BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045607
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl
Segment
Length = 297
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 47 PVPTNLYGDFFTGDAYVILKTVQ 69
>pdb|3DUK|A Chain A, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Mfla_0564) From Methylobacillus Flagellatus Kt
At 2.200 A Resolution
pdb|3DUK|B Chain B, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Mfla_0564) From Methylobacillus Flagellatus Kt
At 2.200 A Resolution
pdb|3DUK|C Chain C, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Mfla_0564) From Methylobacillus Flagellatus Kt
At 2.200 A Resolution
pdb|3DUK|D Chain D, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Mfla_0564) From Methylobacillus Flagellatus Kt
At 2.200 A Resolution
pdb|3DUK|E Chain E, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Mfla_0564) From Methylobacillus Flagellatus Kt
At 2.200 A Resolution
pdb|3DUK|F Chain F, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Mfla_0564) From Methylobacillus Flagellatus Kt
At 2.200 A Resolution
Length = 125
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 4 NTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLK 43
N Q+RI N +D G VA V+ +NF D F++LK
Sbjct: 72 NVQSRITN--IDIVGTVAHARVEAENWTNFKFSDLFLLLK 109
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound
To Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound
To Actin
Length = 377
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 24 PVQLHISSNFFLGDAFIVLKSI 45
PV ++ +FF GDA+++LK++
Sbjct: 31 PVPTNLYGDFFTGDAYVILKTV 52
>pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 147
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 29 PVPTNLYGDFFTGDAYVILKTVQ 51
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To
Actin
Length = 346
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 28 PVPPNLYGDFFTGDAYVILKTVQ 50
>pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif
Hybrid In Complex With Actin
pdb|2FF6|G Chain G, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
Length = 150
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 51 PVPTNLYGDFFTGDAYVILKTVQ 73
>pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human
Gelsolin Residues Val26-Glu156
Length = 136
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 29 PVPTNLYGDFFTGDAYVILKTVQ 51
>pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin
Length = 128
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 32 PVPTNLYGDFFTGDAYVILKTVQ 54
>pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 126
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 29 PVPTNLYGDFFTGDAYVILKTVQ 51
>pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
pdb|1YVN|G Chain G, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1.
pdb|1MDU|A Chain A, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1MDU|D Chain D, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1NLV|G Chain G, Crystal Structure Of Dictyostelium Discoideum Actin
Complexed With Ca Atp And Human Gelsolin Segment 1
pdb|1NM1|G Chain G, Crystal Structure Of D. Dicsoideum Actin Complexed With
Gelsolin Segment 1 And Mg Atp At 1.8 A Resolution
pdb|1NMD|G Chain G, Crystal Structure Of D. Discoideum Actin-Gelsolin
Segment 1 Complex Crystallized In Presence Of Lithium
Atp
pdb|3CJB|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Gelsolin-Segment 1
pdb|3CJC|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
Length = 125
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 29 PVPTNLYGDFFTGDAYVILKTVQ 51
>pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin
With Gelsolin
Length = 126
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV ++ +FF GDA+++LK++
Sbjct: 30 PVPTNLYGDFFTGDAYVILKTVQ 52
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 24 PVQLHISSNFFLGDAFIVLKSI 45
PV ++ +FF GDA+++LK++
Sbjct: 80 PVPTNLYGDFFTGDAYVILKTV 101
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 PVQLHISSNFFLGDAFIVLKSI---NGV 48
PV ++ +FF GDA+++LK++ NG+
Sbjct: 27 PVPPNLYGDFFTGDAYVILKTVQLRNGI 54
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 PVQLHISSNFFLGDAFIVLKSI---NGV 48
PV ++ +FF GDA+++LK++ NG+
Sbjct: 29 PVPPNLYGDFFTGDAYVILKTVQLRNGI 56
>pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In
Complex With Gelsolin Segment 1
pdb|1C0G|S Chain S, Crystal Structure Of 1:1 Complex Between Gelsolin
Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN
(MUTANT 228: Q228kT229AA230YE360H)
pdb|1DEJ|S Chain S, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA
Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN
Complex With Human Gelsolin Segment 1
pdb|3A5L|S Chain S, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5M|S Chain S, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5N|S Chain S, Crystal Structure Of A Dictyostelium P109a Ca2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5O|S Chain S, Crystal Structure Of A Dictyostelium P109i Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 127
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV + +FF GDA+++LK++
Sbjct: 31 PVPTCLYGDFFTGDAYVILKTVQ 53
>pdb|3IKL|A Chain A, Crystal Structure Of Pol Gb Delta-I4.
