Query 045607
Match_columns 143
No_of_seqs 34 out of 36
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 05:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rmg_A Rgase A, rhamnogalactur 60.3 63 0.0021 27.2 9.4 76 7-87 161-254 (422)
2 1ia5_A Polygalacturonase; glyc 41.1 1.4E+02 0.0048 24.1 8.7 82 7-89 138-240 (339)
3 1nhc_A Polygalacturonase I; be 40.6 1.3E+02 0.0045 24.2 8.1 67 19-88 156-234 (336)
4 2iq7_A Endopolygalacturonase; 33.0 1.9E+02 0.0066 23.3 9.4 80 7-89 134-236 (339)
5 3tu5_B Gelsolin, protein cordo 31.5 18 0.00062 29.9 1.6 37 2-46 33-69 (297)
6 1t44_G Chimera of gelsolin dom 29.7 20 0.0007 26.6 1.4 16 31-46 36-51 (147)
7 3cip_G Gelsolin; actin, dictyo 28.2 24 0.00081 25.6 1.6 17 30-46 38-54 (128)
8 2ff3_A Gelsolin; protein-prote 27.5 23 0.0008 26.7 1.4 16 30-45 57-72 (150)
9 1j72_A Macrophage capping prot 25.6 26 0.0009 28.2 1.5 17 30-46 39-55 (347)
10 2vik_A Villin 14T; actin-bindi 24.9 23 0.0008 25.6 1.0 17 30-46 36-52 (126)
11 1k8r_B Protein kinase BYR2; si 21.9 16 0.00056 27.1 -0.4 23 4-26 9-39 (110)
No 1
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3
Probab=60.30 E-value=63 Score=27.16 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=49.3
Q ss_pred eeEeeeeecc------cceeeeCceEEEEEceEEe-ecceEEEEe-ecce------EEcCCCceEEEeccCCCCcceeeE
Q 045607 7 TRIVNSYMDC------TGIVAEDPVQLHISSNFFL-GDAFIVLKS-INGV------AKGNNGVEIVKLDQSNGAFKQIDK 72 (143)
Q Consensus 7 TRI~NcYlDy------t~IV~EDPvql~Is~~fFL-GDanIvLks-~~g~------~~G~~gv~IV~LD~s~G~F~~Idq 72 (143)
-+|.||+++- -||=++. -.++|.+++|- ||--|.+|+ .+.. +.+++|+-|=-+. .-..|..
T Consensus 161 v~I~n~~I~~~d~~ntDGidi~~-~nV~I~n~~i~~gDD~Iai~s~~~nI~I~n~~~~~~~GisIGS~g----~~~~v~n 235 (422)
T 1rmg_A 161 GEVYNMAIRGGNEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLG----ADTDVTD 235 (422)
T ss_dssp EEEEEEEEECCSSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEEC----TTEEEEE
T ss_pred EEEEeEEEECCCCCCCccEeecC-CeEEEEeeEEeCCCCeEEeCCCCcCEEEEeEEEcCCcceeecccC----CCCcEEE
Confidence 3577888864 3677777 78889998775 788899998 3322 3446677664433 2234666
Q ss_pred EEEeccc----ccceeeee
Q 045607 73 VFVDRNT----VQGMNTRA 87 (143)
Q Consensus 73 vvVD~N~----~~GM~lks 87 (143)
|.|+.+. .+|+.+|+
T Consensus 236 V~v~n~~~~~~~~Gi~Ikt 254 (422)
T 1rmg_A 236 IVYRNVYTWSSNQMYMIKS 254 (422)
T ss_dssp EEEEEEEEESSSCSEEEEE
T ss_pred EEEEeEEEeccceEEEEEe
Confidence 6666554 46777775
No 2
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*
Probab=41.11 E-value=1.4e+02 Score=24.11 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=50.4
Q ss_pred eeEeeeeeccc-----------ceeeeCceEEEEEceEE-eecceEEEEeecce------EEcCCCceEEEecc-CCCCc
Q 045607 7 TRIVNSYMDCT-----------GIVAEDPVQLHISSNFF-LGDAFIVLKSINGV------AKGNNGVEIVKLDQ-SNGAF 67 (143)
Q Consensus 7 TRI~NcYlDyt-----------~IV~EDPvql~Is~~fF-LGDanIvLks~~g~------~~G~~gv~IV~LD~-s~G~F 67 (143)
-+|.||+++-. ||=.+.=-.++|.+++| -||--|-+|+=+.. +++++|+-|=-|.. +.+.+
T Consensus 138 v~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDcIaiksg~nI~i~n~~~~~ghGisiGS~g~~~~~~v 217 (339)
T 1ia5_A 138 LTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTV 217 (339)
T ss_dssp EEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESSEEEEEEESCEEESSSCEEEEEECSSSCCEE
T ss_pred eEEeeEEEECCccccccCCCCCcEEecCCceEEEEeeEEEcCCCeEEEeCCeEEEEEeEEEECCceEEECcCCcccCCCE
Confidence 36777777643 36555557788999988 58888988884332 34577877655543 33444
Q ss_pred cee--eEEEEecccccceeeeeee
Q 045607 68 KQI--DKVFVDRNTVQGMNTRATI 89 (143)
Q Consensus 68 ~~I--dqvvVD~N~~~GM~lksTv 89 (143)
++| ....+. +..+|+.+|+..
