|+.|.++.|+.+|||+++++|+||+++++++..+.++ ++++++
T Consensus 334 K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~ 413 (571)
T KOG1237|consen 334 KAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPF 413 (571)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCC
Confidence 7899999999999999999999999999999999999995599999999999998876 344456
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCC
Q 045605 65 GIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVP 144 (164)
Q Consensus 65 ~~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP 144 (164)
+++++||||+|++++.++|.+++.+|.+|++.+.+ ...+.++||++||+|||+++|++|+|.+++++||+|+|||
T Consensus 414 ~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP 488 (571)
T KOG1237|consen 414 GITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAP 488 (571)
T ss_pred CCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCC
Confidence 78999999999999999999999999999998865 1234689999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCC
Q 045605 145 ASMRNLGIALYLTIIGIGSY 164 (164)
Q Consensus 145 ~~mks~~~~~~~l~~~~g~~ 164 (164)
++|||+++++|+++.|+|||
T Consensus 489 ~sMkS~~~al~l~t~a~G~~ 508 (571)
T KOG1237|consen 489 ESMKSVATALWLLTVAVGNY 508 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.97 E-value=3.2e-32 Score=230.68 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=133.7
Q ss_pred CeeeeehhHHhhHHHHHHHhhCcchHHHHHH-hHhcccCCCCcccCCccchhhhHHHHH---------Hh---CCCCCCC
Q 045605 1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQG-ATMNRKVGNNFRIPPASIYSLGAVANL---------LT---GNERGIK 67 (164)
Q Consensus 1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~-~~~d~~i~~~~~ip~~~~~~~~~~~ii---------~~---~~~~~~s 67 (164)
|++++.+|+++..++||++|+|++|++.+|+ ++.||++. |+++|++|+|++||++++ +. +++++|+
T Consensus 281 ~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps 359 (498)
T COG3104 281 RRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPS 359 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCC
Confidence 4678899999999999999999999998887 46688866 699999999999999988 33 3467899
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605 68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM 147 (164)
Q Consensus 68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m 147 (164)
++.|+++|++++++++++....+.+... +.+++|++|+++.|+++++||+|+||+|+|.++++||++|
T Consensus 360 ~~~KFalGl~l~g~~fl~l~~~~~~~~~------------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~ 427 (498)
T COG3104 360 TPIKFALGLILAGLGFLILLLAGIWFGG------------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL 427 (498)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcC------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH
Confidence 9999999999999999998887654311 2467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 045605 148 RNLGIALYLTIIGIGS 163 (164)
Q Consensus 148 ks~~~~~~~l~~~~g~ 163 (164)
+|.+||+|+++.+.|+
T Consensus 428 ~s~~ma~wfLt~a~~~ 443 (498)
T COG3104 428 KSFIMAMWFLTVAAGQ 443 (498)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999886
No 3
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.96 E-value=3.9e-29 Score=215.01 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=129.5
Q ss_pred CeeeeehhHHhhHHHHHHHhhCcchHHHHHH-hHhcccCCCCcccCCccchhhhHHHHH---------Hh---CCCCCCC
Q 045605 1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQG-ATMNRKVGNNFRIPPASIYSLGAVANL---------LT---GNERGIK 67 (164)
Q Consensus 1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~-~~~d~~i~~~~~ip~~~~~~~~~~~ii---------~~---~~~~~~s 67 (164)
|++..++++++..++||+.|+|++++..+.+ +++|++++ ||++|++|+|++||++++ |+ |++++|+
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s 343 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVR 343 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4677889999999999999999999876554 78999998 899999999999999988 33 3466899
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605 68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM 147 (164)
Q Consensus 68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m 147 (164)
.+.|+++|++++++|+++.++..... . +..++|++|++..|+++++||+|.+|+|++++++.||+++
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~~----~---------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~ 410 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARWS----A---------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV 410 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhc----C---------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH
Confidence 99999999999999999887765321 1 1135899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhcC
Q 045605 148 RNLGIALYLTII-GIGS 163 (164)
Q Consensus 148 ks~~~~~~~l~~-~~g~ 163 (164)
+|++||+|+++. ++|+
T Consensus 411 ~g~~mg~w~l~~~~~~~ 427 (493)
T PRK15462 411 TGVLTGIYMLLSGAIAN 427 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999999954 6775
No 4
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.93 E-value=4.1e-26 Score=201.96 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=87.3
Q ss_pred CeeeeehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCCcccCCccchhhhHHHHH-------------HhCCCCCCC
Q 045605 1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL-------------LTGNERGIK 67 (164)
Q Consensus 1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii-------------~~~~~~~~s 67 (164)
|++++++|+++..++||.+++|++|++++|+++||++++ ++++|++++|++|+++++ ++|++++++
T Consensus 238 krll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls 316 (654)
T TIGR00926 238 KRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFT 316 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCC
Confidence 567899999999999999999999999999999999998 799999999999999987 455667799
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045605 68 ILQRIGIGMGFSVLAMTVAAFVESKRLK 95 (164)
Q Consensus 68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~ 95 (164)
+++|+++|++++++++++++++|.++++
T Consensus 317 ~l~k~~iG~~la~la~~va~~ve~~~~~ 344 (654)
T TIGR00926 317 SLRKMAVGGLLAALSFFVAALVQLKVNP 344 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999885
No 5
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.91 E-value=1.8e-24 Score=185.26 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=128.2
Q ss_pred eeehhHHhhHHHHHHHhhCcchHH-HHHHhHhcccCCCCcccCCccchhhhHHHHH------------HhCCCCCCCchh
Q 045605 4 LNTIPIWVTSLTFGISVAQASTSS-VKQGATMNRKVGNNFRIPPASIYSLGAVANL------------LTGNERGIKILQ 70 (164)
Q Consensus 4 ~~~lpi~~~~i~f~~~~~Q~~s~~-~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii------------~~~~~~~~s~l~ 70 (164)
.+++|++++.++||+.|+|..+++ .+|++++|++++ ++++|+++++++|+++++ +++|++++++..
T Consensus 272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~ 350 (475)
T TIGR00924 272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPL 350 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHH
Confidence 457999999999999999999986 456678999998 799999999999999987 344557789999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL 150 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~ 150 (164)
|+++|+++.+++++.++++.. .+. ...++|+||++++|++.|+||++.+|+++++.++++|+++||.
T Consensus 351 k~~~G~~l~~~~~~~~~~~~~----~~~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~ 417 (475)
T TIGR00924 351 KFTLGMLFCGASFLTFAASIW----FAD---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQ 417 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hcC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 999999999999998887731 111 1246899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 045605 151 GIALYLTIIGIGS 163 (164)
Q Consensus 151 ~~~~~~l~~~~g~ 163 (164)
.+|+|.++.++|+
T Consensus 418 ~~g~~~l~~~~g~ 430 (475)
T TIGR00924 418 MLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.90 E-value=7.8e-24 Score=182.46 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=127.9
Q ss_pred eeeehhHHhhHHHHHHHhhCcchHHHHHHh-HhcccCCCCcccCCccchhhhHHHHH---------HhCCCCCCCchhhh
Q 045605 3 VLNTIPIWVTSLTFGISVAQASTSSVKQGA-TMNRKVGNNFRIPPASIYSLGAVANL---------LTGNERGIKILQRI 72 (164)
Q Consensus 3 l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~-~~d~~i~~~~~ip~~~~~~~~~~~ii---------~~~~~~~~s~l~ki 72 (164)
++..+++++..++||+.++|.++....|+. ++|+++. |+.+|++++|++|++.++ ++|.++++++.+|+
T Consensus 275 ~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~ 353 (500)
T PRK09584 275 MIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKF 353 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHH
Confidence 445678889999999999999999998875 5788887 799999999999998876 46666668899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605 73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI 152 (164)
Q Consensus 73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~ 152 (164)
++|+++.+++++..+..... +. +...+|.+|++++|++.|+||++.+|.++++.++++|+++||.+|
T Consensus 354 ~~G~~l~~l~f~~l~~~~~~----~~---------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~ 420 (500)
T PRK09584 354 AIGMVLCSGAFLVLPLGAKF----AN---------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM 420 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence 99999999999987776421 11 124689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 045605 153 ALYLTIIGIGS 163 (164)
Q Consensus 153 ~~~~l~~~~g~ 163 (164)
|+|+++.++|+
T Consensus 421 g~~~l~~a~g~ 431 (500)
T PRK09584 421 GSWFLTTAGAA 431 (500)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 7
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.89 E-value=3.3e-23 Score=178.29 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=125.5
Q ss_pred eeehhHHhhHHHHHHHhhCcchHHHHHHh-HhcccCCCCcccCCccchhhhHHHHH------------HhCCCCCCCchh
Q 045605 4 LNTIPIWVTSLTFGISVAQASTSSVKQGA-TMNRKVGNNFRIPPASIYSLGAVANL------------LTGNERGIKILQ 70 (164)
Q Consensus 4 ~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~-~~d~~i~~~~~ip~~~~~~~~~~~ii------------~~~~~~~~s~l~ 70 (164)
+...++++..++||.+++|.++...+|.+ ++|++.. |+++|++++|++||++++ +.++++++++++
T Consensus 269 ~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~ 347 (489)
T PRK10207 269 FVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPM 347 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHH
Confidence 34566778899999999999998888876 6888777 799999999999999875 455677899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL 150 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~ 150 (164)
|+++|+++++++++.++..+... .. ...++|+||+++.|++.|+||.|.+|+++|++++.+|++++|+
T Consensus 348 k~~~G~~l~~~~~~~~~~~~~~~---~~---------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~ 415 (489)
T PRK10207 348 KFTLGMFLCSLGFLTAAAAGMWF---AD---------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGF 415 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---cC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHH
Confidence 99999999999998877665321 00 1125789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 045605 151 GIALYLTIIGIGS 163 (164)
Q Consensus 151 ~~~~~~l~~~~g~ 163 (164)
++|+|+++.++|+
T Consensus 416 ~~g~~~l~~~ig~ 428 (489)
T PRK10207 416 ILGMWFLTQAAAF 428 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988876
No 8
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.89 E-value=8.8e-24 Score=175.45 Aligned_cols=151 Identities=25% Similarity=0.307 Sum_probs=109.9
