BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045607
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
Length = 481
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 110/174 (63%), Gaps = 33/174 (18%)
Query: 1 MPGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSINGVAKG--------- 51
+PG TQ RIVNSY+D TGIVAEDPVQL IS FFLGDAFI+LKSI G +G
Sbjct: 308 LPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFS 367
Query: 52 --NNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGNG----------- 98
+GV+IV+LDQ N AF + +V VDRN+V GM ++T+AR S+ GNG
Sbjct: 368 GSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVL 427
Query: 99 ------NHGR-----ASGSSFPNHALRNVSENRVVIESDVAVPASVFVTVDQGM 141
NH + + FP HALRNVS+NRVV+E++ V +V+VTV+QG+
Sbjct: 428 LFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQGV 481
>sp|Q8R0X7|SGPL1_MOUSE Sphingosine-1-phosphate lyase 1 OS=Mus musculus GN=Sgpl1 PE=2 SV=1
Length = 568
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 64 NGAFKQIDKVFVDRNTVQGMNTRATIAR----ASMQGNGNHGRASGSSF 108
N F ++DK +V QGM T + R +SM G+ G+ASG+ +
Sbjct: 102 NMPFLKVDKDYVKTLPAQGMGTAEVLERLKEYSSMDGSWQEGKASGAVY 150
>sp|A8YTQ6|MNMG_LACH4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Lactobacillus helveticus (strain DPC 4571) GN=mnmG
PE=3 SV=1
Length = 661
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 44 SINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDR---NTVQGMNTRATIARASMQGNGNH 100
S+ G AKG EI L G K ID ++ NT +G RA A+A H
Sbjct: 53 SVGGPAKGTVVREIDALGGQMG--KNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEH 110
Query: 101 GRASGSSFPNHALRNVSENRVVIESDV 127
+ + + PN LR +++V+E V
Sbjct: 111 MKDTIENTPNLTLRQAIVDQLVVEDGV 137
>sp|C1AZL6|TATB_RHOOB Sec-independent protein translocase protein TatB OS=Rhodococcus
opacus (strain B4) GN=tatB PE=3 SV=1
Length = 143
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 41 VLKSINGVAKGNNGVEIVKLDQSNGAFKQIDKVFVDRNTVQGMNTRATIARASMQGN--- 97
V KS+ V + +G D+ F+ + K D N ++GM RA I + + G+
Sbjct: 33 VTKSLRQVREYASGASQQLKDELGPEFEDLRKPLADLNQLRGMTPRAVITKHLLDGDDSI 92
Query: 98 --GNHGRASGSSF 108
GN + SF
Sbjct: 93 LTGNFDKPGSVSF 105
>sp|Q97A95|TRI_THEVO Tricorn protease OS=Thermoplasma volcanium (strain ATCC 51530 / DSM
4299 / JCM 9571 / NBRC 15438 / GSS1) GN=tri PE=3 SV=1
Length = 1030
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 35 LGDAFIVLKSING--VAKGNNGVEIVKLDQSNGAFKQIDK 72
LG+ F V S +G + GN+ +I+ +D SNG K+ID+
Sbjct: 364 LGNIFSVKSSADGKYLVVGNDNFQILLIDVSNGTVKEIDQ 403
>sp|A1SYK3|DEOB_PSYIN Phosphopentomutase OS=Psychromonas ingrahamii (strain 37) GN=deoB
PE=3 SV=1
Length = 415
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 82 GMNTRATIARASMQGNGNHGRASGSSFPNHALRNVSENRVVIESDVAVPASV 133
G NT IA +GN N GR + PN L + R ES PA +
Sbjct: 37 GSNTLGHIAEQCAKGNANEGRHGPLTIPN--LNKLGFGRACAESSSTFPAGL 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,374,362
Number of Sequences: 539616
Number of extensions: 1735501
Number of successful extensions: 4155
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4150
Number of HSP's gapped (non-prelim): 11
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)