T Consensus 218 ~nV~v~n~~~~-~t~~girIKt~~ 240 (339)
T 1ia5_A 218 KNVTFVDSTII-NSDNGVRIKTNI 240 (339)
T ss_dssp EEEEEEEEEEE-SCSEEEEEEEET
T ss_pred EEEEEEeeEEE-CCCcEEEEEEeC
Confidence 444 333332 245688888643
No 3
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3
Probab=40.60 E-value=1.3e+02 Score=24.18 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=39.4
Q ss_pred eeeeCceEEEEEceEE-eecceEEEEeecce------EEcCCCceEEEecc-CCCCcceeeEEEEecc----cccceeee
Q 045607 19 IVAEDPVQLHISSNFF-LGDAFIVLKSINGV------AKGNNGVEIVKLDQ-SNGAFKQIDKVFVDRN----TVQGMNTR 86 (143)
Q Consensus 19 IV~EDPvql~Is~~fF-LGDanIvLks~~g~------~~G~~gv~IV~LD~-s~G~F~~IdqvvVD~N----~~~GM~lk 86 (143)
|=.+.=-.+.|.+++| -||--|-+||=+.. +++++|+-|=-|.. +.+ .|..|.|+.+ ..+|+.+|
T Consensus 156 idi~~s~nV~I~n~~i~~gDDciaiksg~nI~i~n~~~~~ghGisiGS~g~~~~~---~v~nV~v~n~~~~~t~~girIk 232 (336)
T 1nhc_A 156 FDISESTGVYISGATVKNQDDCIAINSGESISFTGGTCSGGHGLSIGSVGGRDDN---TVKNVTISDSTVSNSANGVRIK 232 (336)
T ss_dssp EEECSCEEEEEESCEEESSSEEEEESSEEEEEEESCEEESSSEEEEEEESSSSCC---EEEEEEEEEEEEESCSEEEEEE
T ss_pred EEecCCCeEEEEeCEEEcCCCEEEEeCCeEEEEEeEEEECCcCceEccCccccCC---CEEEEEEEeeEEECCCcEEEEE
Confidence 4444456778888887 57777888773322 34467766655543 233 3444444443 45677777
Q ss_pred ee
Q 045607 87 AT 88 (143)
Q Consensus 87 sT 88 (143)
+-
T Consensus 233 t~ 234 (336)
T 1nhc_A 233 TI 234 (336)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 4
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}
Probab=33.02 E-value=1.9e+02 Score=23.26 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=49.1
Q ss_pred eeEeeeeeccc-----------ceeeeCceEEEEEceEE-eecceEEEEeecce------EEcCCCceEEEecc-CCCCc
Q 045607 7 TRIVNSYMDCT-----------GIVAEDPVQLHISSNFF-LGDAFIVLKSINGV------AKGNNGVEIVKLDQ-SNGAF 67 (143)
Q Consensus 7 TRI~NcYlDyt-----------~IV~EDPvql~Is~~fF-LGDanIvLks~~g~------~~G~~gv~IV~LD~-s~G~F 67 (143)
-+|.||+++-. ||-.+.=-.+.|.+++| -||--|-+|+=+.. +++++|+-|=-|.. +.+.
T Consensus 134 v~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDciaiksg~nI~i~n~~~~~ghGisiGSlg~~~~~~- 212 (339)
T 2iq7_A 134 LGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNT- 212 (339)
T ss_dssp EEEESCEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESSEEEEEEESCEEESSCCEEEEEESSSSCCE-
T ss_pred EEEEEEEEECCccccccCCCCCcEEEcCcceEEEEecEEecCCCEEEEcCCccEEEEeEEEECCceEEECcCCcccCCC-
Confidence 35677777643 46565567788898888 57777888874322 34577876655542 2333
Q ss_pred ceeeEEEEecc----cccceeeeeee
Q 045607 68 KQIDKVFVDRN----TVQGMNTRATI 89 (143)
Q Consensus 68 ~~IdqvvVD~N----~~~GM~lksTv 89 (143)
|..|.|+.+ ..+|+.+|+-.