Q ss_pred CeeeeehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCC-cccCCccchhhhHHHHH------------HhCCCCCCC
Q 045605 1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNN-FRIPPASIYSLGAVANL------------LTGNERGIK 67 (164)
Q Consensus 1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~-~~ip~~~~~~~~~~~ii------------~~~~~~~~s 67 (164)
|.+.+.+|++.+.++|+..+.|..+....|..++|++++ + +++|++++|++|+++++ +.+++++++
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~ 286 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPS 286 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-----
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccch
Confidence 456788999999999999999999999999999999998 6 99999999999999976 334678899
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605 68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM 147 (164)
Q Consensus 68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m 147 (164)
+++|+++|++++++++++++.+|.+|...+.++| +.+.+|++|.|++.+++|++.+++|+|..|+.+|+++
T Consensus 287 ~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~ 357 (372)
T PF00854_consen 287 PPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRA 357 (372)
T ss_dssp -HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhh
Confidence 9999999999999999999999998886654433 4566999999999999999999999996666666666
Q ss_pred HHHHHHHHHHHHhh
Q 045605 148 RNLGIALYLTIIGI 161 (164)
Q Consensus 148 ks~~~~~~~l~~~~ 161 (164)
++.|+|+|+...++
T Consensus 358 p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 358 PSSMMGIWFALSAF 371 (372)
T ss_dssp SSSSTHHHHHHH--
T ss_pred hHHHHHHHHHHhcc
Confidence 66666666665543
No 9
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.43 E-value=7.2e-05 Score=62.16 Aligned_cols=45 Identities=29% Similarity=0.536 Sum_probs=39.5
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH
Q 045605 110 LSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI 158 (164)
Q Consensus 110 ~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~ 158 (164)
.+++++|++|+|++.++||. ..+|++|+++|++|||+.++++.++
T Consensus 328 ~~~~~~~~~~e~~l~~~g~~----~~~~~a~~~~p~~m~~~~~~~~~~~ 372 (372)
T PF00854_consen 328 VPMYIFWLIPEYFLSGTGES----AAYEFAPSRAPSSMMGIWFALSAFS 372 (372)
T ss_dssp HHHHHHHHHHHHTTTTHHHH----HHHHHTTTT-SSSSTHHHHHHH---
T ss_pred HHHHHHHHHHHHHhhHHHHH----HHHHhhHHhhhHHHHHHHHHHhccC
Confidence 47999999999999999999 9999999999999999999998763
No 10
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=95.67 E-value=0.097 Score=43.97 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|++|....|....+..+..|++.|+..++++....++|.
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 145 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM 145 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999999999999999999999999988876653
No 11
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.45 E-value=0.16 Score=42.09 Aligned_cols=74 Identities=15% Similarity=-0.033 Sum_probs=53.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCc
Q 045605 66 IKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPA 145 (164)
Q Consensus 66 ~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~ 145 (164)
.++.+-+.+|.++.++.....+.. -++++.+.--+++|+...+..+..+.+..++ |+
T Consensus 267 ~g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~ 323 (382)
T TIGR00902 267 CSARDLLLISAIACVGRWAIIGAI----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG 323 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhH----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH
Confidence 344444566777776665544333 1445556656999999999999999999988 99
Q ss_pred hhHHHHHHHHH-HHHhhc
Q 045605 146 SMRNLGIALYL-TIIGIG 162 (164)
Q Consensus 146 ~mks~~~~~~~-l~~~~g 162 (164)
+.++..++++. ++.++|
T Consensus 324 ~~~~~~q~~~~~~~~g~g 341 (382)
T TIGR00902 324 SEIAKLQALYNALAMGGL 341 (382)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 99999999975 344433
No 12
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.056 Score=46.85 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=76.8
Q ss_pred CcccCCccchhhhHHHHH-------HhC-CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcch
Q 045605 41 NFRIPPASIYSLGAVANL-------LTG-NERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSM 112 (164)
Q Consensus 41 ~~~ip~~~~~~~~~~~ii-------~~~-~~~~~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~ 112 (164)
.+++.++....+.+.+++ +.+ ...+.....-|++|.++=+++++..+.++
T Consensus 62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~---------------------- 119 (493)
T KOG1330|consen 62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN---------------------- 119 (493)
T ss_pred hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH----------------------
Confidence 466778877777777766 111 12223445567889888888887766553
Q ss_pred hhhHHHH-HHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAP-QYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip-~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
-+||+. .--+.|+||.-.+|..-.+..+..|+.-||.+.++|+++.-+|+
T Consensus 120 -~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 120 -HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred -HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 277775 67899999999999999999999999999999999999877764
No 13
>TIGR00901 2A0125 AmpG-related permease.
Probab=94.11 E-value=0.54 Score=38.14 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHh
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIG 160 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~ 160 (164)
+.++++...++.++++.+..+....+..+.+|++.|+..+|+.....+
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 445567778899999999999999999999999999999999876554
No 14
>PRK11663 regulatory protein UhpC; Provisional
Probab=93.52 E-value=1.3 Score=37.32 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++..+++.|+++....+.......+..|++-|+..+|++.....+|.
T Consensus 112 ~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 160 (434)
T PRK11663 112 WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGG 160 (434)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4444557788999998889999999999999999999999987776653
No 15
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=93.00 E-value=0.56 Score=37.02 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL 150 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~ 150 (164)
-+.++.++.+++++.....+ +.++.+..+++.++++....+.......+..|++.|+.
T Consensus 244 ~~~~~~~~~~i~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (352)
T cd06174 244 LLLIGLLLAALGLLLLALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHH
Confidence 45566666666665544331 24667788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 045605 151 GIALYLTIIGIGS 163 (164)
Q Consensus 151 ~~~~~~l~~~~g~ 163 (164)
.+|++.....+|+
T Consensus 302 ~~~~~~~~~~~~~ 314 (352)
T cd06174 302 ASGLFNTFGSLGG 314 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
No 16
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=92.68 E-value=1.1 Score=30.19 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.++.....++.+++.....+.......+..|++.|+..++++.....+|
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 99 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALG 99 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHH
Confidence 3455566788999999889999999999999999999999988776655
No 17
>TIGR00893 2A0114 d-galactonate transporter.
Probab=92.58 E-value=1.2 Score=35.72 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....+.......+..|++.|+..++++.....+|
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 130 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLG 130 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHH
Confidence 45666777899999999999999999999999999999999988877665
No 18
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=92.42 E-value=1.4 Score=35.74 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|+++....+....+..+..|++.|+..++++....++|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 149 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA 149 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH
Confidence 345566678999999999999999999999999999999999888776663
No 19
>PRK03545 putative arabinose transporter; Provisional
Probab=92.33 E-value=0.89 Score=37.50 Aligned_cols=71 Identities=8% Similarity=-0.047 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605 70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN 149 (164)
Q Consensus 70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks 149 (164)
+-+.+|.++.+++.+..+..+ +.++++...++.|+++....+.......+..|++-|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~ 132 (390)
T PRK03545 75 KLLIGLFVLFIASHVLSALAW----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA 132 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh
Confidence 445566666666665544431 4566666778999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 045605 150 LGIALYLTIIGIG 162 (164)
Q Consensus 150 ~~~~~~~l~~~~g 162 (164)
..+|++....++|
T Consensus 133 ~~~g~~~~~~~~g 145 (390)
T PRK03545 133 QALSLLATGTALA 145 (390)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988776665
No 20
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=92.28 E-value=0.96 Score=39.84 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHh
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIG 160 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~ 160 (164)
+.+..++..++.|++.....+......-+.+|+++||..++++.....
T Consensus 306 ~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~ 353 (524)
T PF05977_consen 306 SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF 353 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence 445566788899999999999999999999999999999999876543
No 21
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=92.07 E-value=0.88 Score=36.28 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.++.+...++.|++.....+.......+..|++.|+..+|++.....+|
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 349 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAA 349 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4555667889999999999999999999999999999999998876654
No 22
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=92.03 E-value=0.44 Score=42.81 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
...++..-++.|+|+....+.+..+..+..|++.|+...|++.....+|.
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~ 221 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGP 221 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhh
Confidence 44455677999999999999999999999999999999999988877663
No 23
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=91.83 E-value=0.68 Score=38.68 Aligned_cols=46 Identities=11% Similarity=-0.007 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.+...++.++++....|.......+.+|++.|+..+|+.....++|
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 345 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALG 345 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHH
Confidence 3334467788999999999999999999999999999988776655
No 24
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=91.75 E-value=1.1 Score=36.89 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
.++++...++.|+++....+....+..+..|++.|+..++++.....+|.
