Query 045606
Match_columns 107
No_of_seqs 63 out of 65
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 03:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 2.3E-14 5.1E-19 99.5 3.6 44 1-44 38-84 (102)
2 TIGR01791 CM_archaeal chorisma 33.0 39 0.00085 21.9 2.1 21 87-107 62-82 (83)
3 PF10930 DUF2737: Protein of u 23.2 32 0.0007 22.8 0.3 11 29-39 29-39 (54)
4 PF01817 CM_2: Chorismate muta 21.7 58 0.0013 20.6 1.3 21 87-107 58-78 (81)
5 KOG2268 Serine/threonine prote 20.1 75 0.0016 28.5 2.0 18 87-104 203-220 (465)
6 TIGR01805 CM_mono_grmpos monof 19.0 1.1E+02 0.0025 19.7 2.3 20 88-107 62-81 (81)
7 KOG3635 Phosphorylase kinase [ 18.0 1.3E+02 0.0027 29.8 3.1 36 40-94 500-538 (1150)
8 TIGR01797 CM_P_1 chorismate mu 18.0 1.1E+02 0.0025 19.9 2.1 21 87-107 62-82 (83)
9 PRK06285 chorismate mutase; Pr 16.1 1E+02 0.0022 20.8 1.6 20 87-106 70-89 (96)
10 PF13960 DUF4218: Domain of un 15.8 1E+02 0.0022 22.8 1.7 21 86-106 40-60 (128)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.48 E-value=2.3e-14 Score=99.53 Aligned_cols=44 Identities=43% Similarity=0.587 Sum_probs=36.9
Q ss_pred CccchhhhhhhhccCCCCCCCCccccc--ccccceeccccC-CCCCC
Q 045606 1 MQATESARAKIQANNSPRSSPDVQDRD--TYIKKRHSLPVA-NGRHG 44 (107)
Q Consensus 1 MAATESAKAKlRsqsSPR~rpd~~ek~--~~~kkR~SLPss-NGk~~ 44 (107)
||+|||||||+|+|++||++++..|.. ...+||||||.+ ++...
T Consensus 38 Ma~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~ 84 (102)
T PF13178_consen 38 MAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSS 84 (102)
T ss_pred cchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcC
Confidence 999999999999999999999987543 267899999976 44443
No 2
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=32.96 E-value=39 Score=21.85 Aligned_cols=21 Identities=5% Similarity=0.275 Sum_probs=18.4
Q ss_pred ecchhHHHHHHHHHHHhhhcC
Q 045606 87 FKPQFFETLMVLIVDICRELE 107 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (107)
+.|+|.+.++-.|++.|+.++
T Consensus 62 l~~~~i~~if~~i~~~s~~~Q 82 (83)
T TIGR01791 62 LDVLKLKEIFEILMSLSKEEQ 82 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 678999999999999999764
No 3
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=23.25 E-value=32 Score=22.81 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=9.2
Q ss_pred cccceeccccC
Q 045606 29 YIKKRHSLPVA 39 (107)
Q Consensus 29 ~~kkR~SLPss 39 (107)
..-||+|||+.