T Consensus 213 --v~nV~v~n~~~~~~~~girIkt~~ 236 (339)
T 2iq7_A 213 --VKTVTISNSKIVNSDNGVRIKTVS 236 (339)
T ss_dssp --EEEEEEEEEEEESCSEEEEEEEET
T ss_pred --EEEEEEEeeEEECCCcEEEEEEeC
Confidence 444555443 35677887643
No 5
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=31.47 E-value=18 Score=29.89 Aligned_cols=37 Identities=35% Similarity=0.698 Sum_probs=24.2
Q ss_pred CCCceeeEeeeeecccceeeeCceEEEEEceEEeecceEEEEeec
Q 045607 2 PGNTQTRIVNSYMDCTGIVAEDPVQLHISSNFFLGDAFIVLKSIN 46 (143)
Q Consensus 2 pg~tqTRI~NcYlDyt~IV~EDPvql~Is~~fFLGDanIvLks~~ 46 (143)
||+..=||+|--+ + ||--.--+.||-||.||||...+
T Consensus 33 ~Gl~iWrIe~~~~-----~---~v~~~~~G~Fy~gd~Yivl~t~~ 69 (297)
T 3tu5_B 33 PGLQIWRVEKFDL-----V---PVPTNLYGDFFTGDAYVILKTVQ 69 (297)
T ss_dssp SEEEEEEEETTEE-----E---ECCGGGTTEEETTCEEEEEEEEE
T ss_pred CceEEEEEcCCEE-----E---ECCHHHcCeecCCCeEEEeEeEE
Confidence 6777777776332 1 11112247899999999998764
No 6
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=29.66 E-value=20 Score=26.64 Aligned_cols=16 Identities=44% Similarity=1.099 Sum_probs=14.3
Q ss_pred ceEEeecceEEEEeec
Q 045607 31 SNFFLGDAFIVLKSIN 46 (143)
Q Consensus 31 ~~fFLGDanIvLks~~ 46 (143)
+.||-||.||||....
T Consensus 36 G~Fy~gd~YIvl~ty~ 51 (147)
T 1t44_G 36 GDFFTGDAYVILKTVQ 51 (147)
T ss_dssp TEEETTCEEEEEEEEE
T ss_pred CeecCCCeEEEEEEEe
Confidence 6899999999999773
No 7
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=28.24 E-value=24 Score=25.64 Aligned_cols=17 Identities=41% Similarity=0.997 Sum_probs=14.6
Q ss_pred EceEEeecceEEEEeec
Q 045607 30 SSNFFLGDAFIVLKSIN 46 (143)
Q Consensus 30 s~~fFLGDanIvLks~~ 46 (143)
-..||-||.||||...+
T Consensus 38 ~G~Fy~gd~YIvl~ty~ 54 (128)
T 3cip_G 38 YGDFFTGDAYVILKTVQ 54 (128)
T ss_dssp TTEEETTCEEEEEEEEE
T ss_pred cCeecCCCeEEEEEEEe
Confidence 36899999999999773
No 8
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=27.50 E-value=23 Score=26.67 Aligned_cols=16 Identities=44% Similarity=1.045 Sum_probs=14.3
Q ss_pred EceEEeecceEEEEee
Q 045607 30 SSNFFLGDAFIVLKSI 45 (143)
Q Consensus 30 s~~fFLGDanIvLks~ 45 (143)
-..||-||.||||...
T Consensus 57 ~G~FysgD~YIVl~ty 72 (150)
T 2ff3_A 57 YGDFFTGDAYVILKTV 72 (150)
T ss_dssp TTEEETTSEEEEEEEE
T ss_pred cCeecCCCeEEEEEEE
Confidence 3689999999999977
No 9
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=25.63 E-value=26 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=14.8
Q ss_pred EceEEeecceEEEEeec
Q 045607 30 SSNFFLGDAFIVLKSIN 46 (143)
Q Consensus 30 s~~fFLGDanIvLks~~ 46 (143)
-+.||-||.||||...+
T Consensus 39 ~G~Fy~gd~Yivl~t~~ 55 (347)
T 1j72_A 39 QGVFFSGDSYLVLHNGP 55 (347)
T ss_dssp TTEEETTSEEEEEEECS
T ss_pred cCeecCCCEEEEEEeec
Confidence 46899999999999765
No 10
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=24.91 E-value=23 Score=25.62 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=14.2
Q ss_pred EceEEeecceEEEEeec
Q 045607 30 SSNFFLGDAFIVLKSIN 46 (143)
Q Consensus 30 s~~fFLGDanIvLks~~ 46 (143)
-..||-||.||||...+
T Consensus 36 ~G~Fy~gd~YIvl~t~~ 52 (126)
T 2vik_A 36 YGNFYEGDCYVLLSTRK 52 (126)
T ss_dssp TTCCCSSSCEEEEEEEE
T ss_pred cCeeCCCCeEEEEEecc
Confidence 36899999999999643
No 11
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=21.85 E-value=16 Score=27.09 Aligned_cols=23 Identities=39% Similarity=0.364 Sum_probs=18.4
Q ss_pred CceeeEeeeeeccccee--------eeCceE
Q 045607 4 NTQTRIVNSYMDCTGIV--------AEDPVQ 26 (143)
Q Consensus 4 ~tqTRI~NcYlDyt~IV--------~EDPvq 26 (143)
.-|||++|.-+||+.+. +|||-.
T Consensus 9 nGQTRaVq~~~~y~~~L~~ALkKF~ledpsk 39 (110)
T 1k8r_B 9 NGQTRAVQSRGDYQKTLAIALKKFSLEDASK 39 (110)
T ss_dssp TTCEEEEECCSCHHHHHHHHHHHHTCCCTTS
T ss_pred CCceEEeeehhhHHHHHHHHHHHcCCCChhH
Confidence 35999999999999764 388854
Done!