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 176 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence 35667788999999999999999999999999999999999887776653
No 25
>PRK12382 putative transporter; Provisional
Probab=91.64 E-value=0.8 Score=37.69 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.++.+...++.|+++....+......-+.+|++.|+...|++.....+|
T Consensus 302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 350 (392)
T PRK12382 302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIA 350 (392)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3455567788899998888887777888899999999999998776655
No 26
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=91.57 E-value=1.4 Score=35.30 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHH
Q 045605 72 IGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLG 151 (164)
Q Consensus 72 i~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~ 151 (164)
+.+|.++.+++.+..+... +.+.+....++.|+++....+.......+..|++ |+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 127 (377)
T TIGR00890 71 AMLGGILYGLGFTFYAIAD----------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-RGLA 127 (377)
T ss_pred hHHhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-cHHH
Confidence 4566777777665554442 3344555677999999888888777777777764 8999
Q ss_pred HHHHHHHHhhcC
Q 045605 152 IALYLTIIGIGS 163 (164)
Q Consensus 152 ~~~~~l~~~~g~ 163 (164)
++++....++|.
T Consensus 128 ~~~~~~~~~~g~ 139 (377)
T TIGR00890 128 SGIIIGGYGLGS 139 (377)
T ss_pred HHHHHHhcchhH
Confidence 999988776653
No 27
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=0.91 Score=39.06 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh-HH
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM-RN 149 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m-ks 149 (164)
-|-+|+++..++-++-++.+ |..-++..-.++|+|..+.++.|++...+.-|+.- ||
T Consensus 138 pm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~ 195 (464)
T KOG3764|consen 138 PMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG 195 (464)
T ss_pred HHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence 35667777776665555543 22346777899999999999999999999999887 59
Q ss_pred HHHHHHHHHHhhcC
Q 045605 150 LGIALYLTIIGIGS 163 (164)
Q Consensus 150 ~~~~~~~l~~~~g~ 163 (164)
..||+-+-..++|.
T Consensus 196 ~vmGialgfislG~ 209 (464)
T KOG3764|consen 196 SVMGIALGFISLGV 209 (464)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998888875
No 28
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=91.24 E-value=0.35 Score=41.20 Aligned_cols=79 Identities=10% Similarity=-0.074 Sum_probs=57.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605 68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM 147 (164)
Q Consensus 68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m 147 (164)
+.+-+.+++++.+++....+..-. + ..-+.+.++...++.|++|.+..|.......+..|++.
T Consensus 93 ~r~~l~~~~~~~~~~~~~~~~~~~---------~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 155 (467)
T PRK09556 93 TKQFLPFLLILSAICMLGFGASLG---------S--------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK 155 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh---------c--------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc
Confidence 334456777777766654443210 0 11245666777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 045605 148 RNLGIALYLTIIGIGS 163 (164)
Q Consensus 148 ks~~~~~~~l~~~~g~ 163 (164)
|+..+|++.....+|.
T Consensus 156 rg~a~gi~~~~~~lG~ 171 (467)
T PRK09556 156 RGRFLGFWNISHNLGG 171 (467)
T ss_pred eeeeEEeeecccchhh
Confidence 9999999887766653
No 29
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=91.18 E-value=2.8 Score=35.38 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH-HHHhhc
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL-TIIGIG 162 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~-l~~~~g 162 (164)
++...++.|+++.+..+....+..+.+|++.|+..+|+.. ...++|
T Consensus 311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg 357 (418)
T TIGR00889 311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFG 357 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH
Confidence 4455788999999999999999999999999999999996 445554
No 30
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=91.11 E-value=2.5 Score=34.77 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++..+..+.......+..|++-|+...+++.....+|
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~ 139 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCII 139 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 34556667889999999999999999999999999999999887665443
No 31
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=91.09 E-value=1.2 Score=36.08 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|+++....+....+..+..|++.|+..++++.....+|
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 141 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALA 141 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999999999887776654
No 32
>PRK10489 enterobactin exporter EntS; Provisional
Probab=90.90 E-value=2.1 Score=35.67 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
......++.|++.....+....+..+..|++.|+..+|++.....+|
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 360 (417)
T PRK10489 314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTG 360 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhh
Confidence 34445677888888888888888889999999999999987766554
No 33
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=90.67 E-value=2.3 Score=35.42 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605 70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN 149 (164)
Q Consensus 70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks 149 (164)
+-+.+++++.+++.+..+.. -+.++++...++.|++.....|.......+..|++-|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~ 143 (394)
T PRK10213 86 YVVILFAVLLTLSCLLVSFA----------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVP 143 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHH
Confidence 34456777776665554332 24567777789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 045605 150 LGIALYLTIIGIG 162 (164)
Q Consensus 150 ~~~~~~~l~~~~g 162 (164)
...+++....++|
T Consensus 144 ~a~~~~~~~~~~g 156 (394)
T PRK10213 144 KALSVIFGAVSIA 156 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876655
No 34
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=90.35 E-value=1.9 Score=35.45 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.++.+...++.|++.....+.......+..|++.|+..+|++.....+|
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 350 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLS 350 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3455566788999998888887777778999999999999987765554
No 35
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=90.30 E-value=2.2 Score=35.95 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|++.....+.......+..|++.|+..++++.....+|.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 139 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP 139 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 455667788999999999999999999999999999999999988776653
No 36
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=90.27 E-value=1.8 Score=36.08 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.+|++...++.|+++.+..|.......+.+|++.|+..+|+......+|
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g 147 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG 147 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45677778899999999999998899999999999999999987776655
No 37
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=90.24 E-value=2.9 Score=34.44 Aligned_cols=43 Identities=14% Similarity=-0.010 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL 156 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~ 156 (164)
+.++.+..-++.|+++.+..+.......++.|+++ +..+++..
T Consensus 292 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (382)
T PRK11128 292 ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEV-IRLQALYS 334 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhh-HHHHHHHH
Confidence 44556667788999999999999999988866665 77788765
No 38
>PRK12307 putative sialic acid transporter; Provisional
Probab=90.03 E-value=2 Score=35.63 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|+++....+....+..+..|++.|+..++++....++|.
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 155 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN 155 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH
Confidence 345667778899999999999999999999999999999999888776653
No 39
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=89.82 E-value=1.4 Score=37.56 Aligned_cols=51 Identities=16% Similarity=-0.027 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|++.....+.......+..|++.++..+|++.....+|+
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~ 382 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAV 382 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHH
Confidence 345556667788888888888899999999999999999999988877664
No 40
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=89.75 E-value=3.2 Score=34.87 Aligned_cols=50 Identities=10% Similarity=-0.062 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++..-++.|+++.+..+.......+..|++.++..++++.....+|
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVA 152 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45667777889999998877777766767789988888888777765544
No 41
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=89.60 E-value=1.1 Score=37.88 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|++|....|.......+..|++.|+..+|++.....+|.
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 180 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT 180 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999999999999999999999999988776653
No 42
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=89.45 E-value=1.6 Score=36.96 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH-Hhhc
Q 045605 121 YLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI-IGIG 162 (164)
Q Consensus 121 y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~-~~~g 162 (164)
-+++|+.=.+..+++..+..+.+|+++|+.+||++... .++|
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg 350 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLG 350 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence 45799999999999999999999999999999997653 4544
No 43
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=89.02 E-value=2 Score=36.20 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.+.+++..-++.|++.....+....+..+..|++.|+..++++.....+|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 34556677799999999999999999999999999999999987766554
No 44
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=88.84 E-value=4.1 Score=34.34 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++.+...++.|+|..+..+....+..+.+|++.++..+++.....++|+
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ 143 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGS 143 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 445566677899999999999999999889999989888888776666553
No 45
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=88.74 E-value=2.7 Score=35.57 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHH
Q 045605 72 IGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLG 151 (164)
Q Consensus 72 i~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~ 151 (164)
+.+|.++.+++.+..++... ..-+.++++...++.|+++....+.......+..|++.|+..
T Consensus 96 l~~~~~~~~i~~~~~~~~~~------------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~ 157 (452)
T PRK11273 96 LPAGLILAAAVMLFMGFVPW------------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 157 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhc------------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHH
Confidence 45566666666665554420 012345566677899999998888777788888999999999
Q ss_pred HHHHHHHHhhc
Q 045605 152 IALYLTIIGIG 162 (164)
Q Consensus 152 ~~~~~l~~~~g 162 (164)
++++.....+|
T Consensus 158 ~~~~~~~~~~g 168 (452)
T PRK11273 158 VSVWNCAHNVG 168 (452)
T ss_pred HHHHHHHHHhh
Confidence 99988877665
No 46
>PRK03633 putative MFS family transporter protein; Provisional
Probab=88.68 E-value=3 Score=34.28 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|+++....|.......+..|++-|+..++.+.....+|
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLG 142 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34566677899999999999988888888899999999999987766554
No 47
>TIGR00895 2A0115 benzoate transport.
