Query 045606
Match_columns 107
No_of_seqs 63 out of 65
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 05:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045606.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045606hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5ta1 a.4.5.54 (A:20-164) Va 38.9 7.7 0.00056 26.6 2.2 17 89-105 70-86 (145)
2 d1ylqa1 d.218.1.5 (A:1-90) Put 30.0 11 0.00082 23.0 1.7 17 80-96 64-80 (90)
3 d2o5aa1 d.218.1.12 (A:2-114) U 13.3 33 0.0024 21.6 1.2 12 80-91 82-93 (113)
4 d2vjva1 d.58.57.1 (A:6-130) IS 12.3 63 0.0046 20.1 2.4 22 86-107 26-47 (125)
5 d1f15a_ b.121.4.5 (A:) Cucumov 11.7 27 0.002 24.4 0.4 48 19-69 14-64 (157)
6 d2id1a1 d.218.1.12 (A:1-120) H 9.9 48 0.0035 21.0 1.1 11 81-91 84-94 (120)
7 d1zroa2 a.264.1.1 (A:283-596) 6.8 1.2E+02 0.0087 21.7 2.3 20 87-106 196-215 (314)
8 d2v8qa1 d.129.6.2 (A:396-548) 6.7 81 0.0059 21.5 1.2 15 90-104 139-153 (153)
9 d1e3db_ e.18.1.1 (B:) Nickel-i 6.6 1.5E+02 0.011 21.7 2.8 32 60-96 19-50 (537)
10 d2f5ga1 d.58.57.1 (A:2-131) Pu 6.5 1.3E+02 0.0096 18.6 2.1 21 86-106 26-46 (130)
No 1
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.88 E-value=7.7 Score=26.60 Aligned_cols=17 Identities=24% Similarity=0.798 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHhhh
Q 045606 89 PQFFETLMVLIVDICRE 105 (107)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ 105 (107)
-.||-.|-|-|||||.+
T Consensus 70 gDFYyEL~VqIvEvC~~ 86 (145)
T d1u5ta1 70 NDFYYEVCLKVIEICRQ 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 38999999999999975
No 2
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.00 E-value=11 Score=23.01 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=14.4
Q ss_pred eeeEEEeecchhHHHHH
Q 045606 80 LDVTVHIFKPQFFETLM 96 (107)
Q Consensus 80 ~~v~~~~~~~~~~~~~~ 96 (107)
.||++|++.|+=||-..
T Consensus 64 ~pvd~~v~tpeefe~~~ 80 (90)
T d1ylqa1 64 SPFEFHILTKKEWKMSK 80 (90)
T ss_dssp CSEEEEEECHHHHHHHH
T ss_pred CCeEEEEcCHHHHHHHH
Confidence 48999999999998543
No 3
>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}
Probab=13.29 E-value=33 Score=21.60 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=9.7
Q ss_pred eeeEEEeecchh
Q 045606 80 LDVTVHIFKPQF 91 (107)
Q Consensus 80 ~~v~~~~~~~~~ 91 (107)
-+|-||||.|+-
T Consensus 82 gdvvVHif~~e~ 93 (113)
T d2o5aa1 82 GDVVVHVFHKDE 93 (113)
T ss_dssp SSEEEEEEETTC
T ss_pred CCEEEEcCCHHH
Confidence 368999999863
No 4
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=12.26 E-value=63 Score=20.14 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.4
Q ss_pred eecchhHHHHHHHHHHHhhhcC
Q 045606 86 IFKPQFFETLMVLIVDICRELE 107 (107)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ 107 (107)
+|.++.-+.|--+|.++|++.+
T Consensus 26 vl~~~v~~~l~~~i~~~~~~~~ 47 (125)
T d2vjva1 26 VLVGAVEMRLKEIIQEVAKELR 47 (125)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHhhcC
Confidence 3567778888899999998753
No 5
>d1f15a_ b.121.4.5 (A:) Cucumovirus coat protein {CMV (Cucumber mosaic virus), strain fny [TaxId: 12305]}
Probab=11.67 E-value=27 Score=24.43 Aligned_cols=48 Identities=29% Similarity=0.283 Sum_probs=28.2
Q ss_pred CCCCcccccccccceeccccCCCCCC---CCccccchhhhccCCcCCCeeeecc
Q 045606 19 SSPDVQDRDTYIKKRHSLPVANGRHG---SPRIQRSLSQAQQGAKGNGTLHVTC 69 (107)
Q Consensus 19 ~rpd~~ek~~~~kkR~SLPssNGk~~---SPR~qR~~sq~q~s~KG~gpik~t~ 69 (107)
.+|...|+..++-+||+||.+-.+.. --+.|=- .+++-|=.+++-++.
