Query 045605
Match_columns 164
No_of_seqs 119 out of 1098
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 98.7 1.7E-09 5.8E-14 90.8 1.5 141 6-163 301-454 (524)
2 4aps_A DI-OR tripeptide H+ sym 98.4 1.3E-06 4.5E-11 72.4 8.9 142 4-163 283-435 (491)
3 2gfp_A EMRD, multidrug resista 94.2 0.48 1.6E-05 37.1 10.4 68 73-162 69-136 (375)
4 3o7q_A L-fucose-proton symport 94.0 0.83 2.8E-05 36.3 11.7 75 70-163 92-166 (438)
5 1pw4_A Glycerol-3-phosphate tr 93.4 0.31 1.1E-05 39.0 8.1 75 71-163 94-168 (451)
6 2xut_A Proton/peptide symporte 87.2 2.3 7.8E-05 34.8 7.9 50 113-162 108-160 (524)
7 4aps_A DI-OR tripeptide H+ sym 86.4 1.7 5.8E-05 35.2 6.7 50 113-162 107-158 (491)
8 4gc0_A D-xylose-proton symport 80.8 3.1 0.00011 33.6 6.0 51 112-162 124-174 (491)
9 1pw4_A Glycerol-3-phosphate tr 77.5 4.9 0.00017 31.8 6.1 49 113-161 345-393 (451)
10 2gfp_A EMRD, multidrug resista 62.9 8.1 0.00028 29.9 4.2 49 113-162 290-338 (375)
11 2cfq_A Lactose permease; trans 58.5 9.7 0.00033 30.3 4.1 41 115-155 313-353 (417)
12 4gc0_A D-xylose-proton symport 56.4 51 0.0017 26.2 8.1 34 129-162 385-418 (491)
13 3o7q_A L-fucose-proton symport 33.8 1.3E+02 0.0046 23.1 7.1 39 117-156 350-388 (438)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.75 E-value=1.7e-09 Score=90.79 Aligned_cols=141 Identities=17% Similarity=0.288 Sum_probs=102.1
Q ss_pred ehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCCcccCCccchhhhHHHHH---------H----hCCCCCCCchhhh
Q 045605 6 TIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL---------L----TGNERGIKILQRI 72 (164)
Q Consensus 6 ~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii---------~----~~~~~~~s~l~ki 72 (164)
.++++....+++..+.|..+.+..+...+|.+. + ++.+.+..++.+..+ . +|+++++++.+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (524)
T 2xut_A 301 ILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKM 376 (524)
T ss_dssp HHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHH
Confidence 567777778888889998888877776665432 2 456666666554433 1 3444456778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605 73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI 152 (164)
Q Consensus 73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~ 152 (164)
.+|+++.+++++..+..+..+. ...+.+.+|+++.+++.|+++.+..+...++..+.+|++.|+..+
T Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 443 (524)
T 2xut_A 377 GAGIAITGLSWIVVGTIQLMMD-------------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIM 443 (524)
T ss_dssp HTHHHHHHHHHHTTTTTTTTTT-------------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHH
Confidence 9999999888877655432110 113467889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 045605 153 ALYLTIIGIGS 163 (164)
Q Consensus 153 ~~~~l~~~~g~ 163 (164)
|++.....+|+
T Consensus 444 g~~~~~~~~g~ 454 (524)
T 2xut_A 444 SFWTLSVTVGN 454 (524)
T ss_dssp HHHGGGHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877764
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.37 E-value=1.3e-06 Score=72.38 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=104.3
Q ss_pred eeehhHHhhHHHHHHHhhCcchHHHHHHhH-hcccCCCCcccCCccchhhhHHHHH---------HhCC-CCCCCchhhh
Q 045605 4 LNTIPIWVTSLTFGISVAQASTSSVKQGAT-MNRKVGNNFRIPPASIYSLGAVANL---------LTGN-ERGIKILQRI 72 (164)
Q Consensus 4 ~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~-~d~~i~~~~~ip~~~~~~~~~~~ii---------~~~~-~~~~s~l~ki 72 (164)
.+.+++++...+++..+.+..+....+..+ .+.+ ..+.+.+..++.+..+ .+|. ++.+....++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 446788888899999999888876554433 2322 1566677766665544 3343 3445678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605 73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI 152 (164)
Q Consensus 73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~ 152 (164)
.+|+++.+++++..+...... + ...+.+.+|+++.+++.++++.+..+....+..+..|++.|+.++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 999999999988776664321 1 123467889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 045605 153 ALYLTIIGIGS 163 (164)
Q Consensus 153 ~~~~l~~~~g~ 163 (164)
|++.....+|+
T Consensus 425 g~~~~~~~~g~ 435 (491)
T 4aps_A 425 SMWFLSSSVGS 435 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988777664
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=94.24 E-value=0.48 Score=37.13 Aligned_cols=68 Identities=19% Similarity=0.076 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605 73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI 152 (164)
Q Consensus 73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~ 152 (164)
.+|.++.+++.+..+... +.++++...++.|+++....+....+..+..|++.|+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (375)
T 2gfp_A 69 LVGMSIFMLATLVAVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHAN 126 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHH
T ss_pred HHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHH
Confidence 466666666665554431 4566777889999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 045605 153 ALYLTIIGIG 162 (164)
Q Consensus 153 ~~~~l~~~~g 162 (164)
+++....++|
T Consensus 127 ~~~~~~~~~g 136 (375)
T 2gfp_A 127 SLLNMGILVS 136 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877765
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=94.04 E-value=0.83 Score=36.33 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605 70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN 149 (164)