Probab=88.49 E-value=0.88 Score=36.76 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....+.......+..|++.|+..+++......+|
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 153 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence 34556677889999999999999999999999999999999887776655
No 48
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=88.40 E-value=4.2 Score=32.35 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|+++.+..+....+..+..|++-|+...+++.....+|.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 141 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFY 141 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHH
Confidence 556677788999999999999999999999999999999998888776653
No 49
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=88.33 E-value=3.6 Score=32.62 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
++++...++.|+++....+....+..+..|++-|+..++++.....+|.
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS 134 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhh
Confidence 4677889999999999999999999999999999999999988877763
No 50
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=88.30 E-value=2.8 Score=34.50 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....+.......+..|++.|+..++++.....+|
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 45667777899999999999999999999999999999999988766554
No 51
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=88.24 E-value=1.6 Score=34.67 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+..|.+...++.|++..+..+.......+.+|++.++...|+.....++|.
T Consensus 298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 348 (352)
T PF07690_consen 298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG 348 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 556777788899999999999999999999999999999999998877763
No 52
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=88.06 E-value=3.8 Score=36.13 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
|.+.+...-++.|++|.... +...++++-.|++-|+.+.|++..+..+|.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~ 163 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGV 163 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999 999999999999999999999998887764
No 53
>PRK10091 MFS transport protein AraJ; Provisional
Probab=87.94 E-value=3.5 Score=33.92 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|+++....+.......+..|++.|+..++++.....+|
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 139 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVA 139 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHH
Confidence 45667777899999999988888888888899999998888877655544
No 54
>PRK10054 putative transporter; Provisional
Probab=87.90 E-value=4.3 Score=33.77 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH
Q 045605 118 APQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL 156 (164)
Q Consensus 118 ip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~ 156 (164)
+..-++.+++|....|.......+.+|+++++...+...
T Consensus 302 ~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~ 340 (395)
T PRK10054 302 GMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS 340 (395)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH
Confidence 345689999999999999999999999999998877443
No 55
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=87.87 E-value=4.1 Score=31.99 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++.+...++.|+++.+..+....+..+..|++.|+..+++......+|.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 136 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA 136 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH
Confidence 345667778999999999999999999999999999999999887776653
No 56
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=87.70 E-value=1.8 Score=41.15 Aligned_cols=50 Identities=16% Similarity=0.026 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++.+..+++.|++..+..+.......+.+|++++|..+|++.+...+|
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF 382 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence 55667778899999999999999999999999999999999988776654
No 57
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=87.64 E-value=3.7 Score=33.32 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++...++.|++.....+.......+..|++.|+..++++.....+|
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 127 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIA 127 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999999999999999999999988766655
No 58
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=87.57 E-value=3.2 Score=34.91 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++.+...++.|++..+..+.......+..|++.++..+|++.....+|
T Consensus 347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 396 (485)
T TIGR00711 347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLG 396 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHH
Confidence 44555566788999999888877788888899999999999988776555
No 59
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=87.44 E-value=7.9 Score=33.27 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|+++....+....+..+.+|++.|+..++++.....+|
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g 163 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG 163 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999988776655
No 60
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=87.30 E-value=3.2 Score=34.95 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.+.+....++.|+++....+...+...+..|++.|+..++++.....+|
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g 166 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIG 166 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhH
Confidence 3444556788899999888888889999999999999999988776655
No 61
>PRK09528 lacY galactoside permease; Reviewed
Probab=87.04 E-value=2.8 Score=34.96 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHH
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIAL 154 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~ 154 (164)
+++.+...++.+++.....+...++..+..|++.+++..+.
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 355 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLV 355 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeee
Confidence 45667778888888888888888898999999999876543
No 62
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=87.04 E-value=4.3 Score=38.37 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++..+..+.......+.+|++.|+..+|+..+...+|
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg 370 (1146)
T PRK08633 321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVG 370 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHH
Confidence 44566677888999999999888899999999999999999887665554
No 63
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=85.18 E-value=5.8 Score=36.59 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....|....+..+.+|++.|+..++++....++|
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG 303 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG 303 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 34666777899999999999999999999999999999988876665554
No 64
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=85.14 E-value=6.8 Score=33.71 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhcc-CCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQ-VPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~-aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....|.......+. .|++.|+..+|++.....+|
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 456677778999999999999888877666 47899999999988877665
No 65
>PRK03893 putative sialic acid transporter; Provisional
Probab=85.11 E-value=5.3 Score=33.88 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.++++...++.|++.....+.......+..|++.|+..++++.....+|+
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA 157 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 446677778999999999999999999999999999999999988777664
No 66
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=84.89 E-value=0.88 Score=36.42 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|+++.+..+.......+..|++.|+..++++.....+|
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 131 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVG 131 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhH
Confidence 44556667889999999999999999999999999998888776655544
No 67
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=84.75 E-value=6.4 Score=32.68 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+..+++...++.|++|.. .+.......+..|++.|+.+++++.....+|.
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~ 127 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGI 127 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999986 45555566788999999999999998887764
No 68
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=84.60 E-value=5 Score=37.00 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+++...++.++......+....+..+..|.+.|+..+|+......+|.
T Consensus 650 ~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGa 697 (742)
T TIGR01299 650 AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAA 697 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 344445566777766777777888888999999999999988877764
No 69
>TIGR00898 2A0119 cation transport protein.
Probab=84.47 E-value=3.8 Score=34.96 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....+....+..+..|++.|+...+++....++|
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 228 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG 228 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999999999999999987776665
No 70
>PRK10133 L-fucose transporter; Provisional
Probab=84.22 E-value=18 Score=30.75 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....+....+..+..|++.|...++++....++|
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G 165 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHH
Confidence 45667778899999999999999999888888887765555554444433
No 71
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=84.09 E-value=11 Score=30.24 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL 150 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~ 150 (164)
-+.+|.++.+++.+..+... .+.++++...++.|+++... +.......+..|++-|+.
T Consensus 69 ~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~ 126 (366)
T TIGR00886 69 TTTLSLLLLAIPCLWAGLAV---------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGT 126 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhH
Confidence 35567777766665544431 04455666788889987765 456788889999999999
Q ss_pred HHHHHHHH
Q 045605 151 GIALYLTI 158 (164)
Q Consensus 151 ~~~~~~l~ 158 (164)
.++++...
T Consensus 127 ~~~~~~~~ 134 (366)
T TIGR00886 127 ALGLAAGW 134 (366)
T ss_pred HHHHHHHH
Confidence 99987733
No 72
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=83.87 E-value=4.9 Score=33.04 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.+.++++...++.|+++....+.......+..|++.|+..++++.....+|
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 160 (399)
T PRK05122 110 LSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGA 160 (399)
T ss_pred hHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHH
Confidence 356677788899999999999999999999999999999998876654443
No 73
>PRK03699 putative transporter; Provisional
Probab=83.42 E-value=5 Score=33.15 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|+++....+.......+..|++.|+..++......++|
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 143 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMA 143 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 34556677889999999888888888889999999999888765554443
No 74
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=83.34 E-value=17 Score=31.16 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=74.9
Q ss_pred HHhHhcccCCCCcccCCccchhhhHHHHH-----------HhCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 045605 30 QGATMNRKVGNNFRIPPASIYSLGAVANL-----------LTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVP 98 (164)
Q Consensus 30 q~~~~d~~i~~~~~ip~~~~~~~~~~~ii-----------~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~ 98 (164)
|+--++..=+.-|..|++....+|.+.-. +..++.++....+ +|...+++++..-.+..
T Consensus 227 QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~--~G~~~~~~~f~lii~a~-------- 296 (403)
T PF03209_consen 227 QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAA--LGCLLGALAFALIILAG-------- 296 (403)
T ss_pred hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHHHHHHHHH--------
Confidence 44444443333577899988888887643 2223333333333 56666666654432221
Q ss_pred ccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 99 KEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 99 ~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.. -+.+-+.+.-+++|++--+..++.+...-+.+++...++-+|+|-.+-+++
T Consensus 297 ---~~--------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A 349 (403)
T PF03209_consen 297 ---PL--------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIA 349 (403)
T ss_pred ---hc--------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH
Confidence 00 134556778899999999999999999999999999999999999876654
No 75
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=83.30 E-value=4.6 Score=34.64 Aligned_cols=79 Identities=11% Similarity=-0.040 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605 70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN 149 (164)
Q Consensus 70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks 149 (164)
+-+.+++++.+++.+..++.... . .-....+.+++..-++.|+++....+++..+..+..|++.|+
T Consensus 88 ~~l~~~~~l~~i~~~~~a~~~~~--------~------~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg 153 (490)
T PRK10642 88 KILAITIVIMSISTFCIGLIPSY--------A------TIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG 153 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcccH--------H------HHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc
Confidence 34566777777766665554210 0 000112234677889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 045605 150 LGIALYLTIIGIG 162 (164)
Q Consensus 150 ~~~~~~~l~~~~g 162 (164)
...+++.....+|
T Consensus 154 ~~~~~~~~~~~~G 166 (490)
T PRK10642 154 FMGSWLDFGSIAG 166 (490)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887554433
No 76
>TIGR00901 2A0125 AmpG-related permease.
Probab=83.13 E-value=5.7 Score=32.09 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.+++...+++.+..-.+..+....+..+.+|++-|+...++......+|.
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGM 132 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHH
Confidence 556666778888898999999999999999999999999998777666653
No 77
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=82.81 E-value=6.3 Score=33.89 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
++.....++.|++-.+..+.......+.+|++.++...+++.+...+|
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG 399 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELG 399 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHH
Confidence 444566788899999999888888999999999999999988776555
No 78
>TIGR00893 2A0114 d-galactonate transporter.
