Query 045606
Match_columns 107
No_of_seqs 63 out of 65
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 05:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5t_A Appears to BE functiona 19.6 56 0.0019 25.1 2.2 17 89-105 89-105 (233)
2 2bec_B Sodium/hydrogen exchang 19.6 65 0.0022 18.7 2.0 16 89-104 22-37 (43)
3 3cuq_A Vacuolar-sorting protei 18.0 64 0.0022 24.8 2.2 17 89-105 70-86 (234)
4 3ups_A Iojap-like protein; PSI 12.9 74 0.0025 22.5 1.3 11 81-91 100-110 (136)
5 2o5a_A BH1328 protein; BHR21, 11.7 83 0.0028 21.9 1.2 10 81-90 84-93 (125)
6 2id1_A Hypothetical protein; a 11.1 87 0.003 22.0 1.1 11 81-91 84-94 (130)
7 2d8d_A Aroag, phospho-2-dehydr 10.4 1.4E+02 0.0049 18.5 1.9 21 87-107 65-85 (90)
8 1lk5_A D-ribose-5-phosphate is 9.7 1.5E+02 0.005 22.1 2.0 23 65-87 121-143 (229)
9 1m0s_A Ribose-5-phosphate isom 9.7 1.5E+02 0.0051 22.0 2.0 30 65-97 117-146 (219)
10 3ret_A Salicylate biosynthesis 9.3 1.3E+02 0.0045 19.3 1.4 20 87-106 70-89 (101)
No 1
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=19.60 E-value=56 Score=25.05 Aligned_cols=17 Identities=24% Similarity=0.798 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHhhh
Q 045606 89 PQFFETLMVLIVDICRE 105 (107)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ 105 (107)
-+||..|-|-|||||..
T Consensus 89 gdfy~eLavqIvEvC~~ 105 (233)
T 1u5t_A 89 NDFYYEVCLKVIEICRQ 105 (233)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 47999999999999975
No 2
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=19.58 E-value=65 Score=18.71 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHHhh
Q 045606 89 PQFFETLMVLIVDICR 104 (107)
Q Consensus 89 ~~~~~~~~~~~~~~~~ 104 (107)
+.+|+.+|.=|-|||-
T Consensus 22 ~~~~dhlmaGiEdi~G 37 (43)
T 2bec_B 22 TQFLDHLLTGIEDICG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhchHhhcC
Confidence 5688999999999983
No 3
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=17.97 E-value=64 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHhhh
Q 045606 89 PQFFETLMVLIVDICRE 105 (107)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ 105 (107)
-+||..|-|-|||||..
T Consensus 70 gdfy~eLavqIvEvC~~ 86 (234)
T 3cuq_A 70 GDFYYELGVQIIEVCLA 86 (234)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 47999999999999974
No 4
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=12.88 E-value=74 Score=22.52 Aligned_cols=11 Identities=36% Similarity=1.156 Sum_probs=9.6
Q ss_pred eeEEEeecchh
Q 045606 81 DVTVHIFKPQF 91 (107)
Q Consensus 81 ~v~~~~~~~~~ 91 (107)
+|-||||.|+-
T Consensus 100 dVvVHIf~~e~ 110 (136)
T 3ups_A 100 DIIIHLFRPEV 110 (136)
T ss_dssp SEEEEEECHHH
T ss_pred CEEEEeCCHHH
Confidence 79999999974
No 5
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=11.75 E-value=83 Score=21.86 Aligned_cols=10 Identities=50% Similarity=0.949 Sum_probs=9.1
Q ss_pred eeEEEeecch
Q 045606 81 DVTVHIFKPQ 90 (107)
Q Consensus 81 ~v~~~~~~~~ 90 (107)
+|-||||.|+
T Consensus 84 dVvVHif~~e 93 (125)
T 2o5a_A 84 DVVVHVFHKD 93 (125)
T ss_dssp SEEEEEEETT
T ss_pred CEEEEeCCHH
Confidence 7999999996
No 6
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=11.06 E-value=87 Score=21.99 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=9.6
Q ss_pred eeEEEeecchh
Q 045606 81 DVTVHIFKPQF 91 (107)
Q Consensus 81 ~v~~~~~~~~~ 91 (107)
+|-||||.|+-
T Consensus 84 dVvVHIf~~e~ 94 (130)
T 2id1_A 84 DVVVHVMLPAV 94 (130)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEcCCHHH
Confidence 79999999964
No 7
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=10.38 E-value=1.4e+02 Score=18.52 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=15.0
Q ss_pred ecchhHHHHHHHHHHHhhhcC
Q 045606 87 FKPQFFETLMVLIVDICRELE 107 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (107)
+.|.+.+.++-.|++.|+.++
T Consensus 65 l~~~~i~~if~~ii~~s~~~q 85 (90)
T 2d8d_A 65 FPDETIRKLFKEIFKASLDLE 85 (90)
T ss_dssp SCHHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888764
No 8
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=9.73 E-value=1.5e+02 Score=22.06 Aligned_cols=23 Identities=9% Similarity=-0.220 Sum_probs=17.9
Q ss_pred eeeccCCCCCCccceeeeEEEee
Q 045606 65 LHVTCPNTDLGTVGLLDVTVHIF 87 (107)
Q Consensus 65 ik~t~~~~~~g~~~~~~v~~~~~ 87 (107)
...+|.++.||+...+||||.-|
T Consensus 121 aD~SK~~~~lg~~~~lPvEV~p~ 143 (229)
T 1lk5_A 121 VDERKLVDYLCQKMPVPIEVIPQ 143 (229)
T ss_dssp EEGGGBCSSTTSSCCEEEEECGG
T ss_pred EchhhhhhhcCCCCCEEEEECcc
Confidence 34578889999877999999633
No 9
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=9.72 E-value=1.5e+02 Score=21.96 Aligned_cols=30 Identities=20% Similarity=0.053 Sum_probs=20.9
Q ss_pred eeeccCCCCCCccceeeeEEEeecchhHHHHHH
Q 045606 65 LHVTCPNTDLGTVGLLDVTVHIFKPQFFETLMV 97 (107)
Q Consensus 65 ik~t~~~~~~g~~~~~~v~~~~~~~~~~~~~~~ 97 (107)
...+|.++.||+...+||||. |.-++..+-
T Consensus 117 aD~SK~~~~lg~~~~lPvEV~---p~~~~~v~~ 146 (219)
T 1m0s_A 117 VDSSKQVDVLGSTFPLPVEVI---PMARSQVGR 146 (219)
T ss_dssp EEGGGBCSSTTSSSCEEEEEC---GGGHHHHHH
T ss_pred EeCcHHhhccCCCCCEEEEEC---cchHHHHHH
Confidence 345788899998779999996 444444333
No 10
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=9.33 E-value=1.3e+02 Score=19.29 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.5
Q ss_pred ecchhHHHHHHHHHHHhhhc
Q 045606 87 FKPQFFETLMVLIVDICREL 106 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (107)
+.|.|.+.++-.|++.|+.+
T Consensus 70 l~~~~i~~if~~ii~~s~~~ 89 (101)
T 3ret_A 70 LDAPFVEGLFAQIIHWYIAE 89 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888765
Done!