Q Consensus 70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks 149 (164)
+-+.+|.++.+++.+..+.... .-+.++++...++.|+++....+....+..+..|++.|+
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 152 (438)
T 3o7q_A 92 AGIITGLFLYALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH 152 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH
Confidence 3356677777777665533210 125577788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 045605 150 LGIALYLTIIGIGS 163 (164)
Q Consensus 150 ~~~~~~~l~~~~g~ 163 (164)
..++++....++|.
T Consensus 153 ~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 153 FRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877663
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.43 E-value=0.31 Score=38.97 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605 71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL 150 (164)
Q Consensus 71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~ 150 (164)
=+.+|.++.+++.+..+..... .-+.++++...++.|+++....+....+..+..|++.|+.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 155 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWA------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG 155 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHH------------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhc------------------cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhH
Confidence 3456777777776665542100 1245677788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 045605 151 GIALYLTIIGIGS 163 (164)
Q Consensus 151 ~~~~~~l~~~~g~ 163 (164)
.++++....++|.
T Consensus 156 ~~~~~~~~~~~g~ 168 (451)
T 1pw4_A 156 IVSVWNCAHNVGG 168 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877764
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=87.19 E-value=2.3 Score=34.85 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHH---HHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIAL---YLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~---~~l~~~~g 162 (164)
+.++++...++.|+++....+....+..+..|++.|+...+. +.....+|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999766665 55555444
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=86.37 E-value=1.7 Score=35.24 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh--HHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM--RNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m--ks~~~~~~~l~~~~g 162 (164)
+.++++...++.|+++....+....+..+..|++. |+...+++.....+|
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 45667778899999999999999999999999988 777888777766655
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=80.84 E-value=3.1 Score=33.57 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
-+.+.++..-++.|+++....+.+..+..+.+|++.|+...+++.....+|
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 356677888999999999999999999999999999999999988776654
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=77.50 E-value=4.9 Score=31.80 Aligned_cols=49 Identities=4% Similarity=-0.231 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhh
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGI 161 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~ 161 (164)
+.++.+...++.|++.....+....+..+..|++.|+..+|++.....+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 4556666778888888888888889999999999999999999877665
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=62.86 E-value=8.1 Score=29.87 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
+.++.+...++.+++.....+.......+..| +.|+..+|+......+|
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIG 338 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHH
Confidence 44555567788999999999999999999999 78999999998876665
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=58.46 E-value=9.7 Score=30.32 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHH
Q 045605 115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALY 155 (164)
Q Consensus 115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~ 155 (164)
++++...++.+++.....+....+..+..|++.|++.+++.
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 34444445566665555666678888999999999988873
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=56.44 E-value=51 Score=26.21 Aligned_cols=34 Identities=9% Similarity=-0.075 Sum_probs=23.9
Q ss_pred HhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605 129 GFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162 (164)
Q Consensus 129 ~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g 162 (164)
.-..+...-+..+..|.+.|+..+|+......+|
T Consensus 385 ~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~ 418 (491)
T 4gc0_A 385 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLA 418 (491)
T ss_dssp TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHH
Confidence 3344555566677899999999999876554443
No 13
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=33.76 E-value=1.3e+02 Score=23.12 Aligned_cols=39 Identities=3% Similarity=-0.097 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH
Q 045605 117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL 156 (164)
Q Consensus 117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~ 156 (164)
.+...++.+++.....|.......+..|++ ++...++..
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH
Confidence 344558888999999999999989999988 888888765
Done!