Probab=81.91 E-value=18 Score=28.76 Aligned_cols=42 Identities=14% Similarity=-0.006 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 122 LILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 122 ~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
.+.+.......+.......+..|++.|+..+|+......+|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 360 (399)
T TIGR00893 319 VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG 360 (399)
T ss_pred HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh
Confidence 333444444788899999999999999999999988877664
No 79
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=80.73 E-value=3.2 Score=37.08 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHH
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLT 157 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l 157 (164)
++|-.+|.-++.|+--..+..+..+++...+|+++|..++|+.-.
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g 502 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQG 502 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence 557777889999999999999999999999999999999998754
No 80
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=80.31 E-value=6.5 Score=32.59 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL 150 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~ 150 (164)
=+..|+.+.+++.+..+... +.++++..-++.|+++....+...+...+..| +.|+.
T Consensus 76 ~l~~~~~l~~~~~~~~~~a~----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~ 132 (393)
T PRK09705 76 SVAISLLLIAVGALMRELYP----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPL 132 (393)
T ss_pred HHHHHHHHHHHHHHHHHHCc----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchh
Confidence 35667777777776655442 23445667889999999999999998888887 56899
Q ss_pred HHHHHHHHHhh
Q 045605 151 GIALYLTIIGI 161 (164)
Q Consensus 151 ~~~~~~l~~~~ 161 (164)
++|++......
T Consensus 133 ~~g~~~~~~~~ 143 (393)
T PRK09705 133 VMGLWSAALMG 143 (393)
T ss_pred HHHHHHHHHHH
Confidence 99998765443
No 81
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=79.12 E-value=13 Score=30.77 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.+.++..+++.|++.....+.......+..|++.|+..+|++....++|
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 153 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIG 153 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34444556788899888777777777888899999999999988776655
No 82
>PRK10054 putative transporter; Provisional
Probab=79.08 E-value=17 Score=30.12 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 118 APQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 118 ip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+..+.+.+.+.....+.....+.+..|++.|+...|+......+|
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg 144 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIG 144 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 334567777777778888888889999999999988887766554
No 83
>PRK09848 glucuronide transporter; Provisional
Probab=78.28 E-value=10 Score=32.00 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCch-------hHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPAS-------MRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~-------mks~~~~~~~l~~~~g 162 (164)
+.++.+...++.++|+.+..+.......+.+|++ ..+..+|++.+..-+|
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 4455556678899999999999999988888754 5688888888765544
No 84
>TIGR00895 2A0115 benzoate transport.
Probab=78.13 E-value=19 Score=28.82 Aligned_cols=48 Identities=21% Similarity=0.108 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
++.+...++.|++.....+.......+..|++.|+..+|+......+|
T Consensus 339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 386 (398)
T TIGR00895 339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLG 386 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 445566788899999999999999999999999999999887776655
No 85
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=77.57 E-value=9.4 Score=36.08 Aligned_cols=50 Identities=8% Similarity=-0.048 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
.++++...++.|+++.+..++...+..+..|++-|+.++|+.....++|.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~ 152 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAI 152 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHH
Confidence 56677788999999999999999999999999999999999988777653
No 86
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=77.34 E-value=0.49 Score=41.81 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=3.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHH----HHhhcccc---------ccc--------c-------cCCCCCcchhhhHHH
Q 045605 67 KILQRIGIGMGFSVLAMTVAAFVES----KRLKIVPK---------EII--------H-------EGKRGPLSMIVFCLA 118 (164)
Q Consensus 67 s~l~ki~iG~~l~~ls~~~~~~ve~----~r~~~~~~---------~g~--------~-------~~~~~~~~~s~~wli 118 (164)
..++-+++|.++.+++.++.++... ++.+.... .-+ . +.+......-.++++
T Consensus 66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 145 (539)
T PF03137_consen 66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI 145 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence 5677899999999999887765422 22111100 001 0 000112223356666
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 119 PQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 119 p~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
..-+++|+|..-..+.|..+.=+.++++..++-.|+.+....+|
T Consensus 146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------SSS-----------------------------------
T ss_pred HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 77899999999999999999999999999999999988877766
No 87
>PRK10504 putative transporter; Provisional
Probab=77.31 E-value=9.1 Score=32.29 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
....+++.|++..+..+.......+..|++.++..+|++.+...+|
T Consensus 356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 401 (471)
T PRK10504 356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLS 401 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHH
Confidence 3445778889999999888899999999999999999988876554
No 88
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=77.31 E-value=6 Score=31.73 Aligned_cols=49 Identities=20% Similarity=0.113 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
++++...++.|+++....+.......+..|++.|+..++++.....+|.
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 145 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGL 145 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHH
Confidence 4466677899999999999999999999999999999999887776653
No 89
>PTZ00207 hypothetical protein; Provisional
Probab=77.30 E-value=14 Score=33.27 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605 70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN 149 (164)
Q Consensus 70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks 149 (164)
+=+.+|.++.+++.+..++... + ...-+.+.+....++.|+|+.+..++......+..| +-|+
T Consensus 92 ~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG 154 (591)
T PTZ00207 92 PIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence 3456788888888777665421 1 012255556667889999999999998888888887 5789
Q ss_pred HHHHHHHHHHhhcC
Q 045605 150 LGIALYLTIIGIGS 163 (164)
Q Consensus 150 ~~~~~~~l~~~~g~ 163 (164)
.++|++....++|.
T Consensus 155 ~a~Gi~~~~~gLGs 168 (591)
T PTZ00207 155 AVVAIMKTFTGLGS 168 (591)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888874
No 90
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=76.94 E-value=17 Score=32.00 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
.+-++.-.+++|+.|....|.-......=-.++-|+..+|+|+.+.++||
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~ 183 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN 183 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence 34456668999999999999999999999999999999999998888876
No 91
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=75.88 E-value=3.6 Score=37.35 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=54.9
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcCC
Q 045605 107 RGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164 (164)
Q Consensus 107 ~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~~ 164 (164)
..++++|++||+|||+++++||++.+++++||+|+|||++|||+++++|+++.++||+
T Consensus 558 ~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~ 615 (654)
T TIGR00926 558 VSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNL 615 (654)
T ss_pred cCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999973
No 92
>PRK10504 putative transporter; Provisional
Probab=75.54 E-value=14 Score=31.16 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++.....|.......+..|++.|+...|+......+|
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVG 146 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 34555667889999999999999999999999999999988887655544
No 93
>PRK09952 shikimate transporter; Provisional
Probab=74.66 E-value=12 Score=31.64 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.++..-++.|+++....+....+..+..|++-|+..++......++|
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G 173 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG 173 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 45666788999999999999999999999999999888877766655
No 94
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=74.46 E-value=5.3 Score=33.53 Aligned_cols=50 Identities=12% Similarity=-0.021 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
++.+++..-++.|++|....|....+..+.+|++-|+...+++......|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G 172 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGG 172 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHH
Confidence 45667778899999999999999999999999999999888876554433
No 95
>TIGR00898 2A0119 cation transport protein.
Probab=74.16 E-value=17 Score=31.02 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
++.+...++.+++.....+....+..+..|++.|+..+|+......+|+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~ 459 (505)
T TIGR00898 411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS 459 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHH
Confidence 3444455566666666667777888888999999999999888777664
No 96
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=73.36 E-value=25 Score=28.67 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++++...++.|++..+. +.......+..|++.|+...+++.....+|
T Consensus 106 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (408)
T PRK09874 106 NIWQFLILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSG 154 (408)
T ss_pred hHHHHHHHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHH
Confidence 4566667788888887654 666777888999999999998887765554
No 97
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=73.26 E-value=17 Score=30.12 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+++++...+++.+.......|....+..+..|++-|+...++.....++|+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~ 143 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAM 143 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHH
Confidence 556667777888899999999999999999999999998888777666553
No 98
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=73.04 E-value=19 Score=29.39 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
++.....++.|+++....|.......+.+|++.++..++++.....+|
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 359 (408)
T PRK09874 312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIG 359 (408)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHH
Confidence 344455678899999999988888888999999888888776654444
No 99
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=72.62 E-value=37 Score=29.59 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL 156 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~ 156 (164)
|.+.++...++.|++ ....+.++....+-.|++.||.++|++.