T Consensus 14 vrPtkteKg~sfGqRL~lP~pvse~pKkkvs~vQ~r---lNPsPkFdStvWVtl 64 (157)
T d1f15a_ 14 LKPPKIDRGSYYGKRLLLPDSVTEYDKKLVSRLQIR---VNPLPKFDSTVWVTV 64 (157)
T ss_dssp ECCCCCCTTCEEEEECCCCHHHHTTTTSEEEEEEEE---EEECTTCCSCEEEEE
T ss_pred ecCCccccCcccceeEeccCchhhcchhheeEEEEe---cCCCcccCceeEEEE
Confidence 35677888878889999998622221 1122211 346666666665553
No 6
>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}
Probab=9.89 E-value=48 Score=20.98 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=9.5
Q ss_pred eeEEEeecchh
Q 045606 81 DVTVHIFKPQF 91 (107)
Q Consensus 81 ~v~~~~~~~~~ 91 (107)
+|-||||.|..
T Consensus 84 divVHif~~e~ 94 (120)
T d2id1a1 84 DVVVHVMLPAV 94 (120)
T ss_dssp TEEEEEECHHH
T ss_pred ceEEEeCCHHH
Confidence 68999999974
No 7
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II {Plasmodium falciparum [TaxId: 5833]}
Probab=6.81 E-value=1.2e+02 Score=21.70 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=16.9
Q ss_pred ecchhHHHHHHHHHHHhhhc
Q 045606 87 FKPQFFETLMVLIVDICREL 106 (107)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (107)
..||||.-|.=.+-|.|+|.
T Consensus 196 ~~PQflRW~~EW~e~FCk~r 215 (314)
T d1zroa2 196 NIPQFFRWFSEWGDDYCQDK 215 (314)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 57999999988888999873
No 8
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.72 E-value=81 Score=21.54 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHhh
Q 045606 90 QFFETLMVLIVDICR 104 (107)
Q Consensus 90 ~~~~~~~~~~~~~~~ 104 (107)
+|||...-||..++|
T Consensus 139 eFFEmCa~LI~~LAr 153 (153)
T d2v8qa1 139 EFFEMCANLIKILAQ 153 (153)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC
Confidence 599999999988765
No 9
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=6.57 E-value=1.5e+02 Score=21.65 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=24.1
Q ss_pred cCCCeeeeccCCCCCCccceeeeEEEeecchhHHHHH
Q 045606 60 KGNGTLHVTCPNTDLGTVGLLDVTVHIFKPQFFETLM 96 (107)
Q Consensus 60 KG~gpik~t~~~~~~g~~~~~~v~~~~~~~~~~~~~~ 96 (107)
-|.+.|+++. | .++..++.++++-+-.||.+|
T Consensus 19 EGh~~l~v~~-d----~g~V~~a~~~~~~~RGfEk~l 50 (537)
T d1e3db_ 19 EGHLRIEVEV-E----GGVIKEARSCATLFRGIETIL 50 (537)
T ss_dssp BSCEEEEEEE-E----TTEEEEEEEEECBCCCHHHHH
T ss_pred eeeEEEEEEE-e----CCEEEEEEEeeeccchHHHHh
Confidence 4667777765 2 256667888999999999987
No 10
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.48 E-value=1.3e+02 Score=18.62 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=15.7
Q ss_pred eecchhHHHHHHHHHHHhhhc
Q 045606 86 IFKPQFFETLMVLIVDICREL 106 (107)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ 106 (107)
+|.+..-+.|--+|.++|++.
T Consensus 26 vl~~~i~~~l~~~i~~~~~~~ 46 (130)
T d2f5ga1 26 TLVNEIAEYTKEVLKSIAEEL 46 (130)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhc
Confidence 355666777888889999874
Done!