T Consensus 29 ELlkRnSFpsv 39 (54)
T PF10930_consen 29 ELLKRNSFPSV 39 (54)
T ss_pred HHHhhcCCCCC
Confidence 35689999998
No 4
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=21.72 E-value=58 Score=20.61 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=17.1
Q ss_pred ecchhHHHHHHHHHHHhhhcC
Q 045606 87 FKPQFFETLMVLIVDICRELE 107 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (107)
+.|.+.+.++-.|++.|+.+|
T Consensus 58 l~~~~i~~if~~ii~~s~~~Q 78 (81)
T PF01817_consen 58 LDPEFIERIFRAIIEESRAIQ 78 (81)
T ss_dssp SEHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999888753
No 5
>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]
Probab=20.10 E-value=75 Score=28.53 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.8
Q ss_pred ecchhHHHHHHHHHHHhh
Q 045606 87 FKPQFFETLMVLIVDICR 104 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ 104 (107)
--|+.|+.||-||||+++
T Consensus 203 d~~~ly~~lm~~Iv~la~ 220 (465)
T KOG2268|consen 203 DPPTLYDDLMGLIVRLAN 220 (465)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 358999999999999876
No 6
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=19.03 E-value=1.1e+02 Score=19.75 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.8
Q ss_pred cchhHHHHHHHHHHHhhhcC
Q 045606 88 KPQFFETLMVLIVDICRELE 107 (107)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~ 107 (107)
.|.+.+.++-.|++.|++++
T Consensus 62 ~~~~i~~if~~I~~~Sr~~Q 81 (81)
T TIGR01805 62 YRETIEEFFRNIMDISKEVQ 81 (81)
T ss_pred CHHHHHHHHHHHHHHHHhcC
Confidence 47788999999999999864
No 7
>KOG3635 consensus Phosphorylase kinase [Carbohydrate transport and metabolism]
Probab=18.05 E-value=1.3e+02 Score=29.81 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=25.7
Q ss_pred CCCCC-CCccccchhhhccCCcCCCeeeeccCCCCCCccceeee--EEEeecchhHHH
Q 045606 40 NGRHG-SPRIQRSLSQAQQGAKGNGTLHVTCPNTDLGTVGLLDV--TVHIFKPQFFET 94 (107)
Q Consensus 40 NGk~~-SPR~qR~~sq~q~s~KG~gpik~t~~~~~~g~~~~~~v--~~~~~~~~~~~~ 94 (107)
|.|++ |.|.-|+ . ..|||.|+..+ ...+|-||||+.
T Consensus 500 N~klgLSGRP~Rp---i----------------G~LgTSKlY~I~~~~v~ftPqf~D~ 538 (1150)
T KOG3635|consen 500 NNKLGLSGRPDRP---I----------------GVLGTSKLYRIRGKIVTFTPQFFDL 538 (1150)
T ss_pred cccCCCCCCCCCc---c----------------cccchhhHHhhcCcEEEEehhhhhh
Confidence 77777 8887777 2 24677776544 567899999985
No 8
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=17.98 E-value=1.1e+02 Score=19.95 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=17.6
Q ss_pred ecchhHHHHHHHHHHHhhhcC
Q 045606 87 FKPQFFETLMVLIVDICRELE 107 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (107)
+.|.|.+.++-.|++.|+.++
T Consensus 62 l~~~~i~~if~~ii~~S~~~Q 82 (83)
T TIGR01797 62 LDAHYITRLFQLIIEDSVLTQ 82 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHhc
Confidence 568899999999999998763
No 9
>PRK06285 chorismate mutase; Provisional
Probab=16.11 E-value=1e+02 Score=20.79 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=17.0
Q ss_pred ecchhHHHHHHHHHHHhhhc
Q 045606 87 FKPQFFETLMVLIVDICREL 106 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (107)
+.|.|.+.++-.|++.|+.+
T Consensus 70 l~~~~i~~if~~Ii~~s~~~ 89 (96)
T PRK06285 70 IDENIGLKIMKILMEHSKEL 89 (96)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999875
No 10
>PF13960 DUF4218: Domain of unknown function (DUF4218)
Probab=15.79 E-value=1e+02 Score=22.76 Aligned_cols=21 Identities=38% Similarity=0.891 Sum_probs=17.6
Q ss_pred eecchhHHHHHHHHHHHhhhc
Q 045606 86 IFKPQFFETLMVLIVDICREL 106 (107)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ 106 (107)
||-|.||...+=|++-+.+|+
T Consensus 40 ifppsffdim~HL~vHL~~~~ 60 (128)
T PF13960_consen 40 IFPPSFFDIMVHLLVHLVDEI 60 (128)
T ss_pred HcchhHhhhhHHHHHHHHHhh
Confidence 789999998888888887765
Done!