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~ 169 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGING 169 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHH
Confidence 566777889999998 5577889999999999999999999984
No 100
>PRK12382 putative transporter; Provisional
Probab=72.51 E-value=6.4 Score=32.28 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.+.++++...++.|+++....+.......+..|++-|+..++.+.....+|
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g 160 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGA 160 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHH
Confidence 356677778899999999999999999999999999999999876655443
No 101
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=71.28 E-value=33 Score=28.45 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh-HHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM-RNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m-ks~~~~~~~l~~~~g 162 (164)
+.++.+...++.|++..+..+.......+.+|++. ++...++..+...+|
T Consensus 292 ~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~ 342 (393)
T PRK11195 292 SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLA 342 (393)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHH
Confidence 34556667778899988888888888888887776 788888777655443
No 102
>PRK10489 enterobactin exporter EntS; Provisional
Probab=71.26 E-value=17 Score=30.10 Aligned_cols=50 Identities=14% Similarity=-0.022 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.+++....++.|++..+..+.......+..|++.|+...+++....++|
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLG 158 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHH
Confidence 44556667788899999988999999999999999999998887665554
No 103
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=70.86 E-value=25 Score=28.94 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.+|.+...++.++++....+........ ++++.++...+++.+...+|
T Consensus 308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~ 356 (406)
T PRK15402 308 AYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLI 356 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHH
Confidence 56777788889999999888777666544 45588999998887765544
No 104
>PRK11010 ampG muropeptide transporter; Validated
Probab=70.58 E-value=24 Score=30.50 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.+|+...+++.++.-....+....+..+..|++-|+...++......+|
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG 155 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLA 155 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence 56778888889999999999999999999999999999999888776665
No 105
>PRK11043 putative transporter; Provisional
Probab=69.84 E-value=27 Score=28.64 Aligned_cols=45 Identities=18% Similarity=0.030 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHH
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLT 157 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l 157 (164)
+.++++...++.|++.....+.......+..|++.++...+....
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMP 137 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566667888888877778777888888998877766665543
No 106
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=68.61 E-value=61 Score=27.85 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhh
Q 045605 118 APQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGI 161 (164)
Q Consensus 118 ip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~ 161 (164)
...|++.|+|=-......+.+..|.+||+-|+...++-+...=+
T Consensus 93 ~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~ 136 (403)
T PF03209_consen 93 ALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIV 136 (403)
T ss_pred HHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHH
Confidence 36799999999999999999999999999999999987776433
No 107
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=68.46 E-value=38 Score=28.08 Aligned_cols=44 Identities=9% Similarity=-0.065 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 119 PQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 119 p~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
..+++.|+++.+..|.......+..|++-|+...|+......+|
T Consensus 93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~ 136 (393)
T PRK11195 93 LAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAA 136 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999987766554
No 108
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=68.42 E-value=22 Score=29.09 Aligned_cols=50 Identities=14% Similarity=-0.024 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
.++.....++.|++.....+....+..+..|++.|+..+|+......+|.
T Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS 357 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence 34444556677777777777788888899999999999999887766653
No 109
>PRK03545 putative arabinose transporter; Provisional
Probab=68.22 E-value=37 Score=27.80 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhh
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGI 161 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~ 161 (164)
.++.+...++.|+++....+.-.....+.+|+ .|+..+|++.....+
T Consensus 294 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~ 340 (390)
T PRK03545 294 EWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNI 340 (390)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 44556677888999888777777777788886 678877776654433
No 110
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=68.19 E-value=18 Score=34.38 Aligned_cols=51 Identities=12% Similarity=-0.145 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
|.++++..-+++|+++.+..|+......+..|++-++.++|+.....++|.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~ 157 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAI 157 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999999988877763
No 111
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=67.74 E-value=9.6 Score=31.39 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHH
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIAL 154 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~ 154 (164)
+++|++...++.+++.........++.-++.|++.+++..+.
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~ 347 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLI 347 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehH
Confidence 456677778888888877777788888888899988775544
No 112
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=65.41 E-value=29 Score=29.75 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHH
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLT 157 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l 157 (164)
.++...++.|+++....+ ......+..|++.|+..+|++..
T Consensus 126 ~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~ 166 (476)
T PLN00028 126 GFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAG 166 (476)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHH
Confidence 344557888999876443 45567788999999999999864
No 113
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=64.65 E-value=52 Score=26.02 Aligned_cols=48 Identities=8% Similarity=-0.162 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.+...++.|..-....+.......+..|++.|+...|++.....+|.
T Consensus 312 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 359 (379)
T TIGR00881 312 MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG 359 (379)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhh
Confidence 333333444433222233334566788999999999999988776664
No 114
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=63.99 E-value=41 Score=24.77 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHh
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIG 160 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~ 160 (164)
+.+.++|.-++.|+++.+..++.-.+..+.+.++-|+.-.++++....
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~ 135 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQ 135 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHH
Confidence 346778999999999999999999999999999999999998876543
No 115
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=63.94 E-value=45 Score=27.41 Aligned_cols=45 Identities=11% Similarity=-0.086 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI 158 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~ 158 (164)
.++++...++.|++..+..+.......+..|++.|...+++....
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 145 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV 145 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 345566688889999888888888888889998887766665443
No 116
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=63.29 E-value=29 Score=27.91 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
++++...++.|++..+..+.......+..|+ .|+..++++.....+|
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 134 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGG 134 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHH
Confidence 4445556788898888777777777777765 6888888887655444
No 117
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=63.07 E-value=57 Score=26.92 Aligned_cols=50 Identities=12% Similarity=-0.050 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccC-CchhHHHHHHHHHHHHhh
Q 045605 112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQV-PASMRNLGIALYLTIIGI 161 (164)
Q Consensus 112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~a-P~~mks~~~~~~~l~~~~ 161 (164)
...+|.+..+++.+++..+..+.-.....+.+ |++-|+...+.......+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~ 147 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATL 147 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHH
Confidence 34678888889999999888877777777766 467788877765544433
No 118
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=61.32 E-value=39 Score=27.68 Aligned_cols=50 Identities=12% Similarity=-0.083 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
..+.+...++.+.......+.......+..|++.|+..+|+......+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~ 432 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHH
Confidence 33444444444444544556666677888999999999999988776654
No 119
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=60.35 E-value=80 Score=27.81 Aligned_cols=49 Identities=22% Similarity=0.158 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
--++..-++.|+..-+.....--+...-||++.||.+..+.-+...+|.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999999999999999888877763
No 120
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=56.45 E-value=76 Score=24.20 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=44.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCc
Q 045605 67 KILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPA 145 (164)
Q Consensus 67 s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~ 145 (164)
.+..++..+++-..++...++..-.-........+ +.+.........+.++++++.|.+++-....+..+.-||
T Consensus 131 ~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 131 FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-----DYPWMALVQAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555566666556666554433222111111100 012334555567889999999999999999999988886
No 121
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=55.80 E-value=87 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.003 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhh
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGI 161 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~ 161 (164)
.++++...++.|++.....+...++..+..|++-++...+.+.....+
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILV 143 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 345566678888888888888888888888888888887777665543
No 122
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=54.85 E-value=86 Score=26.85 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
|.+.++..-++.|++.-...+.+...+.+.+|++-|+.++|+-+...++++
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 567778888999999999999999999999999999999999888776653
No 123
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=54.27 E-value=44 Score=29.09 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
.+.+.++..-+++|++|....|.--....+=+|++-|+...++.....-+|+
T Consensus 126 ~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~ 177 (466)
T KOG2532|consen 126 IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGT 177 (466)
T ss_pred hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHH
Confidence 3434567888999999999999999999999999999999999887776553
No 124
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=54.24 E-value=1e+02 Score=24.59 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
++.+...++.+++.....+....+..+..|++. +..++++.....+|
T Consensus 289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g 335 (375)
T TIGR00899 289 WALLMLQLLNAIFIGILAGIGMLYFQDLMPGRA-GAATTLYTNTGRVG 335 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHH
Confidence 334445566677777777888888888888875 57888877655444
No 125
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=54.24 E-value=98 Score=24.75 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI 158 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~ 158 (164)
.+...++.|++.....+.......+..| +.++..++++...
T Consensus 303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 343 (385)
T TIGR00710 303 IIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTL 343 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence 3445677888899999988888888877 4688888876543
No 126
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=54.08 E-value=44 Score=26.46 Aligned_cols=42 Identities=7% Similarity=-0.071 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 122 LILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 122 ~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
++.+++.....+.......+..|++.|+..+|++.....+|+
T Consensus 303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 344 (377)
T TIGR00890 303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG 344 (377)
T ss_pred HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHH
Confidence 344444444444455667788999999999999988877664
No 127
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=53.77 E-value=13 Score=32.23 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=63.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCch
Q 045605 67 KILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPAS 146 (164)
Q Consensus 67 s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~ 146 (164)
+|.+=+++|++++++.++..+... |++-...-+++.|.-+-.-.|.+....+.=-|++
T Consensus 92 npr~fm~~gLilsai~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 92 NPRYFMAFGLILSAIVNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCceeehHHHHHHHHHHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 455667899999999988766552 6666677789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcC
Q 045605 147 MRNLGIALYLTIIGIGS 163 (164)
Q Consensus 147 mks~~~~~~~l~~~~g~ 163 (164)
-||.-.++|..+-.+|.
T Consensus 150 eRG~~~siWn~shNiGG 166 (448)
T COG2271 150 ERGTWWSIWNTSHNIGG 166 (448)
T ss_pred ccCceEEEehhhhhccc
Confidence 99999999998877663
No 128
>PRK15075 citrate-proton symporter; Provisional
Probab=53.10 E-value=39 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI 158 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~ 158 (164)
++..-++.|+++....+....+..+..|++-|+..++++...