pdb|3IKL|B Chain B, Crystal Structure Of Pol Gb Delta-I4
Length = 459
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 72 KVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENR 120
++ +R++ +G + ++ A ++GNG H A GS + AL + + R
Sbjct: 31 ELLTERSSPKGGHVKS---HAELEGNGEHPEAPGSGEGSEALLEICQRR 76
>pdb|2G4C|A Chain A, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|B Chain B, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|C Chain C, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|D Chain D, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
Length = 474
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 72 KVFVDRNTVQGMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENR 120
++ +R++ +G + ++ A ++GNG H A GS + AL + + R
Sbjct: 20 ELLTERSSPKGGHVKS---HAELEGNGEHPEAPGSGEGSEALLEICQRR 65
>pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human
Gelsolin Domain 1
pdb|1ESV|S Chain S, Complex Between Latrunculin A:rabbit Muscle Alpha
Actin:human Gelsolin Domain 1
Length = 125
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 24 PVQLHISSNFFLGDAFIVLKSIN 46
PV + +FF GDA+++LK++
Sbjct: 29 PVPTCLYGDFFTGDAYVILKTVQ 51
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 52 NNGVEIVKLDQSNGAFKQIDK-----VFVDRNTVQGMNTRATIARASMQGNGNHGRASGS 106
N V ++ DQS + K+ + FVD N Q ++ RA I + ++ G GRA +
Sbjct: 437 NKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGGKGRACIT 496
Query: 107 S--FPNHAL 113
S +P A+
Sbjct: 497 SRVYPKLAI 505
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 52 NNGVEIVKLDQSNGAFKQIDK-----VFVDRNTVQGMNTRATIARASMQGNGNHGRASGS 106
N V ++ DQS + K+ + FVD N Q ++ RA I + ++ G GRA +
Sbjct: 437 NKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGGKGRACIT 496
Query: 107 S--FPNHAL 113
S +P A+
Sbjct: 497 SRVYPKLAI 505
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 52 NNGVEIVKLDQSNGAFKQIDK-----VFVDRNTVQGMNTRATIARASMQGNGNHGRASGS 106
N V ++ DQS + K+ + FVD N Q ++ RA I + ++ G GRA +
Sbjct: 437 NKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGGKGRACIT 496
Query: 107 S--FPNHAL 113
S +P A+
Sbjct: 497 SRVYPKLAI 505
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 52 NNGVEIVKLDQSNGAFKQIDK-----VFVDRNTVQGMNTRATIARASMQGNGNHGRASGS 106
N V ++ DQS + K+ + FVD N Q ++ RA I + ++ G GRA +
Sbjct: 437 NKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGGKGRACIT 496
Query: 107 S--FPNHAL 113
S +P A+
Sbjct: 497 SRVYPKLAI 505
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 52 NNGVEIVKLDQSNGAFKQIDK-----VFVDRNTVQGMNTRATIARASMQGNGNHGRASGS 106
N V ++ DQS + K+ + FVD N Q ++ RA I + ++ G GRA +
Sbjct: 437 NKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGGKGRACIT 496
Query: 107 S--FPNHAL 113
S +P A+
Sbjct: 497 SRVYPKLAI 505
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 52 NNGVEIVKLDQSNGAFKQIDK-----VFVDRNTVQGMNTRATIARASMQGNGNHGRASGS 106
N V ++ DQS + K+ + FVD N Q ++ RA I + ++ G GRA +
Sbjct: 441 NKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGGKGRACIT 500
Query: 107 S--FPNHAL 113
S +P A+
Sbjct: 501 SRVYPKLAI 509
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 48 VAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMN---------------TRATIARA 92
V KG NG EIV + +F D V + + G R ++ +A
Sbjct: 1333 VGKGMNGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVRNSVGKA 1392
Query: 93 SMQGNGNH 100
++G G+H
Sbjct: 1393 VIEGAGDH 1400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,881,149
Number of Sequences: 62578
Number of extensions: 138198
Number of successful extensions: 305
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 45
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)