T Consensus 120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~ 161 (434)
T PRK15075 120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSAS 161 (434)
T ss_pred HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHH
Confidence 455567899999988888888999999999999999986654
No 129
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=52.96 E-value=63 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCC-------chhHHHHHHHHHHHHhhc
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVP-------ASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP-------~~mks~~~~~~~l~~~~g 162 (164)
++.+...++.+++.....+.......+.+| ++.++...|++.+...+|
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g 366 (437)
T TIGR00792 312 PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG 366 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 344455677888888888887777776654 567899999887765544
No 130
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=51.36 E-value=82 Score=26.04 Aligned_cols=40 Identities=5% Similarity=-0.226 Sum_probs=28.5
Q ss_pred HHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 124 LGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 124 ~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
.++.-....+...++..+..|++.|++.+|+......+|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~ 329 (368)
T TIGR00903 290 AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAIS 329 (368)
T ss_pred HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHH
Confidence 3333334445566778899999999999999887665543
No 131
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.71 E-value=24 Score=32.70 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=60.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHH----HHhhccc-----ccc-------ccc-----------CCC--CCcch-hhh
Q 045605 66 IKILQRIGIGMGFSVLAMTVAAFVES----KRLKIVP-----KEI-------IHE-----------GKR--GPLSM-IVF 115 (164)
Q Consensus 66 ~s~l~ki~iG~~l~~ls~~~~~~ve~----~r~~~~~-----~~g-------~~~-----------~~~--~~~~~-s~~ 115 (164)
...++-||+|.++.+++.++.++.+. ++++... +.. +.+ +.. ...+. .+.
T Consensus 159 ~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (735)
T KOG3626|consen 159 GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFL 238 (735)
T ss_pred cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHH
Confidence 34556789999999999988776632 2221110 000 000 000 11122 222
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.++..-+++|+|+.-+.+.|..+.=+.+=++-.++-.|+.+....+|
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lG 285 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILG 285 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhh
Confidence 34456799999999999999999888877777777777766655544
No 132
>PRK12307 putative sialic acid transporter; Provisional
Probab=49.46 E-value=73 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=22.5
Q ss_pred hhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 134 GLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 134 ~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
....+..+..|++.|+..+|+......+|
T Consensus 341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~ 369 (426)
T PRK12307 341 LVPKFLYDYFPLEVRGLGTGLIYNLAATS 369 (426)
T ss_pred HHHHHHHHhCcHHHHhhhhhHHHHHHhHH
Confidence 34466789999999999999877665554
No 133
>PRK03633 putative MFS family transporter protein; Provisional
Probab=49.41 E-value=43 Score=27.38 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 118 APQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 118 ip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+...++.++++....|.......+++|++.++...+.+....++|
T Consensus 289 ~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 333 (381)
T PRK03633 289 APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVG 333 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 345577788888889999999999999877666666654444444
No 134
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=48.03 E-value=27 Score=30.03 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCch---hHHHHHHHHHHHHhhcC
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPAS---MRNLGIALYLTIIGIGS 163 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~---mks~~~~~~~l~~~~g~ 163 (164)
+++...++.++++.+..|....+..++.|++ -|+...++++....+|.
T Consensus 104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~ 154 (475)
T TIGR00924 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS 154 (475)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH
Confidence 3445567889999998888888888887764 37777787777666653
No 135
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=48.00 E-value=88 Score=26.21 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=23.2
Q ss_pred hhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 133 VGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 133 ~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
|.......+..|++.|+..+|+......+|
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 412 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIA 412 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHH
Confidence 566677788889999999999876654443
No 136
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=46.50 E-value=1.8e+02 Score=24.46 Aligned_cols=44 Identities=11% Similarity=-0.093 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 118 APQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 118 ip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+....+.+..-.+..+......-+.+|+ ..+..+|+......+|
T Consensus 365 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~ 408 (465)
T TIGR00894 365 IIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIG 408 (465)
T ss_pred HHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHH
Confidence 3333444443333344444455566776 7899998888776655
No 137
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=45.97 E-value=70 Score=27.14 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 121 YLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 121 y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
-++.|+++.+..+.......+..| +-|+...|++.....+|
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g 155 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVF 155 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHH
Confidence 366788888766666665555555 67999999988777665
No 138
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=45.65 E-value=93 Score=24.82 Aligned_cols=37 Identities=16% Similarity=-0.014 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605 114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL 150 (164)
Q Consensus 114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~ 150 (164)
.++++..-++.+..+....|...+...+..|++-|..
T Consensus 87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~ 123 (375)
T TIGR00899 87 YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREA 123 (375)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhh
Confidence 3444445566777777778888887777777776653
No 139
>PRK15011 sugar efflux transporter B; Provisional
Probab=44.89 E-value=1.2e+02 Score=25.00 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 121 YLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 121 y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.++.++...+..+.+.....+..|++ |+..++++.....+|
T Consensus 312 ~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg 352 (393)
T PRK15011 312 QLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVG 352 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHH
Confidence 34444444444455555556677876 888888876555444
No 140
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=44.65 E-value=88 Score=27.05 Aligned_cols=50 Identities=28% Similarity=0.331 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
++.+++.--++.|+|=-+.+...--+..+-+|++.|+...++..+...+|
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~G 190 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIG 190 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHH
Confidence 77888888899999999999888888999999999999999999888766
No 141
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=44.07 E-value=34 Score=30.63 Aligned_cols=74 Identities=15% Similarity=0.031 Sum_probs=52.1
Q ss_pred hHHHHHHHhhCcchHHHHHHhHhcc-cCCCCcccCCccchhhhHHHHH-------HhCCCCCCCchhhhHHHHHHHHHHH
Q 045605 12 TSLTFGISVAQASTSSVKQGATMNR-KVGNNFRIPPASIYSLGAVANL-------LTGNERGIKILQRIGIGMGFSVLAM 83 (164)
Q Consensus 12 ~~i~f~~~~~Q~~s~~~~q~~~~d~-~i~~~~~ip~~~~~~~~~~~ii-------~~~~~~~~s~l~ki~iG~~l~~ls~ 83 (164)
...+.|..++|..+.++.|+..++. +.. +|.+=.+..+..|.+.++ .-++++ |.--.+..+|.++.+++.
T Consensus 193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~-p~gsp~t~i~~Vlvaa~~ 270 (571)
T KOG1237|consen 193 PSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYKK-PRGSPKTRIGQVLVAAAF 270 (571)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEeeC-CCCCchhHHHHHHHHHHH
Confidence 3567899999999999999887776 344 688888888888888776 112222 333367777888887777
Q ss_pred HHHH
Q 045605 84 TVAA 87 (164)
Q Consensus 84 ~~~~ 87 (164)
-..+
T Consensus 271 k~~~ 274 (571)
T KOG1237|consen 271 KRKA 274 (571)
T ss_pred HHhc
Confidence 6544
No 142
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=41.52 E-value=51 Score=26.53 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=27.2
Q ss_pred HHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 124 LGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 124 ~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.+..-....+....+..+.+|++.|+..+|+......+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 376 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLG 376 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHH
Confidence 333333334455567788899999999999987766554
No 143
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=39.14 E-value=1.1e+02 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 124 LGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 124 ~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
..+.|+...---.|...+ -|++ ++-.++..+...++|+
T Consensus 100 ~a~~DV~aDa~vvE~~~~-~p~~-~g~lqS~~~~~~~~G~ 137 (433)
T PF03092_consen 100 YAFADVAADALVVELARR-EPES-RGDLQSFVWGVRSVGS 137 (433)
T ss_pred HHHHHHhhhHHHHHHhhc-CCch-hHHHHHHHHHHHHHHH
Confidence 333444444444455433 3555 7777776665555543
No 144
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=38.79 E-value=1.4e+02 Score=26.40 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=51.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHH-HHhhhhhhHHHhhccCCch
Q 045605 68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSG-DGFTLVGLQEYFYAQVPAS 146 (164)
Q Consensus 68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~-E~~~~~~~le~~~~~aP~~ 146 (164)
..+-+-.|.+++.++.++...+|.. ++. +.+++...+++.|+| -.+..-=.+--..+-.+++
T Consensus 101 ~k~Pli~s~ii~~~g~llY~~l~~~----------------~~~-~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR 163 (488)
T KOG2325|consen 101 VKKPLIVSFLIAIIGNLLYLALAYV----------------PNG-VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDR 163 (488)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhc----------------ccc-hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccch
Confidence 3556788999999999988777632 111 668888899999999 4454444555555567888
Q ss_pred hHHHHHHHH
Q 045605 147 MRNLGIALY 155 (164)
Q Consensus 147 mks~~~~~~ 155 (164)
+|.++....
T Consensus 164 ~rA~a~~~~ 172 (488)
T KOG2325|consen 164 PRAFAATSG 172 (488)
T ss_pred HHHHHHhhh
Confidence 888877666
No 145
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=37.55 E-value=80 Score=25.09 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHH-HHHHHhhc
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIAL-YLTIIGIG 162 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~-~~l~~~~g 162 (164)
.+...++.+++.....+.......+..|++.|+..+++ +.+...+|
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g 361 (394)
T TIGR00883 315 FFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIF 361 (394)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHH
Confidence 34445667777767777888889999999999988886 33433333
No 146
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=37.25 E-value=1.8e+02 Score=23.09 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=34.3
Q ss_pred hhHHHHH-HHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 114 VFCLAPQ-YLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 114 ~~wlip~-y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
..|++-. ..+.+.+..+...+.+--..+.-|+ -||.+.|+---..+++
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLS 143 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLS 143 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhH
Confidence 3455544 4566678888888888888899997 5998888765555543
No 147
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=34.82 E-value=99 Score=26.78 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=51.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCch
Q 045605 67 KILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPAS 146 (164)
Q Consensus 67 s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~ 146 (164)
...+-+.+|.++.+++.+.+++.. ..... +....+++++++.+..|....+..++-|++
T Consensus 79 G~r~~~~~g~~~~~~g~~~~~~~~-------------------~~~~l--l~~~~~l~~ig~g~~~~~~~~li~~~~p~~ 137 (489)
T PRK10207 79 GTKRTIVLGAIVLAIGYFMTGMSL-------------------LKPDL--IFIALGTIAVGNGLFKANPASLLSKCYPPK 137 (489)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc-------------------cchhH--HHHHHHHHHhccccccCCHHHHHHHhcCCC
Confidence 344556677777777766555431 00111 224567789999999999999999999877
Q ss_pred --hHHHHHHHHHHHHhhcC
Q 045605 147 --MRNLGIALYLTIIGIGS 163 (164)
Q Consensus 147 --mks~~~~~~~l~~~~g~ 163 (164)
-|+...+++++...+|.
T Consensus 138 ~~~~~~~~~~~~~~~nig~ 156 (489)
T PRK10207 138 DPRLDGAFTLFYMSINIGS 156 (489)
T ss_pred chhhhcchhHHHHHHHHHH
Confidence 34667777887776664
No 148
>PF13347 MFS_2: MFS/sugar transport protein
Probab=33.57 E-value=1.6e+02 Score=24.56 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCC------
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVP------ 144 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP------ 144 (164)
=+..|.++.+++.+....+. +-+.+|.....++.|++-....+.......+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~t 351 (428)
T PF13347_consen 292 VYIIGLLLAALGFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKT 351 (428)
T ss_pred ehhhhHHHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhc
Confidence 45567777777766655552 1366888888999999999888888888887766
Q ss_pred -chhHHHHHHHHHHHHhhc
Q 045605 145 -ASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 145 -~~mks~~~~~~~l~~~~g 162 (164)
++..|+..|++.+..-+|
T Consensus 352 g~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 352 GRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred CCCchHHHHHhhhhhhHHH
Confidence 355688888888765544
No 149
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=31.53 E-value=1.5e+02 Score=25.78 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHh
Q 045605 74 IGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYF 139 (164)
Q Consensus 74 iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~ 139 (164)
-|+++.++.|+.-.+.|..++ .++| -.||++.|++-++.+...+++.
T Consensus 300 YgiLFI~LTF~~fflfE~~~~---------------~~iH----piQY~LVGlAl~lFYlLLLSlS 346 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSK---------------LRIH----PIQYLLVGLALVLFYLLLLSLS 346 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------Cccc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899999889996542 2344 2488888888887776666553
No 150
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=30.91 E-value=3e+02 Score=22.85 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=27.3
Q ss_pred HHHHHHHHH-HHHHHhhhhhhHHHhhccCCchh
Q 045605 116 CLAPQYLIL-GSGDGFTLVGLQEYFYAQVPASM 147 (164)
Q Consensus 116 wlip~y~l~-~~~E~~~~~~~le~~~~~aP~~m 147 (164)
-+.+..+.+ ++.|..+...-+.|..+..||-+
T Consensus 188 ~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 188 AMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 356667776 99999999999999999999876
No 151
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=30.39 E-value=1.6e+02 Score=25.29 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH-HHHhh
Q 045605 112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL-TIIGI 161 (164)
Q Consensus 112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~-l~~~~ 161 (164)
.+++|+++--.++++-=-+.-+....+.++..|+++.++...+.+ ++.++
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~ 360 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQI 360 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHH
Confidence 466888888899999888999999999999999999988887753 33333
No 152
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=28.25 E-value=63 Score=26.71 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 045605 117 LAPQYLILGSGDGFTLVGL 135 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~ 135 (164)
..|-|+++|+|-+|.|..+
T Consensus 253 ~~~G~ilIGLGlvCySIsS 271 (347)
T PF10951_consen 253 NAPGYILIGLGLVCYSISS 271 (347)
T ss_pred CCcceeeeehhhHHHHHHH
Confidence 4567888888888877654
No 153
>PRK09952 shikimate transporter; Provisional
Probab=27.98 E-value=3.6e+02 Score=22.56 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHH
Q 045605 121 YLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALY 155 (164)
Q Consensus 121 y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~ 155 (164)
.++.+++-....+.......+..|.+.|+...|+-
T Consensus 350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~ 384 (438)
T PRK09952 350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVG 384 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHH
Confidence 34445565555666667778889999998888874
No 154
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=27.75 E-value=1.1e+02 Score=21.37 Aligned_cols=29 Identities=21% Similarity=0.435 Sum_probs=21.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 045605 66 IKILQRIGIGMGFSVLAMTVAAFVESKRL 94 (164)
Q Consensus 66 ~s~l~ki~iG~~l~~ls~~~~~~ve~~r~ 94 (164)
.+..+|+.+|+.+.++.+++.+++.....
T Consensus 2 l~I~~KL~~~f~~~~~l~~~~~~~~~~~l 30 (181)
T PF12729_consen 2 LSIRTKLILGFGLIILLLLIVGIVGLYSL 30 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999888888877766655544
No 155
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=27.74 E-value=1.5e+02 Score=23.84 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
|..+.+..+++.|.|-.+..++..-+..+..|++-++..+++-....++|.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~ 59 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGT 59 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHH
Confidence 567778889999999999999999999999888778877777777666653
No 156
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=26.94 E-value=1e+02 Score=24.96 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHh
Q 045605 73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYF 139 (164)
Q Consensus 73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~ 139 (164)
.+++.+=.+-|.....+|-+|++..+..||.......-+.-++..+|.-++..++-++..-+...|.
T Consensus 109 ~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~ 175 (283)
T PF02076_consen 109 LICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILTLRRFI 175 (283)
T ss_pred HHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777888889999999999888886432223333344455665555555555555555554
No 157
>PRK11043 putative transporter; Provisional
Probab=26.19 E-value=3.6e+02 Score=21.92 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI 158 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~ 158 (164)
.+..+.+.+++.....+.......++.|+ .++..+|+....
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~ 339 (401)
T PRK11043 299 LLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTL 339 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHH
Confidence 33446677888888888877777777776 589988888764
No 158
>PRK03893 putative sialic acid transporter; Provisional
Probab=25.97 E-value=1.5e+02 Score=25.02 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=23.3
Q ss_pred hhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 132 LVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 132 ~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.+.......+..|++.|+..+|++.....+|
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 414 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALG 414 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHH
Confidence 3444556778899999999999987766554
No 159
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=25.52 E-value=4.4e+02 Score=23.22 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHH
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTII 159 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~ 159 (164)
.-.+-+|.+.+..---..++++.|..+.||++..++-|.+-.--.
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLs 414 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLS 414 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHH
Confidence 334568899999988999999999999999999999888755433
No 160
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=24.34 E-value=3.9e+02 Score=21.66 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++.+...++.+++-.+..|.......+..|+ .++...++......+|
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~lg 346 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-LAGTAGALLGGLQNIG 346 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 344555556777888888889999888888885 5688888776554443
No 161
>PRK11715 inner membrane protein; Provisional
Probab=24.30 E-value=2.2e+02 Score=24.79 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHh
Q 045605 74 IGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYF 139 (164)
Q Consensus 74 iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~ 139 (164)
-|+++.++.++.-.+.|..++ .++| -.||+|.|++-++.+.-.+++.
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~---------------~~iH----piQYlLVGlAl~lFYLLLLSlS 352 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK---------------LRIH----PVQYLLVGLALVLFYLLLLSLS 352 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---------------ceec----HHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899988889986432 2344 2488888888887776666553
No 162
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=22.88 E-value=2.7e+02 Score=24.05 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchh--HHHHHHHHHHHHhhc
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASM--RNLGIALYLTIIGIG 162 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~m--ks~~~~~~~l~~~~g 162 (164)
+....++.+++..+..+....+..++.|++- ++...++++....+|
T Consensus 115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG 162 (500)
T PRK09584 115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIG 162 (500)
T ss_pred HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHH
Confidence 3445678889998888888888888877542 334566666655554
No 163
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=22.72 E-value=61 Score=27.84 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605 116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163 (164)
Q Consensus 116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~ 163 (164)
+.+..-++.+++-.+.....+.+..+.+|++.+++..|+.....++|.
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~ 400 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGS 400 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence 444445677777777788889999999999999999999888777663
No 164
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=21.64 E-value=5.5e+02 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH--HHHHHHHHHHhhcC
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN--LGIALYLTIIGIGS 163 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks--~~~~~~~l~~~~g~ 163 (164)
.+.-+.+..++--...+..-++..+.+|++-|. ...+......++|+
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 333333334444445556678999999998764 56666555555554
No 165
>COG2149 Predicted membrane protein [Function unknown]
Probab=20.95 E-value=3.2e+02 Score=19.40 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=20.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHH
Q 045605 67 KILQRIGIGMGFSVLAMTVAAFVESK 92 (164)
Q Consensus 67 s~l~ki~iG~~l~~ls~~~~~~ve~~ 92 (164)
++..|-.+|.++..++++.+++.-.+
T Consensus 52 ~~~~r~~lg~fii~~gil~~a~g~~r 77 (120)
T COG2149 52 TPVIRELLGVFLILVGILLAALGALR 77 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999876554433
Done!